RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy336
         (121 letters)



>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
           maritima [TaxId: 2336]}
          Length = 180

 Score = 25.9 bits (56), Expect = 1.2
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 10/102 (9%)

Query: 8   KRLESLKLLGLDRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKDYIILNVLRPHSDGEEV 67
            R + LK LG++ + DL             +  DR  I   +       V    + G+ V
Sbjct: 21  NRKKKLKKLGIETLRDLLE-------FFPRDYEDRRKIFKLNDLLPGEKV---TTQGKIV 70

Query: 68  RFYVREKYPVDLAKVRSGAPTQEMLYELFTKEKYGEQIKKIL 109
               ++   +++           +  + F ++     +K++ 
Sbjct: 71  SVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLT 112


>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870
           {Leishmania major [TaxId: 5664]}
          Length = 157

 Score = 25.7 bits (56), Expect = 1.3
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 19  DRIIDLQFGTGEAEYHIIVELYDRGNIVLTDKD------YIILNVLRPHSDGEEVRFYVR 72
           D+++     T E     + E+        T  D             +      +V+F  R
Sbjct: 49  DKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVAR 108

Query: 73  EKYPVDLAKVRSGAPTQEML 92
               + L +++S    Q+M 
Sbjct: 109 WDTVLTLHELKSRRELQKMA 128


>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 34

 Score = 23.6 bits (51), Expect = 1.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 39 LYDRGNIVLTDKDYIIL 55
           Y +  ++L   DYI L
Sbjct: 16 SYTKSGMILCRNDYIRL 32


>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium
          botulinum, serotype B [TaxId: 1491]}
          Length = 211

 Score = 24.5 bits (53), Expect = 3.4
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 43 GNIVLTDKDYIILNVLRP 60
          GN ++ +K+Y + N    
Sbjct: 9  GNPLMYNKEYYMFNAGNK 26


>d1a8da2 b.42.4.2 (A:248-452) Tetanus neurotoxin {Clostridium
          tetani [TaxId: 1513]}
          Length = 205

 Score = 24.5 bits (53), Expect = 3.6
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 43 GNIVLTDKDYIILNVLRPHSD 63
          GN +  D +Y ++ V     D
Sbjct: 9  GNPLRYDTEYYLIPVASSSKD 29


>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 103

 Score = 24.1 bits (52), Expect = 3.7
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 46  VLTDKDYIILNVLRPHSDGEEVRFYVREKYP 76
           +L D +  +       SD   + F ++ + P
Sbjct: 73  ILDDDECPLQIFREWPSDKGILVFQLKRRPP 103


>d1eyla_ b.42.4.1 (A:) chymotrypsin inhibitor WCI {Winged bean
          (Psophocarpus tetragonolobus) [TaxId: 3891]}
          Length = 179

 Score = 24.1 bits (52), Expect = 4.4
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 43 GNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRS 84
          GN+V     Y +L  +  H  G E      E  P+ + +  +
Sbjct: 11 GNLVENGGTYYLLPHIWAHGGGIETAKTGNEPCPLTVVRSPN 52


>d1tiea_ b.42.4.1 (A:) Erythrina cafra trypsin inhibitor
          {Erythrina caffra [TaxId: 3842]}
          Length = 170

 Score = 23.7 bits (51), Expect = 6.2
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 43 GNIVLTDKDYIILNVLRPHSDGEEVRFYVREKYPVDLAKVRS 84
          G +V     Y +L  +     G ++     E  P+ + +  +
Sbjct: 7  GEVVQNGGTYYLLPQVWAQGGGVQLAKTGEETCPLTVVQSPN 48


>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
          Length = 346

 Score = 24.1 bits (51), Expect = 6.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 1   MRKHLKNKRLESLKLLGLDRI 21
            RK+++    +SLK L  D +
Sbjct: 106 DRKNIREALHDSLKRLQTDYL 126


>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 33

 Score = 22.1 bits (47), Expect = 6.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 39 LYDRGNIVLTDKDYIIL 55
          LY +    L  +DY+ L
Sbjct: 17 LYYKLGRKLCRRDYLRL 33


>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium
          botulinum, serotype A [TaxId: 1491]}
          Length = 217

 Score = 23.7 bits (51), Expect = 6.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 43 GNIVLTDKDYIILNVLRPHSD 63
          G+ +  DK Y +LN+  P+  
Sbjct: 23 GDYLQYDKPYYMLNLYDPNKY 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.142    0.400 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 467,745
Number of extensions: 21605
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 15
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)