RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3356
(180 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 131 bits (331), Expect = 2e-40
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 60 THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHM 119
+ P +C+VCGK F++K L TH R H KPY C C+ + +L H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTG-----VKPYKCKTCDYAAADSSSLNKHL 56
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
R H+ ERP++C+IC S H R+H
Sbjct: 57 RIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 108 bits (273), Expect = 2e-31
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
+ HMR HTG +P++C C A S+LN H R+ H ++P+ C C
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-----HSDERPFKCQICPYASRNSSQ 79
Query: 115 LEVHMRTHTGERPYEC 130
L VH+R+HTG+
Sbjct: 80 LTVHLRSHTGDSGPSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 131 bits (332), Expect = 2e-40
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
++ F C CG+ F + L H+R H ++PY C C F + +
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD-----ERPYTCDICHKAFRRQDH 60
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
L H H+ E+P++C+ CGK F Q HK H
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 106 bits (268), Expect = 9e-31
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
IH RTHT ERP+ CD+C K F ++ L H+ +H K+KP+ C EC F + L
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH-----SKEKPFKCQECGKGFCQSRTL 89
Query: 116 EVHMRTHTGERPYEC 130
VH H
Sbjct: 90 AVHKTLHMQTSSPTA 104
Score = 96.0 bits (240), Expect = 2e-26
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 79 KSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFS 138
S + + + K + C C F+ NL +H RTHT ERPY C+IC K F
Sbjct: 2 SSGSSGGRLPSKT-----KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFR 56
Query: 139 QKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
++ H+ H K++PF C C F + L
Sbjct: 57 RQDHLRDHRYIHS--------KEKPFKCQECGKGFCQSRTL 89
Score = 64.8 bits (159), Expect = 2e-14
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
H H+ E+PF+C CGK F Q TL HK +H+ +
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM-----QTSSPTAA 105
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 131 bits (331), Expect = 5e-40
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
Q+H R HTGE+P++CD C +RF++ L H+R H KP+ C C+ FS
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG-----VKPFQCKTCQRKFSRS 79
Query: 113 QNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
+L+ H RTHTGE+P+ C C K+F++ H H
Sbjct: 80 DHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 114 bits (289), Expect = 1e-33
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 62 TGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEV 117
+ +RPF C C KR+ + S L H R H +KPY C +CE FS L+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-----EKPYQCDFKDCERRFSRSDQLKR 56
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
H R HTG +P++C+ C ++FS+ TH RTH
Sbjct: 57 HQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 81.8 bits (203), Expect = 7e-21
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 98 KPYHCTE--CEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPY 153
+P+ C C + +L++H R HTGE+PY+C+ C +RFS+ H+R H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-- 62
Query: 154 LPRVHPKDRPFHCPACEGMFTTKQNL 179
+PF C C+ F+ +L
Sbjct: 63 ------GVKPFQCKTCQRKFSRSDHL 82
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 130 bits (330), Expect = 7e-40
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
+H R HTGE+PFEC CGK + +K L H+ + ++ ++ + C+ C+ TF + L
Sbjct: 25 VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC--MNRSEQVFTCSVCQETFRRRMEL 82
Query: 116 EVHMRTHTGERPYECEICGKRFSQKSACNTHK-RTH 150
+HM +HTGE PY+C C ++F QK +H + H
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 119 bits (301), Expect = 2e-35
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR 120
+G EC C K+F K L H R H +KP+ C +C + K+NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTG-----EKPFECPKCGKCYFRKENLLEHEA 56
Query: 121 ---THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQ 177
+ E+ + C +C + F ++ H +H + P+ C +C F K+
Sbjct: 57 RNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHT--------GEMPYKCSSCSQQFMQKK 108
Query: 178 NL 179
+L
Sbjct: 109 DL 110
Score = 86.4 bits (215), Expect = 1e-22
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 55 QIHMR---THTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSW 111
H + E+ F C VC + F ++ L H H + PY C+ C F
Sbjct: 52 LEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG-----EMPYKCSSCSQQFMQ 106
Query: 112 KQNLEVHM-RTHTGER 126
K++L+ HM + H+G
Sbjct: 107 KKDLQSHMIKLHSGPS 122
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 132 bits (334), Expect = 1e-39
Identities = 49/96 (51%), Positives = 63/96 (65%), Gaps = 5/96 (5%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
+ H RTHTGE+P+ C CGK F+Q + L H+R H +KPY C EC +FS + N
Sbjct: 94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-----EKPYKCPECGKSFSREDN 148
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
L H RTHTGE+PY+C CGK FS++ A N H+RTH
Sbjct: 149 LHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 131 bits (333), Expect = 2e-39
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 13/125 (10%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
H RTHTGE+P++C CGK F+Q++ L H+R H +KPY C EC +FS +
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG-----EKPYACPECGKSFSQLAH 120
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
L H RTHTGE+PY+C CGK FS++ +TH+RTH ++P+ CP C F+
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT--------GEKPYKCPECGKSFS 172
Query: 175 TKQNL 179
+ L
Sbjct: 173 RRDAL 177
Score = 131 bits (331), Expect = 3e-39
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 13/125 (10%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
GE+P+ C CGK F++ L H+R H +KPY C EC +FS K++
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTG-----EKPYKCPECGKSFSDKKD 64
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
L H RTHTGE+PY+C CGK FSQ++ H+RTH ++P+ CP C F+
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT--------GEKPYACPECGKSFS 116
Query: 175 TKQNL 179
+L
Sbjct: 117 QLAHL 121
Score = 96.7 bits (242), Expect = 8e-26
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 76 FAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGK 135
S+ + +KPY C EC +FS +L H RTHTGE+PY+C CGK
Sbjct: 3 EFGSSSSVAQAALEPG-----EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGK 57
Query: 136 RFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
FS K H+RTH ++P+ CP C F+ + NL
Sbjct: 58 SFSDKKDLTRHQRTHT--------GEKPYKCPECGKSFSQRANL 93
Score = 96.0 bits (240), Expect = 2e-25
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
+ H RTHTGE+P++C CGK F+++ L+TH+R H +KPY C EC +FS +
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG-----EKPYKCPECGKSFSRRDA 176
Query: 115 LEVHMRTHTGERP 127
L VH RTHTG++
Sbjct: 177 LNVHQRTHTGKKT 189
Score = 70.2 bits (173), Expect = 1e-15
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 108 TFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP 167
+ + GE+PY C CGK FS+ H+RTH ++P+ CP
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT--------GEKPYKCP 53
Query: 168 ACEGMFTTKQNL 179
C F+ K++L
Sbjct: 54 ECGKSFSDKKDL 65
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 125 bits (317), Expect = 5e-38
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 58 MRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEV 117
+G++ + C CGK F KS + H +H+ +PY C C F K +L
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLG-----LRPYGCGVCGKKFKMKHHLVG 55
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQ 177
HM+ HTG +PYEC IC KRF + + H+ + + E T
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRD--SFHRHVTS--------CTKSYEAAKAEQNTTEAS 105
Query: 178 NL 179
Sbjct: 106 GP 107
Score = 118 bits (299), Expect = 2e-35
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
HM H G RP+ C VCGK+F K L H ++H KPY C C F W+ +
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG-----IKPYECNICAKRFMWRDSF 81
Query: 116 EVHMRTHTGERPYECEICGKRFSQKSA 142
H + + YE + ++ S
Sbjct: 82 --HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 48.6 bits (117), Expect = 3e-08
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNT 84
H + + +E + + S ++
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 121 bits (305), Expect = 4e-36
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWK 112
+ H+ TH G R C CGK F + S L H+ VH +KP+ CT C FS
Sbjct: 24 RKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG-----EKPFQCTFEGCGKRFSLD 77
Query: 113 QNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
NL H+R HTG+RPY C C K+F+Q + +H TH
Sbjct: 78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 111 bits (279), Expect = 4e-32
Identities = 39/122 (31%), Positives = 47/122 (38%), Gaps = 20/122 (16%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
R C C K F S + H H + + C EC F L+ H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH------GPRVHVCAECGKAFVESSKLKRHQLV 56
Query: 122 HTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA--CEGMFTTKQ 177
HTGE+P++C CGKRFS TH R H DRP+ CP C F
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT--------GDRPYVCPFDGCNKKFAQST 108
Query: 178 NL 179
NL
Sbjct: 109 NL 110
Score = 98.0 bits (245), Expect = 4e-27
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHC--TECEATFS 110
+ H HTGE+PF+C CGKRF+ L TH R+H D+PY C C F+
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG-----DRPYVCPFDGCNKKFA 105
Query: 111 WKQNLEVHMRTHTGERPYE 129
NL+ H+ TH + +
Sbjct: 106 QSTNLKSHILTHAKAKNNQ 124
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 119 bits (301), Expect = 6e-36
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
RTHTGE+P+ C C K F QK L+ H + + + + C++C TF+ +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY-HDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 115 LEVHMRTHTGERPYECEICGKRF 137
+ H G E E G
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 69.5 bits (171), Expect = 2e-16
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMF 173
+ RTHTGE+PY C C K F QK + H + + + F C C F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH----DPNFVPAAFVCSKCGKTF 57
Query: 174 TTKQNL 179
T + +
Sbjct: 58 TRRNTM 63
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 117 bits (295), Expect = 6e-35
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR 120
+G C++CGK F LN HK H +KPY C C F K + H+R
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSG-----EKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 121 THTGE--RPYECEICGKRFSQKSACNTH-KRTH 150
+H G +PY C+ CGK FS+ N H K+ H
Sbjct: 57 SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 92.9 bits (232), Expect = 2e-25
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
H +H+GE+P+ C VCG RF +K ++ H R H KPY C C FS +
Sbjct: 24 NRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG---SVGKPYICQSCGKGFSRPDH 80
Query: 115 LEVHM-RTHTGER 126
L H+ + H+G
Sbjct: 81 LNGHIKQVHSGPS 93
Score = 87.2 bits (217), Expect = 4e-23
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
C C F +L H +H+GE+PY C +CG RF +K + H R+H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH------D 59
Query: 158 HPKDRPFHCPACEGMFTTKQNL 179
+P+ C +C F+ +L
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHL 81
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 119 bits (300), Expect = 1e-34
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 19/131 (14%)
Query: 57 HMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWK 112
+ + C CG + + L H H +KP+ C E CE F+
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTG-----EKPFPCKEEGCEKGFTSL 57
Query: 113 QNLEVHMRTHTGERPYECE--ICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA-- 168
+L H THTGE+ + C+ C RF+ K+ H + K + C
Sbjct: 58 HHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH------NIKICVYVCHFEN 111
Query: 169 CEGMFTTKQNL 179
C F L
Sbjct: 112 CGKAFKKHNQL 122
Score = 115 bits (291), Expect = 3e-33
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 55 QIHMRTHTGERPFECD--VCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFS 110
Q H+ HTGE+PF C C K F L H H +K + C C+ F+
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-----EKNFTCDSDGCDLRFT 85
Query: 111 WKQNLEVHMRTHTGER--PYECEI--CGKRFSQKSACNTHKRTH 150
K N++ H + Y C CGK F + + H+ +H
Sbjct: 86 TKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 97.7 bits (244), Expect = 4e-26
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 16/105 (15%)
Query: 55 QIHMRTHTGER--PFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEAT 108
+ H + + C CGK F + + L H+ H PY C C+
Sbjct: 91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-----QLPYECPHEGCDKR 145
Query: 109 FSWKQNLEVHMRTHTG---ERPYECEICGKRFSQKSACNTHKRTH 150
FS L+ H + H G ++ C GK ++ H
Sbjct: 146 FSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL--KHVAECH 188
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 118 bits (297), Expect = 2e-34
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFS 110
+HMR HTGE+P +C C K +++ L TH R H +KPY C C FS
Sbjct: 56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG-----EKPYMCEHEGCSKAFS 110
Query: 111 WKQNLEVHM-RTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
+ H RTH+ E+PY C++ C KR++ S+ H +T
Sbjct: 111 NASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 109 bits (275), Expect = 3e-31
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 55 QIHM---RTHTGERPFECDVCG-----KRFAQKSTLNTHKRVHISYLHVKDKPYHCT--E 104
H+ H + F C G + F + L H R H +KP+ CT
Sbjct: 20 VHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG-----EKPHKCTFEG 74
Query: 105 CEATFSWKQNLEVHMRTHTGERPYECE--ICGKRFSQKSACNTHKRTHIPYLPRVHPKDR 162
C ++S +NL+ H+R+HTGE+PY CE C K FS S H+ R H ++
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN-------RTHSNEK 127
Query: 163 PFHCPACE 170
P+ C
Sbjct: 128 PYVCKLPG 135
Score = 83.0 bits (206), Expect = 6e-21
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 55 QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHK-RVHISYLHVKDKPYHCT--ECEATF 109
+ H+R+HTGE+P+ C + C K F+ S H+ R H + +KPY C C +
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN-----EKPYVCKLPGCTKRY 140
Query: 110 SWKQNLEVHMRTHTG 124
+ +L H++T G
Sbjct: 141 TDPSSLRKHVKTVHG 155
Score = 71.1 bits (175), Expect = 3e-16
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 18/92 (19%)
Query: 98 KPYHCTECEATFSWKQNLEVHM---RTHTGERPYECEICG-----KRFSQKSACNTHKRT 149
C F ++ L H+ H + + C G + F + H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 150 HIPYLPRVHPKDRPFHCPA--CEGMFTTKQNL 179
H ++P C C ++ +NL
Sbjct: 62 HT--------GEKPHKCTFEGCRKSYSRLENL 85
Score = 46.4 bits (111), Expect = 4e-07
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQ 177
E + C + F + H + +H + + F C +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSE-----HIHGERKEFVCHWGGCSRELRP 48
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 114 bits (287), Expect = 9e-34
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRT 121
ERP+ C V C +RF+Q +L H R+H KP+ C C FS +L H+RT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG-----QKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
HTGE+P+ C+ICG++F++ H + H
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 98.3 bits (246), Expect = 2e-27
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H+R HTG++PF+C +C + F++ L TH R H +KP+ C C F+ +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-----EKPFACDICGRKFARSDERK 79
Query: 117 VHMRTHTGER 126
H + H ++
Sbjct: 80 RHTKIHLRQK 89
Score = 83.7 bits (208), Expect = 6e-22
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 98 KPYHC--TECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLP 155
+PY C C+ FS +L H+R HTG++P++C IC + FS+ TH RTH
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT---- 58
Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
++PF C C F
Sbjct: 59 ----GEKPFACDICGRKFARSDER 78
Score = 64.0 bits (157), Expect = 2e-14
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
H+RTHTGE+PF CD+CG++FA+ H ++H
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 115 bits (289), Expect = 3e-33
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 57 HMRTHTGERPF---------ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--EC 105
H+ P EC GK F K L H RVH +KP+ C C
Sbjct: 44 HVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH-----TGEKPFPCPFPGC 98
Query: 106 EATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
F+ +NL++H RTHTGE+P++CE C +RF+ S H H
Sbjct: 99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 114 bits (288), Expect = 3e-33
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 48 FGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYH------ 101
P+ + C + F+ L TH + HV P
Sbjct: 7 GQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME----HV-GGPEQNNHVCY 61
Query: 102 ---CTECEATFSWKQNLEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTH 150
C +F K L H+R HTGE+P+ C CGK F++ HKRTH
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 95.4 bits (238), Expect = 1e-25
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFS 110
H+R HTGE+PF C CGK FA+ L HKR H +KP+ C C+ F+
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG-----EKPFKCEFEGCDRRFA 133
Query: 111 WKQNLEVHMRTHTGERPYEC 130
+ + HM HT ++
Sbjct: 134 NSSDRKKHMHVHTSDKSGPS 153
Score = 78.5 bits (194), Expect = 4e-19
Identities = 26/119 (21%), Positives = 34/119 (28%), Gaps = 24/119 (20%)
Query: 72 CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPY--- 128
G + K + C+ TFS L H+ P
Sbjct: 3 SGSSGQPIKQELSCKWI-----DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
Query: 129 ------ECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA--CEGMFTTKQNL 179
EC GK F K H R H ++PF CP C +F +NL
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIRVHT--------GEKPFPCPFPGCGKIFARSENL 108
Score = 68.5 bits (168), Expect = 2e-15
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+IH RTHTGE+PF+C+ C +RFA S H VH S DK +
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS-----DKSGPSS 154
Score = 58.8 bits (143), Expect = 1e-11
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 5/79 (6%)
Query: 104 ECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH---IPYLPRVHPK 160
++ + + + C + FS TH P + +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE--QNNHV 59
Query: 161 DRPFHCPACEGMFTTKQNL 179
CP F K L
Sbjct: 60 CYWEECPREGKSFKAKYKL 78
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 111 bits (280), Expect = 8e-33
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
F+C +CGK F + STL+TH +H +PY C C F K +++ H HTGE+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD-----TRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 127 PYECEICGKRFSQKSACNTHKRTH 150
P++C++CGK FSQ S TH R H
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKH 80
Score = 78.2 bits (194), Expect = 8e-20
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHP 159
+ C C +F L H+ H+ RPY C+ CGKRF QKS H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT-------- 53
Query: 160 KDRPFHCPACEGMFTTKQNL 179
++P C C F+ NL
Sbjct: 54 GEKPHKCQVCGKAFSQSSNL 73
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 109 bits (274), Expect = 5e-32
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
RTH+GE+P+EC +C RF Q T+ H + +HC C+ + K +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE---NVAKFHCPHCDTVIARKSD 60
Query: 115 LEVHMRT-HTGERPY 128
L VH+R H+ P
Sbjct: 61 LGVHLRKQHSYSGPS 75
Score = 80.3 bits (199), Expect = 1e-20
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMF 173
+ RTH+GE+PYEC IC RF+Q H FHCP C+ +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH------TENVAKFHCPHCDTVI 55
Query: 174 TTKQNL 179
K +L
Sbjct: 56 ARKSDL 61
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 103 bits (258), Expect = 1e-29
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 61 HTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLE 116
+G CD CG+ F+ + LN HK+ H+ K + C E C +F++K++L+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQ----HIHQKSFSCPEPACGKSFNFKKHLK 57
Query: 117 VHMRTHTGERPYECEICGKRF 137
HM+ H+ R Y CE G
Sbjct: 58 EHMKLHSDTRDYICEFSGPSS 78
Score = 45.6 bits (109), Expect = 2e-07
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 55 QIHMRTHTGERPFECDVCGKRF 76
+ HM+ H+ R + C+ G
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 102 bits (257), Expect = 3e-29
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG 124
+PF+C +C + F++ L TH R H +KP+ C C F+ + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG-----EKPFACDICGRKFARSDERKRHRDIQH- 55
Query: 125 ERPYECEICGKRFSQKSACNTHK---RTH 150
P + + S+ +
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 94.9 bits (237), Expect = 3e-26
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
H+RTHTGE+PF CD+CG++FA+ H+ + P + E S +
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ------HILPILEDKVEELLSKNYH 73
Query: 115 LEVH---MRTHTGER 126
LE ++ GER
Sbjct: 74 LENEVARLKKLVGER 88
Score = 92.6 bits (231), Expect = 2e-25
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
KP+ C C FS +L H+RTHTGE+P+ C+ICG++F++ H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ------- 54
Query: 158 HPKDRPFHCPACEGMFTTKQNLE 180
P E + + +LE
Sbjct: 55 --HILPILEDKVEELLSKNYHLE 75
Score = 25.5 bits (57), Expect = 4.8
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 51 LLVPQIHMRTHTGER 65
L ++ GER
Sbjct: 74 LENEVARLKKLVGER 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 101 bits (255), Expect = 3e-29
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
H ++P++CD C F K L +HK VH +KPY C C A F+ N
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG-----EKPYRCNICGAQFNRPAN 60
Query: 115 LEVHMRTHTGERPY 128
L+ H R H+GE+PY
Sbjct: 61 LKTHTRIHSGEKPY 74
Score = 94.8 bits (237), Expect = 2e-26
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 80 STLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQ 139
+ H + S DKPY C C+A+F +K NL H HTGE+PY C ICG +F++
Sbjct: 3 HHHHHHSHMTHS-----DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57
Query: 140 KSACNTHKRTH 150
+ TH R H
Sbjct: 58 PANLKTHTRIH 68
Score = 64.4 bits (158), Expect = 1e-14
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMF 173
+ H ++PY+C+ C F K +HK H ++P+ C C F
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHT--------GEKPYRCNICGAQF 55
Query: 174 TTKQNL 179
NL
Sbjct: 56 NRPANL 61
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 102 bits (256), Expect = 4e-29
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVH 118
T + CGK + + S L H R H +KPYHC C F+ L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG-----EKPYHCDWDGCGWKFARSDELTRH 56
Query: 119 MRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
R HTG RP++C+ C + FS+ H + H
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 79.5 bits (197), Expect = 3e-20
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHI 151
C T++ +L+ H+RTHTGE+PY C + CG +F++ H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 152 PYLPRVHPKDRPFHCPACEGMFT 174
RPF C C+ F+
Sbjct: 62 --------GHRPFQCQKCDRAFS 76
Score = 60.2 bits (147), Expect = 6e-13
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
H R HTG RPF+C C + F++ L H + H
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 98.3 bits (246), Expect = 1e-27
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
R ++CD CGK F+ S L+ H+R H +KPY C EC F + +L
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG-----EKPYKCDECGKAFIQRSHLI 63
Query: 117 VHMRTHTGERPYE 129
H R HTG P
Sbjct: 64 GHHRVHTGSGPSS 76
Score = 94.0 bits (235), Expect = 4e-26
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 77 AQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKR 136
+ + + Y C EC +FS +L H RTHTGE+PY+C+ CGK
Sbjct: 1 GSSGSSGRSEWQQRE-----RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKA 55
Query: 137 FSQKSACNTHKRTH 150
F Q+S H R H
Sbjct: 56 FIQRSHLIGHHRVH 69
Score = 60.1 bits (147), Expect = 7e-13
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
H RTHTGE+P++CD CGK F Q+S L H RVH
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 97.2 bits (243), Expect = 2e-27
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH 118
+ + P +C C + K+ L H+R+H + D+P+ C C NL H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCT-----DRPFKCNYCSFDTKQPSNLSKH 56
Query: 119 MRTHTGERPYEC 130
M+ G+
Sbjct: 57 MKKFHGDMSGPS 68
Score = 67.5 bits (166), Expect = 6e-16
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+IH R H +RPF+C+ C Q S L+ H +
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 62.5 bits (153), Expect = 5e-14
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
+ + P +C C S K+A H+R H DRPF C C NL
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHC--------TDRPFKCNYCSFDTKQPSNL 53
Score = 25.5 bits (57), Expect = 3.1
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 55 QIHMRTHTGERPFEC 69
HM+ G+
Sbjct: 54 SKHMKKFHGDMSGPS 68
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 94.5 bits (236), Expect = 3e-26
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H+GE+P+ C CGK F++ S L H+RVH +KPY C EC FS L
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG-----EKPYKCLECGKAFSQNSGLI 59
Query: 117 VHMRTHTGERPY 128
H R HT
Sbjct: 60 NHQRIHTSGPSS 71
Score = 58.6 bits (143), Expect = 2e-12
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFT 174
H+GE+PY C CGK FS+ S H+R VH ++P+ C C F+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR--------VHTGEKPYKCLECGKAFS 53
Query: 175 TKQNL 179
L
Sbjct: 54 QNSGL 58
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 95.0 bits (237), Expect = 4e-26
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 48 FGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT--EC 105
G R H + P C K + + S L H R H +KPY CT C
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTG-----EKPYKCTWEGC 53
Query: 106 EATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ F+ L H R HTG +P++C +C + FS+ H + H
Sbjct: 54 DWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 81.9 bits (203), Expect = 4e-21
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 55 QIHMRTHTGERPFEC--DVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
+ H+RTHTGE+P++C + C RFA+ L H R H KP+ C C +FS
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-----TGAKPFQCGVCNRSFSRS 88
Query: 113 QNLEVHMRTHT 123
+L +HM+ H
Sbjct: 89 DHLALHMKRHQ 99
Score = 73.8 bits (182), Expect = 6e-18
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 76 FAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC--EIC 133
+R+H C ++ +L+ H+RTHTGE+PY+C E C
Sbjct: 3 SGSSGPDLEKRRIHYC---------DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGC 53
Query: 134 GKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
RF++ H R H +PF C C F+ +L
Sbjct: 54 DWRFARSDELTRHYRKHT--------GAKPFQCGVCNRSFSRSDHL 91
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 90.5 bits (225), Expect = 1e-24
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMR 120
+G +C++CG QK++LN H+R H V + C C F ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAE--TVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 121 T-HTGERPYECEICGKRF 137
H E G
Sbjct: 60 KSHPALLLAPQESSGPSS 77
Score = 63.6 bits (155), Expect = 3e-14
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
+G +CEICG QK++ N H+R H F C C F ++
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH-----AETVAALRFPCEFCGKRFEKPDSV 54
Score = 60.5 bits (147), Expect = 5e-13
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 55 QIHMRTHT---GERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATF 109
H R H F C+ CGKRF + ++ H+ H +
Sbjct: 24 NWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS----HPALLLAPQESSGPSS 77
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 88.8 bits (221), Expect = 4e-24
Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 31/92 (33%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH 118
T GE + C VC + + S H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTS----------------------------- 33
Query: 119 MRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ Y C C K F++K H +
Sbjct: 34 --HKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 70.3 bits (173), Expect = 6e-17
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
T GE Y C++C + ++ S H T + + CP C FT K N+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTS------HKRNVKVYPCPFCFKEFTRKDNM 56
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 76.8 bits (190), Expect = 1e-19
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTH-KRTH 150
+ + C C F+ +++L+ H R+HT E+PY C +C + F+++ H ++ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 69.4 bits (171), Expect = 9e-17
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHM-RTHT 123
R F C+VC + FA++ L H R H +KPY C C F+ + L H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-----HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Query: 124 GE 125
G
Sbjct: 56 GN 57
Score = 57.5 bits (140), Expect = 4e-12
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTH-KRVH 89
+ H R+HT E+P+ C +C + F ++ L H +++H
Sbjct: 19 KRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 45.6 bits (109), Expect = 1e-07
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
R + CE+C + F+++ H R+H ++P+ C C FT + L
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT--------NEKPYPCGLCNRAFTRRDLL 46
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 76.3 bits (187), Expect = 9e-19
Identities = 16/99 (16%), Positives = 29/99 (29%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
+++ TG F C C + L H Y + + + K++
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS 67
Query: 115 LEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPY 153
L ++ +C CG F + H Y
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Score = 58.2 bits (140), Expect = 8e-12
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 77 AQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKR 136
+ S+ + + + C +C A + L VHM TG +
Sbjct: 2 SSGSSGKLYGSIF-----TGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNN 55
Query: 137 FSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
++ + + + + C C F + Q+L
Sbjct: 56 NPKRWSKPRKRSLLE--MEGKEDAQKVLKCMYCGHSFESLQDLS 97
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 74.2 bits (183), Expect = 3e-18
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 67 FECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE--CEATFSWKQNLEVHMRTH 122
+ C CGK F + + L H+ H PY C C+ FS L+ H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ-----QLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Query: 123 TGERPYECEICGKRFSQKSA-CNTHKRTH 150
G + + C + H
Sbjct: 57 AGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 67.3 bits (165), Expect = 1e-15
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 100 YHCT--ECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLP 155
Y C C F L+VH +HT + PYEC E C KRFS S H++ H Y
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY-- 59
Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
+C + T
Sbjct: 60 ------PCKKDDSCSFVGKTWTLY 77
Score = 66.9 bits (164), Expect = 2e-15
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWK 112
++H +HT + P+EC C KRF+ S L H++VH Y K C+ T++
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY--PCKKDDSCSFVGKTWT-- 75
Query: 113 QNLEVHMRTH 122
L+ H
Sbjct: 76 LYLKHVAECH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 69.9 bits (172), Expect = 5e-17
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 32/83 (38%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ + +P+ C CGK F++ LN H +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK----------------------------- 33
Query: 117 VHMRTHTGERPYECEICGKRFSQ 139
+ HT ERP++C++ S
Sbjct: 34 ---QVHTSERPHKCQVWVSGPSS 53
Score = 58.0 bits (141), Expect = 2e-12
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTT 175
+ + +PY C+ CGK FS+ N H + +VH +RP C ++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK-------QVHTSERPHKCQVWVSGPSS 53
Score = 39.9 bits (94), Expect = 2e-05
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 55 QIHM-RTHTGERPFECDVCGKRFAQ 78
H+ + HT ERP +C V +
Sbjct: 29 NGHIKQVHTSERPHKCQVWVSGPSS 53
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 69.3 bits (170), Expect = 2e-16
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 80 STLNTHKRVHISYLHVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYECEICGKRF 137
+ L + +PY C C+ FS L H+R HTG++P++C IC + F
Sbjct: 7 NNLLNYVVPK-------MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 138 SQKSACNTHKRTH 150
S+ TH RTH
Sbjct: 60 SRSDHLTTHIRTH 72
Score = 64.6 bits (158), Expect = 9e-15
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 57 HMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQN 114
RP+ C V C +RF++ L H R+H KP+ C C FS +
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFSRSDH 64
Query: 115 LEVHMRTHT 123
L H+RTHT
Sbjct: 65 LTTHIRTHT 73
Score = 44.6 bits (106), Expect = 5e-07
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 114 NLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG 171
NL ++ RPY C E C +RFS+ H R H +PF C C
Sbjct: 8 NLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHT--------GQKPFQCRICMR 57
Query: 172 MFTTKQNL 179
F+ +L
Sbjct: 58 NFSRSDHL 65
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-15
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ +GE+P+ C+ CGK F+QKS L+ H+R H +KP +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG-----EKPSGPSS 45
Score = 61.4 bits (150), Expect = 9e-14
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+PY C CGK FSQKS + H+RTH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 65.6 bits (161), Expect = 2e-15
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 33/75 (44%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNL 115
+ TGE+P+EC+ C K F KS NL
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKS---------------------------------NL 28
Query: 116 EVHMRTHTGERPYEC 130
VH RTHTGE
Sbjct: 29 MVHQRTHTGESGPSS 43
Score = 62.1 bits (152), Expect = 5e-14
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC C K F+ KS H+RTH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.8 bits (76), Expect = 0.004
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 55 QIHMRTHTGERPFEC 69
+H RTHTGE
Sbjct: 29 MVHQRTHTGESGPSS 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 66.5 bits (162), Expect = 4e-15
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 60 THTGERPFECDVCGKRFAQKSTLNTH-KRVHISYLHVKDKPY-----HCTECEATFSWKQ 113
+ C + F+ L TH H+ + + C +F K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG--GPEQNNHVCYWEECPREGKSFKAKY 76
Query: 114 NLEVHMRTHTGERPYEC 130
L H+R HTGE+
Sbjct: 77 KLVNHIRVHTGEKSGPS 93
Score = 48.8 bits (116), Expect = 2e-08
Identities = 17/83 (20%), Positives = 21/83 (25%), Gaps = 17/83 (20%)
Query: 93 LHVKDKPYHCTECEATFSWKQNLEVHM-RTHTGERPY--------ECEICGKRFSQKSAC 143
+ C+ TFS L H+ H G EC GK F K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 144 NTHKRTHIPYLPRVHPKDRPFHC 166
H R H +
Sbjct: 79 VNHIRVHTGE--------KSGPS 93
Score = 38.0 bits (88), Expect = 2e-04
Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 13/53 (24%)
Query: 59 RTHTGERPF--------ECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
H G EC GK F K L H RVH +K +
Sbjct: 47 MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH-----TGEKSGPSS 94
Score = 35.3 bits (81), Expect = 0.002
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 121 THTGERPYECEICGKRFSQKSACNTH-KRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
+ + C + FS TH H+ + + CP F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Score = 33.8 bits (77), Expect = 0.006
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 55 QIHMRTHTGERPFEC 69
H+R HTGE+
Sbjct: 79 VNHIRVHTGEKSGPS 93
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 64.9 bits (159), Expect = 5e-15
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ TG+RP+EC CGK F KS+L H+R H +KP +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG-----EKPSGPSS 45
Score = 59.9 bits (146), Expect = 3e-13
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG+RPYEC CGK F KS+ H+R+H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 31.7 bits (73), Expect = 0.013
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 55 QIHMRTHTGERPFEC 69
H R+HTGE+P
Sbjct: 29 ICHRRSHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-15
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+PF+CD+CGK F +S LN H VH + +KP +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA-----EKPSGPS 44
Score = 61.4 bits (150), Expect = 1e-13
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P++C+ICGK F +S N H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 29.8 bits (68), Expect = 0.051
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 55 QIHMRTHTGERPFECD 70
H HT E+P
Sbjct: 29 NRHSMVHTAEKPSGPS 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 64.4 bits (158), Expect = 6e-15
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 33/72 (45%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ GE+P+ C++CG RF TL +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKS-------------------------------- 29
Query: 117 VHMRTHTGERPY 128
H+R HTG P
Sbjct: 30 -HLRIHTGSGPS 40
Score = 62.9 bits (154), Expect = 2e-14
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE+PY CEICG RF +H R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 30.5 bits (70), Expect = 0.029
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 55 QIHMRTHTGERPF 67
+ H+R HTG P
Sbjct: 28 KSHLRIHTGSGPS 40
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-15
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ GE+ ++CDVCGK F+Q S L TH+RVH +KP +
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG-----EKPSGPS 44
Score = 60.2 bits (147), Expect = 2e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE+ Y+C++CGK FSQ S TH+R H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 30.2 bits (69), Expect = 0.044
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 55 QIHMRTHTGERPFEC 69
Q H R HTGE+P
Sbjct: 29 QTHQRVHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-15
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ TGE+P+ C+ CGK F QKS LN H+R+H +KP +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG-----EKPSGPSS 45
Score = 58.3 bits (142), Expect = 1e-12
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY C CGK F QKS N H+R H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 29.4 bits (67), Expect = 0.069
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 55 QIHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 29 NRHRRIHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-14
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ TGE+P+EC VC K F QK+ L H++ H +KP +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG-----EKPSGPSS 45
Score = 57.9 bits (141), Expect = 2e-12
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC++C K F+QK+ H++TH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-14
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK + K L+ H++VH ++P +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG-----ERPSGPS 44
Score = 59.1 bits (144), Expect = 8e-13
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+CE CGK ++ K + H++ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-14
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ TGE+P++CDVC K F S+L H+R+H +KP +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG-----EKPSGPSS 45
Score = 57.9 bits (141), Expect = 2e-12
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C++C K F S+ H+R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 29.4 bits (67), Expect = 0.068
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 56 IHMRTHTGERPFEC 69
+H R HTGE+P
Sbjct: 30 VHQRIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 63.3 bits (155), Expect = 2e-14
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TG++PFEC CGK F K L TH+R+H +K +
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG-----EKSGPSS 44
Score = 57.2 bits (139), Expect = 4e-12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG++P+EC CGK F K TH+R H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-14
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+ C+VCGK F + LN H RVH + +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ-----ETLSGPS 44
Score = 57.9 bits (141), Expect = 2e-12
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY C +CGK F + N H R H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-14
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+EC +CGK F +KS L+ H+++H +KP +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG-----EKPSGPS 44
Score = 59.9 bits (146), Expect = 4e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC ICGK F++KS + H++ H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-14
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+EC VCGK F+ + +L+ H+R+H KP +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG-----KKPSGPS 44
Score = 59.4 bits (145), Expect = 4e-13
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC +CGK FS + + + H+R H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 3e-14
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 33/75 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ GE+P+ C CGK F+ KS L
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKS---------------------------------YLI 29
Query: 117 VHMRTHTGERPYECE 131
+HMRTH+GE+P
Sbjct: 30 IHMRTHSGEKPSGPS 44
Score = 59.5 bits (145), Expect = 5e-13
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE+PY C CGK FS KS H RTH
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 32.1 bits (74), Expect = 0.008
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 56 IHMRTHTGERPFEC 69
IHMRTH+GE+P
Sbjct: 30 IHMRTHSGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 62.5 bits (153), Expect = 3e-14
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+PF+C CGK F+++S LN H ++H +KP +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG-----EKPSGPS 44
Score = 59.1 bits (144), Expect = 8e-13
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P++C CGK FS++SA N H + H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 30.6 bits (70), Expect = 0.035
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 55 QIHMRTHTGERPFEC 69
+H + HTGE+P
Sbjct: 29 NVHHKLHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 4e-14
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C CGK F +KS L+ H++ H ++ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG-----ERHSGPS 44
Score = 60.2 bits (147), Expect = 3e-13
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F++KS + H+++H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 30.9 bits (71), Expect = 0.020
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 56 IHMRTHTGERPFEC 69
IH ++HTGER
Sbjct: 30 IHQQSHTGERHSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 4e-14
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ +GE+P++C+ CGK F Q S L H R+H +KP +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG-----EKPSGPSS 45
Score = 57.5 bits (140), Expect = 3e-12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+PY+C CGK F+Q S H R H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 29.0 bits (66), Expect = 0.13
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 30 NHWRIHTGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 62.2 bits (152), Expect = 4e-14
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE+PY+CE CG RF Q + H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 61.8 bits (151), Expect = 7e-14
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 33/72 (45%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ GE+P++C+ CG RF Q + +L
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVA---------------------------------HLR 28
Query: 117 VHMRTHTGERPY 128
H+ HTG P
Sbjct: 29 AHVLIHTGSGPS 40
Score = 29.0 bits (66), Expect = 0.12
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 55 QIHMRTHTGERPF 67
+ H+ HTG P
Sbjct: 28 RAHVLIHTGSGPS 40
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 4e-14
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 33/75 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TGE+PFEC C K F KS NL
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKS---------------------------------NLI 29
Query: 117 VHMRTHTGERPYECE 131
VH RTHTGE+P
Sbjct: 30 VHQRTHTGEKPSGPS 44
Score = 58.6 bits (143), Expect = 1e-12
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P+EC C K F+ KS H+RTH
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 31.3 bits (72), Expect = 0.015
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 56 IHMRTHTGERPFEC 69
+H RTHTGE+P
Sbjct: 30 VHQRTHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 4e-14
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GE+PF+C+ CGKRF Q S L++H+RVH +KP +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG-----EKPSGPS 44
Score = 59.5 bits (145), Expect = 5e-13
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+P++CE CGKRF+Q S ++H+R H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 28.6 bits (65), Expect = 0.15
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 55 QIHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 29 HSHQRVHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 5e-14
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+ECDVC K F+ ++L H+RVH +KP +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG-----EKPSGPS 44
Score = 58.7 bits (143), Expect = 9e-13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC++C K FS ++ H+R H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.1 bits (152), Expect = 5e-14
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TG +P+ C+ CGK F KS L
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKS---------------------------------YLI 29
Query: 117 VHMRTHTGERPYEC 130
+H RTHTGE
Sbjct: 30 IHTRTHTGESGPSS 43
Score = 60.6 bits (148), Expect = 2e-13
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG +PY C CGK F KS H RTH
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 32.5 bits (75), Expect = 0.006
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 55 QIHMRTHTGERPFEC 69
IH RTHTGE
Sbjct: 29 IIHTRTHTGESGPSS 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 5e-14
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ +G++P+EC C K F Q LN HKRVH ++ +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG-----ERSSGPSS 45
Score = 57.5 bits (140), Expect = 3e-12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +G++PYEC+ C K F Q N HKR H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 6e-14
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE P+EC CGK F++K L +H+R H +KP +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG-----EKPSGPS 44
Score = 59.4 bits (145), Expect = 6e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE PYEC CGK FS+K +H+RTH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 30.2 bits (69), Expect = 0.037
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H RTH GE+P
Sbjct: 30 SHQRTHAGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 6e-14
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGER +EC CGK F QKSTL+ H+R+H +KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG-----EKPSGPS 44
Score = 58.3 bits (142), Expect = 1e-12
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGER YEC CGK F QKS + H+R H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 29.8 bits (68), Expect = 0.051
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
+H R H GE+P
Sbjct: 30 MHQRIHRGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 6e-14
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGER +EC CGK FA+KSTL H+R+H +KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG-----EKPSGPS 44
Score = 59.0 bits (144), Expect = 7e-13
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGER YEC CGK F++KS H+R H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 30.5 bits (70), Expect = 0.028
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 56 IHMRTHTGERPFEC 69
+H R HTGE+P
Sbjct: 30 MHQRIHTGEKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 7e-14
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TGE PF C CGK F K+ NL
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKT---------------------------------NLI 29
Query: 117 VHMRTHTGERPYEC 130
+H + HTGERP
Sbjct: 30 IHQKIHTGERPSGP 43
Score = 57.9 bits (141), Expect = 2e-12
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE P+ C CGK F+ K+ H++ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 30.9 bits (71), Expect = 0.025
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 56 IHMRTHTGERPFEC 69
IH + HTGERP
Sbjct: 30 IHQKIHTGERPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 7e-14
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ + E+P++C+ CGK + ++ L+ H+RV H+ +K +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-----HMGEKTSGPS 44
Score = 58.7 bits (143), Expect = 1e-12
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ + E+PY+CE CGK ++++ + H+R H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.8 bits (68), Expect = 0.061
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 56 IHMRTHTGERPFEC 69
+H R H GE+
Sbjct: 30 MHQRVHMGEKTSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 7e-14
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C CGK F KS L H++ H ++ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG-----ERHSGPS 44
Score = 61.4 bits (150), Expect = 9e-14
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 84 THKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
+ +KPY C++C +F+WK L +H + HTGER
Sbjct: 2 SSGSSGTG-----EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 58.7 bits (143), Expect = 1e-12
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F+ KS H++ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 30.2 bits (69), Expect = 0.042
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
IH + HTGER
Sbjct: 30 IHQKCHTGERHSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 8e-14
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ G++ F+C+ C K F Q S+L H+R+H +KP +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG-----EKPSGPS 44
Score = 57.5 bits (140), Expect = 3e-12
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ G++ ++C C K F+Q S+ H+R H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 29.8 bits (68), Expect = 0.054
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 56 IHMRTHTGERPFEC 69
+H R HTGE+P
Sbjct: 30 VHQRIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 8e-14
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TG + FEC CGK F +KSTL+ H+++H +KP +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG-----EKPSGPS 44
Score = 56.8 bits (138), Expect = 5e-12
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG + +EC CGK F++KS + H++ H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.8 bits (68), Expect = 0.059
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 56 IHMRTHTGERPFEC 69
+H + HTGE+P
Sbjct: 30 MHQKIHTGEKPSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 62.4 bits (151), Expect = 8e-14
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ H G+R +C CG F ++ST + K C +C + L
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRST------------LSRRKTPMCEKCRKDSCQEAALN 56
Query: 117 VHMRTHTGERPY 128
+G++
Sbjct: 57 KDEGNESGKKTS 68
Score = 55.8 bits (134), Expect = 3e-11
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 80 STLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQ 139
+ +++H+ D+ C++C F T + + CE C K Q
Sbjct: 4 GSSGKRQKIHLG-----DRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQ 51
Query: 140 KSACNTHKRTH 150
++A N +
Sbjct: 52 EAALNKDEGNE 62
Score = 40.0 bits (93), Expect = 2e-05
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
I T + + C+ C K Q++ LN +
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 61.4 bits (150), Expect = 8e-14
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ TGE+P+ C CGK F S L H+RVH +KP +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG-----EKPSGPSS 45
Score = 59.9 bits (146), Expect = 4e-13
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 84 THKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECE 131
+ +KPY+C EC +F W L H R H+GE+P
Sbjct: 2 SSGSSGTG-----EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 56.4 bits (137), Expect = 8e-12
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY C+ CGK F S H+R H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 29.5 bits (67), Expect = 0.077
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R H+GE+P
Sbjct: 30 KHQRVHSGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-14
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTE 104
+ TGE+P++C+ CGK F S L+ H+R+H +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG-----EKPSGPSS 45
Score = 55.6 bits (135), Expect = 2e-11
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F S + H+R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-14
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TGE+PF+C CG FSW +L
Sbjct: 3 SGSSGTGEKPFQCKECGM---------------------------------NFSWSCSLF 29
Query: 117 VHMRTHTGERPYEC 130
H+R+H P
Sbjct: 30 KHLRSHERTDPSGP 43
Score = 58.8 bits (143), Expect = 9e-13
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P++C+ CG FS + H R+H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.0 bits (71), Expect = 0.025
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 57 HMRTHTGERPFECD 70
H+R+H P
Sbjct: 31 HLRSHERTDPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-14
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TGE+P+EC CGK F +KS L
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKS---------------------------------QLH 29
Query: 117 VHMRTHTGERPYEC 130
VH R HTGE P
Sbjct: 30 VHQRIHTGENPSGP 43
Score = 59.5 bits (145), Expect = 6e-13
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC CGK F +KS + H+R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.6 bits (70), Expect = 0.032
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
+H R HTGE P
Sbjct: 30 VHQRIHTGENPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-14
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GE+PF+C+ CGKRF Q S L++H+RVH +KP +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG-----EKPSGPS 44
Score = 57.6 bits (140), Expect = 3e-12
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+P++CE CGKRF+Q S ++H+R H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 29.4 bits (67), Expect = 0.079
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 55 QIHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 29 HSHQRVHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-14
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+ C CGK FAQK+ L H+R+H +KP +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG-----EKPSGPS 44
Score = 57.1 bits (139), Expect = 4e-12
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY C CGK F+QK+ H+R H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 61.4 bits (150), Expect = 9e-14
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TG +P+ C C K F+ KS L
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKS---------------------------------QLI 29
Query: 117 VHMRTHTGERPYEC 130
VH R+HTG +P
Sbjct: 30 VHQRSHTGVKPSGP 43
Score = 58.7 bits (143), Expect = 1e-12
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG +PY C C K FS KS H+R+H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 31.0 bits (71), Expect = 0.021
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 56 IHMRTHTGERPFEC 69
+H R+HTG +P
Sbjct: 30 VHQRSHTGVKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 9e-14
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+PF+C CGK F+ LN H+R+H +KP +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG-----EKPSGPS 44
Score = 59.1 bits (144), Expect = 8e-13
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P++C CGK FS N H+R H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F + L TH VH +KP +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG-----EKPSGPS 44
Score = 58.7 bits (143), Expect = 9e-13
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+CE CGK F + TH H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 29.8 bits (68), Expect = 0.061
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 55 QIHMRTHTGERPFEC 69
H HTGE+P
Sbjct: 29 YTHHMVHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+ + C CGK F++ L H+R+H +KP +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG-----EKPSGPS 44
Score = 59.1 bits (144), Expect = 8e-13
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+ Y C+ CGK FS+ H+R H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 29.4 bits (67), Expect = 0.070
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R H+GE+P
Sbjct: 30 KHERLHSGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 1e-13
Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TGERP+ C VCGK F +S NL
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRS---------------------------------NLI 29
Query: 117 VHMRTHTGERPYEC 130
H + HTGE+P
Sbjct: 30 KHQKIHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 1e-12
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGERPY C +CGK F+ +S H++ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 61.0 bits (149), Expect = 1e-13
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+PFEC CGK F+ S L TH+R+H +KP +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG-----EKPSGPS 44
Score = 57.9 bits (141), Expect = 2e-12
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P+EC CGK FS S TH+R H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 29.8 bits (68), Expect = 0.064
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 30 THQRIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+ C+ CGK F S L H+R+H +KP +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG-----EKPSGPS 44
Score = 57.5 bits (140), Expect = 2e-12
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY CE CGK F S H+R H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 61.0 bits (149), Expect = 1e-13
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 32/74 (43%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TG++P+EC CGK F Q ++L H R
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWR----------------------------- 33
Query: 117 VHMRTHTGERPYEC 130
HTGE+P
Sbjct: 34 ---YYHTGEKPSGP 44
Score = 56.4 bits (137), Expect = 9e-12
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPA 168
+ TG++PYEC CGK F Q ++ H R H ++P +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWR-------YYHTGEKPSGPSS 46
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F +S+L H+ H +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG-----EKPSGPS 44
Score = 57.5 bits (140), Expect = 3e-12
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F +S+ H+ TH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 31.4 bits (72), Expect = 0.017
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 55 QIHMRTHTGERPFEC 69
IH TH+GE+P
Sbjct: 29 AIHQATHSGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+PF+C CGK + Q+ L H+RVH +KP +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG-----EKPSGPS 44
Score = 55.6 bits (135), Expect = 2e-11
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P++C CGK ++Q+ H+R H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GE+P++C CGK + ++ L+ H+RVH +K +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG-----EKLSGPS 44
Score = 57.9 bits (141), Expect = 2e-12
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+PY+C CGK + ++ + H+R H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 30.2 bits (69), Expect = 0.044
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 55 QIHMRTHTGERPFECD 70
H R HTGE+
Sbjct: 29 DFHQRVHTGEKLSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F S L TH+ +H +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG-----EKPSGPS 44
Score = 56.4 bits (137), Expect = 7e-12
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F S TH+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GERP+ C+ CGK F + S L H + H ++K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-----REKSSGPS 44
Score = 55.2 bits (134), Expect = 2e-11
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GERPY C CGK F + S H + H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 56 IHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TG +P++C+ CGK F+Q S L H+RVH +KP +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG-----EKPSGPS 44
Score = 56.4 bits (137), Expect = 8e-12
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG +PY+C CGK FSQ S H+R H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.7 bits (148), Expect = 2e-13
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
+KP CTEC F WK L +H RTH ++
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 58.0 bits (141), Expect = 2e-12
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P +C CGK F KS H+RTH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 31.0 bits (71), Expect = 0.020
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 56 IHMRTHTGERPFEC 69
+H RTH ++
Sbjct: 30 MHQRTHVDDKHSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+EC+ CGK F+ +S+L TH+ +H KP +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG-----KKPSGPS 44
Score = 57.5 bits (140), Expect = 3e-12
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC CGK FS +S+ TH+ H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 29.8 bits (68), Expect = 0.062
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 56 IHMRTHTGERPFEC 69
H HTG++P
Sbjct: 30 THQAIHTGKKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-13
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC 102
+ TG +P+ C+ CGK F+ S+L TH+ +H +KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG-----EKPSGP 43
Score = 58.7 bits (143), Expect = 1e-12
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG +PY C CGK FS S+ TH+ H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.6 bits (65), Expect = 0.14
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 56 IHMRTHTGERPFEC 69
H HTGE+P
Sbjct: 30 THQVIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-13
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGERP +C+ CGK F Q + L H+R+H +KP +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG-----EKPSGPS 44
Score = 56.4 bits (137), Expect = 7e-12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGERP++C CGK F Q + H+R H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 29.8 bits (68), Expect = 0.064
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 30 QHQRIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-13
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F+Q S L H+R+H +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG-----EKPSGPS 44
Score = 57.1 bits (139), Expect = 4e-12
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK FSQ S H+R H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 29.4 bits (67), Expect = 0.080
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 30 RHQRIHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+ C CGK F +S L H+++ H K KP +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-----HTKQKPSGPS 44
Score = 56.8 bits (138), Expect = 6e-12
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY C CGK F+ +S H++ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 60.2 bits (147), Expect = 3e-13
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ +GE+P+EC+ CGK F WK L
Sbjct: 3 SGSSGSGEKPYECNECGK---------------------------------AFIWKSLLI 29
Query: 117 VHMRTHTGERPYEC 130
VH RTH G
Sbjct: 30 VHERTHAGVSGPSS 43
Score = 59.5 bits (145), Expect = 4e-13
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+PYEC CGK F KS H+RTH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 30.2 bits (69), Expect = 0.035
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 55 QIHMRTHTGERPFEC 69
+H RTH G
Sbjct: 29 IVHERTHAGVSGPSS 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 60.3 bits (147), Expect = 3e-13
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ GE+P+ CD CGK F+QK +L H RVH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 59.9 bits (146), Expect = 3e-13
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE+PY C+ CGK FSQK + H R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 27.1 bits (61), Expect = 0.51
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 55 QIHMRTHTGERPF 67
+H+R HTG P
Sbjct: 28 IVHIRVHTGSGPS 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 60.3 bits (147), Expect = 3e-13
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ GE+ ++C C F+Q S+L H+ V HV +KP +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-----HVGEKPSGPS 44
Score = 57.6 bits (140), Expect = 3e-12
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE+ ++C C FSQ S+ H+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 30.2 bits (69), Expect = 0.044
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 55 QIHMRTHTGERPFEC 69
++H H GE+P
Sbjct: 29 RLHQNVHVGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-13
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GE+P+ CD CGK F + L H+R+H +KP +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG-----EKPSGPS 44
Score = 56.8 bits (138), Expect = 6e-12
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+PY C+ CGK F + H+R H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 60.2 bits (147), Expect = 3e-13
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
+KP+ C+ CE FS K L VH +TH E+P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 53.7 bits (130), Expect = 9e-11
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+P+ C C K FS KS H++TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 32.9 bits (76), Expect = 0.005
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
+H +TH E+P
Sbjct: 28 VHQQTHAEEKPSGP 41
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 3e-13
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ GER C CGK F Q S H+R+H +KP +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-----GEKPSGPS 44
Score = 57.9 bits (141), Expect = 2e-12
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GER + C CGK F Q S H+R H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.1 bits (61), Expect = 0.51
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 30 QHRRIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 3e-13
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ GE+P++C CGK F+ L H H +KP +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR-----EKPSGPS 44
Score = 57.9 bits (141), Expect = 2e-12
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE+PY+C CGK FS H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 3e-13
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GERPF+C+ CGK F ++S L H R+H ++K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-----REKSSGPS 44
Score = 56.8 bits (138), Expect = 5e-12
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GERP++C CGK F ++S H R H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 29.8 bits (68), Expect = 0.066
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 55 QIHMRTHTGERPFEC 69
H+R H+ E+
Sbjct: 29 AGHLRLHSREKSSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-13
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GE+P++C CGK F + + LN H+R+H +P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG-----YRPSGPS 44
Score = 56.4 bits (137), Expect = 7e-12
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+PY+C CGK F + + N H+R H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-13
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHC 102
+ TGE+P+ C CGK F +S L TH+++ H +KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-----HTGEKPSGP 43
Score = 57.1 bits (139), Expect = 4e-12
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY C CGK F+ +S TH++ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.0 bits (66), Expect = 0.12
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H + HTGE+P
Sbjct: 30 THQKIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 59.8 bits (146), Expect = 4e-13
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+ ++C+ CGK F++ S L+ H+++H +KP +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG-----EKPSGPS 44
Score = 56.4 bits (137), Expect = 8e-12
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+ Y+C CGK FS+ S + H++ H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-13
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F Q S L H+R+H KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG-----VKPSGPS 44
Score = 55.6 bits (135), Expect = 1e-11
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F+Q S H+R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 29.0 bits (66), Expect = 0.13
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 56 IHMRTHTGERPFEC 69
H R HTG +P
Sbjct: 30 NHQRIHTGVKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 4e-13
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 34/78 (43%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ +GE+PF+C+ CGK F S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNS---------------------------------QCY 29
Query: 117 VHMRTHTGERPYECEICG 134
H R+H+GE+P G
Sbjct: 30 SHQRSHSGEKPSGPS-SG 46
Score = 57.9 bits (141), Expect = 2e-12
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+P++CE CGK F S C +H+R+H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 29.8 bits (68), Expect = 0.059
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 56 IHMRTHTGERPFECDVCG 73
H R+H+GE+P G
Sbjct: 30 SHQRSHSGEKPSGPS-SG 46
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-13
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F Q S L H+ +H +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG-----EKPSGPS 44
Score = 56.0 bits (136), Expect = 1e-11
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F+Q S H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 5e-13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F Q S L H+RVH KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG-----GKPSGPS 44
Score = 55.6 bits (135), Expect = 1e-11
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F+Q S H+R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 29.0 bits (66), Expect = 0.10
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 55 QIHMRTHTGERPFEC 69
H R HTG +P
Sbjct: 29 ARHRRVHTGGKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 5e-13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ +GE+PF+C CGK F Q L +H R+H +KP +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG-----EKPSGPS 44
Score = 56.4 bits (137), Expect = 9e-12
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+P++C+ CGK F Q +H R H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.4 bits (145), Expect = 5e-13
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P+EC CGK F+Q + L H+RVH +KP +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG-----EKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-11
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PYEC+ CGK FSQ + H+R H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 29.4 bits (67), Expect = 0.094
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
H R HTGE+P
Sbjct: 30 QHQRVHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 5e-13
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P EC CGK F+ S L H+R+H + P +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG-----ENPSGPS 44
Score = 57.5 bits (140), Expect = 3e-12
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+P+EC CGK FS S H+R H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 30.2 bits (69), Expect = 0.048
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
+H R HTGE P
Sbjct: 30 VHQRIHTGENPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 6e-13
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TG++P++C+ CGK F Q S L H+ +H +KP +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG-----EKPSGPS 44
Score = 57.1 bits (139), Expect = 5e-12
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TG++PY+C CGK F+Q S H+ H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 7e-13
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
PY C++CE +FS K L VH R HT E+P
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 58.7 bits (143), Expect = 1e-12
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ G P++C C K F+ K L H+R+H ++KP +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-----REKPSGPS 44
Score = 56.4 bits (137), Expect = 9e-12
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ G PY+C C K FS K H+R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 30.6 bits (70), Expect = 0.035
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 56 IHMRTHTGERPFEC 69
+H R HT E+P
Sbjct: 30 VHQRMHTREKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 7e-13
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C VCGK F S L H VH ++P +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG-----ERPSGPS 44
Score = 54.4 bits (132), Expect = 5e-11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C++CGK F S H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 59.7 bits (145), Expect = 7e-13
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 94 HVKDKPYHCT--ECEATFSWKQNLEVHMRTHTGERPYEC--EICGKRFSQKSACNTHKRT 149
+ + + C+ C T+ +L+ H RTHTGE+P+ C + C +RF++ + H+RT
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 150 H 150
H
Sbjct: 72 H 72
Score = 51.2 bits (123), Expect = 1e-09
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 55 QIHMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVH 89
+ H RTHTGE+PF C C +RFA+ L+ H+R H
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 41.2 bits (97), Expect = 7e-06
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 115 LEVHMRTHTGERPYECEI--CGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC--PACE 170
+ R + C CGK + + S H RTH ++PF C CE
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT--------GEKPFSCSWKGCE 56
Query: 171 GMFTTKQNL 179
F L
Sbjct: 57 RRFARSDEL 65
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 8e-13
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C CGK F + S L H+ +H +KP +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG-----EKPSGPS 44
Score = 55.2 bits (134), Expect = 2e-11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F + S H+ H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 59.3 bits (143), Expect = 8e-13
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
Y C EC L+ H+RTHT RPY C C F K H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 57.8 bits (139), Expect = 3e-12
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+ C+ CG R + S L H R H +PYHCT C +F K NL HM++ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTD-----VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 47.0 bits (111), Expect = 3e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ H+RTHT RP+ C C F K L H +
Sbjct: 18 KKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 41.2 bits (96), Expect = 6e-06
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 128 YECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNLE 180
Y CE CG R + S H RTH RP+HC C F TK NL
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHT--------DVRPYHCTYCNFSFKTKGNLT 46
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 9e-13
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C CGK F S+ H+R+H +P +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG-----QRPSGPS 44
Score = 56.8 bits (138), Expect = 5e-12
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F S+C H+R H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 1e-12
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+P++C+ CGK F Q S L H+ +H +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG-----EKPSGPS 44
Score = 56.7 bits (138), Expect = 7e-12
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE+PY+C CGK F+Q S H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 1e-12
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 33/74 (44%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
+ TGE P+EC CGK F++K L
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKD---------------------------------QLV 29
Query: 117 VHMRTHTGERPYEC 130
H +TH+G+
Sbjct: 30 SHQKTHSGQSGPSS 43
Score = 57.5 bits (140), Expect = 3e-12
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ TGE PYEC CGK FS+K +H++TH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 30.2 bits (69), Expect = 0.043
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 56 IHMRTHTGERPFEC 69
H +TH+G+
Sbjct: 30 SHQKTHSGQSGPSS 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 1e-12
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ + + +C CG+ F KS LN H+R+H +KP +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-----GEKPSGPS 44
Score = 55.6 bits (135), Expect = 2e-11
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ + + ++C CG+ F+ KS N H+R H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 57.1 bits (139), Expect = 3e-12
Identities = 17/72 (23%), Positives = 20/72 (27%), Gaps = 33/72 (45%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVH 118
+GE P+EC CGK F +K L H
Sbjct: 3 SGSSGENPYECSECGKAFNRKD---------------------------------QLISH 29
Query: 119 MRTHTGERPYEC 130
RTH GE
Sbjct: 30 QRTHAGESGPSS 41
Score = 54.8 bits (133), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+GE PYEC CGK F++K +H+RTH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 30.6 bits (70), Expect = 0.025
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 56 IHMRTHTGERPFEC 69
H RTH GE
Sbjct: 28 SHQRTHAGESGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 57.2 bits (139), Expect = 3e-12
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ +GE+ CD CGK F S L H+RVH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 56.1 bits (136), Expect = 1e-11
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ +GE+ + C+ CGK F SA H+R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 26.4 bits (59), Expect = 0.85
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 56 IHMRTHTGERPFECD 70
IH R H GE+
Sbjct: 30 IHQRVHMGEKCSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 55.8 bits (135), Expect = 1e-11
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 57 HMRTHTGERPFECDV--CGKRFAQKSTLNTHKRVHISYLHVKDKPYHCT 103
+ TGE+PF C CG RF++ L+ H+R H KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-----HSGVKPSGPS 46
Score = 50.8 bits (122), Expect = 1e-09
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 118 HMRTHTGERPYEC--EICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC 166
+ TGE+P+ C CG RFS+ + H+R+H +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS--------GVKPSGP 45
Score = 33.0 bits (76), Expect = 0.004
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 55 QIHMRTHTGERPFECD 70
H R+H+G +P
Sbjct: 31 SRHRRSHSGVKPSGPS 46
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 54.2 bits (131), Expect = 5e-11
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ GE P+ C CGK F Q+ +L H+R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 54.2 bits (131), Expect = 5e-11
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE PY C CGK F+Q+ + H+R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 53.4 bits (129), Expect = 1e-10
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPY 128
+ PY C +C +F+ + +L VH R+ + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 28.4 bits (64), Expect = 0.20
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 56 IHMRTHTGERPF 67
+H R+ + P
Sbjct: 29 VHQRSCSQSGPS 40
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 54.1 bits (131), Expect = 5e-11
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPY 100
+G+R +EC CGK F QK +L H+R+H P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTG-----SGPS 39
Score = 52.6 bits (127), Expect = 2e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+G+R YEC+ CGK F QK + H+R H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 24.8 bits (55), Expect = 3.4
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 56 IHMRTHTGERPF 67
+H R HTG P
Sbjct: 28 LHERIHTGSGPS 39
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.0 bits (128), Expect = 2e-10
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ T + Y C CGK F++ H++ H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 52.6 bits (127), Expect = 2e-10
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ T + + C+ CGK F + L H+++H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 50.8 bits (122), Expect = 8e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHI 151
R TG +P++C C + FS+ H++ H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 50.8 bits (122), Expect = 9e-10
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHI 90
R TG +PF+C C + F++ L H++ H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 36.2 bits (84), Expect = 2e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTH 122
KP+ C +C+ +FS +L +H + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.8 bits (122), Expect = 1e-09
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY C C + FS + H++ H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 50.8 bits (122), Expect = 1e-09
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+GE+P+ C C + F+ + L H+++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 48.9 bits (117), Expect = 6e-09
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYEC 130
+KPY C EC+ TFS L H + HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 47.9 bits (114), Expect = 1e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ GE PF+C C + F Q++ L H+R H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 46.0 bits (109), Expect = 7e-08
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ GE P++C C + F+Q++ H+RTH
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 41.4 bits (97), Expect = 4e-06
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGERP 127
+ P+ C++C+ F+ + L H RTH +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.9 bits (111), Expect = 3e-08
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEIC 133
K C C F +L H +H+GE+PY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 41.8 bits (98), Expect = 2e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTEC 105
+ + C++CGK F LN HK H +KPY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS-----HSGEKPYSSGPS 46
Score = 39.9 bits (93), Expect = 1e-05
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG 171
+ + CEICGK F N HK + H ++P+ G
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS--------HSGEKPYSSGPSSG 48
Score = 29.1 bits (65), Expect = 0.13
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 57 HMRTHTGERPFECDVC 72
H +H+GE+P+
Sbjct: 31 HKLSHSGEKPYSSGPS 46
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 48.0 bits (113), Expect = 8e-08
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 3/94 (3%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
H T +R V + + + + C C FS +L+
Sbjct: 33 HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI-SQFVCPLCLMPFSSSVSLK 91
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
H+R E C +C K F+ + H
Sbjct: 92 QHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 36.8 bits (84), Expect = 0.001
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 19/123 (15%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLE 116
++ H G + H+ ++ + +
Sbjct: 13 YLSNHKG--------IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHN-PQLLDESSYL 63
Query: 117 VHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTK 176
+ + C +C FS + H R + CP C+ FT+
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT----------EHTKVCPVCKKEFTST 113
Query: 177 QNL 179
+
Sbjct: 114 DSA 116
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.1 bits (103), Expect = 1e-06
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 11/84 (13%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPR 156
+ Y C C A S H R C C RF H+
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKC------ 65
Query: 157 VHPKDRPFHCPACEGMFTTKQNLE 180
+ + C C F + ++
Sbjct: 66 ---EYKKLTCLECMRTFKSSFSIW 86
Score = 41.8 bits (97), Expect = 1e-05
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 54 PQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQ 113
+ ++C +C + + +H+R+ + C C F +
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA-------AVCPYCSLRFFSPE 56
Query: 114 NLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRT 149
+ H + + C C + F + H+
Sbjct: 57 LKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.8 bits (105), Expect = 6e-06
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
A S T + Y+C +C + H +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 39.8 bits (92), Expect = 2e-04
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
T + ++C VC L+ H H
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.6 bits (81), Expect = 0.006
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 5/57 (8%)
Query: 66 PFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
+ ++ Y C C A +L+ H+ +H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTA-----SSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.0 bits (87), Expect = 7e-05
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKP 99
+GE+P+ C VCG RF +K ++ H R H +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
Score = 36.4 bits (83), Expect = 3e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
+GE+PY C +CG RF +K + H R+H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 30.3 bits (67), Expect = 0.044
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTG 124
+KPY C C F K + H+R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 23.7 bits (50), Expect = 8.4
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 158 HPKDRPFHCPACEGMFTTKQNL 179
++P+ CP C F K +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRM 26
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 37.5 bits (86), Expect = 7e-05
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KPY C +C + K NL VH+R HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.3 bits (62), Expect = 0.19
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ +P++C C A K+ LN H R H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
Score = 24.4 bits (52), Expect = 3.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTH 150
+ +PY+C C + K+ N H R H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.9 bits (82), Expect = 3e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTHIPYL 154
+G+RP+ C IC F+ K+ C H + H L
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 32.8 bits (74), Expect = 0.004
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVHISYL 93
+G+RPF C +C F K+ H +VH L
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 30.1 bits (67), Expect = 0.035
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHT 123
+P+ C C + F+ K N H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.9 bits (56), Expect = 1.3
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 158 HPKDRPFHCPACEGMFTTKQNLE 180
RPF C C FTTK N
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCA 24
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 34.1 bits (79), Expect = 0.001
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 98 KPYHCT--ECEATFSWKQNLEVHMRTHTGER 126
+P+ CT C F+ L+ H RTHTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.8 bits (73), Expect = 0.010
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
RPF C CGKRF + L HKR H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 28.7 bits (65), Expect = 0.091
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
RP+ C CGKRF++ HKRTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 24.5 bits (54), Expect = 3.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 55 QIHMRTHTGER 65
Q H RTHTGE+
Sbjct: 21 QRHKRTHTGEK 31
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 34.0 bits (77), Expect = 0.001
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
RP+ C VCGKRF+ K + TH RVH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 33.2 bits (75), Expect = 0.003
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
RPY C +CGKRFS K TH R H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 31.3 bits (70), Expect = 0.014
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTG 124
+PY C+ C FS K +E H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.9 bits (78), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 96 KDKPYHCT--ECEATFSWKQNLEVHMRTHTGER 126
K K + C C + +L H+R HTGER
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.5 bits (64), Expect = 0.14
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 62 TGERPFECDV--CGKRFAQKSTLNTHKRVH 89
++ C + CGK + + S L H R H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 28.5 bits (64), Expect = 0.17
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 123 TGERPYECEI--CGKRFSQKSACNTHKRTH 150
++ + C I CGK + + S H R H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 24.2 bits (53), Expect = 5.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 55 QIHMRTHTGER 65
+ H+R HTGER
Sbjct: 27 RAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.4 bits (77), Expect = 0.002
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
+ + C C F+ +++L+ H R+HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.7 bits (70), Expect = 0.020
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
R F C+VC + FA++ L H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 29.2 bits (66), Expect = 0.067
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
R + CE+C + F+++ H R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.6 bits (76), Expect = 0.002
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHT 123
K+K + C +CE TFS + L H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 33.6 bits (76), Expect = 0.003
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 60 THTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+ E+ F+C+ C K F+ L H+R+H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 29.0 bits (64), Expect = 0.11
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 121 THTGERPYECEICGKRFSQKSACNTHKRTH 150
+ E+ ++C C K FS H+R H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.1 bits (80), Expect = 0.002
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTH-KRVHISYLHVKDKPYHCTECEATFSWKQNL 115
+ + E +EC C + + H H + V + Y C EC L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV--VLNSSYVCVECNFLTKRYDAL 66
Query: 116 EVH-MRTHTGERPYECEI 132
H ++ H GE ++ +
Sbjct: 67 SEHNLKYHPGEENFKLTM 84
Score = 25.9 bits (56), Expect = 4.3
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 4/63 (6%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRT-HTGER---PYECEICGKRFSQKSACNTHKRT 149
+ Y C C H+ + H Y C C + A + H
Sbjct: 13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK 72
Query: 150 HIP 152
+ P
Sbjct: 73 YHP 75
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.008
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
+ CD+CGK+F K TL +HK +H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32
Score = 28.2 bits (62), Expect = 0.17
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
+ + C++CGK+F K +HK H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 32.1 bits (73), Expect = 0.009
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 97 DKPYHCT--ECEATFSWKQNLEVHMRTHTGER 126
DK + C C TF + N+ H++TH +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.5 bits (61), Expect = 0.41
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 125 ERPYECEI--CGKRFSQKSACNTHKRTH 150
++ +EC C K F ++ +H +TH
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 27.1 bits (60), Expect = 0.52
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 53 VPQIHMRTHTGERP---FECDV--CGKRFAQKSTLNTHKRVHIS 91
+P+ + + E P FEC C K F ++ + +H + H+
Sbjct: 2 LPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 31.3 bits (70), Expect = 0.016
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KPY C C+ F+ L+ H+R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.2 bits (62), Expect = 0.17
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P+ C C ++FA L H R+H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 27.0 bits (59), Expect = 0.40
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY C C ++F+ A H R H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.0 bits (77), Expect = 0.018
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 48 FGPLLVPQIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHIS 91
+ IH GE+ + + + L + +
Sbjct: 190 LHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
Score = 29.8 bits (66), Expect = 0.42
Identities = 4/55 (7%), Positives = 13/55 (23%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIP 152
+ ++ + +H GE+ + E + +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
Score = 26.7 bits (58), Expect = 4.2
Identities = 5/54 (9%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 73 GKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
+ + ++ + + +H + L +K + E ++L + +
Sbjct: 183 SEDYMKRLHSMSQETIHRN-LARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 30.4 bits (68), Expect = 0.025
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P+ C+ CGKRF Q S L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 29.7 bits (66), Expect = 0.056
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY CE CGKRF Q S H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.069
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHKRVHI 90
+ E+ +C CG+ F Q +L H+ +H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
Score = 29.0 bits (64), Expect = 0.14
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 96 KDKPYHCTECEATFSWKQNLEVHMRTHTGER 126
++K + C EC F +L H H G++
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 28.6 bits (63), Expect = 0.19
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHI 151
+ E+ ++C CG+ F Q + H+ H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.5 bits (65), Expect = 0.073
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KP+ C+ CE K NL+ HM H+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.100
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
K + C C F +K +L+ H+R HT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.8 bits (53), Expect = 3.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
F C+ C K F K +L H R+H
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIH 32
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.0 bits (64), Expect = 0.12
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKR 87
++P+ CD+CGKR+ + L+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
Score = 28.2 bits (62), Expect = 0.28
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 125 ERPYECEICGKRFSQKSACNTHKR 148
++PY C+ICGKR+ + + H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (66), Expect = 0.14
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 96 KDKPYHCTECEA-TFSWKQNLEVHMRT-HTGERPYECEICGKRFSQKSACNTHKRTHIPY 153
+ C C T L+ HM + +C+ C K+F K+ N H
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 154 LP 155
P
Sbjct: 81 KP 82
Score = 27.6 bits (60), Expect = 0.88
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 57 HMRT-HTGERPFECDVCGKRFAQKSTLNTHKRV 88
HM + +C C K+F K+ LN H
Sbjct: 44 HMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.16
Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 72/167 (43%)
Query: 22 PLVFIPACVFRFSVENEKRFFFFSFLFG---PLLVPQIHMRTHTGERPFECDVCG--KRF 76
P +P + S+EN + G P+L + +
Sbjct: 315 PNTSLPPSILEDSLENNE---------GVPSPMLS-----------------ISNLTQEQ 348
Query: 77 AQK--STLNTH----KRVHISYLH-------VKDKP---YHCTECEATFSWKQNLEVHMR 120
Q + N+H K+V IS L V P Y L + +R
Sbjct: 349 VQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYG-------------LNLTLR 394
Query: 121 THTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCP 167
+ P + FS++ + +LP V PFH
Sbjct: 395 KA--KAPSGLDQSRIPFSER-----KLKFSNRFLP-V---ASPFHSH 430
Score = 26.6 bits (58), Expect = 6.1
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 42/155 (27%)
Query: 7 ITSPSVT---FDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLLVPQIHMRTH-- 61
++ P + ++ ++K P+ + + + +R FS F P+ P H +H
Sbjct: 379 VSGPPQSLYGLNLTLRK---AKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FH--SHLL 432
Query: 62 -TGERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKP-YHCTECEATFSWKQNLEVHM 119
D+ + + + + P Y TF +
Sbjct: 433 VPASDLINKDLVKNNVS----------FNAKDIQI---PVYD------TFDGS-----DL 468
Query: 120 RTHTG---ERPYECEICGKRFSQKSACNTHKRTHI 151
R +G ER +C I ++ K THI
Sbjct: 469 RVLSGSISERIVDC-IIRLPVKWETTTQF-KATHI 501
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.0 bits (62), Expect = 0.22
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVH 89
+RP+ CD C K F + L HK+ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 26.5 bits (58), Expect = 0.67
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 125 ERPYECEI--CGKRFSQKSACNTHKRTH 150
+RPY C+ C K F + HK++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.8 bits (61), Expect = 0.22
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
++C +C + F +KS L+ H+RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 26.7 bits (58), Expect = 0.52
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
Y+C +C + F +KSA + H+R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 0.27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 63 GERPFECDVCGKRFAQKSTLNTHKRVH 89
+ EC CGK F S L H+ +H
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALH 35
Score = 24.5 bits (52), Expect = 5.0
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHTGE 125
C EC F L H H GE
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 30.2 bits (68), Expect = 0.31
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPK 160
C C + + + E P C C K+ + + + + +
Sbjct: 163 TCVTCHWNLPGE---RIFNKIRNLELPL-CPYCYKKRREYFPEGYNNKVGVA-ASQGSMS 217
Query: 161 DRPFHCPACEGM 172
+RP + G+
Sbjct: 218 ERPPYILNSYGV 229
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.4 bits (60), Expect = 0.35
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P +C +CGK F Q S+L H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 27.0 bits (59), Expect = 0.40
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+P +C +CGK F+Q S+ H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 26.7 bits (58), Expect = 0.64
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KP C C F+ +L H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.38
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGE 125
K Y C++C+ATF+ +++L H +TH +
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHAAK 38
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 0.46
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 95 VKDKPYHCTECEA-TFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPY 153
V C C+A + L+ HM + + C CGK+ + H +
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS 88
Query: 154 LP 155
LP
Sbjct: 89 LP 90
Score = 26.0 bits (56), Expect = 3.1
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKR 87
HM + F C CGK+ + + H
Sbjct: 54 HMENC-KQEMFTCHHCGKQLRSLAGMKYHVM 83
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 26.6 bits (58), Expect = 0.66
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVH 89
++PF C CG+RF + L HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.4 bits (58), Expect = 0.81
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKR 87
+ + C +C + F ++ L H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQ 23
Score = 24.4 bits (53), Expect = 3.9
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 126 RPYECEICGKRFSQKSACNTHKRT 149
+ Y C +C + F+++ H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 28.6 bits (64), Expect = 1.0
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 11/60 (18%)
Query: 115 LEVH--MRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGM 172
E+H M C C ++ + + + R+ + AC G
Sbjct: 130 AELHGNMFVEE------CAKCKTQYVRDTV---VGTMGLKATGRLCTVAKARGLRACRGE 180
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 28.7 bits (64), Expect = 1.1
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 6 WITSPSVTFDINIQKNPLVFIPACVFRFSVENEKRFFFFSFLFGPLL-VPQIHMRTHTGE 64
+ P T D + P ++P RF + E + + GP P + +
Sbjct: 373 FGYQPFATKDPKVFDRPEEYVP---DRFVGDGEALLKYVWWSNGPETESPTVENKQ---- 425
Query: 65 RPFECDVC-GKRFA 77
C GK F
Sbjct: 426 -------CAGKDFV 432
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 28.5 bits (64), Expect = 1.1
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 11/60 (18%)
Query: 115 LEVH--MRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGM 172
E+H M C C ++ + + + R+ + AC G
Sbjct: 130 AELHGNMFVEE------CAKCKTQYVRDTV---VGTMGLKATGRLCTVAKARGLRACRGE 180
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGERPYECEICG 134
C C + + + P EC CG
Sbjct: 156 VCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CG 188
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.9 bits (56), Expect = 1.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+P+ C +C +R SA H RTH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
Score = 24.3 bits (52), Expect = 3.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
E+PF C +C +R S + H R H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.9 bits (57), Expect = 1.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
+ Y C+ C+ F Q L HM H +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.5 bits (56), Expect = 2.0
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
R Y C C + F A H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 25.1 bits (55), Expect = 2.6
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
R + C C + F L H VH
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.6 bits (56), Expect = 1.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
F C C KRF + L+ H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
Score = 24.5 bits (53), Expect = 4.1
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
+ C C KRF + + H H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.2 bits (55), Expect = 1.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHIS 91
F C C KRF + L H +H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHEN 27
Score = 23.7 bits (51), Expect = 7.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
+ C C KRF + H H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLH 25
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.0 bits (59), Expect = 2.0
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 67 FECDVCGKRFAQKSTLNTHKR--VHISYL-HVKDKPYHCTECEA 107
C C + F + L TH R H L + +PY E E
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAER 94
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 27.2 bits (59), Expect = 2.1
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTG 124
+C VC +S H + V+ ++ + K +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPK 160
+R C +C FS +H Y+ + H K
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESH------YIGKTHIK 120
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 27.1 bits (59), Expect = 3.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 128 YECEICGKRFSQKSACNTHKRT 149
Y C +C RFS SA + H R+
Sbjct: 117 YVCNVCNARFSTMSALSEHLRS 138
Score = 26.7 bits (58), Expect = 5.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 95 VKDKPYHCTECEATFSWKQNLEVHMRT 121
V Y C C A FS L H+R+
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRS 138
Score = 26.7 bits (58), Expect = 6.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 67 FECDVCGKRFAQKSTLNTHKR 87
+ C+VC RF+ S L+ H R
Sbjct: 117 YVCNVCNARFSTMSALSEHLR 137
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction,
transcription; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1y0j_B 2l6z_B
Length = 36
Score = 24.7 bits (53), Expect = 4.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 66 PFECDVCGKRFAQKSTLNTHKRVHISY 92
F C CG F+ STL H+ + S+
Sbjct: 8 RFMCLPCGIAFSSPSTLEAHQAYYCSH 34
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 25.3 bits (55), Expect = 4.3
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 51 LLVPQIHMRTHT---GERPFECDVCGKRFAQKSTLNTHKRVH 89
L + + ++ H G R C CG+ K L TH V
Sbjct: 25 LELSILKLKEHEDYCGARTELCGNCGRNVLVK-DLKTHPEVC 65
Score = 25.3 bits (55), Expect = 4.7
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
+ C C+ S + L+ H + G R C CG+ K TH
Sbjct: 16 RLAVCQHCDLELSILK-LKEHE-DYCGARTELCGNCGRNVLVKDL-KTHPEVC 65
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.1 bits (51), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIP 152
R Y C +C K FS+ +H +T+ P
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHP 34
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 26.2 bits (58), Expect = 6.6
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 88 VHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICG 134
H S+ H HC C + + + C++CG
Sbjct: 130 AHGSFAHC-----HCIGCGKVYPPQVFKSKLAEHPIKDFVK-CDVCG 170
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 26.0 bits (58), Expect = 6.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGERPYECEICG 134
C +C T+ W + +E + GE P C CG
Sbjct: 125 DCLDCHETYDWSEFVE---DFNKGEIPR-CRKCG 154
Score = 25.6 bits (57), Expect = 9.3
Identities = 5/42 (11%), Positives = 7/42 (16%), Gaps = 12/42 (28%)
Query: 130 CEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEG 171
C C + + K C C
Sbjct: 126 CLDCHETYD------------WSEFVEDFNKGEIPRCRKCGS 155
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 26.4 bits (57), Expect = 6.9
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHK 86
+ C C + F S +H
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHL 312
Score = 26.0 bits (56), Expect = 8.2
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 110 SWKQNLEVHMRTHTGE---RPYECEICGKRFSQKSACNTHKRT 149
K + E + + C C + F S +H
Sbjct: 272 LIKSDFEHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVG 314
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 26.1 bits (57), Expect = 6.9
Identities = 7/54 (12%), Positives = 10/54 (18%), Gaps = 6/54 (11%)
Query: 104 ECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTHIPYLPRV 157
C K E + + K + I LP
Sbjct: 186 SCFINQEVKYLFTGLKLRLQEEITKQSPTLQRN------ALYIKSSKISRLPAY 233
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 26.1 bits (57), Expect = 7.3
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGERPYECEICG 134
HC C + + + C++CG
Sbjct: 146 HCIGCGKVYPPQVFKSKLAEHPIKDFVK-CDVCG 178
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 25.5 bits (55), Expect = 9.6
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 23/104 (22%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISYLHV-KDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
E FA+ + ++ + + + + +H E + E +
Sbjct: 96 HEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFH--EKRFLDFARNIKEGRVFLREQA 153
Query: 126 RPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPAC 169
+ C CG H+ T P + CPAC
Sbjct: 154 TKWRCRNCG---------YVHEGTGAP--------EL---CPAC 177
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.466
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,673,824
Number of extensions: 141448
Number of successful extensions: 1806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 690
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.2 bits)