BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy336
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VBX1|NEMF_DROME Nuclear export mediator factor NEMF homolog OS=Drosophila
melanogaster GN=Clbn PE=1 SV=2
Length = 992
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 85/117 (72%), Gaps = 2/117 (1%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
+RKHLKNKRLE ++ +G DRI+D QFGTG+A YH+I+ELYDRGN++LTD + L +LRP
Sbjct: 79 LRKHLKNKRLEKVQQMGSDRIVDFQFGTGDAAYHVILELYDRGNVILTDYELTTLYILRP 138
Query: 61 HSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
H++GE +RF +REKYPV+ AK + E L +L + G+ +++IL P L GP
Sbjct: 139 HTEGENLRFAMREKYPVERAKQPTKELELEALVKLLENARNGDYLRQILTPNLDCGP 195
>sp|Q8CCP0|NEMF_MOUSE Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1
SV=2
Length = 1064
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
RKHLK++RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR
Sbjct: 78 CRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRF 137
Query: 61 HSD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
+D ++V+F VRE+YP+D A+ T E L E+ GE +K++L P L GP
Sbjct: 138 RTDEADDVKFAVRERYPIDHARAAEPLLTLERLTEVIAAAPKGEVLKRVLNPLLPYGP 195
>sp|O60524|NEMF_HUMAN Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1
SV=4
Length = 1076
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRP 60
RKHLK++RL S K LG+DRI+D QFG+ EA YH+I+ELYDRGNIVLTD +Y+ILN+LR
Sbjct: 78 CRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYVILNILRF 137
Query: 61 HSD-GEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL--GP 115
+D ++V+F VRE+YP+D A+ T E L E+ GE +K++L P L GP
Sbjct: 138 RTDEADDVKFAVRERYPLDHARAAEPLLTLERLTEIVASAPKGELLKRVLNPLLPYGP 195
>sp|Q9USN8|YJY1_SCHPO Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC132.01c PE=1 SV=2
Length = 1021
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAE------YHIIVELYDRGNIVLTDKDYII 54
+RKH+K++RL + LG DR++ FG G + Y+++ E + GN++L D Y I
Sbjct: 77 LRKHIKSRRLTGVSQLGTDRVLVFTFGGGANDQDPDWTYYLVCEFFAAGNVLLLDGHYKI 136
Query: 55 LNVLRPHSDGEEVRFYVREKYPVD 78
L++LR + ++ + V +KY +D
Sbjct: 137 LSLLRVVTFDKDQVYAVGQKYNLD 160
>sp|Q12532|TAE2_YEAST Translation-associated element 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TAE2 PE=1 SV=1
Length = 1038
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
+RKHLK KRL +LK + DRI+ LQF G +++++E + GN++L D++ I+ + R
Sbjct: 80 LRKHLKAKRLTALKQVDQDRILVLQFADG--HFYLVLEFFSAGNVILLDENRRIMALQR 136
>sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1625 PE=4 SV=1
Length = 671
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
+RK+LKN +L ++ + DR++ F T + Y ++ EL+ GNI+ + + I+ LR
Sbjct: 83 LRKYLKNAKLIKIEQVNFDRVVIFHFETRDGIYKLVAELFGDGNIIFLNNEDTIIAPLR 141
>sp|Q6BZA0|ALO_DEBHA D-arabinono-1,4-lactone oxidase OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ALO1 PE=3 SV=2
Length = 557
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILN 56
+RK L+ S + G + I+ FG EY+ + E D N+ L+ KD+ + N
Sbjct: 496 LRKQLEFGGKTSYSMKGFNPILKKWFGENLVEYNKVRESMDPDNVFLSGKDWAVRN 551
>sp|Q83A90|UBIE_COXBU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=ubiE PE=3 SV=1
Length = 250
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
+ + K+ + +L RI+DL GTG+ I + D G +V+ D + +LNV R
Sbjct: 46 IHRWWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLVGDEGEVVIADINAAMLNVGR 104
>sp|A9KD75|UBIE_COXBN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ubiE
PE=3 SV=1
Length = 250
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
+ + K+ + +L RI+DL GTG+ I + D G +V+ D + +LNV R
Sbjct: 46 IHRWWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLVGDEGEVVIADINAAMLNVGR 104
>sp|B6J3P6|UBIE_COXB2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Coxiella burnetii (strain CbuG_Q212) GN=ubiE PE=3
SV=1
Length = 250
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
+ + K+ + +L RI+DL GTG+ I + D G +V+ D + +LNV R
Sbjct: 46 IHRWWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLVGDEGEVVIADINAAMLNVGR 104
>sp|B6J676|UBIE_COXB1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Coxiella burnetii (strain CbuK_Q154) GN=ubiE PE=3
SV=1
Length = 250
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
+ + K+ + +L RI+DL GTG+ I + D G +V+ D + +LNV R
Sbjct: 46 IHRWWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLVGDEGEVVIADINAAMLNVGR 104
>sp|A9N9F4|UBIE_COXBR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Coxiella burnetii (strain RSA 331 / Henzerling II)
GN=ubiE PE=3 SV=1
Length = 250
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLR 59
+ + K+ + +L RI+DL GTG+ I + D G +V+ D + +LNV R
Sbjct: 46 IHRCWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLVGDEGEVVIADINAAMLNVGR 104
>sp|O88990|ACTN3_MOUSE Alpha-actinin-3 OS=Mus musculus GN=Actn3 PE=2 SV=1
Length = 900
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 45 IVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGE 103
I+ DK+YI LR E+ + +R P SGAP+ + Y F+ YGE
Sbjct: 843 ILAGDKNYITPEELRRELPAEQAEYCIRRMAPYK----GSGAPSGALDYVAFSSALYGE 897
>sp|Q493Q9|RSMH_BLOPB Ribosomal RNA small subunit methyltransferase H OS=Blochmannia
pennsylvanicus (strain BPEN) GN=rsmH PE=3 SV=1
Length = 329
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 5 LKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDG 64
L N+ ++SL + ID FG+G I+ +L RG ++ DKD + + + + H
Sbjct: 23 LLNEAIQSLNIKATGMYIDGTFGSGGHSKLILSQLNKRGRLLAIDKDLLAVKIGK-HIAE 81
Query: 65 EEVRFYV 71
++ RF +
Sbjct: 82 QDDRFTI 88
>sp|Q0I0Y7|DNAA_HAES1 Chromosomal replication initiator protein DnaA OS=Haemophilus
somnus (strain 129Pt) GN=dnaA PE=3 SV=1
Length = 452
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Query: 3 KHLKNKRLESLKLL--GLDRII--DLQF-----GTGEAEYHIIVELYDRG-NIVLTDKDY 52
K LK+ R++S K +D ++ D+QF GT E +HI L++RG I+LT Y
Sbjct: 197 KALKSDRMDSFKRFYRTVDALLIDDIQFFAGKDGTQEEFFHIFNSLFERGRQIILTSDRY 256
>sp|B0TZP1|UBIE_FRAP2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Francisella philomiragia subsp. philomiragia (strain
ATCC 25017) GN=ubiE PE=3 SV=1
Length = 250
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 19 DRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNV 57
D+++DL GTG+ Y + +G +VL+D + +L V
Sbjct: 64 DKVLDLAGGTGDLAYKFCQMVGSQGKVVLSDINSSMLEV 102
>sp|Q0III9|ACTN3_BOVIN Alpha-actinin-3 OS=Bos taurus GN=ACTN3 PE=2 SV=1
Length = 901
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 45 IVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGE 103
I+ DK+YI LR E+ + +R P A GAP + Y F+ YGE
Sbjct: 844 ILAGDKNYITAEELRRELPAEQAEYCIRRMAPYKGA----GAPAGALDYVAFSSALYGE 898
>sp|Q8D2Y8|RSMH_WIGBR Ribosomal RNA small subunit methyltransferase H OS=Wigglesworthia
glossinidia brevipalpis GN=rsmH PE=3 SV=1
Length = 309
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 7 NKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKD 51
N+ ++S+K++ ID FG G I+ +L ++G +++ D+D
Sbjct: 8 NEVIKSIKIIPNGTYIDATFGCGGHSRCILSKLNEKGKLIVIDRD 52
>sp|Q8CDA1|SAC2_MOUSE Phosphatidylinositide phosphatase SAC2 OS=Mus musculus GN=Inpp5f
PE=1 SV=1
Length = 1132
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 68 RFYV---REKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKK 107
R+Y+ ++ Y + + G P E LY +FTKEK E + K
Sbjct: 547 RYYLSRFKDAYRQAVIDLMQGVPVTEDLYSIFTKEKEHEALHK 589
>sp|Q6CG88|ALO_YARLI D-arabinono-1,4-lactone oxidase OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ALO1 PE=3 SV=1
Length = 526
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 5 LKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVL 58
LK+ E K+LGL IID +G ++ + E YD + L+ K ++ N L
Sbjct: 472 LKDNESEDGKMLGLKPIIDEWYGDDLKQWKSLREKYDPTGVFLSGKVWMDRNGL 525
>sp|P30995|BXE_CLOBU Botulinum neurotoxin type E OS=Clostridium butyricum PE=1 SV=2
Length = 1251
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 43 GNIVLTDKDYIILNVLRPHS 62
GN +L DK+Y +LNVL+P++
Sbjct: 1077 GNYLLYDKEYYLLNVLKPNN 1096
>sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium botulinum PE=1 SV=2
Length = 1251
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 43 GNIVLTDKDYIILNVLRPHS 62
GN +L DK+Y +LNVL+P++
Sbjct: 1077 GNYLLYDKEYYLLNVLKPNN 1096
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.142 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,024,344
Number of Sequences: 539616
Number of extensions: 1934761
Number of successful extensions: 5064
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5032
Number of HSP's gapped (non-prelim): 39
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)