BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3356
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 71/123 (57%), Gaps = 13/123 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H RTHTGE+P++C CGK F+ K L H+R H +KPY C EC +FS + NL
Sbjct: 40 HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG-----EKPYKCPECGKSFSQRANLR 94
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK 176
H RTHTGE+PY C CGK FSQ + H+RTH ++P+ CP C F+ +
Sbjct: 95 AHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT--------GEKPYKCPECGKSFSRE 146
Query: 177 QNL 179
NL
Sbjct: 147 DNL 149
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 74/123 (60%), Gaps = 13/123 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H RTHTGE+P++C CGK F+Q++ L H+R H +KPY C EC +FS +L
Sbjct: 68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG-----EKPYACPECGKSFSQLAHLR 122
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK 176
H RTHTGE+PY+C CGK FS++ +TH+RTH ++P+ CP C F+ +
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT--------GEKPYKCPECGKSFSRR 174
Query: 177 QNL 179
L
Sbjct: 175 DAL 177
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
+ H RTHTGE+P+ C CGK F+Q + L H+R H +KPY C EC +FS + N
Sbjct: 94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-----EKPYKCPECGKSFSREDN 148
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHI 151
L H RTHTGE+PY+C CGK FS++ A N H+RTH
Sbjct: 149 LHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
+ H RTHTGE+P++C CGK F+++ L+TH+R H +KPY C EC +FS +
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG-----EKPYKCPECGKSFSRRDA 176
Query: 115 LEVHMRTHTGER 126
L VH RTHTG++
Sbjct: 177 LNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT 123
E+P++C CGK F+Q S L H+R H +KPY C EC +FS +L+ H RTHT
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTG-----EKPYKCPECGKSFSQSSDLQKHQRTHT 56
Query: 124 GERPYECEICGKRFSQKSACNTHKRTH 150
GE+PY+C CGK FS+ + H+RTH
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPR 156
+KPY C EC +FS NL+ H RTHTGE+PY+C CGK FSQ S H+RTH
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT----- 56
Query: 157 VHPKDRPFHCPACEGMFTTKQNL 179
++P+ CP C F+ +L
Sbjct: 57 ---GEKPYKCPECGKSFSRSDHL 76
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
Q H RTHTGE+P++C CGK F+Q S L H+R H +KPY C EC +FS +
Sbjct: 21 QKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG-----EKPYKCPECGKSFSRSDH 75
Query: 115 LEVHMRTHTGER 126
L H RTH ++
Sbjct: 76 LSRHQRTHQNKK 87
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
E+PY+C CGK FSQ S H+RTH ++P+ CP C F+ +L+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHT--------GEKPYKCPECGKSFSQSSDLQ 49
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF+QK+ L+TH R+H KP+ C C FS + +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG-----QKPFQCRICMRNFSQQASLNAHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F+ H + H+
Sbjct: 57 HTGEKPFACDICGRKFATLHTRTRHTKIHL 86
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA T H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFATLHTRTRHTKIHL 86
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFSQK+ +TH R+H +PF C C F+ + +L
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTH--------IRIHTGQKPFQCRICMRNFSQQASL 50
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF+QK+ L+TH R+H KP+ C C FS L H+RT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG-----QKPFQCRICMRNFSQHTGLNQHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F+ + H + H+
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHTKIHL 86
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA T + H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFATLHTRDRHTKIHL 86
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 22/73 (30%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLP--------------------RVHPKDR 162
ERPY C E C +RFSQK+ +TH R H P R H ++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 163 PFHCPACEGMFTT 175
PF C C F T
Sbjct: 62 PFACDICGRKFAT 74
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
F+C +CGK F + STL+TH +H +PY C C F K +++ H HTGE+
Sbjct: 2 FDCKICGKSFKRSSTLSTH-----LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 127 PYECEICGKRFSQKSACNTHKRTH 150
P++C++CGK FSQ S TH R H
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKH 80
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H+ H+ RP+ C CGKRF QKS + H +++H +KP+ C C FS NL
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKH-----TFIHTGEKPHKCQVCGKAFSQSSNLI 74
Query: 117 VHMRTHTG 124
H R HTG
Sbjct: 75 THSRKHTG 82
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHP 159
+ C C +F L H+ H+ RPY C+ CGKRF QKS H +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--------TFIHT 53
Query: 160 KDRPFHCPACEGMFTTKQNL 179
++P C C F+ NL
Sbjct: 54 GEKPHKCQVCGKAFSQSSNL 73
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF+Q +L H R+H KP+ C C FS +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F++ H + H+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 97 DKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
++PY C C+ FS +L H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 155 PRVHPKDRPFHCPACEGMFT 174
++PF C C F
Sbjct: 60 ------EKPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA+ H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFSQ + H R+H +PF C C F+ +L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH--------IRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF+ S L H R+H KP+ C C FS +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F++ H + H+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 97 DKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
++PY C C+ FS NL H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 155 PRVHPKDRPFHCPACEGMFT 174
++PF C C F
Sbjct: 60 ------EKPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA+ H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFS S H R+H +PF C C F+ +L
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRH--------IRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
++H R HTGE+PFEC CGK + +K L H+ + ++ ++ + C+ C+ TF +
Sbjct: 24 KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC--MNRSEQVFTCSVCQETFRRRME 81
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTH 146
L +HM +HTGE PY+C C ++F QK +H
Sbjct: 82 LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 23/102 (22%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTH--------------- 146
C C F K L+VH R HTGE+P+EC CGK + +K H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 147 --------KRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
+R + H + P+ C +C F K++L+
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
Q+H R HTGE+P++CD C +RF++ L H+R H KP+ C C+ FS
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-----KPFQCKTCQRKFSRS 79
Query: 113 QNLEVHMRTHTGERPYECE--ICGKRFSQKSACNTHKRTH 150
+L+ H RTHTGE+P+ C C K+F++ H H
Sbjct: 80 DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 19/122 (15%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHM 119
+RPF C C KR+ + S L H R H +KPY C +CE FS L+ H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-----EKPYQCDFKDCERRFSRSDQLKRHQ 58
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC--PACEGMFTTKQ 177
R HTG +P++C+ C ++FS+ TH RTH ++PF C P+C+ F
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG--------EKPFSCRWPSCQKKFARSD 110
Query: 178 NL 179
L
Sbjct: 111 EL 112
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 98 KPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPY 153
+P+ C C + +L++H R HTGE+PY+C+ C +RFS+ H+R H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 154 LPRVHPKDRPFHCPACEGMFTTKQNLE 180
+PF C C+ F+ +L+
Sbjct: 65 --------KPFQCKTCQRKFSRSDHLK 83
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF++ + L H R+H KP+ C C FS +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F++ H + H+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 97 DKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
++PY C C+ FS +L H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 155 PRVHPKDRPFHCPACEGMFT 174
++PF C C F
Sbjct: 60 ------EKPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA+ H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFS+ + H R+H +PF C C F+ +L
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRH--------IRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF++ + L H R+H KP+ C C FS +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F++ H + H+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 97 DKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
++PY C C+ FS L H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 155 PRVHPKDRPFHCPACEGMFT 174
++PF C C F
Sbjct: 60 ------EKPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA+ H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFS+ + H R+H +PF C C F+ +L
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRH--------IRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF++ L H R+H KP+ C C FS +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F++ H + H+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 97 DKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
++PY C C+ FS L H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 155 PRVHPKDRPFHCPACEGMFT 174
++PF C C F
Sbjct: 60 ------EKPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA+ H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFS+ H R+H +PF C C F+ +L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF++ L H R+H KP+ C C FS +L H+RT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 55
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F++ H + H+
Sbjct: 56 HTGEKPFACDICGRKFARSDERKRHTKIHL 85
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 97 DKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
++PY C C+ FS L H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 58
Query: 155 PRVHPKDRPFHCPACEGMFT 174
++PF C C F
Sbjct: 59 ------EKPFACDICGRKFA 72
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA+ H ++H+
Sbjct: 52 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFS+ H R+H +PF C C F+ +L
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICMRNFSRSDHL 49
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF++ L H R+H KP+ C C FS +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHI 151
HTGE+P+ C+ICG++F++ H + H+
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 97 DKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
++PY C C+ FS L H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-- 59
Query: 155 PRVHPKDRPFHCPACEGMFT 174
++PF C C F
Sbjct: 60 ------EKPFACDICGRKFA 73
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H+RTHTGE+PF CD+CG++FA+ H ++H+
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERPY C E C +RFS+ H R+H +PF C C F+ +L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICMRNFSRSDHL 50
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
DKPY C C+A+F +K NL H HTGE+PY C ICG +F++ + TH R H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT 123
++P++CD C F K L +HK VH +KPY C C A F+ NL+ H R H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTG-----EKPYRCNICGAQFNRPANLKTHTRIHS 69
Query: 124 GERP 127
GE+P
Sbjct: 70 GEKP 73
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
H HTGE+P+ C++CG +F + + L TH R+H
Sbjct: 36 HKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
++PY+C+ C F K +HK VH ++P+ C C F NL+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKT--------VHTGEKPYRCNICGAQFNRPANLK 62
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQN 114
H+ TH G R C CGK F + S L H+ VH +KP+ CT C FS N
Sbjct: 26 HLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG-----EKPFQCTFEGCGKRFSLDFN 79
Query: 115 LEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTH 150
L H+R HTG+RPY C + C K+F+Q + +H TH
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 72 CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC- 130
C K F S + H H +HV C EC F L+ H HTGE+P++C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV------CAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 131 -EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP--ACEGMFTTKQNLE 180
E CGKRFS + + RTH+ R+H DRP+ CP C F NL+
Sbjct: 67 FEGCGKRFS----LDFNLRTHV----RIHTGDRPYVCPFDGCNKKFAQSTNLK 111
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 66 PFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
P +C+VCGK F++K L TH R H KPY C C+ + +L H+R H+ E
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGV-----KPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 126 RPYECEICGKRFSQKSACNTHKRTHI 151
RP++C+IC S H R+H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
+ HMR HTG +P++C C A S+LN H R+ H ++P+ C C
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-----HSDERPFKCQICPYASRNSSQ 79
Query: 115 LEVHMRTHTGE 125
L VH+R+HTG+
Sbjct: 80 LTVHLRSHTGD 90
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVH 158
P+ C C FS K L+ HMR HTG +PY+C+ C + S+ N H R+H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH--------LRIH 59
Query: 159 PKDRPFHCPAC 169
+RPF C C
Sbjct: 60 SDERPFKCQIC 70
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
+G++ + C CGK F KS + H +H+ +PY C C F K +L HM+
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-----RPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 122 HTGERPYECEICGKRFSQKSACNTH 146
HTG +PYEC IC KRF + + + H
Sbjct: 60 HTGIKPYECNICAKRFMWRDSFHRH 84
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
HM H G RP+ C VCGK+F K L H ++H KPY C C F W+ +
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-----KPYECNICAKRFMWRDSFH 82
Query: 117 VHMRTHTGERPYE 129
H+ + T + YE
Sbjct: 83 RHVTSCT--KSYE 93
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPR 156
DK Y C +C +F+ K + HM H G RPY C +CGK+F K H+ +
Sbjct: 8 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKH--------HLVGHMK 58
Query: 157 VHPKDRPFHCPACEGMFTTKQNL 179
+H +P+ C C F + +
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSF 81
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 32/54 (59%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+KPY C EC FS L H R HTGE+PY+C CGK FSQ S H+R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT 123
E+P+ C CGK F++ S L H+RVH +KPY C EC FS L H R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTG-----EKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHIS 91
H R HTGE+P++C CGK F+Q S L H+R+H S
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
E+PY C CGK FS+ S H+R VH ++P+ C C F+ L
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR--------VHTGEKPYKCLECGKAFSQNSGL 58
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
IH RTHT ERP+ CD+C K F ++ L H+ Y+H K+KP+ C EC F + L
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDHR-----YIHSKEKPFKCQECGKGFCQSRTL 89
Query: 116 EVHMRTH 122
VH H
Sbjct: 90 AVHKTLH 96
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHT 123
++ F C CG+ F + L H+R H ++PY C C F + +L H H+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTD-----ERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 124 GERPYECEICGKRFSQKSACNTHKRTHI 151
E+P++C+ CGK F Q HK H+
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
K + C C F+ NL +H RTHT ERPY C+IC K F ++ H+ +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY--------I 67
Query: 158 HPKDRPFHCPACEGMFTTKQNL 179
H K++PF C C F + L
Sbjct: 68 HSKEKPFKCQECGKGFCQSRTL 89
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
H H+ E+PF+C CGK F Q TL HK +H+
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
++ + C+ CG+ F++ H+RTH +RP+ C C F + +L
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTD--------ERPYTCDICHKAFRRQDHL 61
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
+G C++CGK F LN HK H +KPY C C F K + H+R+
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHK-----LSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Query: 122 HTGE--RPYECEICGKRFSQKSACNTH 146
H G +PY C+ CGK FS+ N H
Sbjct: 58 HDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H +H+GE+P+ C VCG RF +K ++ H R H + KPY C C FS +L
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV---GKPYICQSCGKGFSRPDHLN 82
Query: 117 VHMR-THTG 124
H++ H+G
Sbjct: 83 GHIKQVHSG 91
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKD 161
C C F +L H +H+GE+PY C +CG RF +K + H R+H +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV------G 63
Query: 162 RPFHCPACEGMFTTKQNLE 180
+P+ C +C F+ +L
Sbjct: 64 KPYICQSCGKGFSRPDHLN 82
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
+G CEICGK F N HK + H ++P+ CP C F K +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLS--------HSGEKPYSCPVCGLRFKRKDRMS 52
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+ Y C EC +FS +L H RTHTGE+PY+C+ CGK F Q+S H R H P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG 124
R ++CD CGK F+ S L+ H+R H +KPY C EC F + +L H R HTG
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTG-----EKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Query: 125 ERP 127
P
Sbjct: 72 SGP 74
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHIS 91
H RTHTGE+P++CD CGK F Q+S L H RVH
Sbjct: 37 HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
R Y+C+ CGK FS S + H+RTH ++P+ C C F + +L
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTG--------EKPYKCDECGKAFIQRSHL 62
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
+ H+RTHTGE+P+ CD CG +FA+ L H R H + +P+ C +C+ FS
Sbjct: 25 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH-----RPFQCQKCDRAFSRS 79
Query: 113 QNLEVHMRTH 122
+L +HM+ H
Sbjct: 80 DHLALHMKRH 89
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 69 CDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTG 124
CD CGK + + S L H R H +KPYHC C F+ L H R HTG
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTG-----EKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
RP++C+ C + FS+ H + H
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
C T++ +L+ H+RTHTGE+PY C+ CG +F++ H R H + R
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------R 65
Query: 163 PFHCPACEGMFTTKQNL 179
PF C C+ F+ +L
Sbjct: 66 PFQCQKCDRAFSRSDHL 82
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
+ H+RTHTGE+P+ CD CG +FA+ L H R H + +P+ C +C+ FS
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH-----RPFQCQKCDRAFSRS 78
Query: 113 QNLEVHMRTH 122
+L +HM+ H
Sbjct: 79 DHLALHMKRH 88
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 69 CDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTG 124
CD CGK + + S L H R H +KPYHC C F+ L H R HTG
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTG-----EKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
RP++C+ C + FS+ H + H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
C T++ +L+ H+RTHTGE+PY C+ CG +F++ H R H + R
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------R 64
Query: 163 PFHCPACEGMFTTKQNL 179
PF C C+ F+ +L
Sbjct: 65 PFQCQKCDRAFSRSDHL 81
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 56 IHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSW 111
+HMR HTGE+P +C + C K +++ L TH R H +KPY C C FS
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG-----EKPYMCEHEGCSKAFSN 111
Query: 112 KQNLEVHM-RTHTGERPYECEI--CGKRFSQKSACNTHKRT 149
+ H RTH+ E+PY C++ C KR++ S+ H +T
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 68 ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGE 125
EC GK F K L H RVH +KP+ C C F+ +NL++H RTHTGE
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTG-----EKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 126 RPYECEI--CGKRFSQKSACNTHKRTH 150
+P++CE C +RF+ S H H
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 57 HMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHC--TECEATFSWK 112
H+R HTGE+PF C CGK FA+ L HKR H +KP+ C C+ F+
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG-----EKPFKCEFEGCDRRFANS 135
Query: 113 QNLEVHMRTHTGER 126
+ + HM HT ++
Sbjct: 136 SDRKKHMHVHTSDK 149
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHIS 91
+IH RTHTGE+PF+C+ C +RFA S H VH S
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHK 147
KP+ C C FS +L H+RTHTGE+P+ C+ICG++F++ H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRV 88
H+RTHTGE+PF CD+CG++FA+ H+ +
Sbjct: 22 HIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
+P++C IC + FS+ TH RTH ++PF C C F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG--------EKPFACDICGRKFA 42
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90 ISYLHVKDKPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHK 147
++Y+ K +PY C C+ FS L H+R HTG++P++C IC + FS+ TH
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 148 RTH 150
RTH
Sbjct: 70 RTH 72
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
RP+ C V C +RF++ L H R+H KP+ C C FS +L H+RTH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRTH 72
Query: 123 T 123
T
Sbjct: 73 T 73
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
H+R HTG++PF+C +C + F++ L TH R H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 126 RPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
RPY C E C +RFS+ H R +H +PF C C F+ +L
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR--------IHTGQKPFQCRICMRNFSRSDHL 65
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 57 HMRTHTGERPFECDV--CGKRFAQKSTLNTH-KRVHISYLHVKDKPYHC--TECEATFSW 111
H THTGE+ F CD C RF K+ + H R H ++K Y C C F
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH----NIKICVYVCHFENCGKAFKK 118
Query: 112 KQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPY 153
L+VH +HT + PYEC E C KRFS S H++ H Y
Sbjct: 119 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 103 TECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPK 160
+C A ++ L+ H+ HTGE+P+ C E C K F+ H TH
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-------- 69
Query: 161 DRPFHCPA--CEGMFTTKQNLE 180
++ F C + C+ FTTK N++
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMK 91
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 55 QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKD 97
++H +HT + P+EC + C KRF+ S L H++VH Y KD
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 55 QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
+ H+RTHTGE+P++C + C RFA+ L H R H KP+ C C +FS
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG-----AKPFQCGVCNRSFSRS 88
Query: 113 QNLEVHMRTH 122
+L +HM+ H
Sbjct: 89 DHLALHMKRH 98
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 69 CDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTG 124
CD C K + + S L H R H +KPY CT C+ F+ L H R HTG
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTG-----EKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
+P++C +C + FS+ H + H
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
C ++ +L+ H+RTHTGE+PY+C E C RF++ H R H +
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG--------AK 74
Query: 163 PFHCPACEGMFTTKQNL 179
PF C C F+ +L
Sbjct: 75 PFQCGVCNRSFSRSDHL 91
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKD-KPYHCTECEATFSWKQNLEV 117
RTH+GE+P+EC +C RF Q T+ ++HI H ++ +HC C+ + K +L V
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTM----KMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 118 HMR 120
H+R
Sbjct: 64 HLR 66
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
RTH+GE+PYEC IC RF+Q H L + FHCP C+ + K +L
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH------ILQKHTENVAKFHCPHCDTVIARKSDL 61
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 62 TGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEV 117
+G CD CG+ F+ + LN HK+ Y H+ K + C E C +F++K++L+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKK----YQHIHQKSFSCPEPACGKSFNFKKHLKE 58
Query: 118 HMRTHTGERPYECEICG 134
HM+ H+ R Y CE G
Sbjct: 59 HMKLHSDTRDYICEFSG 75
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
ERPF C+ CGK + S L+ H+R H+ Y +P C EC F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGY-----RPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
++P+ C C T+ L H R H G RP C CGK F +S N H + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
ERP+ C CGK + S + H+R H+ Y PR CP C F + +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRS--------CPECGKCFRDQSEV 48
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
H R H G RP C CGK F +S +N H +VH
Sbjct: 23 HRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C+EC+ F+ K NL VH RTHTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PFEC C K F KS L H+R H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P+EC C K F+ KS H+RTH P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C+EC FS K L +HMRTH+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PY C CGK FS KS H RTH
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ C CGK F+ KS L H R H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC TFS K L H RTHTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY C CGK FSQKS + H+RTH P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+ C+ CGK F+QKS L+ H+R H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTG 37
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
C+ C F L +H+RTHTGE+PY+CE C +QK++ H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
IH+RTHTGE+P++C+ C AQK++L H H
Sbjct: 21 NIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 63 GERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
G EC CGK F LN H R H +KPY C CE + K +L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTG-----EKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 124 GERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
G EC CGK F N H RTH ++P+ C CE K +L
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTG--------EKPYKCEFCEYAAAQKTSL 48
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
KPY C+EC F K L +HMRTHTGE+P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+G +PY C CGK F KS H RTH P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+G +P+ C CGK F KS L H R H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 56 IHMRTHTGERP 66
IHMRTHTGE+P
Sbjct: 28 IHMRTHTGEKP 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+KPY C EC+ F+ K NL VH RTHTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+EC+ C K F KS L H+R H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
E+PYEC C K F+ KS H+RTH
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTH-KRVHISYLHVKDKPYHCTECEATFSWKQNLEV 117
RTHTGE+P+ C C K F QK L+ H KR H + + C++C TF+ + +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP--NFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 118 HMRTHTGERPYECEICG 134
H G E E G
Sbjct: 66 HADNCAGPDGVEGENSG 82
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTH-KRTHIP-YLPRVHPKDRPFHCPACEGMFTTKQ 177
RTHTGE+PY C C K F QK + H KR H P ++P F C C FT +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA------FVCSKCGKTFTRRN 61
Query: 178 NL 179
+
Sbjct: 62 TM 63
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+KPY C++C +F+WK L +H + HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLH 94
E+P++C CGK F KS L H++ H H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERH 40
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
E+PY+C CGK F+ KS H++ H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
KPY C++C TFS K L VH R+HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+PY C C K FS KS H+R+H P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P+ C C K F+ KS L H+R H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ K NL H R HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+ C CGK FAQK+ L H+R+H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY C CGK F+QK+ H+R H P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 63 GERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
G + C VC + + ++L H +H +K Y C CE F + H H
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIH-----SWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKD 161
TGER Y+C CGK F ++H ++ VH +D
Sbjct: 74 TGERRYQCLACGKSFINYQFMSSHIKS-------VHSQD 105
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTH-KRVH 89
HTGER ++C CGK F +++H K VH
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHP 159
Y C C+ ++ +L H H+ E+ Y C C K F H+ H H
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-IH-------HT 74
Query: 160 KDRPFHCPACEGMFTTKQ 177
+R + C AC F Q
Sbjct: 75 GERRYQCLACGKSFINYQ 92
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H H+ E+ + C C K F H+ +H H ++ Y C C +F Q +
Sbjct: 41 HFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-IH----HTGERRYQCLACGKSFINYQFMS 95
Query: 117 VHMRTHTGERP 127
H+++ + P
Sbjct: 96 SHIKSVHSQDP 106
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PF+C+ CGKRF Q S L++H+RVH
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P++CE CGKRF+Q S ++H+R H P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC F+ L H R HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PF+C+ CGKRF Q S L++H+RVH
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P++CE CGKRF+Q S ++H+R H P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC F+ +L H R HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 105 CEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTH 150
C T+ +L+ H RTHTGE+P+ C + C +RF++ + H+RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 55 QIHMRTHTGERPFECD--VCGKRFAQKSTLNTHKRVH 89
+ H RTHTGE+PF C C +RFA+ L+ H+R H
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 72 CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTH 122
CGK + + S L H R H +KP+ C+ CE F+ L H RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTG-----EKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 60 THTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
+ T E+PF CD C K F Q+S LN+H+ +H
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 121 THTGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+ T E+P+ C+ C K F Q+SA N+H+ H P
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C C+ +F + L H HTGE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+KPY CT+C F K L +H RTHTGE
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PYEC CGK F KS H+RTH
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+EC CGK F KS L H+R H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C+ C FS +Q+L VH R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+EC VCGK F+ + +L+ H+R+H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PYEC +CGK FS + + + H+R H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
+ C+ CG R + S L H R H +PYHCT C +F K NL HM++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV-----RPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 128 YECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
Y CE CG R + S H RTH RP+HC C F TK NL
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV--------RPYHCTYCNFSFKTKGNL 45
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT 149
Y C EC L+ H+RTHT RPY C C F K H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTH 85
H+RTHT RP+ C C F K L H
Sbjct: 20 HIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C +C FS K +L VH+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ CD CGK F+QK +L H RVH
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY C+ CGK FSQK + H R H P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C++C +F K L VH R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+EC CGK F +KS L+ H+R+H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PYEC CGK F +KS + H+R H P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+ ++CDVCGK F+Q S L TH+RVH
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+ Y+C++CGK FSQ S TH+R H P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+K Y C C FS +L+ H R HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC +FS L H R HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+PFEC CGK F+ S L TH+R+H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P+EC CGK FS S TH+R H P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C +C ++ K NL++H + HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK + K L+ H++VH
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+CE CGK ++ K + H++ H P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY+C EC +F W L H R H+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ C CGK F S L H+RVH
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY C+ CGK F S H+R H P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+ P+ C+EC F+ K NL +H + HTGERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E PF C CGK F K+ L H+++H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIH 35
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F + +L +H TH+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P++C+ CGK F +S+L H+ H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F +S+ H+ TH P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PF+CD+CGK F +S LN H VH +
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P++C+ICGK F +S N H H P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C C +F + L H HT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
ER +EC CGK F QKSTL+ H+R+H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
++ Y C+EC F K L +H R H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
ER YEC CGK F QKS + H+R H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ + NL H + HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+ C CGK F +S L TH+++H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY C CGK F+ +S TH++ H P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+EC +CGK F +KS L+ H+++H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C+ C +F+ K L VH + HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PYEC ICGK F++KS + H++ H P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC FS L H R HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F+Q S L H+R+H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK FSQ S H+R H P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P++C CGK F+Q+ +L H+R+H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY+C+ CGK FSQ+ + H+R H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC +FS + +L VH R HTG P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
KPY C EC FS L H R HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHIS 91
+P++C+ CGK F+Q S L H+RVH
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+PY+C CGK FSQ S H+R H P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC +FS+ L VH R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P EC CGK F+ S L H+R+H
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P+EC CGK FS S H+R H P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+KPY C++C F+ K L +H ++HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLH 94
E+P++C CGK F +KS L+ H++ H H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
E+PY+C CGK F++KS + H+++H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHTGERP 127
PY C++CE +FS K L VH R HT E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C C +F + +L VH R HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P++CDVC K F S+L H+R+H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C++C K F S+ H+R H P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+KPY C EC FS K L VH R HTGE+
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+ C+ CGK F+ KS L H+R+H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 36.2 bits (82), Expect = 0.010, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY C CGK FS KS H+R H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTG 124
+KPY C EC F WK L VH RTH G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+EC+ CGK F KS L H+R H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PYEC CGK F KS H+RTH
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKS 141
C C F+ +++L+ H R+HT E+PY C +C + F+++
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD 44
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH-MRTHTG 124
F C+VC + FA++ L H R H + +KPY C C F+ + L H + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN-----EKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTH-KRVHISYL 93
H R+HT E+P+ C +C + F ++ L H +++H L
Sbjct: 21 HYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPY 153
H C F L+VH +HT + PYEC E C KRFS S H++ H Y
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 55 QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKD 97
++H +HT + P+EC + C KRF+ S L H++VH Y KD
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+ C CGK F Q S L+ H+RVH
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY C+ CGK F+Q S + H+R H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+KPY C EC F+ L +H R HTGE
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPY 153
H C F L+VH +HT + PYEC E C KRFS S H++ H Y
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 55 QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKD 97
++H +HT + P+EC + C KRF+ S L H++VH Y KD
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 98 KPYHCT--ECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPY 153
K Y C+ +C A ++ L+ H+ HTGE+P+ C E C K F+ H TH
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG- 60
Query: 154 LPRVHPKDRPFHCPA--CEGMFTTKQNLE 180
++ F C + C+ FTTK N++
Sbjct: 61 -------EKNFTCDSDGCDLRFTTKANMK 82
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 55 QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFS 110
Q H+ HTGE+PF C + C K F L H S H +K + C C+ F+
Sbjct: 22 QAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH-----SLTHTGEKNFTCDSDGCDLRFT 76
Query: 111 WKQNLEVHM 119
K N++ H
Sbjct: 77 TKANMKKHF 85
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ C+ CGK F QKS LN H+R+H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC +F K +L H R HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY C CGK F QKS N H+R H P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F++K L VH HTG +P
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+ C+ CGK F KS L HK VH
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVH 33
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+GE+PY C CGK F+ KS HK H P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC FS + L VH + HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PF+C CGK F+++S LN H ++H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P++C CGK FS++SA N H + H P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
ER +EC CGK FA+KSTL H+R+H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIH 35
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
++ Y C+EC F+ K L +H R HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
ER YEC CGK F++KS H+R H P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
RP+ C VCGKRF+ K + TH RVH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
RPY C +CGKRFS K TH R H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTG 124
+PY C+ C FS K +E H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE PYEC CGK F++K +H+RTH
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 35.8 bits (81), Expect = 0.013, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE P+EC CGK F +K L +H+R H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 34.3 bits (77), Expect = 0.043, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+ PY C+EC F+ K L H RTH GE
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+G+R +EC CGK F QK +L H+R+H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+G+R YEC+ CGK F QK + H+R H P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERP 127
Y C EC +F K +L +H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C C F+ K +L H +THTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PYEC++C K F+QK+ H++TH P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+EC VC K F QK+ L H++ H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTG 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
K + C EC+ TF+ +L VH R HTGE+P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
++ F+C+ C K F Q S+L H+R+H
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIH 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
++KPY C+EC F L VH RTH+GE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 60 THTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ T E+P+EC CGK F + S L H+R H
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTH 35
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 121 THTGERPYECEICGKRFSQKSACNTHKRTH 150
+ T E+PYEC CGK F + S H+RTH
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+EC+ CGK F+ +S+L TH+ +H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C +C FS + +L H HTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PYEC CGK FS +S+ TH+ H P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC FS +L H R HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+EC CGK F+Q + L H+RVH
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PYEC+ CGK FSQ + H+R H P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+PY C EC F K +L H R+HTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
+RP+EC CGK F KS+L H+R H
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+RPYEC CGK F KS+ H+R+H P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ECDVC K F+ ++L H+RVH
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C C FS +L H R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PYEC++C K FS ++ H+R H P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+K + C+EC TFS+ L +H R HTGE P
Sbjct: 8 EKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY+C EC F L+ H R HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+ C+ CGK F S L H+R+H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY CE CGK F S H+R H P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+ PY C EC FS K L H RTH GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E PYEC CGK FS+K +H+RTH P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E P+EC CGK F++K L +H+R H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAG 37
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ C+VCGK F + LN H RVH
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PY C +CGK F + N H R H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+KPY C C F +L H+R HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
KP+ CT C +F K NL H R HTGE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
++PFEC CGK F K L TH+R+H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
++P+EC CGK F K TH+R H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ +L H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F Q S L H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F+Q S H R H P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
K+KPY C EC F + NL H HTGE+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 60 THTGERPFECDVCGKRFAQKSTLNTHKRVHIS 91
+ T E+P++C CGK F +S L TH+ +H
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 121 THTGERPYECEICGKRFSQKSACNTHKRTHI 151
+ T E+PY+C CGK F +S TH+ H
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHT 36
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F NL H HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F S L TH+ +H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F S TH+ H P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISY 92
E+P++C CGK F + + LN H+R+H Y
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGY 38
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F + + N H+R H Y P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C+EC F +L H R HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 35.8 bits (81), Expect = 0.012, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KPY C +C + K NL VH+R HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 35.8 bits (81), Expect = 0.012, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY C +CG RF +K + H R+H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 35.0 bits (79), Expect = 0.025, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+ C VCG RF +K ++ H R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTG 124
+KPY C C F K + H+R+H G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGE 125
KPY C EC F K L +H RTHTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P+ C+ CGK F KS L H R H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY C CGK F KS H RTH
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC F +L H+R HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PF+C CGK F Q L +H R+H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRP 163
E+P++C+ CGK F Q N H +H+ R+H ++P
Sbjct: 10 EKPFKCKECGKAFRQ----NIHLASHL----RIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.015, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGE 125
KPY C EC F K L +H R HTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 35.8 bits (81), Expect = 0.015, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+G++P+ C+ CGK F KS L H+R+H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+G++PY C CGK F KS H+R H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+KPY C EC + + +L+ H R HTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C CGK + ++ L+ H+RVH
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PY+C CGK + ++ + H+R H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVH 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
KPY C EC FS +L H HTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P+ C+ CGK F+ S+L TH+ +H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY C CGK FS S+ TH+ H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F L H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F S L+ H+R+H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F S + H+R H P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
++PY CT C F+ + NL H + HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
ERP+ C VCGK F +S L H+++H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
ERPY C +CGK F+ +S H++ H P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F Q S L H+R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ +L H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F+Q S H+R H P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
ERPF+C+ CGK F ++S L H R+H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
++P+ C EC F + +L H+R H+ E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
ERP++C CGK F ++S H R H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
K + CTEC F+ K L +H + HTGE+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHIS 91
FEC CGK F +KSTL+ H+++H
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 128 YECEICGKRFSQKSACNTHKRTHIPYLP 155
+EC CGK F++KS + H++ H P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ +L H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F Q S L H+RVH
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F+Q S H+R H P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+KPY C +C ++ + NL++H R H GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK + ++ L+ H+RVH+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
E+PY+CE CGK ++++ + H+R H+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHM 36
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC +++ + +L H R HTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PF+C CGK + Q+ L H+RVH
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P++C CGK ++Q+ H+R H P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KPY C EC TF +L H R HTGER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
++P+EC C K F Q LN HKRVH
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
++PYEC+ C K F Q N HKR H
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVH 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KP+ C C+ FS +L+ H RTHTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHIS 91
+PF+C C ++F++ L TH R H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHI 151
+P++C+ C ++FS+ TH RTH
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHT 26
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F S+C H+R H P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F + H R HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C CGK F S+ H+R+H
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTG 37
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+ C CGK F +KS TH+R+H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+KPY CTEC F K + H R HTGE
Sbjct: 8 EKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY C CGK F +KS TH+R H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+KP CTEC F WK L +H RTH ++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLH 94
E+P +C CGK F KS L H+R H+ H
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKH 40
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
E+P +C CGK F KS H+RTH+
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHV 36
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C+ CE FS K L VH +TH E+P
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHI 90
+GE+PF C C K F+ KS L H++ H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+GE+P+ C C K FS KS H++TH P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+PF+C CGK F+ LN H+R+H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C +C FS L H R HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P++C CGK FS N H+R H P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+G++P C+ CGK F Q S L+ H+R+H
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIH 33
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
KP C EC TF L H R H+GE+P
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+G++P C CGK F Q S + H+R H P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ +L H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F Q S L H+ +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F+Q S H+ H P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ C++CG RF TL +H R+H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY CEICG RF +H R H P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C C F Q L+ H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+K Y C EC FS L H + HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+ ++C+ CGK F++ S L+ H+++H
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+ Y+C CGK FS+ S + H++ H P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ + NL H + HT ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P+ C CGK F +S L H+++H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY C CGK F+ +S H++ H P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
KPY C EC F+ +L H HTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
++P++C+ CGK F Q S L H+ +H
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
++PY+C CGK F+Q S H+ H P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F +++L H HTGE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F + L TH VH
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+CE CGK F + TH H P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F+ +L H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C+ CGK F Q S L H+ +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+C CGK F+Q S H+ H P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.061, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTG 124
+KPY C++C F++K L VH HTG
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 33.1 bits (74), Expect = 0.081, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+ C CGK F KS L H+ +H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY C CGK F+ KS H+ H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+P++CE CGK F S C +H+R+H P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC F H R+H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+PF+C+ CGK F S +H+R H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSH 35
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C C F L H R HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P+ CD CGK F + L H+R+H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PY C+ CGK F + H+R H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMR-THTGERPYECEI 132
KPY C C FS +L H++ HT ERP++C++
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC 102
+P+ C CGK F++ LN HI +H ++P+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNG----HIKQVHTSERPHKC 44
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC 166
+PY C+ CGK FS+ N H + +VH +RP C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGH-------IKQVHTSERPHKC 44
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.075, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+ EC+ CGK F+ KS L H+R+H
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH 33
Score = 32.0 bits (71), Expect = 0.18, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+K + C C FS+K L +H R HTGE
Sbjct: 8 EKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 31.6 bits (70), Expect = 0.26, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+ +EC CGK FS KS H+R H
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH 33
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
KPY C+EC +FS L H THT E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 95 VKDKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
K+ P+ C EC TFS +L H H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHI 90
T E PF+C+ CGK F+ + L+ H+ +H
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHA 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERP 127
K + C EC F+ K +L H R HTGE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHIS 91
+ +C CG+ F KS LN H+R+H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+ ++C CG+ F+ KS N H+R H P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 0.099, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 69 CDVCGKRFAQKSTLNTHKRVHIS 91
CD+CGK+F K TL +HK +H +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTA 34
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 130 CEICGKRFSQKSACNTHKRTH 150
C++CGK+F K +HK H
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLH 32
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
ERP +C+ CGK F Q + L H+R+H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
++P+ C EC +F +L H R HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
ERP++C CGK F Q + H+R H P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+ PY C EC FS K L H +TH+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E PYEC CGK FS+K +H++TH
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E P+EC CGK F++K L +H++ H
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C EC F +L H HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+P++C CGK F + S L H+ +H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTG 37
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KP+ C EC FSW +L H+R+H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+PF+C CG F+ +L H R H
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSH 35
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 30/93 (32%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
+G +C++CG QK++LN H+R H + P
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFP---------------------- 40
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
CE CGKRF + + H+ P L
Sbjct: 41 --------CEFCGKRFEKPDSVAAHRSKSHPAL 65
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P++C+ CG RF Q + L H +H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C C A F +L H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
E+PY+CE CG RF Q + H H P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+K + C EC+ FS +L +H H GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KPY C C+ F+ L+ H+R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKP 99
++P+EC CGK F Q ++L H R Y H +KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWR----YYHTGEKP 41
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 98 KPYHCTECEATFSWKQNLEVHMR-THTGERP 127
KPY C EC F +L H R HTGE+P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHTGER 126
P C EC F+ NL+ H+R H+GE+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 66 PFECDVCGKRFAQKSTLNTHKRVH 89
P +C CGK+F L H R+H
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIH 25
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHT 123
+KPY C EC+ TFS L H + HT
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKP 99
+GE+P+ C C + F+ + L H+++H VK P
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT----VKSGP 39
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P+ C+ CGKRF Q S L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY CE CGKRF Q S H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+K Y+C EC +FS L H R H+GE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
E+ CD CGK F S L H+RVH+
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+K + C EC F + L +H R H GE+
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
+G+RP+ C IC F+ K+ C H + H L
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHISYL 93
+G+RPF C +C F K+ H +VH L
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+KPY C C F +L H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+P++C VCGK F S L H VH
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PY+C++CGK F S H H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKR 87
E P+ C CGK F Q+ +L H+R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRT 149
E PY C CGK F+Q+ + H+R+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRS 33
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRT 121
+PYHC+ C +F K NL HM++
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKS 24
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KP C C F+ +L H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P +C +CGK F Q S+L H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+P +C +CGK F+Q S+ H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
K + C C F +K +L+ H+R HT E+
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHT 123
K Y C++C+ATF+ +++L H +TH
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHA 36
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 65 RPFEC--DVCGKRFAQKSTLNTHKRVHIS 91
RPF C CGKRF + L HKR H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
RP+ C CGKRF++ HKRTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGER 126
KP+ C+ CE K NL+ HM H+ E+
Sbjct: 7 GKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHI 90
ERP+ C+ CGK F + S L H + H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
ERPY C CGK F + S H + H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKR 87
+IH R H +RPF+C+ C Q S L+ H +
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 79 KSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
K+ L H+R+H + D+P+ C C NL HM+ G+
Sbjct: 22 KAALRIHERIHCT-----DRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
++C +C + F +KS L+ H+RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
Y+C +C + F +KSA + H+R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
++ + C++C F N H R HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHIS 91
ER C CGK F Q S H+R+H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTG 37
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 64 ERPFECDVCGKRFAQKSTLNTH 85
++P+ CD+CGKR+ + L+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 125 ERPYECEICGKRFSQKSACNTH 146
++PY C+ICGKR+ + + H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 96 KDKPYHCTECEATFSWKQNLEVHMRTHT 123
K+K + C +CE TFS + L H R HT
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
R TG +PF+C C + F++ L H++ H+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTH 122
KP+ C +C+ +FS +L +H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHI 151
R TG +P++C C + FS+ H++ H+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>pdb|1SQD|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1TFZ|A Chain A, Structural Basis For Herbicidal Inhibitor Selectivity
Revealed By Comparison Of Crystal Structures Of Plant
And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases
pdb|1TG5|A Chain A, Crystal Structures Of Plant 4-Hydroxyphenylpyruvate
Dioxygenases Complexed With Das645
Length = 424
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 72 CGKRFAQKSTLNTHKRVHISYL 93
G RF+ KS L+T VH SYL
Sbjct: 47 LGMRFSAKSDLSTGNMVHASYL 68
>pdb|1SP9|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP9|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
Length = 445
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 72 CGKRFAQKSTLNTHKRVHISYL 93
G RF+ KS L+T VH SYL
Sbjct: 68 LGMRFSAKSDLSTGNMVHASYL 89
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 69 CDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHM 119
C VCG+ FA K H R+ LH + + C C ATF L H+
Sbjct: 31 CPVCGESFASKGAQERHLRL----LHAA-QVFPCKYCPATFYSSPGLTRHI 76
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E PF+C C + F Q++ L H+R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY+C+ CG+ FS ++ H TH
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 121 THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
T GE Y C++C + ++ S H T +V+P CP C FT K N+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP------CPFCFKEFTRKDNM 56
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 66 PFECDV--CGKRFAQKSTLNTHKRVH 89
PF+C CGKRF+ L TH ++H
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIH 26
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVH 89
E+PF C CG RF++ L+ H+R H
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSH 37
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 65 RPFECDVCGKRFAQKSTLNTH 85
+ ++C C KRFA S L TH
Sbjct: 1 KTYQCQYCEKRFADSSNLKTH 21
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 128 YECEICGKRFSQKSACNTHKRT 149
Y C +C RFS SA + H R+
Sbjct: 99 YVCNVCNARFSTMSALSEHLRS 120
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 128 YECEICGKRFSQKSACNTHKRT 149
Y C +C RFS SA + H R+
Sbjct: 117 YVCNVCNARFSTMSALSEHLRS 138
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+P+ C +C +R SA H RTH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,307,568
Number of Sequences: 62578
Number of extensions: 189725
Number of successful extensions: 1327
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 707
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)