RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy336
         (121 letters)



>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein
           structure initiative, midwest center for structural
           genomics; 2.81A {Staphylococcus aureus subsp}
          Length = 288

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 1   MRKHLKNKRLESLKLLGLDRIIDLQFGTGE-----AEYHIIVELYDR-GNIVLTDKDYII 54
            RKHL+   +ES+K +G DR I++   + +         +I+E+  +  N++L D++  I
Sbjct: 78  FRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKI 137

Query: 55  LNVLRPHSDGEE--VRFYVREKY--PVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKILV 110
           +   +  +              Y  P    K+     T   + +    +     I K L+
Sbjct: 138 IEGFKHLTPNTNHYRTVMPGFNYEAPPTQHKINPYDITGAEVLKYI--DFNAGNIAKQLL 195

Query: 111 PQL 113
            Q 
Sbjct: 196 NQF 198


>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
           hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
          Length = 437

 Score = 28.9 bits (64), Expect = 0.41
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 32  EYHIIVELYDRGNIVLTDKDYIILNV 57
           + HI++ L D G+  L     +++NV
Sbjct: 411 DIHILLTLRDNGSPNLYAYRRVVINV 436


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.51
 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 12/31 (38%)

Query: 99  EKYGEQIKKI---L-------VPQLGPQAKI 119
           EK  + +KK+   L        P L  +A +
Sbjct: 18  EK--QALKKLQASLKLYADDSAPALAIKATM 46



 Score = 27.2 bits (59), Expect = 0.96
 Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 3/17 (17%)

Query: 6  KN--KRLE-SLKLLGLD 19
          K   K+L+ SLKL   D
Sbjct: 19 KQALKKLQASLKLYADD 35


>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
           complex, schiff-base linkage, kynuren aminotransferase;
           HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
           3ath_A* 3av7_A* 1x0m_A 1wst_A*
          Length = 448

 Score = 25.7 bits (57), Expect = 4.3
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 63  DGEEVRFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKI 108
           D   +R     K   DL    +    Q + +         + I +I
Sbjct: 303 DPGIIRKMEIAKQSTDLC---TNVFGQVVAWRYVDGGYLEKHIPEI 345


>1tie_A Erythrina trypsin inhibitor; proteinase inhibitor (trypsin);
          2.50A {Erythrina caffra} SCOP: b.42.4.1
          Length = 172

 Score = 25.4 bits (55), Expect = 4.4
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 43 GNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRS 84
          G +V     Y +L  +     G ++     E  P+ + +  +
Sbjct: 7  GEVVQNGGTYYLLPQVWAQGGGVQLAKTGEETCPLTVVQSPN 48


>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
           {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
           PDB: 1ord_A*
          Length = 730

 Score = 25.8 bits (56), Expect = 4.6
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 32  EYHIIVELYDRGNIVL 47
           ++ II E  D  +I+ 
Sbjct: 526 DHGIIPEKSDLNSILF 541


>1eyl_A RWCI-3, chymotrypsin inhibitor; beta trefoil, hydrolase
          inhibitor; HET: SO4; 1.90A {Psophocarpus
          tetragonolobus} SCOP: b.42.4.1 PDB: 1fn0_A* 2beb_A
          2esu_A 1fmz_A* 2bea_A 2et2_A 4wbc_A* 1wbc_A 2wbc_A*
          1xg6_A 2qyi_B 3i29_B 3i2x_A 3i2a_A 3qyd_A
          Length = 186

 Score = 25.4 bits (55), Expect = 4.7
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 38 ELYD-RGNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRS 84
          +L D  GN+V     Y +L  +  H  G E      E  P+ + +  +
Sbjct: 6  DLVDAEGNLVENGGTYYLLPHIWAHGGGIETAKTGNEPCPLTVVRSPN 53


>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
           dependent decarboxylase, acid stress stringent response;
           HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
          Length = 715

 Score = 25.8 bits (56), Expect = 5.2
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 32  EYHIIVELYDRGNIVL 47
           E+ I+VE     N++ 
Sbjct: 520 EHGIVVEKTGPYNLLF 535


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 25.1 bits (54), Expect = 6.9
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 59  RPHSDGEEVRFYVREKYPVDLAKV-RSGAPTQEMLYELFTKE------KYGEQIKK 107
           R   + E +R + RE+    L ++  +    ++   E   K+      +  EQ++K
Sbjct: 79  RLTQEPESIRKW-REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.142    0.400 

Gapped
Lambda     K      H
   0.267   0.0693    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,942,208
Number of extensions: 115820
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 23
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)