Query psy336
Match_columns 121
No_of_seqs 136 out of 783
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 23:01:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlpa2 b.78.1.1 (A:116-235) F 49.4 8.2 0.00059 23.9 3.5 25 35-59 68-92 (120)
2 d1jpca_ b.78.1.1 (A:) Lectin ( 37.8 17 0.0012 21.7 3.6 25 36-60 53-77 (108)
3 d1xj3a1 d.110.3.2 (A:154-259) 35.9 11 0.00079 20.8 2.3 18 45-62 3-20 (106)
4 d2hkja1 a.156.1.3 (A:229-306) 34.1 14 0.001 20.9 2.6 35 84-118 5-40 (78)
5 d1v9ya_ d.110.3.2 (A:) Direct 31.1 14 0.00098 20.7 2.2 19 44-62 13-31 (113)
6 d1kj1a_ b.78.1.1 (A:) Lectin ( 29.7 27 0.0019 20.8 3.5 24 36-59 54-77 (109)
7 d1xd5a_ b.78.1.1 (A:) Gastrodi 27.8 30 0.0022 20.4 3.5 23 37-59 85-107 (112)
8 d1ijwc_ a.4.1.2 (C:) HIN recom 26.1 12 0.00085 19.7 1.1 29 87-119 6-37 (47)
9 d3duea1 d.98.2.1 (A:20-145) Pu 25.7 60 0.0044 19.6 4.8 45 2-51 21-67 (126)
10 d1mzua_ d.110.3.1 (A:) PYP dom 23.3 24 0.0018 20.5 2.3 19 44-62 15-33 (110)
11 d1k82a2 b.113.1.1 (A:1-128) DN 21.8 70 0.0051 19.4 4.6 39 5-49 43-81 (128)
12 d1b2pa_ b.78.1.1 (A:) Lectin ( 20.8 50 0.0036 20.0 3.6 24 36-59 64-87 (119)
13 d1jmca1 b.40.4.3 (A:183-298) R 20.4 26 0.0019 21.1 2.1 17 43-59 40-56 (116)
14 d2cqma1 d.188.1.1 (A:28-136) P 20.2 33 0.0024 21.0 2.6 27 16-42 75-101 (109)
15 d2b7ka1 c.47.1.10 (A:111-279) 20.1 37 0.0027 20.0 2.8 16 43-58 131-146 (169)
No 1
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Probab=49.38 E-value=8.2 Score=23.89 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.1
Q ss_pred EEEEeccCceEEEEcCCCcEEEeec
Q psy336 35 IIVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 35 L~~El~g~~Niil~d~~~~Il~~lr 59 (121)
..++|...||++|.|.++++++.-.
T Consensus 68 ~~~~l~~~GnLvl~d~~~~~lW~S~ 92 (120)
T d1dlpa2 68 CRAVLQPNGRMDVLTNQNIAVWTSG 92 (120)
T ss_dssp CEEEEETTTEEEEEETTTEEEEECC
T ss_pred EEEEEeCCeeEEEEcCCCCEEEEeC
Confidence 4678888899999999999988754
No 2
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]}
Probab=37.81 E-value=17 Score=21.71 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=20.2
Q ss_pred EEEeccCceEEEEcCCCcEEEeecc
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLRP 60 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr~ 60 (121)
.++|...||++|.|.+++++++...
T Consensus 53 ~l~l~~~Gnlvl~~~~g~~vWsS~t 77 (108)
T d1jpca_ 53 FLSMQTDGNLVVYNPSNKPIWASNT 77 (108)
T ss_dssp EEEECTTSCEEEECTTCCEEEECCC
T ss_pred EEEEeccceEEEECCCccceEEccc
Confidence 4566667999999999999998643
No 3
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=35.87 E-value=11 Score=20.80 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.9
Q ss_pred EEEEcCCCcEEEeecccc
Q psy336 45 IVLTDKDYIILNVLRPHS 62 (121)
Q Consensus 45 iil~d~~~~Il~~lr~~~ 62 (121)
++++|.+|+|+.+.....
T Consensus 3 i~~~D~~G~I~~~N~a~~ 20 (106)
T d1xj3a1 3 MIVIDGHGIIQLFSTAAE 20 (106)
T ss_dssp EEEEETTSBEEEECHHHH
T ss_pred EEEECCCCcEEEEcHHHH
Confidence 789999999999876544
No 4
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=34.07 E-value=14 Score=20.89 Aligned_cols=35 Identities=20% Similarity=0.067 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHhccCchhhHhhhhc-cCCCCCc
Q psy336 84 SGAPTQEMLYELFTKEKYGEQIKKILVP-QLGPQAK 118 (121)
Q Consensus 84 ~~~~~~e~~~~~l~~~~~~~~l~~~L~~-~lglg~~ 118 (121)
|..++.+.|.+++++.+....+...+.+ +-|+|+.
T Consensus 5 P~~v~~~~l~~~l~~~~~~ik~~l~lq~~f~GvGn~ 40 (78)
T d2hkja1 5 PYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDT 40 (78)
T ss_dssp GGGCCHHHHHHHHHTCSSCCBHHHHHHHHSSSCCHH
T ss_pred CCCCCHHHHHHHHHhcCCcchHHHHHHHHhcccCHH
Confidence 4557899999999876544456666644 4488764
No 5
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=31.11 E-value=14 Score=20.68 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=15.3
Q ss_pred eEEEEcCCCcEEEeecccc
Q psy336 44 NIVLTDKDYIILNVLRPHS 62 (121)
Q Consensus 44 Niil~d~~~~Il~~lr~~~ 62 (121)
-++++|.+|+|+++.+...
T Consensus 13 ~i~~~d~~g~i~~~N~~~~ 31 (113)
T d1v9ya_ 13 GAVLINENDEVMFFNPAAE 31 (113)
T ss_dssp EEEEECTTSBEEEECHHHH
T ss_pred cEEEEeCCCCEEEEchhHh
Confidence 5789999999999876433
No 6
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]}
Probab=29.69 E-value=27 Score=20.83 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=19.0
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
.++|-..||++|.|.++.+++...
T Consensus 54 ~l~l~~dGnLvl~~~~g~~vW~s~ 77 (109)
T d1kj1a_ 54 KAVLQSDGNFVVYDAEGRSLWASH 77 (109)
T ss_dssp EEEECTTSCEEEECSSSCEEEECC
T ss_pred EEEEcCCceEEEEeCCCcEEEEEe
Confidence 356666699999999999988764
No 7
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]}
Probab=27.82 E-value=30 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=16.3
Q ss_pred EEeccCceEEEEcCCCcEEEeec
Q psy336 37 VELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 37 ~El~g~~Niil~d~~~~Il~~lr 59 (121)
+.|...||++|.|.++.++++-.
T Consensus 85 l~L~ddGNlvly~~~~~~~W~S~ 107 (112)
T d1xd5a_ 85 LILQRDRNVVIYDNSNNAIWATH 107 (112)
T ss_dssp EEECTTSCEEEECTTSCEEEECC
T ss_pred EEEcCCCCEEEECCCCcEEecCC
Confidence 34555588888888788877653
No 8
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=26.12 E-value=12 Score=19.72 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=16.8
Q ss_pred CCHHH---HHHHHHhccCchhhHhhhhccCCCCCcc
Q psy336 87 PTQEM---LYELFTKEKYGEQIKKILVPQLGPQAKI 119 (121)
Q Consensus 87 ~~~e~---~~~~l~~~~~~~~l~~~L~~~lglg~~~ 119 (121)
++.+. ..+++.+ +.+ ++.++..||++...
T Consensus 6 lt~~q~~~a~~l~~~---G~s-~~~iA~~~gVSr~T 37 (47)
T d1ijwc_ 6 INKHEQEQISRLLEK---GHP-RQQLAIIFGIGVST 37 (47)
T ss_dssp SCHHHHHHHHHHHHT---TCC-HHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHHC---CCC-HHHHHHHHCcCHHH
Confidence 45554 4555544 443 45558888887653
No 9
>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987 {Bacteroides vulgatus [TaxId: 821]}
Probab=25.69 E-value=60 Score=19.58 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=31.1
Q ss_pred ccccCCCceeEEEec--CCCeEEEEEEccCCceEEEEEEeccCceEEEEcCC
Q psy336 2 RKHLKNKRLESLKLL--GLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKD 51 (121)
Q Consensus 2 Rk~l~g~ri~~i~Q~--~~DRIv~~~f~~~~~~~~L~~El~g~~Niil~d~~ 51 (121)
.+|..+++|.++++- .++......|..+ +. ++|...|+...++.+
T Consensus 21 ~~~fp~a~i~~ve~e~~~~~~~Y~V~~~ng---~e--~~F~~~G~w~~v~~~ 67 (126)
T d3duea1 21 KTHFPDNKVAMAKMETDWFDKSYDVIFTNG---DK--LEFDKKGIWTEVNCK 67 (126)
T ss_dssp HHHCTTCCEEEEEEEEETTEEEEEEEETTS---CE--EEECTTSCEEEEECT
T ss_pred HHHCCCCceEEEEEecCCccEEEEEEecCC---eE--EEEEcCCCEEEEccc
Confidence 467788999888775 3445556667665 22 677777999888744
No 10
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=23.28 E-value=24 Score=20.52 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.7
Q ss_pred eEEEEcCCCcEEEeecccc
Q psy336 44 NIVLTDKDYIILNVLRPHS 62 (121)
Q Consensus 44 Niil~d~~~~Il~~lr~~~ 62 (121)
-++++|.+|+|+.+.....
T Consensus 15 gvi~~D~~G~I~~~N~aa~ 33 (110)
T d1mzua_ 15 GAIQVDGSGVIHRYNRTES 33 (110)
T ss_dssp EEEEEETTCBEEEECHHHH
T ss_pred EEEEEcCCCCEEEeHHHHH
Confidence 4889999999999976554
No 11
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=21.85 E-value=70 Score=19.35 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=22.1
Q ss_pred cCCCceeEEEecCCCeEEEEEEccCCceEEEEEEeccCceEEEEc
Q psy336 5 LKNKRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTD 49 (121)
Q Consensus 5 l~g~ri~~i~Q~~~DRIv~~~f~~~~~~~~L~~El~g~~Niil~d 49 (121)
|.|.+|++|.-.| .-+.|+|+.+ .+++-|.--|-+.+.+
T Consensus 43 l~g~~i~~v~RrG--K~l~~~l~~~----~l~iHLgMtG~l~~~~ 81 (128)
T d1k82a2 43 LSDQPVLSVQRRA--KYLLLELPEG----WIIIHLGMSGSLRILP 81 (128)
T ss_dssp CCSEEBCEEEEET--TEEEEECSSC----EEEEECTTTCEEEEES
T ss_pred hhCCceehhhhee--eEEEEEcCCC----cEEEEeccceEEEEEe
Confidence 5666666666666 4556666543 4555543336666654
No 12
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]}
Probab=20.79 E-value=50 Score=19.96 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=18.8
Q ss_pred EEEeccCceEEEEcCCCcEEEeec
Q psy336 36 IVELYDRGNIVLTDKDYIILNVLR 59 (121)
Q Consensus 36 ~~El~g~~Niil~d~~~~Il~~lr 59 (121)
.+.|-..||++|.|.++.++++..
T Consensus 64 ~l~l~~dGnLvL~d~~g~~vWsS~ 87 (119)
T d1b2pa_ 64 RAVLQPDGVLVVITNENVTVWQSP 87 (119)
T ss_dssp EEEECTTSCEEEECTTCCEEEECS
T ss_pred EEEEEeCCCEEEECCCCcEEEECC
Confidence 456666699999999999988654
No 13
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.43 E-value=26 Score=21.08 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=13.0
Q ss_pred ceEEEEcCCCcEEEeec
Q psy336 43 GNIVLTDKDYIILNVLR 59 (121)
Q Consensus 43 ~Niil~d~~~~Il~~lr 59 (121)
.|++|+|++|.|-..+.
T Consensus 40 ~~~~l~De~G~I~~t~~ 56 (116)
T d1jmca1 40 FSLELVDESGEIRATAF 56 (116)
T ss_dssp EEEEEECSSCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEc
Confidence 47889999998655554
No 14
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.19 E-value=33 Score=21.01 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=19.3
Q ss_pred cCCCeEEEEEEccCCceEEEEEEeccC
Q psy336 16 LGLDRIIDLQFGTGEAEYHIIVELYDR 42 (121)
Q Consensus 16 ~~~DRIv~~~f~~~~~~~~L~~El~g~ 42 (121)
-|+=||+.+....+|..-.-++||.|.
T Consensus 75 GGYTRI~kl~~R~gD~A~ma~iElv~~ 101 (109)
T d2cqma1 75 GGYTRMLQIPNRSLDRAKMAVIEYKGN 101 (109)
T ss_dssp SCCEEEEEECCCSSSCCCEEEEEESSC
T ss_pred CCeEEEEecCCCCCCCCCeEEEEECCC
Confidence 377788888777666666677787764
No 15
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.14 E-value=37 Score=20.05 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=13.0
Q ss_pred ceEEEEcCCCcEEEee
Q psy336 43 GNIVLTDKDYIILNVL 58 (121)
Q Consensus 43 ~Niil~d~~~~Il~~l 58 (121)
..++|+|.+|+|+...
T Consensus 131 ~~~fLID~~G~vv~~~ 146 (169)
T d2b7ka1 131 IFFYLMDPEGQFVDAL 146 (169)
T ss_dssp CCEEEECTTSCEEEEE
T ss_pred ceEEEECCCCeEEEEE
Confidence 5689999999998654
Done!