RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3356
(180 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 41.6 bits (98), Expect = 4e-06
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 114 NLEVHMRTHTGERPYECEICGKRFSQ 139
NL HMRTHTGE+PY+C +CGK FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 38.9 bits (91), Expect = 3e-05
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQ 78
+ HMRTHTGE+P++C VCGK F+
Sbjct: 3 RRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.2 bits (58), Expect = 1.5
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 82 LNTHKRVHISYLHVKDKPYHCTECEATFS 110
L H R H +KPY C C +FS
Sbjct: 2 LRRHMRTHT-----GEKPYKCPVCGKSFS 25
Score = 24.7 bits (54), Expect = 4.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 156 RVHPKDRPFHCPACEGMFTT 175
R H ++P+ CP C F++
Sbjct: 7 RTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 30.4 bits (69), Expect = 0.041
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 68 ECDVCGKRFAQKSTLNTHKRVH 89
+C CGK F++KS L H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.3 bits (61), Expect = 0.47
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 102 CTECEATFSWKQNLEVHMRTH 122
C +C +FS K NL+ H+RTH
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 26.5 bits (59), Expect = 1.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 129 ECEICGKRFSQKSACNTHKRTH 150
+C CGK FS+KS H RTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 33.5 bits (76), Expect = 0.052
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 63 GERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR 120
+P++C V C K++ ++ L H +H + + K E FS K
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYH-MLH-GHQNQKLHENPSPEKMNIFSAK-------- 395
Query: 121 THTGERPYECEICGKRFSQKSACNTHKRTH 150
++PY CE+C KR+ + H R H
Sbjct: 396 ----DKPYRCEVCDKRYKNLNGLKYH-RKH 420
Score = 29.7 bits (66), Expect = 0.86
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 124 GERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHP------------KDRPFHCPAC 169
+PY+C + C K++ ++ H H ++H KD+P+ C C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHML-HGHQNQKLHENPSPEKMNIFSAKDKPYRCEVC 404
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 29.7 bits (67), Expect = 0.069
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 100 YHCTECEATFSWKQNLEVHMRTH 122
Y C EC F K L HMRTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.7 bits (67), Expect = 0.079
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
Y C CGK F KSA H RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.10
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
+ C CGK F KS L H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|219610 pfam07857, DUF1632, CEO family (DUF1632). These sequences are
found in hypothetical eukaryotic proteins of unknown
function. The region concerned is approximately 280
residues long. This family has been termed the CEO
family for C. elegans ORF.
Length = 254
Score = 30.5 bits (69), Expect = 0.35
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 8 TSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFS------FLFGPLLVPQIHMRTH 61
TS + I+++ F R FL+G VP I+++ +
Sbjct: 149 TSLELEHQDEIEQDLSNATEDSDFDAKRHPHHRIVCILLAIVSGFLYGSTFVPIIYIKDN 208
Query: 62 TGERPF 67
P
Sbjct: 209 PPLYPG 214
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 28.5 bits (63), Expect = 0.42
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
YEC ICG+ + ++ + TH R H
Sbjct: 6 YECPICGEIYIKRKSMITHLRKH 28
Score = 27.7 bits (61), Expect = 0.77
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKD 97
+EC +CG+ + ++ ++ TH R H + L + +
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSN 36
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 30.0 bits (67), Expect = 0.75
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 95 VKDKPYHCTECEATFSWKQNLEVHMRT--HTGE--RPYEC--EICGKRFSQKSACNTHKR 148
P +C +FS L H+R+ H+GE +P+ C +CGK FS+ A H
Sbjct: 285 GFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL 344
Query: 149 THIP 152
H
Sbjct: 345 LHTS 348
Score = 28.9 bits (64), Expect = 1.8
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTH 122
RP C C F++ L H R H +KP C+ C+ +FS L H+RTH
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIR-----SHTGEKPSQCSYSGCDKSFSRPLELSRHLRTH 86
Query: 123 TGERPYECEICGKRFSQKSA 142
+ K++
Sbjct: 87 HNNPSDLNSKSLPLSNSKAS 106
>gnl|CDD|128804 smart00531, TFIIE, Transcription initiation factor IIE.
Length = 147
Score = 28.9 bits (65), Expect = 0.85
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 112 KQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG 171
++ LE + T Y+C C +++ A ++ D F CP C
Sbjct: 84 RKRLEDKLEDETNNAYYKCPNCQSKYTFLEAN------------QLLDMDGTFTCPRCGE 131
Query: 172 M 172
Sbjct: 132 E 132
>gnl|CDD|152108 pfam11672, DUF3268, Protein of unknown function (DUF3268). This
family of proteins has no known function.
Length = 102
Score = 28.1 bits (63), Expect = 1.0
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER-PYECEICGKRFSQKSACNTHKRTHIP 152
KP C C + V+ R + Y C C H T IP
Sbjct: 1 KPVRCPYCGGKVELRPAEVVYGRGYGDWPYLYLCTGCDAYVG------LHPGTDIP 50
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 26.4 bits (59), Expect = 1.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
C VCGK F+ L HK+ H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 24.9 bits (55), Expect = 3.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 100 YHCTECEATFSWKQNLEVHMRTH 122
+ C C TFS Q L H ++H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 24.5 bits (54), Expect = 5.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
+ C +CGK FS A HK++H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/70 (15%), Positives = 16/70 (22%), Gaps = 24/70 (34%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKD 161
C +C N + + H C CG + +
Sbjct: 438 CRDCGYIAEC-PNCDSPLTLHKATGQLRCHYCG-----------------------YQEP 473
Query: 162 RPFHCPACEG 171
P CP C
Sbjct: 474 IPQSCPECGS 483
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 25.7 bits (56), Expect = 2.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
++C +CGK FS K A H R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.3 bits (55), Expect = 2.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 100 YHCTECEATFSWKQNLEVHMRTH 122
+ C C +FS K L+ H+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.3 bits (55), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
F+C +CGK F+ K L H R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 28.4 bits (64), Expect = 2.2
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 112 KQNLE------VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
K+NLE V T G+ Y CE CGK+ + K LP V
Sbjct: 150 KKNLEESLDAYVQGETLEGDNKYFCEKCGKK------VDAEKGVCFKKLPPV 195
>gnl|CDD|187811 cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; signature gene for type III;
also known as Csm1 family.
Length = 650
Score = 28.1 bits (63), Expect = 3.3
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 37 NEKRFFFFSFLFGPLLVPQIHMRTHTGERPFECDVCGKRFAQKS 80
+EK+ +S+L L P+ G R EC VCG+
Sbjct: 365 SEKKLKRYSYLELAALNPRDSKEGSKGTR--ECKVCGREEPIAE 406
>gnl|CDD|162595 TIGR01908, cas_CXXC_CXXC, CRISPR-associated protein Cas8a1/Cst1,
subtype I-B/TNEAP. CRISPR is a term for Clustered,
Regularly Interspaced Short Palidromic Repeats. A number
of protein families appear only in association with
these repeats and are designated Cas (CRISPR-Associated)
proteins. This (revised) model describes a conserved
region from an otherwise highly divergent protein found
in the Tneap subtype of CRISPR/Cas regions. This
Cys-rich region features two motifs of CXXC [Mobile and
extrachromosomal element functions, Other].
Length = 309
Score = 27.8 bits (62), Expect = 3.6
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHP---------KDRPFHCPACE 170
C CG+R ++K +T T IP + + K + C CE
Sbjct: 4 NSPLCINCGERHAKK---DTIFDTEIPLIGGLSGGVPNYFWNGKPKAPLCEICE 54
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 27.1 bits (61), Expect = 4.2
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICG 134
CT+C + + R E C CG
Sbjct: 110 VRCTKCGKEYPRDELQADIDR----EEVPRCPKCG 140
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 27.5 bits (62), Expect = 5.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 135 KRFSQKSACNTHKRTHIPYLPRVHPKDRPF-HCPACEGM 172
FS+ AC + PR+ + PF CP C+G+
Sbjct: 240 LLFSENFACPVCGFSIPELEPRLFSFNSPFGACPTCDGL 278
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 27.1 bits (61), Expect = 5.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGERPYECEICG 134
CT+C T+ + L+ P C CG
Sbjct: 124 RCTKCGQTYDLDEYLK--------PEPPRCPKCG 149
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 27.3 bits (61), Expect = 5.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 135 KRFSQKSACNTHKRTHIPYLPRVHPKDRPF-HCPACEGM 172
+ FS+K AC + PR+ + P+ CP C G+
Sbjct: 246 ELFSEKFACPECGFSLPELEPRLFSFNSPYGACPECSGL 284
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 26.4 bits (58), Expect = 5.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTH 146
PY C C FS +L+ H+R E C +CGK F + H
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIR--YTEHSKVCPVCGKEFRNTDSTLDH 118
>gnl|CDD|187796 cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as CXXC_CXXC family.
Length = 334
Score = 27.1 bits (60), Expect = 5.4
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 130 CEICGKRFSQKSACNTHKRTHIPYLPRVHP---------KDRPFHCPACE 170
C CG+R ++K +T T I ++ K + C CE
Sbjct: 1 CINCGERHAKK---DTIFDTGISLFGGLNGDVPNFFWNGKPKAPLCEICE 47
>gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic
peptide receptor (NPR) family. Ligand binding domain
of natriuretic peptide receptor (NPR) family which
consists of three different subtypes: type A
natriuretic peptide receptor (NPR-A, or GC-A), type B
natriuretic peptide receptors (NPR-B, or GC-B), and
type C natriuretic peptide receptor (NPR-C). There are
three types of natriuretic peptide (NP) ligands
specific to the receptors: atrial NP (ANP), brain or
B-type NP (BNP), and C-type NP (CNP). The NP family is
thought to have arisen through gene duplication during
evolution and plays an essential role in cardiovascular
and body fluid homeostasis. ANP and BNP bind mainly to
NPR-A, while CNP binds specifically to NPR-B. Both
NPR-A and NPR-B have guanylyl cyclase catalytic
activity and produces intracellular secondary messenger
cGMP in response to peptide-ligand binding.
Consequently, the NPR-A activation results in
vasodilation and inhibition of vascular smooth muscle
cell proliferation. NPR-C acts as the receptor for all
the three members of NP family, and functions as a
clearance receptor. Unlike NPR-A and -B, NPR-C lacks an
intracellular guanylyl cyclase domain and is thought to
exert biological actions by sequestration of released
natriuretic peptides and/or inhibition of adenylyl
cyclase.
Length = 396
Score = 26.8 bits (60), Expect = 8.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 1 ACSSKWITSPSVTFDINIQKNPLVFI-PACVF 31
CS +P V D+ Q P F+ P C +
Sbjct: 55 GCSES--EAPLVAVDLYFQHKPDAFLGPGCEY 84
>gnl|CDD|202017 pfam01868, UPF0086, Domain of unknown function UPF0086. This
family consists of several archaeal and eukaryotic
proteins. The archaeal proteins are found to be
expressed within ribosomal operons and several of the
sequences are described as ribonuclease P protein
subunit p29 proteins.
Length = 89
Score = 25.3 bits (56), Expect = 8.1
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 13 TFDINIQKNPLVFIP--ACVFRFSVENEKRF 41
T I +K IP VFRF + + ++
Sbjct: 41 TLVIETEKGREKTIPKDGSVFRFELPDGEKV 71
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a
zinc-finger domain with the CxxCx(12)Hx(6)H motif,
found in multiple copies in a wide range of proteins
from plants to metazoans. Some member proteins,
particularly those from plants, are annotated as being
RNA-binding.
Length = 25
Score = 23.6 bits (52), Expect = 8.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 67 FECDVCGKRFAQKSTLNTHKR 87
F C++C F +S L +H R
Sbjct: 1 FYCELCNVTFTSESQLKSHLR 21
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.466
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,731,071
Number of extensions: 737351
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 74
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.2 bits)