Query psy336
Match_columns 121
No_of_seqs 136 out of 783
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:01:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3doa_A Fibrinogen binding prot 100.0 7.7E-30 2.6E-34 200.4 6.7 117 1-119 78-205 (288)
2 3doa_A Fibrinogen binding prot 66.5 11 0.00037 28.7 5.5 47 3-50 16-63 (288)
3 1b2p_A Protein (lectin); manno 52.5 15 0.00051 24.0 3.6 24 36-59 64-87 (119)
4 4h3o_A Lectin; cadmium, plant 50.9 17 0.00058 23.2 3.6 25 36-60 54-78 (105)
5 3a0c_A Mannose/sialic acid-bin 50.8 17 0.00058 23.3 3.6 24 36-59 54-77 (110)
6 2kzk_A Uncharacterized protein 41.8 10 0.00035 24.8 1.3 31 16-48 3-33 (107)
7 2dpf_A Curculin; sweet taste, 39.6 32 0.0011 22.0 3.6 24 36-59 54-77 (115)
8 2xpn_B SPT6, chromatin structu 39.1 14 0.00049 18.2 1.3 11 34-44 3-13 (26)
9 3r0e_B Lectin; carbohydrate bi 36.8 38 0.0013 21.6 3.6 25 36-60 57-81 (110)
10 3mez_B Mannose-specific lectin 35.0 41 0.0014 21.5 3.5 25 36-60 60-84 (113)
11 1xd5_A Gastrodianin-1, antifun 34.8 38 0.0013 21.4 3.4 23 36-59 53-75 (112)
12 3v67_A Sensor protein CPXA; PA 33.2 24 0.00082 24.1 2.2 19 43-61 56-74 (138)
13 3dzw_A Agglutinin; lectin, man 32.4 48 0.0017 20.9 3.5 24 36-59 53-76 (109)
14 3r0e_A Lectin; carbohydrate bi 31.1 52 0.0018 20.9 3.5 24 36-59 52-75 (109)
15 4hi4_A Aerotaxis transducer AE 29.3 35 0.0012 20.8 2.3 19 43-61 16-34 (121)
16 3r8s_N 50S ribosomal protein L 28.1 74 0.0025 21.4 3.9 28 15-42 91-118 (120)
17 2kzb_A Autophagy-related prote 27.2 19 0.00065 23.9 0.8 32 16-49 7-38 (118)
18 3bqa_A Sensor protein PHOQ; hi 25.6 39 0.0013 23.7 2.2 21 43-63 42-62 (148)
19 3a0s_A Sensor protein; PAS-fol 24.0 53 0.0018 17.5 2.3 16 45-60 5-20 (96)
20 3b33_A Sensor protein; structu 21.4 62 0.0021 18.8 2.4 18 44-61 19-36 (115)
21 2cqm_A Ribosomal protein L17 i 20.6 67 0.0023 21.6 2.6 27 16-42 82-108 (122)
No 1
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=99.96 E-value=7.7e-30 Score=200.39 Aligned_cols=117 Identities=23% Similarity=0.320 Sum_probs=101.3
Q ss_pred CccccCCCceeEEEecCCCeEEEEEEccCCc-----eEEEEEEeccC-ceEEEEcCCCcEEEeeccccCC----cceeec
Q psy336 1 MRKHLKNKRLESLKLLGLDRIIDLQFGTGEA-----EYHIIVELYDR-GNIVLTDKDYIILNVLRPHSDG----EEVRFY 70 (121)
Q Consensus 1 LRk~l~g~ri~~i~Q~~~DRIv~~~f~~~~~-----~~~L~~El~g~-~Niil~d~~~~Il~~lr~~~~~----~~v~~g 70 (121)
|||||+|++|++|+|+|+||||.|+|+++++ .++|++||||+ ||+||||++++||+++|+++.+ |.+.||
T Consensus 78 LRk~L~g~ri~~i~Q~~~DRIv~~~f~~~~e~g~~~~~~Li~El~gr~SNiIL~d~~~~Il~~lr~v~~~~~~~R~i~pG 157 (288)
T 3doa_A 78 FRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTPNTNHYRTVMPG 157 (288)
T ss_dssp HHHHHTTCEEEEEEESTTSSEEEEEEEEECTTSCEEEEEEEEECCGGGCEEEEEETTCBEEEESSCBCC-----CCBSTT
T ss_pred HHHHhCCCEEEEEEECCCceEEEEEEeeccccCCccceEEEEEEcCCCceEEEEcCCCcEeeeeeccCccccccceecCC
Confidence 7999999999999999999999999999753 79999999999 7999999999999999999643 466788
Q ss_pred ccccCCCCcccCCCCCCCHHHHHHHHHhccCchhhHhhhhccC-CCCCcc
Q psy336 71 VREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILVPQL-GPQAKI 119 (121)
Q Consensus 71 ~~~~yp~~~~~~~~~~~~~e~~~~~l~~~~~~~~l~~~L~~~l-glg~~~ 119 (121)
..|.+||++.+.+|.+.+.++|.+.+... ..+++++|++.+ |+||.+
T Consensus 158 ~~Y~~Pp~~~k~~p~~~~~e~~~~~l~~~--~~~l~~~l~~~~~G~s~~l 205 (288)
T 3doa_A 158 FNYEAPPTQHKINPYDITGAEVLKYIDFN--AGNIAKQLLNQFEGFSPLI 205 (288)
T ss_dssp SBCCCCCCCCCBCGGGCCHHHHGGGCCGG--GCCHHHHHHHHBTTCCHHH
T ss_pred CcccCCccccCCCcccCCHHHHHHHHhhC--cchHHHHHHHHcCCCCHHH
Confidence 77777888788899999999998887653 246889997776 999875
No 2
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=66.48 E-value=11 Score=28.73 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=35.1
Q ss_pred cccCCCceeEEEecCCCeEEEEEEccCCceEEEEEEeccC-ceEEEEcC
Q psy336 3 KHLKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDR-GNIVLTDK 50 (121)
Q Consensus 3 k~l~g~ri~~i~Q~~~DRIv~~~f~~~~~~~~L~~El~g~-~Niil~d~ 50 (121)
+.|.|+||.+|.|++. ..+.|.|......+.|+++.=+. .=+.+++.
T Consensus 16 ~~l~g~ri~kIyq~~~-~~l~l~l~~~~~~~~L~ls~~p~~~ri~lt~~ 63 (288)
T 3doa_A 16 QFLTTGRVHKINQPDN-DTILMVVRQNRQNHQLLLSIHPNFSRLQLTTK 63 (288)
T ss_dssp GGGTTCEEEEEEEEET-TEEEEEEEETTEEEEEEEECCTTTCEEEEECC
T ss_pred HhhhCceEEEEEcCCC-cEEEEEEEcCCCceEEEEEECCCceEEEEcCC
Confidence 5689999999999964 45678886666677899888554 45677763
No 3
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=52.51 E-value=15 Score=24.02 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=19.3
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
++.|...||++|.|.++.+++.-.
T Consensus 64 ~l~l~~dGNLVl~d~~~~~lW~S~ 87 (119)
T 1b2p_A 64 RAVLQPDGVLVVITNENVTVWQSP 87 (119)
T ss_dssp EEEECTTSCEEEECTTCCEEEECS
T ss_pred EEEEccCCEEEEEeCCCcEEEcCC
Confidence 466766699999998889988764
No 4
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=50.90 E-value=17 Score=23.20 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=19.5
Q ss_pred EEEeccCceEEEEcCCCcEEEeecc
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLRP 60 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr~ 60 (121)
.+.|-..||++|.|.+++++++-..
T Consensus 54 ~L~l~~dGnLvL~d~~~~~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGRSLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCCEEEECCC
T ss_pred EEEEeCCccEEEECCCcEEEEEecC
Confidence 3556566999999999999987643
No 5
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=50.81 E-value=17 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
.+.|...||++|.|.++.+++.-.
T Consensus 54 ~l~l~~dGNLVl~~~~~~~~W~S~ 77 (110)
T 3a0c_A 54 RLTLHNNGNLVIYDQSNRVIWQTK 77 (110)
T ss_dssp EEEECTTSCEEEECTTCCEEEECC
T ss_pred EEEEeCCCCEEEECCCCcEEEecC
Confidence 466766699999998888888754
No 6
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=41.75 E-value=10 Score=24.77 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=24.5
Q ss_pred cCCCeEEEEEEccCCceEEEEEEeccCceEEEE
Q psy336 16 LGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLT 48 (121)
Q Consensus 16 ~~~DRIv~~~f~~~~~~~~L~~El~g~~Niil~ 48 (121)
+..||.+.++.+.++. .|++-||.+.|+|+-
T Consensus 3 ~~N~~~L~i~~~~~DN--SL~F~L~N~TN~ii~ 33 (107)
T 2kzk_A 3 HMNDPLLHVEVSNEDN--SLHFILYNKTNIIIP 33 (107)
T ss_dssp --CCSCCEEEECCBTT--BCCEEEECCSSSCCC
T ss_pred CCCCceeEEEEccCCC--eEEEEEecCCceEec
Confidence 3578999999998874 578889999998886
No 7
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A*
Probab=39.62 E-value=32 Score=22.01 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=18.2
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
.+.|...||++|.|.++.+++.-.
T Consensus 54 ~l~l~~~GnLvl~d~~~~~vW~S~ 77 (115)
T 2dpf_A 54 RLTLLSDGNLVIYDHNNNDVWGSA 77 (115)
T ss_dssp EEEECTTSCEEEECTTCCEEEECC
T ss_pred EEEECCCCcEEEECCCceEEEEcC
Confidence 455666699999998888888743
No 8
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=39.11 E-value=14 Score=18.24 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=9.1
Q ss_pred EEEEEeccCce
Q psy336 34 HIIVELYDRGN 44 (121)
Q Consensus 34 ~L~~El~g~~N 44 (121)
+|+.|+||-||
T Consensus 3 slFyEIFGtG~ 13 (26)
T 2xpn_B 3 HMFFEIFGTGE 13 (26)
T ss_pred cEEEEEecCCc
Confidence 68899999875
No 9
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=36.82 E-value=38 Score=21.63 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEeccCceEEEEcCCCcEEEeecc
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLRP 60 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr~ 60 (121)
.+.|-..||++|.|.++.+++....
T Consensus 57 ~l~l~~dGNLvl~d~~~~~iW~S~t 81 (110)
T 3r0e_B 57 FLRLNHKGELIIKDDDFKTIWSSRS 81 (110)
T ss_dssp EEEECTTSCEEEECTTCCEEEECCC
T ss_pred EEEEeCCCcEEEEeCCCCEEEEcCC
Confidence 4566666999999988888887643
No 10
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=35.04 E-value=41 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.9
Q ss_pred EEEeccCceEEEEcCCCcEEEeecc
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLRP 60 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr~ 60 (121)
.+.|-..||++|.|.++.+++....
T Consensus 60 ~l~l~~dGNLVl~d~~~~~iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNTVFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEECTTSCEEEECSC
T ss_pred EEEEeCCCcEEEECCCCCEEEECCC
Confidence 4556666999999988888887644
No 11
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=34.82 E-value=38 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=18.0
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
.+.|...||++|.| ++.+++.-.
T Consensus 53 ~l~l~~~GNLvl~d-~~~~~W~S~ 75 (112)
T 1xd5_A 53 VLKMQNDGNLVIYS-GSRAIWASN 75 (112)
T ss_dssp EEEECTTSCEEEEE-TTEEEEECC
T ss_pred EEEEeCCCCEEEEc-CCEEEEECC
Confidence 55676669999999 888888753
No 12
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=33.21 E-value=24 Score=24.14 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=16.2
Q ss_pred ceEEEEcCCCcEEEeeccc
Q psy336 43 GNIVLTDKDYIILNVLRPH 61 (121)
Q Consensus 43 ~Niil~d~~~~Il~~lr~~ 61 (121)
.-++|||.+|.||.+.++.
T Consensus 56 ~r~~l~d~eG~Il~~~~~~ 74 (138)
T 3v67_A 56 PRVFFSDYNGNVLTTDKRS 74 (138)
T ss_dssp CEEEEECTTSCEECCCCSC
T ss_pred ccEEEEcCCCCEecCCccc
Confidence 3599999999999998764
No 13
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=32.40 E-value=48 Score=20.93 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=18.3
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
.+.|-..||++|.|.++.++++..
T Consensus 53 ~l~l~~dGNLvl~~~~~~~~W~S~ 76 (109)
T 3dzw_A 53 HLSMQSDGNLVVYSPRNNPIWASN 76 (109)
T ss_dssp EEEECTTSCEEEECTTSCEEEECC
T ss_pred EEEEeCCCCEEEECCCCCEEEECC
Confidence 455655699999998888888653
No 14
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=31.05 E-value=52 Score=20.88 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=18.4
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
.+.|-..||+++.|.++.++++-.
T Consensus 52 ~l~l~~dGnLvl~d~~~~~vWss~ 75 (109)
T 3r0e_A 52 KLTLTDYGELVIKNGDGSTVWKSG 75 (109)
T ss_dssp EEEECTTSCEEEECTTSCEEEECC
T ss_pred EEEEcCCCeEEEEeCCCCEEEcCC
Confidence 456666699999998888888643
No 15
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=29.27 E-value=35 Score=20.78 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.3
Q ss_pred ceEEEEcCCCcEEEeeccc
Q psy336 43 GNIVLTDKDYIILNVLRPH 61 (121)
Q Consensus 43 ~Niil~d~~~~Il~~lr~~ 61 (121)
.-++++|.+|+|+++.+..
T Consensus 16 ~gviv~D~~g~I~~~N~a~ 34 (121)
T 4hi4_A 16 ANVMIADNDLNIIYMNRTV 34 (121)
T ss_dssp SEEEEEETTCBEEEECHHH
T ss_pred ccEEEEcCCCeEEEecHHH
Confidence 3688999999999987543
No 16
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=28.07 E-value=74 Score=21.41 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.6
Q ss_pred ecCCCeEEEEEEccCCceEEEEEEeccC
Q psy336 15 LLGLDRIIDLQFGTGEAEYHIIVELYDR 42 (121)
Q Consensus 15 Q~~~DRIv~~~f~~~~~~~~L~~El~g~ 42 (121)
+=|+-||+.+.+..+|..-.-++||..+
T Consensus 91 ~GGYTRI~K~~~R~GD~A~maiiELVd~ 118 (120)
T 3r8s_N 91 AGGYTRILKCGFRAGDNAPMAYIELVDR 118 (120)
T ss_dssp CSCCEEEEEEEECTTTCCEEEEEEESSC
T ss_pred CCCeEEEEECCCCCCCCcCeEEEEEecC
Confidence 3488999999999988888889999754
No 17
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=27.23 E-value=19 Score=23.90 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=26.9
Q ss_pred cCCCeEEEEEEccCCceEEEEEEeccCceEEEEc
Q psy336 16 LGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTD 49 (121)
Q Consensus 16 ~~~DRIv~~~f~~~~~~~~L~~El~g~~Niil~d 49 (121)
...||-+.++++.++. .|+|.++.++|.+|--
T Consensus 7 ~pn~~sL~Itvs~rDn--sL~F~lyNntn~~lpG 38 (118)
T 2kzb_A 7 PPNERSLQITMNQRDN--SLYFQLFNNTNSVLAG 38 (118)
T ss_dssp CSSCCCEEEEEEEETT--EEEEEEEECSSSCCCS
T ss_pred CCCCccEEEEEecCCC--eEEEEEecCCceeccC
Confidence 4689999999999874 6889999999988863
No 18
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=25.55 E-value=39 Score=23.65 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=18.0
Q ss_pred ceEEEEcCCCcEEEeeccccC
Q psy336 43 GNIVLTDKDYIILNVLRPHSD 63 (121)
Q Consensus 43 ~Niil~d~~~~Il~~lr~~~~ 63 (121)
+=+++-|++|+++|+-|+++.
T Consensus 42 tLvlIYDe~G~lLW~qr~vP~ 62 (148)
T 3bqa_A 42 TMTLIYDENGQLLWAQRDVPW 62 (148)
T ss_dssp CEEEEECTTSCEEEESSCCHH
T ss_pred eEEEEEcCCCcEEEecCcchH
Confidence 447888999999999999883
No 19
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=24.02 E-value=53 Score=17.47 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=12.8
Q ss_pred EEEEcCCCcEEEeecc
Q psy336 45 IVLTDKDYIILNVLRP 60 (121)
Q Consensus 45 iil~d~~~~Il~~lr~ 60 (121)
++++|.+++|+.+...
T Consensus 5 i~~~d~~g~i~~~N~~ 20 (96)
T 3a0s_A 5 IITLSKDGRITEWNKK 20 (96)
T ss_dssp EEEEETTSBEEEECHH
T ss_pred EEEEcCCCCEeehhHH
Confidence 6788999999987644
No 20
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.43 E-value=62 Score=18.77 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=14.1
Q ss_pred eEEEEcCCCcEEEeeccc
Q psy336 44 NIVLTDKDYIILNVLRPH 61 (121)
Q Consensus 44 Niil~d~~~~Il~~lr~~ 61 (121)
-++++|.+|+|+++....
T Consensus 19 ~i~~~D~~g~I~~~N~aa 36 (115)
T 3b33_A 19 ATLILDDGLAIRYANPAA 36 (115)
T ss_dssp EEEEECTTCBEEEECHHH
T ss_pred eEEEECCCCcEEEECHHH
Confidence 478899999999876543
No 21
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=20.59 E-value=67 Score=21.64 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=21.6
Q ss_pred cCCCeEEEEEEccCCceEEEEEEeccC
Q psy336 16 LGLDRIIDLQFGTGEAEYHIIVELYDR 42 (121)
Q Consensus 16 ~~~DRIv~~~f~~~~~~~~L~~El~g~ 42 (121)
=|+-||+.+.+..+|..-.-++||.+.
T Consensus 82 GGYTRI~K~~~R~GD~A~maiIELVd~ 108 (122)
T 2cqm_A 82 GGYTRMLQIPNRSLDRAKMAVIEYKGN 108 (122)
T ss_dssp SCCEEEEEECCCSSSCCCEEEEEESSC
T ss_pred CCeeEEEECCCCCCCCCCeEEEEeCCC
Confidence 478899999888887767778888755
Done!