RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3356
(180 letters)
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 57.0 bits (138), Expect = 1e-12
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVHIS 91
R TG +PF+C C + F++ L H++ H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 56.3 bits (136), Expect = 3e-12
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTHI 151
R TG +P++C C + FS+ H++ H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 23.5 bits (51), Expect = 3.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
R +PF CP C+ F+ +L
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHL 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 55.0 bits (133), Expect = 1e-11
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMR-THTGERPYECEI 132
KPY C C FS +L H++ HT ERP++C++
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 43.4 bits (103), Expect = 2e-07
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC 166
+ +PY C+ CGK FS+ N H + +VH +RP C
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIK-------QVHTSERPHKC 37
Score = 31.5 bits (72), Expect = 0.005
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 55 QIHMR-THTGERPFECDV 71
H++ HT ERP +C V
Sbjct: 22 NGHIKQVHTSERPHKCQV 39
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 53.5 bits (129), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
RTHTGE+P+ C C K F QK L+ H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 52.8 bits (127), Expect = 5e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
RTHTGE+PY C C K F QK + H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 43.5 bits (103), Expect = 2e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
H +KPY C+ C+ TF KQ L++H + +
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
Score = 25.0 bits (55), Expect = 0.84
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
R H ++P+ C C+ F KQ L
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLL 24
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 53.5 bits (128), Expect = 4e-11
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
DK Y C +C +F+ K + HM H G RPY C +CGK+F K H + H
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 51.2 bits (122), Expect = 3e-10
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTH 122
++ + C CGK F KS + H +H+ C C F K +L HM+ H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYG-----CGVCGKKFKMKHHLVGHMKIH 53
Score = 38.5 bits (89), Expect = 2e-05
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 55 QIHMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
HM H G RP+ C VCGK+F K L H ++H
Sbjct: 19 DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 35.0 bits (80), Expect = 4e-04
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHCPACEGMFTTKQNL 179
++ Y C+ CGK F+ KS + H H+ RP+ C C F K +L
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL--------RPYGCGVCGKKFKMKHHL 46
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 53.0 bits (128), Expect = 4e-11
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVH 89
H+GE+P+ C CGK F++ S L H+RVH
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 52.6 bits (127), Expect = 7e-11
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
H+GE+PY C CGK FS+ S H+R H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 48.4 bits (116), Expect = 2e-09
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
H +KPY C EC FS L H R HTGE
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 23.7 bits (52), Expect = 2.8
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 55 QIHMRTHTGE 64
H R HTGE
Sbjct: 24 VQHQRVHTGE 33
Score = 23.0 bits (50), Expect = 4.4
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 157 VHPKDRPFHCPACEGMFTTKQNL 179
+H ++P+ C C F+ L
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSIL 23
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 52.1 bits (125), Expect = 9e-11
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 HMRTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
R ++CD CGK F+ S L+ H+R H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 51.3 bits (123), Expect = 2e-10
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 118 HMRTHTGERPYECEICGKRFSQKSACNTHKRTH 150
R Y+C+ CGK FS S + H+RTH
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 44.8 bits (106), Expect = 6e-08
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 85 HKRVHISYLHVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+ + + Y C EC +FS +L H RTHTGE
Sbjct: 3 SEWQQR-----ERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 24.0 bits (52), Expect = 2.1
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
+ R + C C F+ +L
Sbjct: 5 WQQRERRRYKCDECGKSFSHSSDL 28
Score = 23.2 bits (50), Expect = 4.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 55 QIHMRTHTGE 64
H RTHTGE
Sbjct: 29 SKHRRTHTGE 38
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 51.9 bits (125), Expect = 1e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 59 RTHTGERPFECDVCGKRFAQKSTLNTHKRVH 89
RTH+GE+P+EC +C RF Q T+ H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 51.9 bits (125), Expect = 1e-10
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 120 RTHTGERPYECEICGKRFSQKSACNTHKRTH 150
RTH+GE+PYEC IC RF+Q H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 38.8 bits (91), Expect = 9e-06
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVH-MRTHTGE 125
H +KPY C C A F+ +++H ++ HT
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 25.7 bits (57), Expect = 0.57
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 156 RVHPKDRPFHCPACEGMFTTKQNL 179
R H ++P+ C C FT +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTM 24
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 46.3 bits (110), Expect = 1e-08
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 122 HTGERPYECEICGKRFSQKSACNTHKRTH 150
+G+RP+ C IC F+ K+ C H + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 46.3 bits (110), Expect = 2e-08
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 61 HTGERPFECDVCGKRFAQKSTLNTHKRVH 89
+G+RPF C +C F K+ H +VH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 40.9 bits (96), Expect = 1e-06
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 94 HVKDKPYHCTECEATFSWKQNLEVHMRTHTGE 125
+P+ C C + F+ K N H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 46.1 bits (110), Expect = 2e-08
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
+ + C C F+ +++L+ H R+HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 42.2 bits (100), Expect = 4e-07
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
R F C+VC + FA++ L H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 41.8 bits (99), Expect = 7e-07
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
R + CE+C + F+++ H R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 24.5 bits (54), Expect = 1.1
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 55 QIHMRTHTGER 65
+ H R+HT E+
Sbjct: 19 KRHYRSHTNEK 29
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.9 bits (109), Expect = 3e-08
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 100 YHCTE--CEATFSWKQNLEVHMRTHTGERPYECE 131
+ C E C +F++K++L+ HM+ H+ R Y CE
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 32.8 bits (75), Expect = 0.002
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 55 QIHMRTHTGERPFECD 70
+ HM+ H+ R + C+
Sbjct: 20 KEHMKLHSDTRDYICE 35
Score = 31.2 bits (71), Expect = 0.005
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 10/41 (24%)
Query: 128 YECE--ICGKRFSQKSACNTHKRTHIPYLPRVHPKDRPFHC 166
+ C CGK F+ K H + H R + C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHS--------DTRDYIC 34
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 45.4 bits (108), Expect = 3e-08
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
K + C EC F +L H++TH ++
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 40.0 bits (94), Expect = 3e-06
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+ F C C KRF + L+ H + H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 40.0 bits (94), Expect = 3e-06
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+ + C C KRF + + H +TH
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 24.2 bits (53), Expect = 1.4
Identities = 3/11 (27%), Positives = 7/11 (63%)
Query: 55 QIHMRTHTGER 65
H++TH ++
Sbjct: 19 SKHIKTHQNKK 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 44.5 bits (106), Expect = 6e-08
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
++P++C IC + FS+ TH RTH
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 44.5 bits (106), Expect = 6e-08
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
++PF+C +C + F++ L TH R H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 43.8 bits (104), Expect = 1e-07
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTG 124
KP+ C C FS +L H+RTHTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 42.3 bits (100), Expect = 4e-07
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 98 KPYHCT--ECEATFSWKQNLEVHMRTHTGER 126
+P+ CT C F+ L+ H RTHTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 37.7 bits (88), Expect = 2e-05
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
RPF C CGKRF + L HKR H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 36.9 bits (86), Expect = 5e-05
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
RP+ C CGKRF++ HKRTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 24.6 bits (54), Expect = 1.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 55 QIHMRTHTGER 65
Q H RTHTGE+
Sbjct: 21 QRHKRTHTGEK 31
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 41.2 bits (97), Expect = 1e-06
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 98 KPYHCTE--CEATFSWKQNLEVHMRTHTGE 125
KP+ CT C ++S +NL+ H+R+HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 36.9 bits (86), Expect = 4e-05
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
+P +C C K +++ L TH R H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 36.9 bits (86), Expect = 4e-05
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
+P++C E C K +S+ TH R+H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 23.4 bits (51), Expect = 2.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 55 QIHMRTHTGE 64
+ H+R+HTGE
Sbjct: 21 KTHLRSHTGE 30
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 39.9 bits (94), Expect = 3e-06
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY+C CGK FSQ S H+R H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 39.5 bits (93), Expect = 5e-06
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P++C CGK F+Q S L H+R+H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 38.7 bits (91), Expect = 9e-06
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHT 123
KPY C EC FS L H R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 40.3 bits (94), Expect = 3e-06
Identities = 7/41 (17%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 112 KQNLEVHMRTHTGERPYECEIC--GKRFSQKSACNTHKRTH 150
+ +++ +++ ++ +EC K F ++ +H +TH
Sbjct: 4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 39.5 bits (92), Expect = 6e-06
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 77 AQKSTLNTHKRVHISYLHVKDKPYHCTECEA--TFSWKQNLEVHMRTHTGER 126
+ +++ + + + DK + C TF + N+ H++TH +R
Sbjct: 2 LPRGSIDKYVK------EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 38.0 bits (88), Expect = 3e-05
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 57 HMRTHTGERPFECDVC--GKRFAQKSTLNTHKRVH 89
++ FEC K F ++ + +H + H
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 24.5 bits (53), Expect = 1.6
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 7/27 (25%)
Query: 39 KRFFFFSFLFGPLLVPQIHMRTHTGER 65
K F + + H++TH +R
Sbjct: 28 KTFKRRYNI-------RSHIQTHLEDR 47
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 38.1 bits (89), Expect = 1e-05
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVH 89
+RP+ CD C K F + L HK+ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 38.1 bits (89), Expect = 2e-05
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTH 150
+RPY C C K F + HK++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 36.9 bits (86), Expect = 4e-05
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 97 DKPYHCTE--CEATFSWKQNLEVHMRTHTGE 125
D+PY C C+ F +L H ++H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 37.7 bits (88), Expect = 2e-05
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 98 KPYHCTE--CEATFSWKQNLEVHMRTHTGE 125
KP+ CT C FS NL H+R HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 35.0 bits (81), Expect = 2e-04
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
+PF+C CGKRF+ L TH R+H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 34.7 bits (80), Expect = 3e-04
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 126 RPYECEI--CGKRFSQKSACNTHKRTH 150
+P++C CGKRFS TH R H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 37.3 bits (87), Expect = 3e-05
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 98 KPYHCTE--CEATFSWKQNLEVHMRTHTG 124
+PY C C+ FS +L H+R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 36.1 bits (84), Expect = 8e-05
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 126 RPYEC--EICGKRFSQKSACNTHKRTH 150
RPY C E C +RFS+ + H R H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 35.8 bits (83), Expect = 1e-04
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
RP+ C V C +RF++ + L H R+H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 36.0 bits (83), Expect = 9e-05
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHI 90
E+PF CD+CG++FA+ H ++H+
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHL 27
Score = 32.9 bits (75), Expect = 0.001
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTHI 151
E+P+ C+ICG++F++ H + H+
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHL 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.3 bits (74), Expect = 0.002
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 65 RPFECDV--CGKRFAQKSTLNTHKRVH 89
RP+ C C K+FAQ + L +H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 31.9 bits (73), Expect = 0.002
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 126 RPYECEI--CGKRFSQKSACNTHKRTH 150
RPY C C K+F+Q + +H TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 31.6 bits (72), Expect = 0.004
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 98 KPYHCTE--CEATFSWKQNLEVHMRTHT 123
+PY C C F+ NL+ H+ TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 30.8 bits (69), Expect = 0.008
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
E+PY C +CG RF +K + H R+H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
Score = 30.4 bits (68), Expect = 0.009
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVHISYLH 94
E+P+ C VCG RF +K ++ H R H +
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 31
Score = 26.2 bits (57), Expect = 0.35
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTG 124
+KPY C C F K + H+R+H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 30.9 bits (69), Expect = 0.010
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 123 TGERPYECEICGKRFSQKSACNTHKRT 149
TG +PYEC IC KRF + + + H +
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHVTS 27
Score = 30.1 bits (67), Expect = 0.016
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 62 TGERPFECDVCGKRFAQKSTLNTHK 86
TG +P+EC++C KRF + + + H
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHV 25
Score = 23.2 bits (49), Expect = 6.0
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
KPY C C F W+ + H T +
Sbjct: 4 KPYECNICAKRFMWRDSFHRH-VTSCTKS 31
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 29.3 bits (65), Expect = 0.025
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHTG 124
P+ C C FS K L+ HMR HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 28.1 bits (62), Expect = 0.060
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 127 PYECEICGKRFSQKSACNTHKRTH 150
P++CE+CGK FS+K TH R H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
Score = 27.7 bits (61), Expect = 0.079
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 66 PFECDVCGKRFAQKSTLNTHKRVH 89
P +C+VCGK F++K L TH R H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 28.6 bits (63), Expect = 0.053
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
++ + C+ C+ TF + L +HM +HTGE
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHTGE 30
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 28.1 bits (63), Expect = 0.069
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
R Y C C + F A H H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
Score = 27.8 bits (62), Expect = 0.089
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
R + C C + F L H VH
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
Score = 25.8 bits (57), Expect = 0.44
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGER 126
+ Y C+ C+ F Q L HM H +R
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDR 32
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 28.3 bits (63), Expect = 0.073
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 64 ERPFECDV--CGKRFAQKSTLNTHKRVH 89
++PF C CG+RF + L HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 23.3 bits (50), Expect = 3.6
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 125 ERPYECEI--CGKRFSQKSACNTHKRTH 150
++P+ C CG+RF+ + HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 27.4 bits (60), Expect = 0.12
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
++C +C + F +KS L+ H+RVH
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
Score = 26.2 bits (57), Expect = 0.27
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
Y+C +C + F +KSA + H+R H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 27.0 bits (60), Expect = 0.15
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGE 125
C+ F + L VHMR HTGE
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHTGE 33
Score = 22.8 bits (49), Expect = 5.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 55 QIHMRTHTGE 64
+HMR HTGE
Sbjct: 24 VVHMRRHTGE 33
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.9 bits (59), Expect = 0.19
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 97 DKPYHCTECEATFSWKQNLEVHMRTHTGE 125
++P+ C C L VH+R+HTG+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 25.8 bits (56), Expect = 0.48
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 125 ERPYECEICGKRFSQKSACNTHKRTH 150
ERP++C+IC S H R+H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
Score = 25.4 bits (55), Expect = 0.66
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 64 ERPFECDVCGKRFAQKSTLNTHKRVH 89
ERPF+C +C S L H R H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 26.6 bits (58), Expect = 0.23
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 101 HCTECEATFSWKQNLEVHMRTHTGER 126
C C F K L+VH R HTGE+
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.7 bits (56), Expect = 0.43
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHT 123
PYHCT C +F K NL HM++
Sbjct: 1 PYHCTYCNFSFKTKGNLTKHMKSKA 25
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.5 bits (55), Expect = 0.63
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 65 RPFECDVCGKRFAQKSTLNTHKRVH 89
+P++C C A S+LN H R+H
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIH 26
Score = 22.8 bits (48), Expect = 4.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+PY+C+ C + S+ N H R H
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIH 26
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.8 bits (57), Expect = 0.79
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 67 FECDVCGKRFAQKSTLNTHKR--VHISYLH-VKDKPYHCTECEA 107
C C + F + L TH R H L + +PY E E
Sbjct: 16 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAER 59
Score = 24.7 bits (54), Expect = 2.5
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 128 YECEICGKRFSQKSACNTHKRT 149
+ C C + F + TH R+
Sbjct: 16 HRCLACARYFIDSTNLKTHFRS 37
Score = 23.1 bits (50), Expect = 7.8
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 97 DKP----YHCTECEATFSWKQNLEVHMRT 121
D P + C C F NL+ H R+
Sbjct: 9 DLPGGGLHRCLACARYFIDSTNLKTHFRS 37
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.2 bits (55), Expect = 0.87
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 66 PFECDVCGKRFAQKSTLNTHKR 87
P+ C +C + F ++ L H +
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQ 22
Score = 23.2 bits (50), Expect = 3.9
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 127 PYECEICGKRFSQK 140
PY C +C + F+++
Sbjct: 1 PYPCGLCNRAFTRR 14
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 25.0 bits (54), Expect = 1.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVHISY 92
F C CG F+ STL H+ + S+
Sbjct: 9 FMCLPCGIAFSSPSTLEAHQAYYCSH 34
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 24.4 bits (53), Expect = 1.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 100 YHCTECEATFSWKQNLEVHMRTHTGER 126
Y C EC L+ H+RTHT R
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 24.6 bits (53), Expect = 1.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 67 FECDVCGKRFAQKSTLNTHKRVH 89
C +CGK F + L H+ H
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQH 29
Score = 23.8 bits (51), Expect = 4.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 128 YECEICGKRFSQKSACNTHKRTH 150
C +CGK F+ + H+ H
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQH 29
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 26
Score = 24.0 bits (51), Expect = 1.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 99 PYHCTECEATFSWKQNLEVHM 119
PY C+ C F K++L+ HM
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHM 22
Score = 23.2 bits (49), Expect = 3.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 66 PFECDVCGKRFAQKSTLNTH 85
P++C C ++F QK L +H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSH 21
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 23.8 bits (51), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 98 KPYHCT--ECEATFSWKQNLEVHMRTHTGE 125
K Y C+ +C A ++ L+ H+ HTGE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.9 bits (51), Expect = 2.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 69 CDVCGKRFAQKSTLNTHKRVH 89
C++CGK F LN HK H
Sbjct: 8 CEICGKIFRDVYHLNRHKLSH 28
Score = 23.5 bits (50), Expect = 2.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRTHTGERPY 128
K C C F +L H +H+GE+PY
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 23.5 bits (50), Expect = 3.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 126 RPYECEICGKRFSQKSACNTHKRTH 150
+ CEICGK F N HK +H
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSH 28
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.4 bits (50), Expect = 2.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 69 CDVCGKRFAQKSTLNTHKRVH 89
C CGK F + S L H+ VH
Sbjct: 5 CAECGKAFVESSKLKRHQLVH 25
Score = 21.9 bits (46), Expect = 9.8
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 102 CTECEATFSWKQNLEVHMRTHTGE 125
C EC F L+ H HTGE
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTGE 28
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 23.5 bits (50), Expect = 2.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 66 PFECDVCGKRFAQKSTLNTHK 86
PFEC CGK + +K L H+
Sbjct: 1 PFECPKCGKCYFRKENLLEHE 21
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 23.5 bits (50), Expect = 3.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 64 ERPFEC--DVCGKRFAQKSTLNTHKRVH 89
+ P+EC + C KRF+ S L H++VH
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
Score = 23.1 bits (49), Expect = 4.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 125 ERPYEC--EICGKRFSQKSACNTHKRTH 150
+ PYEC E C KRFS S H++ H
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.4 bits (50), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 65 RPFECDVCGKRFAQKSTLNTH-KRVH 89
RPF+C+ C Q S L+ H K+ H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 22.7 bits (48), Expect = 4.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 98 KPYHCTE--CEATFSWKQNLEVHMRTHTGE 125
KP+ C E CE F+ +L H THTGE
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986
{Geobacter sulfurreducens [TaxId: 35554]}
Length = 111
Score = 24.5 bits (53), Expect = 5.6
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 112 KQNLEVHMRTHTGERPYECEI 132
+++ + + T GER +
Sbjct: 12 AESIRIILGTARGERVMRPDF 32
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 22.5 bits (48), Expect = 5.8
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 126 RPYECEI--CGKRFSQKSACNTHKRTH 150
+PY C++ C KR++ S+ H +T
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
>d2jz6a1 d.325.1.1 (A:6-75) Ribosomal protein L28 (L28p) {Thermotoga
maritima [TaxId: 2336]}
Length = 70
Score = 23.4 bits (51), Expect = 6.0
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 130 CEICGKRF-SQKSACNTHKRTHIPYLPRVHPK 160
CE+CGK S + ++ K++ + P +
Sbjct: 5 CEVCGKAPRSGNTVSHSDKKSERWFRPNLQKV 36
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 22.9 bits (49), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 127 PYECEICGKRFSQKSACNTH--KRTHI 151
EC +CG ++S + + H + HI
Sbjct: 6 KPECTLCGVKYSARLSIRDHIFSKQHI 32
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.3 bits (47), Expect = 6.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 100 YHCTECEATFSWKQNLEVHMR 120
+HC C+ + K +L VH+R
Sbjct: 3 FHCPHCDTVIARKSDLGVHLR 23
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.4 bits (47), Expect = 7.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 98 KPYHCTECEATFSWKQNLEVHMRT-HTGER 126
K Y C CE + NL+ H++T H+ E+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 24.6 bits (53), Expect = 8.0
Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 12/66 (18%)
Query: 108 TFSWKQNLEVHMRTHTGERP-----------YECEICGKRFSQKSACNTHKRTHIP-YLP 155
+ ++ G R Y + GK ++ T + P +L
Sbjct: 218 AYYKDHYFRAFVKLKDGARKGDETLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLG 277
Query: 156 RVHPKD 161
+ +
Sbjct: 278 PLKDEK 283
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 22.8 bits (49), Expect = 8.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 115 LEVHMRTHTGERPYECEICGKRFSQ 139
+E R T ++C +C F+
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTD 26
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 23.8 bits (51), Expect = 9.0
Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 17/81 (20%)
Query: 99 PYHCTECEATFSWKQNLEVHMRTHTGERPYECEICGKRFSQKSACNTH-----KRTHIPY 153
C EC + VH+R C CG + + H T P
Sbjct: 18 ALGCEECLKI----GSPWVHLRI--------CRTCGHVGCCDDSPHKHATRHFHATGHPI 65
Query: 154 LPRVHPKDRPFHCPACEGMFT 174
+ P + C E MF
Sbjct: 66 IEGYDPPEGWGWCYVDEVMFD 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.466
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,657
Number of extensions: 32555
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 189
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)