BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3362
(550 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera]
Length = 1290
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 280/382 (73%), Positives = 331/382 (86%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 875 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 934
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+KD E K W+ YP+HPLQEQE
Sbjct: 935 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYPKHPLQEQE 994
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 995 PTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1054
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1055 DTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1114
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1115 TKDRADLLEAFLGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1174
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K
Sbjct: 1175 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1234
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1235 QDLFPQLDHQKRVIAKSMKMQQ 1256
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F R+ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 833 RRIHYMNTRKRGINTLINIMSR-FGARTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 889
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 890 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEA 949
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+G++++D G+E ++ F + L + W N PK LQ+
Sbjct: 950 LMGSLFLDGGIEVADRVFGETLFKDEE--DLAKVWVNYPKHPLQE 992
>gi|380030082|ref|XP_003698687.1| PREDICTED: ribonuclease 3-like [Apis florea]
Length = 1290
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 280/382 (73%), Positives = 331/382 (86%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 875 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 934
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+KD E K W+ YP+HPLQEQE
Sbjct: 935 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYPKHPLQEQE 994
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 995 PTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1054
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1055 DTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1114
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1115 TKDRADLLEAFLGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1174
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K
Sbjct: 1175 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1234
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1235 QDLFPQLDHQKRVIAKSMKMQQ 1256
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F R+ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 833 RRIHYMNTRKRGINTLINIMSR-FGARTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 889
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 890 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEA 949
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+G++++D G+E ++ F + L + W N PK LQ+
Sbjct: 950 LMGSLFLDGGIEVADRVFGETLFKDEE--DLAKVWVNYPKHPLQE 992
>gi|383848560|ref|XP_003699917.1| PREDICTED: ribonuclease 3-like [Megachile rotundata]
Length = 1286
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/382 (73%), Positives = 331/382 (86%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 871 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 930
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+KD + K W+ YP+HPLQEQE
Sbjct: 931 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEDDLAKVWVNYPKHPLQEQE 990
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 991 PTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1050
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1051 DTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1110
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1111 TKDRADLLEAFLGALYVDKGLEYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1170
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K
Sbjct: 1171 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1230
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1231 QDLFPQLDHQKRVIAKSMKMQQ 1252
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F R+ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 829 RRIHYMNTRKRGINTLINIMSR-FGARTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 885
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 886 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEA 945
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+G++++D G+E ++ F L + W N PK LQ+
Sbjct: 946 LMGSLFLDGGIEVADRVFGETLFKDED--DLAKVWVNYPKHPLQE 988
>gi|350416128|ref|XP_003490851.1| PREDICTED: ribonuclease 3-like [Bombus impatiens]
Length = 1306
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 279/382 (73%), Positives = 331/382 (86%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 891 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 950
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+K E K W+ YP+HPLQEQE
Sbjct: 951 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKTEEDLGKVWVNYPKHPLQEQE 1010
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G++F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 1011 PTGDRQWIPSFELLQKLTKFEESIGIVFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1070
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1071 DTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1130
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1131 TKDRADLLEAFLGALYVDKGLEFCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1190
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K
Sbjct: 1191 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1250
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1251 QDLFPQLDHQKRVIAKSMKMQQ 1272
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F R+ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 849 RRIHYMNTRKRGINTLINIMSR-FGARTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 905
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 906 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEA 965
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+G++++D G+E ++ F + L + W N PK LQ+
Sbjct: 966 LMGSLFLDGGIEVADRVFGETLFKTEE--DLGKVWVNYPKHPLQE 1008
>gi|340711421|ref|XP_003394274.1| PREDICTED: ribonuclease 3-like [Bombus terrestris]
Length = 1306
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/382 (73%), Positives = 331/382 (86%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 891 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 950
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+K E K W+ YP+HPLQEQE
Sbjct: 951 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKAEEDLGKVWVNYPKHPLQEQE 1010
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G++F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 1011 PTGDRQWIPSFELLQKLTKFEESIGIVFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1070
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1071 DTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1130
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1131 TKDRADLLEAFLGALYVDKGLEFCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1190
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K
Sbjct: 1191 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1250
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1251 QDLFPQLDHQKRVIAKSMKMQQ 1272
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F R+ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 849 RRIHYMNTRKRGINTLINIMSR-FGARTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 905
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 906 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEA 965
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+G++++D G+E ++ F + L + W N PK LQ+
Sbjct: 966 LMGSLFLDGGIEVADRVFGETLFKAEE--DLGKVWVNYPKHPLQE 1008
>gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior]
Length = 1326
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/382 (72%), Positives = 329/382 (86%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 901 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 960
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+K E K W+ YP+HPLQEQE
Sbjct: 961 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYPRHPLQEQE 1020
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 1021 PTGDRQWISSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1080
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1081 DTVLQLIVSEYLYKYFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1140
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG++ C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1141 TKDRADLLEAFLGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1200
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLA A+G+SIQ+AEMN+AK AL+K
Sbjct: 1201 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEKS 1260
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1261 QDLFPQLDHQKRVIAKSMKMQQ 1282
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T ++ N+RLEFLGD V++ +TS +L++ FP+ EG L+ R+++V N+ +V+ +
Sbjct: 887 TESSIAHNERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLN 946
Query: 318 MP---FFANIINPKVDLKMKDR-ADLLEAFLGAMYIDKGMEACEQ 358
+ +A+ + DL+++ A+ EA +G++++D G+E ++
Sbjct: 947 LEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADR 991
>gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator]
Length = 1328
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/382 (73%), Positives = 329/382 (86%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 906 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 965
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+KD E K W+ YP+HPLQEQE
Sbjct: 966 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDEEDLAKVWVNYPRHPLQEQE 1025
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 1026 PMGDRQWIPSFELLQKLTKFEESIGIKFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1085
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1086 DTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1145
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG + C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1146 TKDRADLLEAFLGALYVDKGFKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1205
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K
Sbjct: 1206 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1265
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1266 QDLFPQLDHQKRVIAKSMKMQQ 1287
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F R+ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 864 RRIHYMNTRKRGINTLINIMSR-FGARTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 920
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 921 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEA 980
Query: 343 FLGAMYIDKGMEACEQ 358
+G++++D G+E ++
Sbjct: 981 LMGSLFLDGGIEVADR 996
>gi|345483564|ref|XP_001601748.2| PREDICTED: ribonuclease 3-like [Nasonia vitripennis]
Length = 1423
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 276/381 (72%), Positives = 324/381 (85%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE +MLYAHGSDLC
Sbjct: 884 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEQYMLYAHGSDLC 943
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMGALFLDGGI +AD VF L+K+ W+ YP+HPLQEQE
Sbjct: 944 HDLELRHAMANCFEALMGALFLDGGIRIADTVFGETLFKNESDLLNIWVNYPKHPLQEQE 1003
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E GV F+HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 1004 PTGDRQWIPSFELLQKLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1063
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1064 DTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1123
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ C+ FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1124 TKDRADLLEAFLGALYVDKGLLHCQVFCNVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1183
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLAKA+G+SIQ+AEMN+AK AL+K
Sbjct: 1184 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEKS 1243
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKS+++Q
Sbjct: 1244 QDLFPQLDHQKRVIAKSMKMQ 1264
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R + T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 842 RRIHYMNTRKRGINTLINIMSRFGAKKE---TESSIAHNERLEFLGDAVVEFLTSIHLFH 898
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 899 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLNLEQYMLYAHGSDLCHDLELRHAMANCFEA 958
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+++D G+ + F + + +LN N PK LQ+
Sbjct: 959 LMGALFLDGGIRIADTVFGETLF-KNESDLLNIWVNYPKHPLQE 1001
>gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis]
gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis]
Length = 1410
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/396 (70%), Positives = 329/396 (83%), Gaps = 7/396 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FITSIHLFH+F D+EEGGLATYRAA+VQNQHL+ LAK++ L++FMLYAHGSDLC
Sbjct: 1015 GDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHLSVLAKKLNLDEFMLYAHGSDLC 1074
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++ELKHAMANCFEALMGALFLDGGI+ AD+VF LY D+E W YP HPLQEQE
Sbjct: 1075 HDLELKHAMANCFEALMGALFLDGGIESADKVFGMTLYGDDEDCSDVWFNYPPHPLQEQE 1134
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+W+ PLL+ L E ++G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 1135 PLGDRKWISHFPLLQNLTKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLG 1194
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
D+VLQLI S+YLY +FPEHHEGHLSLLRSSLVNN+TQSVVC+D+GM +A NPKV+LK
Sbjct: 1195 DSVLQLIASEYLYKYFPEHHEGHLSLLRSSLVNNKTQSVVCDDLGMTQYAVYANPKVELK 1254
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
+KDRADLLEAFLGA+Y+D G++ C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1255 VKDRADLLEAFLGALYVDNGLDICRVFCDVCFFPRLQIFIMNQDWNDPKSKLQQCCLTLR 1314
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+D EPDIPIYKV+E GPTN+R YTVAVYF+N+RLAKATG+SIQQAEMNAA+ A++
Sbjct: 1315 TMDNVEPDIPIYKVVECKGPTNTRVYTVAVYFRNKRLAKATGHSIQQAEMNAAQKAMEVS 1374
Query: 453 PSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCW 488
+ PQLDHQKRVIAKS++ QK W + S W
Sbjct: 1375 GPLFPQLDHQKRVIAKSLKTQK-------WPNRSSW 1403
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F ++ +N+ N+RLEFLGD V++ ITS +L++
Sbjct: 973 RRIHYMNTRKRGINTLISIMSR-FGRKNETQSNIY--HNERLEFLGDAVVEFITSIHLFH 1029
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
F + EG L+ R++LV N+ SV+ + + +A+ + DL++K A+ EA
Sbjct: 1030 IFRDLEEGGLATYRAALVQNQHLSVLAKKLNLDEFMLYAHGSDLCHDLELKHAMANCFEA 1089
Query: 343 FLGAMYIDKGMEACEQ 358
+GA+++D G+E+ ++
Sbjct: 1090 LMGALFLDGGIESADK 1105
>gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta]
Length = 1447
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 276/382 (72%), Positives = 328/382 (85%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FP++EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 855 GDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLC 914
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+K E K W+ YP+HPLQEQE
Sbjct: 915 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGEEDLAKVWVNYPRHPLQEQE 974
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 975 PTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1034
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1035 DTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1094
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG++ C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1095 TKDRADLLEAFLGALYVDKGLKYCHIFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1154
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLA A+G+SIQ+AEMN+AK AL+K
Sbjct: 1155 TMDGGEPDIPVYKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEKS 1214
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIAKS+++Q+
Sbjct: 1215 QDLFPQLDHQKRVIAKSMKMQQ 1236
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F ++ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 813 RRIHYMNTRKRGINTLINIMSR-FGAKTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 869
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 870 MFPELEEGGLATYRAAIVQNQHLAVLAKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEA 929
Query: 343 FLGAMYIDKGMEACEQ 358
+G++++D G+E ++
Sbjct: 930 LMGSLFLDGGIEVADR 945
>gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi]
Length = 1254
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 282/399 (70%), Positives = 330/399 (82%), Gaps = 1/399 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FITSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 641 GDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLC 700
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQEQ 211
HE+EL+HA+ANCFEALMGAL LDGGI VAD+VF+ L+ +E + + W YP+HPLQEQ
Sbjct: 701 HELELRHALANCFEALMGALLLDGGIAVADRVFAYALFGPDEPKLHEIWTNYPRHPLQEQ 760
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
EP+GDR +E +LK L E S GV F+HIRLLAR FT RSMG+TNLTLGSNQRLEFL
Sbjct: 761 EPNGDRHHIESFEMLKTLTRFEDSIGVKFSHIRLLARAFTDRSMGFTNLTLGSNQRLEFL 820
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GDTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK +L
Sbjct: 821 GDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNPKAEL 880
Query: 332 KMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL 391
K KDRADLLEAFLGA+Y+DKG+ CE+FC+VC FPRLQ FI+NQ+WNDPKSKLQQCCLTL
Sbjct: 881 KTKDRADLLEAFLGALYVDKGLVYCEKFCQVCLFPRLQDFIMNQDWNDPKSKLQQCCLTL 940
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
RT+DGGEPDIP+YKVIE GPTN+R Y+VAVYF+ +RLA A G+SIQQAEMNAA+ AL+K
Sbjct: 941 RTMDGGEPDIPLYKVIECTGPTNTRVYSVAVYFRGKRLACANGHSIQQAEMNAARQALEK 1000
Query: 452 CPSICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVG 490
+ PQLDHQKRVIA+S+ QK G S + G
Sbjct: 1001 SKDLFPQLDHQKRVIAQSLRRQKMPRPPGTGGSVTQMKG 1039
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F +N+T N+RLEFLGD V++ ITS +L++
Sbjct: 599 RKIHYMNTRKRGINTLISIMSR-FGKEHETDSNIT--HNERLEFLGDAVVEFITSIHLFH 655
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + +L+++ A+ EA
Sbjct: 656 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLCHELELRHALANCFEA 715
Query: 343 FLGAMYIDKGMEACEQ-FCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+GA+ +D G+ ++ F F P L++ W N P+ LQ+
Sbjct: 716 LMGALLLDGGIAVADRVFAYALFGP--DEPKLHEIWTNYPRHPLQE 759
>gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST]
gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST]
Length = 1404
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/382 (72%), Positives = 325/382 (85%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FITSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 814 GDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLC 873
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HA+ANCFEALMGAL LDGGI+VAD+VF+ L+++++ W+ YP HPLQEQE
Sbjct: 874 HELELRHALANCFEALMGALLLDGGIEVADRVFAYALFQEDDTLRGIWVNYPSHPLQEQE 933
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK L E S GV FNHIRLLAR FT RS+G+TNLTLGSNQRLEFLG
Sbjct: 934 PLGDRHHIDSFEMLKTLTRFEDSIGVQFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLG 993
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK DLK
Sbjct: 994 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNPKADLK 1053
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E CE FC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1054 TKDRADLLEAFLGALYVDKGLEYCEMFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1113
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R Y+VAVYF+ +RLA A G+SIQQAEMNAAK AL+
Sbjct: 1114 TMDGGEPDIPVYKVIECTGPTNTRVYSVAVYFRGKRLACADGHSIQQAEMNAAKQALENS 1173
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQ+RVIA+S++ QK
Sbjct: 1174 KDLFPQLDHQRRVIAQSLKRQK 1195
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F +N+T N+RLEFLGD V++ ITS +L++
Sbjct: 772 RKIHYMNTRKRGINTLISIMSR-FGKEHETDSNIT--HNERLEFLGDAVVEFITSIHLFH 828
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + F A+ + +L+++ A+ EA
Sbjct: 829 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLCHELELRHALANCFEA 888
Query: 343 FLGAMYIDKGMEACEQFCKVCFF 365
+GA+ +D G+E ++ F
Sbjct: 889 LMGALLLDGGIEVADRVFAYALF 911
>gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum]
Length = 1273
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 273/385 (70%), Positives = 325/385 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF++FPDIEEGGLAT+RAAIVQNQHLA LAK + L+DFMLYAHGSDLC
Sbjct: 829 GDAVVEFVSSIHLFNMFPDIEEGGLATFRAAIVQNQHLAVLAKTLKLDDFMLYAHGSDLC 888
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H+ ELKHAMANCFEALMGALFLDGGI+VAD+VF Y+D+ W+ YP+HPLQ+QE
Sbjct: 889 HDSELKHAMANCFEALMGALFLDGGIEVADRVFGKTFYRDSPEYLDIWVNYPRHPLQQQE 948
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+GDR+W+++ PLL++L E S G+ F HIRLLAR FT RS+G+TNLTLGSNQRLEFLG
Sbjct: 949 PEGDRKWIKKLPLLQKLTNFEDSIGIKFTHIRLLARAFTDRSVGFTNLTLGSNQRLEFLG 1008
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI SDYLY +FPEHHEGHLSLLRSSLVNNRTQSVVC+D+GM +A NPK +LK
Sbjct: 1009 DTVLQLIASDYLYKYFPEHHEGHLSLLRSSLVNNRTQSVVCDDLGMVSYALYANPKAELK 1068
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+YIDKG+ C+ FC VCFFPRL FIL Q+WNDPKSKLQQCCLTLR
Sbjct: 1069 TKDRADLLEAFLGALYIDKGLTFCQAFCNVCFFPRLHDFILKQDWNDPKSKLQQCCLTLR 1128
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
++DGGEPDIP+YKVIE +GPTN R YTVAVYFK+ RL++ATG+SIQ+AEMNAA AL+
Sbjct: 1129 SVDGGEPDIPVYKVIECMGPTNGRKYTVAVYFKSVRLSQATGHSIQRAEMNAANSALEVS 1188
Query: 453 PSICPQLDHQKRVIAKSIELQKHEG 477
+ PQLDHQ+R I++S+ Q +G
Sbjct: 1189 KDLFPQLDHQRRAISRSLRHQCSDG 1213
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 12/166 (7%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F +S +N+ N+RLEFLGD V++ ++S +L+N
Sbjct: 787 RRIHYMNTRKRGINTLINIMSR-FGKKSEMESNIM--HNERLEFLGDAVVEFVSSIHLFN 843
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + D ++K A+ EA
Sbjct: 844 MFPDIEEGGLATFRAAIVQNQHLAVLAKTLKLDDFMLYAHGSDLCHDSELKHAMANCFEA 903
Query: 343 FLGAMYIDKGMEACEQ-FCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+GA+++D G+E ++ F K + +Y + W N P+ LQQ
Sbjct: 904 LMGALFLDGGIEVADRVFGKTFYRDSPEYLDI---WVNYPRHPLQQ 946
>gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti]
gi|108875392|gb|EAT39617.1| AAEL008592-PA [Aedes aegypti]
Length = 1374
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/382 (72%), Positives = 322/382 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FITSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK + LE+FMLYAHGSDLC
Sbjct: 809 GDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKTLHLEEFMLYAHGSDLC 868
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HA+ANCFEALMGAL LDGGI+ AD+VF+ L++++ W+ YP HPLQEQE
Sbjct: 869 HELELRHALANCFEALMGALLLDGGIETADRVFAYALFQEDTNLRNIWVNYPPHPLQEQE 928
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +E +LK L E + GV FNHIRLLAR FT RS+G+TNLTLGSNQRLEFLG
Sbjct: 929 PLGDRHHIESFEMLKTLTKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLG 988
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK DLK
Sbjct: 989 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTTYAVYSNPKADLK 1048
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E CE FC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1049 TKDRADLLEAFLGALYVDKGLEHCETFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1108
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIPIYKVIE GPTN+R YTVAVYF+ +RLA + G+SIQQAEMNAAK AL+
Sbjct: 1109 TMDGGEPDIPIYKVIECNGPTNTRVYTVAVYFRGKRLACSNGHSIQQAEMNAAKKALENS 1168
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLDHQKRVIA+S++ Q+
Sbjct: 1169 KDLFPQLDHQKRVIAQSLKRQR 1190
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T+ + N+RLEFLGD V++ ITS +L++ FP+ EG L+ R+++V N+ +V+ +
Sbjct: 795 TDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKTLH 854
Query: 318 MPFF---ANIINPKVDLKMKDR-ADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
+ F A+ + +L+++ A+ EA +GA+ +D G+E ++ F
Sbjct: 855 LEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDGGIETADRVFAYALF 906
>gi|425626944|gb|AFX89030.1| drosha [Mayetiola destructor]
Length = 1373
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/382 (71%), Positives = 315/382 (82%), Gaps = 15/382 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLF +FPD+EEGGLATYRAAIVQNQHLA LAK++ L++FMLYAHGSDLC
Sbjct: 881 GDAVVEFLTSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVLAKKLRLDEFMLYAHGSDLC 940
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGIDVAD++ W+ YP HPLQEQE
Sbjct: 941 HELELRHAMANCFEALMGALLLDGGIDVADKI---------------WINYPPHPLQEQE 985
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+E PLLK L E S G+ F HIRLLAR FT RS+G+TNLTLGSNQRLEFLG
Sbjct: 986 PLGDRQWIESYPLLKDLTKFEESVGISFKHIRLLARAFTDRSIGFTNLTLGSNQRLEFLG 1045
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK +LK
Sbjct: 1046 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAIYSNPKNELK 1105
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLG++Y+DKG+ E FC+VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1106 TKDRADLLEAFLGSLYVDKGLLFAETFCQVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1165
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIPIYKVIE GPTN+R Y VAVYF+ +RLA +TG+SIQQAEM AAK AL+
Sbjct: 1166 TMDGGEPDIPIYKVIECTGPTNTRVYKVAVYFRGKRLASSTGHSIQQAEMEAAKKALENS 1225
Query: 453 PSICPQLDHQKRVIAKSIELQK 474
+ PQLD+QKRV+A SI+ Q+
Sbjct: 1226 CELFPQLDYQKRVMAHSIKRQR 1247
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 77/136 (56%), Gaps = 7/136 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ YL I I +++R F +N+T N+RLEFLGD V++ +TS +L+
Sbjct: 839 RKIHYLNTRKRGINTLINIMSR-FGKEDETDSNIT--HNERLEFLGDAVVEFLTSIHLFF 895
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + F A+ + +L+++ A+ EA
Sbjct: 896 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLRLDEFMLYAHGSDLCHELELRHAMANCFEA 955
Query: 343 FLGAMYIDKGMEACEQ 358
+GA+ +D G++ ++
Sbjct: 956 LMGALLLDGGIDVADK 971
>gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex]
Length = 939
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/375 (71%), Positives = 318/375 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+ SIHL+H+FPD+EEGGLATYRAAIVQNQHLA LAK + L+ FMLYAHGSDLC
Sbjct: 565 GDAVVEFLASIHLYHMFPDLEEGGLATYRAAIVQNQHLAQLAKNLQLDQFMLYAHGSDLC 624
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMGALFLDGGI+VAD+VFS+ L+ + + W+ YP HPLQEQE
Sbjct: 625 HDLELRHAMANCFEALMGALFLDGGINVADRVFSNTLFMNEKDLLDVWVNYPSHPLQEQE 684
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
GDR+W+ PLL+++ E S G+ F HIRLLAR FT RS+G+ NLTLGSNQRLEFLG
Sbjct: 685 LGGDRKWIASFPLLQKMVEFEESIGIKFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLG 744
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY FPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A +PK +LK
Sbjct: 745 DTVLQLIASEYLYKFFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALYSSPKAELK 804
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+E C+ FC+VCFFPRLQ FIL+Q+WNDPKSKLQQCCLTLR
Sbjct: 805 TKDRADLLEAFLGALYVDKGLEDCQTFCQVCFFPRLQDFILHQDWNDPKSKLQQCCLTLR 864
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP+YKVIE GPTN+R Y+VAVYF+ RLA A+G+SIQQAEMNAAK AL+K
Sbjct: 865 TMDGGEPDIPVYKVIECKGPTNTRVYSVAVYFRGIRLASASGHSIQQAEMNAAKEALEKS 924
Query: 453 PSICPQLDHQKRVIA 467
+ PQL+HQK+VIA
Sbjct: 925 KDLFPQLNHQKKVIA 939
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R+ + T ++ N+RLEFLGD V++ + S +LY+
Sbjct: 523 RRIHYMNTRKRGINTLINIMSRLGKKQE---TESSITHNERLEFLGDAVVEFLASIHLYH 579
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ + + ++ + +A+ + DL+++ A+ EA
Sbjct: 580 MFPDLEEGGLATYRAAIVQNQHLAQLAKNLQLDQFMLYAHGSDLCHDLELRHAMANCFEA 639
Query: 343 FLGAMYIDKGMEACEQFCKVCFF 365
+GA+++D G+ ++ F
Sbjct: 640 LMGALFLDGGINVADRVFSNTLF 662
>gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis]
gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis]
Length = 1306
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/381 (72%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 820 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 879
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E K W P+HPLQEQE
Sbjct: 880 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLKIWKNLPEHPLQEQE 939
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 940 PLGDRSCIDSYRVLKDLTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 999
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1000 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1059
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1060 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1119
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA A+G+SIQQAEMNAAK AL+
Sbjct: 1120 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALENS 1179
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1180 RDLFPQLDHQKRVIAKSIKKQ 1200
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 778 RKIHYMNTRKRGINTLVSIMSR-FGKDHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 834
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + +A+ + +L+++ A+ EA
Sbjct: 835 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 894
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L N P+ LQ+
Sbjct: 895 LMGALLLDGGIKVADEVFTDALF-RQDEKLLKIWKNLPEHPLQE 937
>gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi]
gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi]
Length = 1324
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/381 (71%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 831 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 890
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ ++ K W P+HPLQEQE
Sbjct: 891 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDDKLLKIWKNLPEHPLQEQE 950
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 951 PLGDRSCIDSYRVLKDLTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1010
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1011 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYAVYANPKADLK 1070
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1071 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1130
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA A+G+SIQQAEMNAAK AL+
Sbjct: 1131 TMDGGEPDIPYYKVVEATGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALENS 1190
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1191 RDLFPQLDHQKRVIAKSIKKQ 1211
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 789 RKIHYMNTRKRGINTLVSIMSR-FGKDHETLSNIT--HNERLEFLGDAVVEFLSSIHLFF 845
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + +A+ + +L+++ A+ EA
Sbjct: 846 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 905
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L N P+ LQ+
Sbjct: 906 LMGALLLDGGIKVADEVFTDALF-RQDDKLLKIWKNLPEHPLQE 948
>gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia]
gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia]
Length = 1310
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/381 (71%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 823 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 882
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 883 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 942
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 943 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1002
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP FA NPK DLK
Sbjct: 1003 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVYANPKADLK 1062
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1063 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1122
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 1123 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1182
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1183 RDLFPQLDHQKRVIAKSIKKQ 1203
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 781 RKIHYMNTRKRGINTLVSIMSR-FGKDQETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 837
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 838 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 897
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L+ N P+ LQ+
Sbjct: 898 LMGALLLDGGIKVADEVFTDALF-RQDEKLLSIWKNLPEHPLQE 940
>gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster]
Length = 1071
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/381 (71%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 583 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 642
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 643 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 702
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 703 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 762
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 763 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 822
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 823 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 882
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 883 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 942
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 943 RDLFPQLDHQKRVIAKSIKKQ 963
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 541 RKIHYMNTRKRGINTLVSIMSR-FGKEHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 597
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + +A+ + +L+++ A+ EA
Sbjct: 598 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 657
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L+ N P+ LQ+
Sbjct: 658 LMGALLLDGGIKVADEVFTDALF-RQDEKLLSIWKNLPEHPLQE 700
>gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta]
gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta]
Length = 1329
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/381 (71%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 838 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 897
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 898 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 957
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 958 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1017
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1018 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1077
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1078 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1137
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 1138 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1197
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1198 RDLFPQLDHQKRVIAKSIKKQ 1218
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 796 RKIHYMNTRKRGINTLVSIMSR-FGKDHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 852
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 853 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 912
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L+ N P+ LQ+
Sbjct: 913 LMGALLLDGGIKVADEVFTDALF-RQDEKLLSIWKNLPEHPLQE 955
>gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba]
gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba]
Length = 1328
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/381 (71%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 839 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 898
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 899 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 958
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 959 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1018
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1019 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1078
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1079 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1138
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 1139 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1198
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1199 RDLFPQLDHQKRVIAKSIKKQ 1219
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 797 RKIHYMNTRKRGINTLVSIMSR-FGKDHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 853
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 854 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 913
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L+ N P+ LQ+
Sbjct: 914 LMGALLLDGGIKVADEVFTDALF-RQDEKLLSIWKNLPEHPLQE 956
>gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis]
gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis]
Length = 1297
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/381 (71%), Positives = 320/381 (83%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 799 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 858
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ ++ W P+HPLQEQE
Sbjct: 859 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDDKLLAIWKNLPEHPLQEQE 918
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 919 PLGDRSCIDAYRVLKDLTRFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 978
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP FA NPK DLK
Sbjct: 979 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVYANPKADLK 1038
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1039 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1098
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA A+G+SIQQAEMNAAK AL+
Sbjct: 1099 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALENS 1158
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1159 RDLFPQLDHQKRVIAKSIKKQ 1179
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 757 RKIHYMNTRKRGINTLVSIMSR-FGKDHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 813
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + +A+ + +L+++ A+ EA
Sbjct: 814 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 873
Query: 343 FLGAMYIDKGMEACEQFCKVCFF 365
+GA+ +D G++ ++ F
Sbjct: 874 LMGALLLDGGIKVADEVFTDALF 896
>gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster]
gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster]
gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster]
gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster]
Length = 1327
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/381 (71%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 839 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 898
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 899 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 958
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 959 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1018
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1019 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1078
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1079 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1138
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 1139 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1198
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1199 RDLFPQLDHQKRVIAKSIKKQ 1219
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 797 RKIHYMNTRKRGINTLVSIMSR-FGKEHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 853
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 854 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 913
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L+ N P+ LQ+
Sbjct: 914 LMGALLLDGGIKVADEVFTDALF-RQDEKLLSIWKNLPEHPLQE 956
>gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans]
gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans]
Length = 1310
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/381 (71%), Positives = 321/381 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 823 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 882
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 883 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 942
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 943 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1002
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1003 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1062
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1063 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1122
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 1123 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1182
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1183 RDLFPQLDHQKRVIAKSIKKQ 1203
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 781 RKIHYMNTRKRGINTLVSIMSR-FGKDQETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 837
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 838 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 897
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +L+ N P+ LQ+
Sbjct: 898 LMGALLLDGGIKVADEVFTDALF-RQDEKLLSIWKNLPEHPLQE 940
>gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni]
gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni]
Length = 1320
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/381 (71%), Positives = 320/381 (83%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 825 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 884
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ E W P+HPLQEQE
Sbjct: 885 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQEEKLLNIWKNLPEHPLQEQE 944
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 945 PLGDRSCIDSYRVLKELTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1004
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1005 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1064
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLG++Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1065 TKDRADLLEAFLGSLYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1124
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 1125 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1184
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1185 RDLFPQLDHQKRVIAKSIKKQ 1205
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 783 RKIHYMNTRKRGINTLVSIMSR-FGKDHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 839
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + +A+ + +L+++ A+ EA
Sbjct: 840 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 899
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R + +LN N P+ LQ+
Sbjct: 900 LMGALLLDGGIKVADEVFTDALF-RQEEKLLNIWKNLPEHPLQE 942
>gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae]
gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae]
Length = 1303
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/381 (71%), Positives = 320/381 (83%), Gaps = 3/381 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 819 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 878
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 879 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLNIWKNLPEHPLQEQE 938
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +E +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 939 PLGDRGCIESYRVLKELTKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 998
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 999 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYA---NPKADLK 1055
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1056 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1115
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA + G+SIQQAEMNAAK AL+
Sbjct: 1116 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSNGSSIQQAEMNAAKQALENS 1175
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1176 RDLFPQLDHQKRVIAKSIKKQ 1196
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 777 RKIHYMNTRKRGINTLVSIMSR-FGKDHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 833
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 834 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 893
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R +LN N P+ LQ+
Sbjct: 894 LMGALLLDGGIKVADEVFTDALF-RQDEKLLNIWKNLPEHPLQE 936
>gi|427780811|gb|JAA55857.1| Putative ribonuclease [Rhipicephalus pulchellus]
Length = 886
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/379 (68%), Positives = 317/379 (83%), Gaps = 1/379 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FPD+EEGGLATYRAAIVQNQHLA LAK++ LE +MLYAHGSDLC
Sbjct: 440 GDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVLAKKLELEKYMLYAHGSDLC 499
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMGALFLD GI VAD+VFSS L+ + ++R W+ YP HPLQEQ
Sbjct: 500 HDLELRHAMANCFEALMGALFLDSGIKVADRVFSSTLFSEPDLR-DVWINYPPHPLQEQV 558
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+GDR+W+ PLLK+L E +G+ FNHIRLLA+ FT RS+G+ NLTLGSNQRLEFLG
Sbjct: 559 PEGDRKWISTVPLLKKLNEFEQLTGIEFNHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLG 618
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQL+ S+YLY +FPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM F K +LK
Sbjct: 619 DTVLQLVASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMVDFTIYPYAKAELK 678
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRAD+LEAFLGA+++DKG+E C FC+VCFFPRLQ FILNQ+WNDPKSKLQQCCLTLR
Sbjct: 679 TKDRADILEAFLGALFVDKGLEYCNVFCQVCFFPRLQDFILNQDWNDPKSKLQQCCLTLR 738
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
++DGGEPDIP+YKVIE GPTN+R YTVAVYF+ +RLA +G+SIQQAEM AA AL+
Sbjct: 739 SMDGGEPDIPMYKVIECKGPTNTRVYTVAVYFRRKRLATGSGHSIQQAEMAAASKALEAS 798
Query: 453 PSICPQLDHQKRVIAKSIE 471
+ PQL HQ+RV+ +S++
Sbjct: 799 KELFPQLSHQRRVLERSLK 817
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ YL I I +++R T ++G N+RLEFLGD V++ ++S +L+
Sbjct: 398 RRIHYLNTRKRGINTLINIMSRFGRQEE---TASSIGHNERLEFLGDAVVEFLSSIHLFF 454
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 455 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLELEKYMLYAHGSDLCHDLELRHAMANCFEA 514
Query: 343 FLGAMYIDKGMEACEQFCKVCFF 365
+GA+++D G++ ++ F
Sbjct: 515 LMGALFLDSGIKVADRVFSSTLF 537
>gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
Length = 1292
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/381 (70%), Positives = 318/381 (83%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 804 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 863
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ W P+HPLQEQE
Sbjct: 864 HELELRHAMANCFEALMGALLLDGGIKVADEVFTEALFRKEGKLLNIWKNLPEHPLQEQE 923
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+ ++ +LK L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 924 PLGDRRCIDSYRVLKDLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 983
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI+S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK DLK
Sbjct: 984 DTVLQLISSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVYANPKADLK 1043
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLG++Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1044 TKDRADLLEAFLGSLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1103
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G SIQQAEMNAAK AL+
Sbjct: 1104 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALENS 1163
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1164 RDLFPQLDHQKRVIAKSIKKQ 1184
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 762 RKIHYMNTRKRGINTLVSIMSR-FGKDQETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 818
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + +A+ + +L+++ A+ EA
Sbjct: 819 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 878
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R + +LN N P+ LQ+
Sbjct: 879 LMGALLLDGGIKVADEVFTEALF-RKEGKLLNIWKNLPEHPLQE 921
>gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis]
gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis]
Length = 1262
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/381 (70%), Positives = 318/381 (83%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 804 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 863
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ W P+HPLQEQE
Sbjct: 864 HELELRHAMANCFEALMGALLLDGGIKVADEVFTEALFRKEGKLLNIWKNLPEHPLQEQE 923
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+ ++ +LK L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 924 PLGDRRCIDSYRVLKDLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 983
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI+S+YLY HFPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK DLK
Sbjct: 984 DTVLQLISSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVYANPKADLK 1043
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLG++Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1044 TKDRADLLEAFLGSLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1103
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G SIQQAEMNAAK AL+
Sbjct: 1104 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALENS 1163
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1164 RDLFPQLDHQKRVIAKSIKKQ 1184
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 762 RKIHYMNTRKRGINTLVSIMSR-FGKDQETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 818
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG L+ R+++V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 819 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 878
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+GA+ +D G++ ++ F R + +LN N P+ LQ+
Sbjct: 879 LMGALLLDGGIKVADEVFTEALF-RKEGKLLNIWKNLPEHPLQE 921
>gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum]
Length = 1180
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/377 (70%), Positives = 310/377 (82%), Gaps = 2/377 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF+ FPD+EEGGLATYRAAIVQNQHLA LAK + L+ FMLYAHGSDLC
Sbjct: 732 GDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFMLYAHGSDLC 791
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMGALFLDGGI+V D+VFS L+K N + WM P HPLQEQE
Sbjct: 792 HDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLPPHPLQEQE 851
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+W+ + LL+ L E S G+ FNHIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 852 PTGDREWIPKFELLQNLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLG 911
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK +LK
Sbjct: 912 DTVLQLIASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVYNNPKAELK 971
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAF+GA+Y+D+G+E CE FC+V FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 972 TKDRADLLEAFIGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1031
Query: 393 TLDGGEPDIPIYK--VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
T+DGGEPDIP+YK V N+R YTVAVYF+ RLA A G+SIQQAEMNAAK AL+
Sbjct: 1032 TMDGGEPDIPVYKSVVCFTNSEVNTRVYTVAVYFRGRRLASAMGHSIQQAEMNAAKKALE 1091
Query: 451 KCPSICPQLDHQKRVIA 467
+ PQLDHQKRVIA
Sbjct: 1092 ISQDLFPQLDHQKRVIA 1108
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F + +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 690 RRIHYMNTRKRGINTLINIMSR-FGKQQETESNIT--HNERLEFLGDAVVEFLSSIHLFY 746
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 747 TFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFMLYAHGSDLCHDLELRHAMANCFEA 806
Query: 343 FLGAMYIDKGMEACEQFCKVCFF 365
+GA+++D G+ ++ F
Sbjct: 807 LMGALFLDGGINVVDRVFSETLF 829
>gi|396941645|gb|ADB65770.2| drosha [Marsupenaeus japonicus]
Length = 1080
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 254/357 (71%), Positives = 301/357 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FP +EEGGLATYRAAIVQNQHLA LA+++GL+ FMLYAHGSDLC
Sbjct: 686 GDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHGSDLC 745
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H+ EL+HAMANCFEALMGA+FLD GI+ AD V SS L++ ++ W+ YP HP+Q QE
Sbjct: 746 HDFELRHAMANCFEALMGAIFLDTGIEDADSVLSSTLFQGEDLLHSIWVNYPPHPIQMQE 805
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+W++ P+L L E S GV FNHIRLLAR FT RS+G+ NLTLGSNQRLEFLG
Sbjct: 806 PQGDRKWIKSFPILTNLSKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLG 865
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQL+ S+YLY +FPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A + K +LK
Sbjct: 866 DTVLQLVASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYAMYSHLKTELK 925
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+YID+G++ C FC+VCFFPRL FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 926 TKDRADLLEAFLGALYIDRGLDYCRAFCQVCFFPRLHQFIMNQDWNDPKSKLQQCCLTLR 985
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
T+DGGEPDIPIYKVIE GPTN+R YTVAVYF+ RLAKA+G+SIQQAEMNAA+ AL
Sbjct: 986 TMDGGEPDIPIYKVIECKGPTNTRVYTVAVYFRGRRLAKASGHSIQQAEMNAAREAL 1042
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +L++ FP EG L+ R+++V N+ +V+ +G
Sbjct: 672 TESKITHNERLEFLGDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLG 731
Query: 318 MP---FFANIINPKVDLKMKDR-ADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
+ +A+ + D +++ A+ EA +GA+++D G+E + F
Sbjct: 732 LDQFMLYAHGSDLCHDFELRHAMANCFEALMGAIFLDTGIEDADSVLSSTLF 783
>gi|405952841|gb|EKC20603.1| Ribonuclease 3 [Crassostrea gigas]
Length = 1354
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/377 (65%), Positives = 302/377 (80%), Gaps = 3/377 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FITS+HLF++FP +EEGGL TYRAA+VQNQ LA LAK++ LE++MLYAHG DLC
Sbjct: 906 GDAVVEFITSVHLFYMFPYLEEGGLTTYRAALVQNQQLAVLAKKLHLENYMLYAHGPDLC 965
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE +LKHAMANCFEAL+GAL++DGGID+AD+VF+ L+KD + W P H LQE E
Sbjct: 966 HESDLKHAMANCFEALLGALYMDGGIDLADKVFAETLFKDEDKYLNIWRDLPLHVLQEDE 1025
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P DR WVE SP L++L E S GV F+HIRLLAR FT RS+GY +LTLG NQRLEFLG
Sbjct: 1026 PGSDRHWVESSPTLQKLVKFEESIGVKFDHIRLLARAFTLRSVGYNHLTLGHNQRLEFLG 1085
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKV 329
DTVLQL+ SDYL+ HFP+HHEGHLSLLRSSLVNNRTQS+VC+D+G+ F++ K
Sbjct: 1086 DTVLQLVASDYLFKHFPDHHEGHLSLLRSSLVNNRTQSIVCDDLGISDYVIFSDSKGEKQ 1145
Query: 330 DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCL 389
D K K++ADLLEAF+GA+Y+DK +E C +FC+VCFFPRL+ FILNQ+WNDPKS+LQQCCL
Sbjct: 1146 DKKTKEKADLLEAFIGALYVDKDVEVCYKFCEVCFFPRLKDFILNQDWNDPKSQLQQCCL 1205
Query: 390 TLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
TLR LDGGEPDIP+YK IE +GPTN+R YTVAVYF++ERLA G+SIQQAEM AA AL
Sbjct: 1206 TLRELDGGEPDIPVYKCIESIGPTNTRRYTVAVYFRHERLATGIGHSIQQAEMAAATNAL 1265
Query: 450 QKCPSICPQLDHQKRVI 466
+ + P L HQKR +
Sbjct: 1266 MERSELFPILAHQKRFL 1282
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 10/121 (8%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++ ITS +L+ FP EG L+ R++LV N+ +V+ + + +
Sbjct: 899 NERLEYLGDAVVEFITSVHLFYMFPYLEEGGLTTYRAALVQNQQLAVLAKKLHLENYMLY 958
Query: 322 --ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFFPRLQYFILNQEWN 378
+ + DLK A+ EA LGA+Y+D G++ ++ F + F +Y + W
Sbjct: 959 AHGPDLCHESDLKHA-MANCFEALLGALYMDGGIDLADKVFAETLFKDEDKYLNI---WR 1014
Query: 379 D 379
D
Sbjct: 1015 D 1015
>gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus]
Length = 1167
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 231/313 (73%), Positives = 269/313 (85%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TSIHLFH+FPD+EEGGLATYRAAIVQNQHLA LAK++ LE++MLYAHGSDLC
Sbjct: 855 GDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVLAKKLSLEEYMLYAHGSDLC 914
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMG+LFLDGGI+VAD+VF L+K E K W+ YP+HPLQEQE
Sbjct: 915 HDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKSEEDLAKVWVNYPRHPLQEQE 974
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDRQW+ LL++L E S G+ F HIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 975 PTGDRQWIPSFELLQKLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLG 1034
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY FPEHHEGHLSLLRSSLVNN+TQ+VVC+D+GM +A NPK +LK
Sbjct: 1035 DTVLQLIVSEYLYKFFPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNPKAELK 1094
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG++ C FC VCFFPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1095 TKDRADLLEAFLGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1154
Query: 393 TLDGGEPDIPIYK 405
T+DGGEPDIP+YK
Sbjct: 1155 TMDGGEPDIPVYK 1167
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F ++ T ++ N+RLEFLGD V++ +TS +L++
Sbjct: 813 RRIHYMNTRKRGINTLINIMSR-FGAKTE--TESSIAHNERLEFLGDAVVEFLTSIHLFH 869
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 870 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLSLEEYMLYAHGSDLCHDLELRHAMANCFEA 929
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
+G++++D G+E ++ F + L + W N P+ LQ+
Sbjct: 930 LMGSLFLDGGIEVADRVFGETLFKSEE--DLAKVWVNYPRHPLQE 972
>gi|443689602|gb|ELT91975.1| hypothetical protein CAPTEDRAFT_165112 [Capitella teleta]
Length = 1087
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/379 (62%), Positives = 292/379 (77%), Gaps = 8/379 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FITSIHLF +FP +EEGGL YR AIVQN HL LA ++ L+DFMLYAHG DLC
Sbjct: 598 GDAIVEFITSIHLFFMFPGVEEGGLTMYRIAIVQNPHLTKLAGKLNLQDFMLYAHGPDLC 657
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ +L+HAMANCFEALMGALF+DGGIDVAD+VF+ L+ ++ F+ W PQHPLQE E
Sbjct: 658 RDKDLRHAMANCFEALMGALFIDGGIDVADRVFADALFGEDNALFQAWTNLPQHPLQEDE 717
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PDGDR W+ S L+++ E + GV FNHIRLLA+ F+ RS+GY NLT+G NQRLEFLG
Sbjct: 718 PDGDRHWLTHSLHLQKVAKFEDAIGVQFNHIRLLAKAFSLRSVGYNNLTMGHNQRLEFLG 777
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA-----NIINP 327
DT++QLITS+YL+ +FP+HHEGHLSLLRSSLVNN TQSVVC D+GM F + P
Sbjct: 778 DTIIQLITSEYLFKYFPDHHEGHLSLLRSSLVNNFTQSVVCEDLGMMDFVINYERKVSQP 837
Query: 328 KVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQC 387
K + KDRADL+EAFLGA+Y+DKG+ C+ FC+VCF+PRL+ FI N WNDPKS+LQQC
Sbjct: 838 K---RAKDRADLVEAFLGALYVDKGLAFCKIFCQVCFYPRLKEFIKNALWNDPKSQLQQC 894
Query: 388 CLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKV 447
CLTLR L+ +PDIPIYKV+E GPTN+R YTVAVYFK RLA G+SIQQAEMNAA+
Sbjct: 895 CLTLRGLEEEDPDIPIYKVLEFTGPTNTRKYTVAVYFKRHRLAVGQGHSIQQAEMNAAQS 954
Query: 448 ALQKCPSICPQLDHQKRVI 466
AL++ + P + Q++ +
Sbjct: 955 ALKQKSKLFPLIRRQRKFL 973
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
+RLEFLGD +++ ITS +L+ FP EG L++ R ++V N + + + + F
Sbjct: 592 ERLEFLGDAIVEFITSIHLFFMFPGVEEGGLTMYRIAIVQNPHLTKLAGKLNLQDFMLYA 651
Query: 326 NPKVDLKMKD----RADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDP 380
+ + KD A+ EA +GA++ID G++ ++ F + L Q W N P
Sbjct: 652 HGPDLCRDKDLRHAMANCFEALMGALFIDGGIDVADRVFADALFG--EDNALFQAWTNLP 709
Query: 381 KSKLQQ 386
+ LQ+
Sbjct: 710 QHPLQE 715
>gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum]
Length = 1063
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/315 (72%), Positives = 267/315 (84%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF+ FPD+EEGGLATYRAAIVQNQHLA LAK + L+ FMLYAHGSDLC
Sbjct: 732 GDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFMLYAHGSDLC 791
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMGALFLDGGI+V D+VFS L+K N + WM P HPLQEQE
Sbjct: 792 HDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLPPHPLQEQE 851
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+W+ + LL+ L E S G+ FNHIRLLAR FT RS+GYTNLTLGSNQRLEFLG
Sbjct: 852 PTGDREWIPKFELLQNLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLG 911
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY +FPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM +A NPK +LK
Sbjct: 912 DTVLQLIASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVYNNPKAELK 971
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAF+GA+Y+D+G+E CE FC+V FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 972 TKDRADLLEAFIGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLR 1031
Query: 393 TLDGGEPDIPIYKVI 407
T+DGGEPDIP+YK +
Sbjct: 1032 TMDGGEPDIPVYKSV 1046
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R F + +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 690 RRIHYMNTRKRGINTLINIMSR-FGKQQETESNIT--HNERLEFLGDAVVEFLSSIHLFY 746
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 747 TFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFMLYAHGSDLCHDLELRHAMANCFEA 806
Query: 343 FLGAMYIDKGMEACEQFCKVCFF 365
+GA+++D G+ ++ F
Sbjct: 807 LMGALFLDGGINVVDRVFSETLF 829
>gi|391334467|ref|XP_003741625.1| PREDICTED: ribonuclease 3-like [Metaseiulus occidentalis]
Length = 1180
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/346 (65%), Positives = 282/346 (81%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLFH+FP++EEGGLATYRAA+VQNQHLA LAK++ L++FMLYAHGSDLC
Sbjct: 835 GDAVIEFLSSIHLFHMFPEVEEGGLATYRAALVQNQHLAILAKKLQLDEFMLYAHGSDLC 894
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++ELKHAMAN FEALMGA+FLD GI+ D+VF L+ + +W Y +HPLQ QE
Sbjct: 895 HDLELKHAMANSFEALMGAIFLDHGINEVDRVFGETLFGHDPKLLVRWRNYSRHPLQLQE 954
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PDGDR W+E P+L+++ E GV F HIRLLAR FT RS+G+ NLTLGSNQRLEFLG
Sbjct: 955 PDGDRHWIEHYPILQKMTVFEKKIGVEFTHIRLLARAFTHRSVGFNNLTLGSNQRLEFLG 1014
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQL++S+YLY FPEHHEGHLSLLRSS+VNNRTQSVV +D+GM + + LK
Sbjct: 1015 DTVLQLVSSEYLYKFFPEHHEGHLSLLRSSIVNNRTQSVVHDDLGMLECSLYPSSASGLK 1074
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
MKDRAD+LEAFLGA+Y+DKG+E C +FC+V FFPRL+ FI NQ+WNDPKSKLQQCCLTLR
Sbjct: 1075 MKDRADILEAFLGALYVDKGLEYCRRFCQVVFFPRLEQFIRNQDWNDPKSKLQQCCLTLR 1134
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
+ G+P+IP+YKVI+ GPTN+R Y VAVYF+ +R+A ++G+SI+
Sbjct: 1135 HMSNGQPEIPLYKVIDSSGPTNTRRYIVAVYFRGKRMATSSGHSIK 1180
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T T+ +RLEFLGD V++ ++S +L++ FPE EG L+ R++LV N+ +++ +
Sbjct: 821 TASTMHHYERLEFLGDAVIEFLSSIHLFHMFPEVEEGGLATYRAALVQNQHLAILAKKLQ 880
Query: 318 MP---FFANIINPKVDLKMKDR-ADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
+ +A+ + DL++K A+ EA +GA+++D G+ ++ F
Sbjct: 881 LDEFMLYAHGSDLCHDLELKHAMANSFEALMGAIFLDHGINEVDRVFGETLF 932
>gi|349603719|gb|AEP99482.1| Ribonuclease 3-like protein, partial [Equus caballus]
Length = 449
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 47 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 107 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 165
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 166 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 225
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 226 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 284
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 285 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 344
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 345 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 403
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 404 LEKYN--FPQMAHQKRFIERK 422
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 40 NERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLY 99
Query: 322 --ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQYFILN 374
+ + DL+ A+ EA +GA+Y++ +E +Q F P L+ LN
Sbjct: 100 AHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 155
>gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus]
Length = 756
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 354 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 413
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 414 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 472
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 473 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 532
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 533 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 591
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 592 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 651
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 652 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 710
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 711 LEKYN--FPQMAHQKRFIERK 729
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 344 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 403
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQYFILN 374
+ + DL+ A+ EA +GA+Y++ +E +Q F P L+ LN
Sbjct: 404 MLYAHGPDLCRESDLR-HAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 462
>gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens]
Length = 541
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 139 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 198
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 199 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 257
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 258 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 317
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 318 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 376
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 377 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 436
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 437 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 495
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 496 LEKYN--FPQMAHQKRFIERK 514
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 129 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 188
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQYFILN 374
+ + DL+ A+ EA +GA+Y++ +E +Q F P L+ LN
Sbjct: 189 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 247
>gi|348503355|ref|XP_003439230.1| PREDICTED: ribonuclease 3-like [Oreochromis niloticus]
Length = 1347
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/380 (59%), Positives = 294/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 945 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1004
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEALMGA++L+GG++ A Q+F +L+ ++R + W+ YP HPLQ QE
Sbjct: 1005 RESDLRHAMANCFEALMGAVYLEGGLEEARQLFGRLLFNSEDLR-EVWLNYPPHPLQVQE 1063
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P DRQ +E SP+L++L E S GV+F H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1064 PQTDRQLIETSPVLQKLTQFEESIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1123
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1124 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1182
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1183 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1242
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1243 LTLRT-EGKEPDIPLYKTLQTVGPSHARIYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1301
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1302 LEKY--NFPQMAHQKRFIER 1319
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 935 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 994
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ + DL+ A+ EA +GA+Y++ G+E Q F ++ F
Sbjct: 995 MLYAHGPDLCRESDLRHA-MANCFEALMGAVYLEGGLEEARQLFGRLLF 1042
>gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens]
Length = 722
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 320 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 379
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 380 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 438
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 439 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 498
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 499 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 557
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 558 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 617
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 618 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 676
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 677 LEKYN--FPQMAHQKRFIERK 695
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 306 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 365
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 366 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 424
Query: 371 FILN 374
LN
Sbjct: 425 VWLN 428
>gi|33585614|gb|AAH55696.1| Rnasen protein, partial [Mus musculus]
Length = 780
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 378 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 437
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 438 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 496
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 497 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 556
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 557 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 615
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 616 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 675
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 676 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 734
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 735 LEK--YNFPQMAHQKRFIERK 753
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 364 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 423
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 424 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 482
Query: 371 FILN 374
LN
Sbjct: 483 VWLN 486
>gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens]
Length = 769
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 367 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 426
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 427 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 485
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 486 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 545
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 546 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 604
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 605 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 664
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 665 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 723
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 724 LEK--YNFPQMAHQKRFIERK 742
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 353 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 412
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 413 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 471
Query: 371 FILN 374
LN
Sbjct: 472 VWLN 475
>gi|354479102|ref|XP_003501752.1| PREDICTED: ribonuclease 3-like [Cricetulus griseus]
gi|344245508|gb|EGW01612.1| Ribonuclease 3 [Cricetulus griseus]
Length = 1372
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 297/380 (78%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 970 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1029
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W++YP HPLQ QE
Sbjct: 1030 RESDLRHAMANCFEALIGAVYLEGSLEEARQLFGRLLFNDPDLR-EVWLHYPLHPLQLQE 1088
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1089 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1148
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1149 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1207
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1208 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1267
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1268 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1326
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1327 LEKY--NFPQMAHQKRFIER 1344
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 956 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1015
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ F + + DL+ A+ EA +GA+Y++ +E Q F ++ F
Sbjct: 1016 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEARQLFGRLLF 1067
>gi|395510877|ref|XP_003759694.1| PREDICTED: ribonuclease 3 [Sarcophilus harrisii]
Length = 1336
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 934 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 993
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 994 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLR-EVWLNYPLHPLQLQE 1052
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1053 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1112
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1113 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1171
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1172 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1231
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1232 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1290
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1291 LEKY--NFPQMAHQKRFIERK 1309
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 920 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 979
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ F + + DL+ A+ EA +GA+Y++ +E +Q F ++ F
Sbjct: 980 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLF 1031
>gi|334325445|ref|XP_001375491.2| PREDICTED: ribonuclease 3 [Monodelphis domestica]
Length = 1362
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 934 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 993
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 994 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLR-EVWLNYPLHPLQLQE 1052
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1053 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1112
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1113 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1171
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1172 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1231
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1232 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1290
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1291 LEKY--NFPQMAHQKRFIERK 1309
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 920 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 979
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ F + + DL+ A+ EA +GA+Y++ +E +Q F ++ F
Sbjct: 980 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLF 1031
>gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa]
gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa]
Length = 1297
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/374 (57%), Positives = 285/374 (76%), Gaps = 9/374 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FIT+IHLF++F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLC
Sbjct: 851 GDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNLAVLAKKIGLDEFMLYAHGPDLC 910
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE +L+HAMAN FEA+M A++LD GID D++F ++ D++ W HPL+
Sbjct: 911 HESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGHAMFADSKELLSTWFDLEDHPLKRDN 970
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+GDR + P L+ L LE S GV F HIR+LA+ FT R++G+ NLTLG NQRLEFLG
Sbjct: 971 PNGDRHLINDVPALQLLTELEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLG 1030
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV--- 329
DTVLQLIT+DYLY HFP HHEGHLS+LR+ LV+NRTQSV+C+DIGM + ++ PKV
Sbjct: 1031 DTVLQLITTDYLYKHFPYHHEGHLSILRTCLVSNRTQSVICDDIGMTKY--LVTPKVMQK 1088
Query: 330 ----DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
L++KD+ADL+EAFLGA+Y+D+G + C+ FC++CFFPRL++FI+ Q WNDPKS+LQ
Sbjct: 1089 SGLPILRVKDKADLVEAFLGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQ 1148
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
QCCLTLR +DGGEPDIP Y+ I GPTN+R Y VAVYF+ +RLA G+++Q A+M AA
Sbjct: 1149 QCCLTLRQMDGGEPDIPEYRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAA 1208
Query: 446 KVALQKCPSICPQL 459
+ AL K + P L
Sbjct: 1209 ENALIKRSDLFPTL 1222
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 21/137 (15%)
Query: 242 HIRLLARVFTTRSMGYTNL-----TLGS----------NQRLEFLGDTVLQLITSDYLYN 286
H RL+ + + + G+ L LGS N+RLEFLGD V++ IT+ +L+
Sbjct: 806 HDRLVQQQLSAKKRGFHTLLEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITTIHLFY 865
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM-PFFANIINPKV----DLKMKDRADLLE 341
F E EG L+ RS++V N+ +V+ IG+ F P + DL+ A+ E
Sbjct: 866 MFSELDEGGLATYRSTMVQNKNLAVLAKKIGLDEFMLYAHGPDLCHESDLRHA-MANAFE 924
Query: 342 AFLGAMYIDKGMEACEQ 358
A + A+Y+D G++ C++
Sbjct: 925 AMMAAIYLDAGIDECDR 941
>gi|34784428|gb|AAH57687.1| Rnasen protein, partial [Mus musculus]
Length = 942
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 540 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 599
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 600 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 658
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 659 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 718
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 719 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 777
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 778 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 837
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 838 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 896
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 897 LEK--YNFPQMAHQKRFIERK 915
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 526 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 585
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 586 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 644
Query: 371 FILN 374
LN
Sbjct: 645 VWLN 648
>gi|392338628|ref|XP_003753585.1| PREDICTED: ribonuclease 3 [Rattus norvegicus]
Length = 940
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 538 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 597
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 598 RESDLRHAMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 656
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 657 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 716
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 717 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 775
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 776 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 835
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 836 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 894
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 895 LEK--YNFPQMAHQKRFIERK 913
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 524 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 583
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 584 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLRE 642
Query: 371 FILN 374
LN
Sbjct: 643 VWLN 646
>gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens]
Length = 1120
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 718 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 777
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 778 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 836
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 837 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 896
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 897 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 955
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 956 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1015
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1016 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1074
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1075 LEKY--NFPQMAHQKRFIERK 1093
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 704 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 763
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 764 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 822
Query: 371 FILN 374
LN
Sbjct: 823 VWLN 826
>gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
Length = 1349
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 947 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1006
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1007 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1065
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1066 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1125
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1126 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1184
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1185 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1244
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1245 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1303
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1304 LEKY--NFPQMAHQKRFIER 1321
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 933 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 992
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 993 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1051
Query: 371 FILN 374
LN
Sbjct: 1052 VWLN 1055
>gi|441614801|ref|XP_003274996.2| PREDICTED: ribonuclease 3 [Nomascus leucogenys]
Length = 1024
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 622 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 681
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 682 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 740
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 741 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 800
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 801 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 859
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 860 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 919
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 920 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 978
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 979 LEK--YNFPQMAHQKRFIERK 997
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 608 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 667
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 668 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 726
Query: 371 FILN 374
LN
Sbjct: 727 VWLN 730
>gi|345798933|ref|XP_536514.3| PREDICTED: ribonuclease 3 isoform 1 [Canis lupus familiaris]
Length = 1336
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 934 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 993
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 994 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1052
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1053 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1112
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1113 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1171
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1172 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1231
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1232 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1290
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1291 LEKY--NFPQMAHQKRFIERK 1309
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 920 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 979
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 980 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1038
Query: 371 FILN 374
LN
Sbjct: 1039 VWLN 1042
>gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease 3 isoform 1 [Equus caballus]
Length = 1374
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|386781115|ref|NP_001248086.1| ribonuclease 3 [Macaca mulatta]
gi|380783731|gb|AFE63741.1| ribonuclease 3 isoform 2 [Macaca mulatta]
gi|380783733|gb|AFE63742.1| ribonuclease 3 isoform 2 [Macaca mulatta]
gi|383412671|gb|AFH29549.1| ribonuclease 3 isoform 2 [Macaca mulatta]
gi|384943204|gb|AFI35207.1| ribonuclease 3 isoform 2 [Macaca mulatta]
Length = 1337
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 935 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 994
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 995 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1053
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1054 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1113
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1114 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1172
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1173 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1232
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1233 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1291
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1292 LEKY--NFPQMAHQKRFIERK 1310
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 921 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 980
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 981 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1039
Query: 371 FILN 374
LN
Sbjct: 1040 VWLN 1043
>gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus]
Length = 1338
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 936 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 995
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 996 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1054
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1055 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1114
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1115 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1173
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1174 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1233
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1234 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1292
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1293 LEKY--NFPQMAHQKRFIER 1310
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 922 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 981
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 982 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1040
Query: 371 FILN 374
LN
Sbjct: 1041 VWLN 1044
>gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3 [Pongo abelii]
Length = 1374
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|395840340|ref|XP_003793018.1| PREDICTED: ribonuclease 3 [Otolemur garnettii]
Length = 1345
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 943 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1002
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1003 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1061
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1062 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1121
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1122 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1180
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1181 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1240
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1241 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1299
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1300 LEKY--NFPQMAHQKRFIER 1317
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 929 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 988
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 989 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1047
Query: 371 FILN 374
LN
Sbjct: 1048 VWLN 1051
>gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus]
Length = 1374
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens]
gi|426385042|ref|XP_004059047.1| PREDICTED: ribonuclease 3 isoform 2 [Gorilla gorilla gorilla]
gi|20139357|sp|Q9NRR4.2|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
Full=Ribonuclease III; Short=RNase III; AltName:
Full=p241
Length = 1374
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|380812086|gb|AFE77918.1| ribonuclease 3 isoform 2 [Macaca mulatta]
gi|384946624|gb|AFI36917.1| ribonuclease 3 isoform 2 [Macaca mulatta]
Length = 1329
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 927 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 986
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 987 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1045
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1046 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1105
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1106 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1164
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1165 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1224
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1225 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1283
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1284 LEKY--NFPQMAHQKRFIERK 1302
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 913 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 972
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 973 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1031
Query: 371 FILN 374
LN
Sbjct: 1032 VWLN 1035
>gi|338718922|ref|XP_003363908.1| PREDICTED: ribonuclease 3 [Equus caballus]
Length = 1337
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 935 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 994
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 995 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1053
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1054 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1113
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1114 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1172
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1173 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1232
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1233 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1291
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1292 LEKY--NFPQMAHQKRFIERK 1310
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 921 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 980
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 981 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1039
Query: 371 FILN 374
LN
Sbjct: 1040 VWLN 1043
>gi|37994704|gb|AAH60265.1| Rnasen protein, partial [Mus musculus]
Length = 1231
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 829 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 888
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 889 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 947
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 948 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1007
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1008 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1066
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1067 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1126
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1127 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1185
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1186 LEKY--NFPQMAHQKRFIERK 1204
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 815 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 874
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 875 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 933
Query: 371 FILN 374
LN
Sbjct: 934 VWLN 937
>gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes]
gi|410219538|gb|JAA06988.1| drosha, ribonuclease type III [Pan troglodytes]
gi|410267416|gb|JAA21674.1| drosha, ribonuclease type III [Pan troglodytes]
gi|410300306|gb|JAA28753.1| drosha, ribonuclease type III [Pan troglodytes]
gi|410300310|gb|JAA28755.1| drosha, ribonuclease type III [Pan troglodytes]
gi|410355701|gb|JAA44454.1| drosha, ribonuclease type III [Pan troglodytes]
Length = 1374
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|345798931|ref|XP_854135.2| PREDICTED: ribonuclease 3 isoform 2 [Canis lupus familiaris]
Length = 1373
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 971 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1030
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1031 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1089
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1090 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1149
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1150 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1208
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1209 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1268
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1269 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1327
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1328 LEKY--NFPQMAHQKRFIERK 1346
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 957 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1016
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1017 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1075
Query: 371 FILN 374
LN
Sbjct: 1076 VWLN 1079
>gi|397495447|ref|XP_003818566.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Pan paniscus]
Length = 1343
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 941 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1000
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1001 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1059
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1060 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1119
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1120 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1178
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1179 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1238
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1239 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1297
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1298 LEKY--NFPQMAHQKRFIER 1315
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 927 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 986
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 987 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1045
Query: 371 FILN 374
LN
Sbjct: 1046 VWLN 1049
>gi|410949736|ref|XP_003981574.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Felis catus]
Length = 1374
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIERK 1347
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens]
gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes]
gi|426385040|ref|XP_004059046.1| PREDICTED: ribonuclease 3 isoform 1 [Gorilla gorilla gorilla]
gi|410219536|gb|JAA06987.1| drosha, ribonuclease type III [Pan troglodytes]
gi|410267414|gb|JAA21673.1| drosha, ribonuclease type III [Pan troglodytes]
gi|410300308|gb|JAA28754.1| drosha, ribonuclease type III [Pan troglodytes]
gi|410355699|gb|JAA44453.1| drosha, ribonuclease type III [Pan troglodytes]
Length = 1337
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 935 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 994
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 995 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1053
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1054 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1113
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1114 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1172
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1173 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1232
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1233 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1291
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1292 LEKY--NFPQMAHQKRFIER 1309
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 921 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 980
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 981 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1039
Query: 371 FILN 374
LN
Sbjct: 1040 VWLN 1043
>gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus]
gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus]
gi|81882947|sp|Q5HZJ0.1|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
Full=Ribonuclease III; Short=RNase III
gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus]
gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus]
gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus]
Length = 1373
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 971 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1030
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1031 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1089
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1090 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1149
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1150 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1208
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1209 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1268
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1269 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1327
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1328 LEKY--NFPQMAHQKRFIERK 1346
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 957 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1016
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1017 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1075
Query: 371 FILN 374
LN
Sbjct: 1076 VWLN 1079
>gi|403290285|ref|XP_003936253.1| PREDICTED: ribonuclease 3 [Saimiri boliviensis boliviensis]
Length = 1374
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus]
Length = 1337
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 935 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 994
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 995 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1053
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1054 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1113
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1114 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1172
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1173 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1232
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1233 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1291
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1292 LEKY--NFPQMAHQKRFIER 1309
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 921 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 980
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 981 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1039
Query: 371 FILN 374
LN
Sbjct: 1040 VWLN 1043
>gi|402871240|ref|XP_003899581.1| PREDICTED: ribonuclease 3 [Papio anubis]
Length = 1374
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|355691240|gb|EHH26425.1| Ribonuclease 3 [Macaca mulatta]
gi|355749843|gb|EHH54181.1| Ribonuclease 3 [Macaca fascicularis]
gi|387541650|gb|AFJ71452.1| ribonuclease 3 isoform 1 [Macaca mulatta]
Length = 1374
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda
melanoleuca]
Length = 1369
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 967 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1026
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1027 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1085
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1086 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1145
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1146 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1204
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1205 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1264
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1265 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1323
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1324 LEKY--NFPQMAHQKRFIERK 1342
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 953 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1012
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1013 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1071
Query: 371 FILN 374
LN
Sbjct: 1072 VWLN 1075
>gi|426246680|ref|XP_004017120.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Ovis aries]
Length = 1339
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 937 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 996
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 997 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1055
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1056 PNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1115
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1116 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1174
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1175 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1234
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1235 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1293
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1294 LEKY--NFPQMAHQKRFIERK 1312
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 923 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 982
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 983 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1041
Query: 371 FILN 374
LN
Sbjct: 1042 VWLN 1045
>gi|440912593|gb|ELR62150.1| Ribonuclease 3, partial [Bos grunniens mutus]
Length = 1368
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 966 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1025
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1026 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1084
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1085 PNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1144
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1145 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1203
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1204 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1263
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1264 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1322
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1323 LEKY--NFPQMAHQKRFIERK 1341
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 952 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1011
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1012 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1070
Query: 371 FILN 374
LN
Sbjct: 1071 VWLN 1074
>gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease 3 isoform 2 [Bos taurus]
gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease 3 isoform 2 [Bos taurus]
gi|296475748|tpg|DAA17863.1| TPA: ribonuclease III, nuclear-like isoform 2 [Bos taurus]
Length = 1330
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 928 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 987
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 988 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1046
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1047 PNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1106
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1107 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1165
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1166 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1225
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1226 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1284
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1285 LEKY--NFPQMAHQKRFIERK 1303
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 914 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 973
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 974 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1032
Query: 371 FILN 374
LN
Sbjct: 1033 VWLN 1036
>gi|29748104|gb|AAH50057.1| Rnasen protein, partial [Mus musculus]
Length = 705
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/381 (58%), Positives = 295/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 303 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 362
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 363 SESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 421
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 422 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 481
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHE HL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 482 DSIMQLVATEYLFIHFPDHHERHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 540
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 541 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 600
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 601 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 659
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 660 LEK--YNFPQMAHQKRFIERK 678
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 289 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 348
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 349 LDRFMLYAHGPDLCSESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 407
Query: 371 FILN 374
LN
Sbjct: 408 VWLN 411
>gi|402591655|gb|EJW85584.1| RNase3 domain-containing protein [Wuchereria bancrofti]
Length = 1313
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/396 (55%), Positives = 291/396 (73%), Gaps = 12/396 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FIT+IHLF++F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLC
Sbjct: 865 GDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLC 924
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE +L+HAMAN FEA+M A++LD GID D++F ++ D++ W HPL+
Sbjct: 925 HESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGHAMFADSKELLSTWFDLEDHPLKRDN 984
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+GDR + P L+ L LE + G+ F HIR+LA+ FT R++G+ NLTLG NQRLEFLG
Sbjct: 985 PNGDRHLINGVPALQLLTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLG 1044
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV--- 329
DTVLQLIT+DYLY HFP HHEGHLS+LR+ LV+NRTQSV+C+DIGM + ++ PKV
Sbjct: 1045 DTVLQLITTDYLYKHFPYHHEGHLSILRTCLVSNRTQSVICDDIGMTKY--LVTPKVMQK 1102
Query: 330 ----DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
L++KD+ADL+EAFLGA+Y+D+G + C+ FC++CFFPRL++FI+ Q WNDPKS+LQ
Sbjct: 1103 SGLPVLRVKDKADLVEAFLGALYVDRGFDYCKIFCRICFFPRLKFFIIAQHWNDPKSQLQ 1162
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
QCCLTLR +DGGEPDIP Y+ I GPTN+R Y VAVYF+ +RLA G+++Q A+M AA
Sbjct: 1163 QCCLTLRQMDGGEPDIPEYRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAA 1222
Query: 446 KVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFGA 481
+ AL K + P L K S + E GA
Sbjct: 1223 ENALIKRSDLFPTL---KNTAKHSTMQNRRENGLGA 1255
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 21/138 (15%)
Query: 242 HIRLLARVFTTRSMGYTNL-----TLGS----------NQRLEFLGDTVLQLITSDYLYN 286
H RL+ + + + G+ L LGS N+RLEFLGD V++ IT+ +L+
Sbjct: 820 HDRLVQQQLSAKKRGFHTLMEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITTIHLFY 879
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF-----ANIINPKVDLKMKDRADLLE 341
F E EG L+ RS++V N+ +++ IG+ F + + DL+ A+ E
Sbjct: 880 MFSELDEGGLATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLCHESDLRHA-MANAFE 938
Query: 342 AFLGAMYIDKGMEACEQF 359
A + A+Y+D G++ C++
Sbjct: 939 AMMAAIYLDAGIDECDRI 956
>gi|404501514|ref|NP_001101125.2| ribonuclease 3 [Rattus norvegicus]
gi|392345448|ref|XP_003749268.1| PREDICTED: ribonuclease 3 [Rattus norvegicus]
Length = 1373
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 971 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1030
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1031 RESDLRHAMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1089
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1090 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1149
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1150 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1208
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1209 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1268
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1269 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1327
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1328 LEKY--NFPQMAHQKRFIERK 1346
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 957 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1016
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1017 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLRE 1075
Query: 371 FILN 374
LN
Sbjct: 1076 VWLN 1079
>gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio]
gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio]
Length = 1289
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 294/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+H+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 892 GDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 951
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+GG++ A +F +L+ ++R + W+ YP HPLQ QE
Sbjct: 952 RESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMR-EVWLNYPPHPLQVQE 1010
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P DRQ +E SP+L++L E + GV+F H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1011 PLTDRQLIESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1070
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1071 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1129
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1130 VALRTKTLADLLESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1189
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1190 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1248
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1249 LEKY--NFPQMAHQKRFIER 1266
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 7/109 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY+ FP EG L+ R+++V N+ +++ + + F
Sbjct: 882 INHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 941
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGM-EACEQFCKVCF 364
+ + DL+ A+ EA +GA+Y++ G+ EA + F ++ F
Sbjct: 942 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGGLEEAKDLFGRLLF 989
>gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease 3 [Bos taurus]
gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease 3 isoform 1 [Bos taurus]
gi|296475747|tpg|DAA17862.1| TPA: ribonuclease III, nuclear-like isoform 1 [Bos taurus]
Length = 1367
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 965 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1024
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1025 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1083
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1084 PNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1143
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1144 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1202
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1203 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1262
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1263 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1321
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1322 LEKY--NFPQMAHQKRFIERK 1340
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 951 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1010
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1011 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1069
Query: 371 FILN 374
LN
Sbjct: 1070 VWLN 1073
>gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi]
gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi]
Length = 1329
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 213/374 (56%), Positives = 285/374 (76%), Gaps = 9/374 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FIT+IHLF++F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLC
Sbjct: 881 GDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLC 940
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE +L+HAMAN FEA+M A++LD GID D++F ++ D++ W HPL+
Sbjct: 941 HESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGHAMFADSKELLSTWFDLEDHPLKRDN 1000
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+GDR + P L+ L LE + G+ F HIR+LA+ FT R++G+ NLTLG NQRLEFLG
Sbjct: 1001 PNGDRHLINGVPALQLLTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLG 1060
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV--- 329
DTVLQLIT+DYLY HFP HHEGHLS+LR+ LV+NRTQSV+C+DIGM + ++ PKV
Sbjct: 1061 DTVLQLITTDYLYKHFPYHHEGHLSILRTCLVSNRTQSVICDDIGMTKY--LVTPKVMQK 1118
Query: 330 ----DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
L++KD+ADL+EAFLGA+Y+D+G + C+ FC++CFFPRL++FI+ Q WNDPKS+LQ
Sbjct: 1119 SGMPVLRVKDKADLVEAFLGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQ 1178
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
QCCLTLR +DGGEPDIP Y+ I GPTN+R Y VAVYF+ +RLA G+++Q A+M AA
Sbjct: 1179 QCCLTLRQMDGGEPDIPEYRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAA 1238
Query: 446 KVALQKCPSICPQL 459
+ AL K + P L
Sbjct: 1239 ENALIKRSDLFPTL 1252
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 21/137 (15%)
Query: 242 HIRLLARVFTTRSMGYTNL-----TLGS----------NQRLEFLGDTVLQLITSDYLYN 286
H RL+ + + + G+ L LGS N+RLEFLGD V++ IT+ +L+
Sbjct: 836 HDRLVQQQLSAKKRGFHTLMEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITTIHLFY 895
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM-PFFANIINPKV----DLKMKDRADLLE 341
F E EG L+ RS++V N+ +++ IG+ F P + DL+ A+ E
Sbjct: 896 MFSELDEGGLATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLCHESDLRHA-MANAFE 954
Query: 342 AFLGAMYIDKGMEACEQ 358
A + A+Y+D G++ C++
Sbjct: 955 AMMAAIYLDAGIDECDR 971
>gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens]
Length = 1374
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/380 (58%), Positives = 295/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDPFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+Y DK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYTDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 M-PFFANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ PF P + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDPFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus]
Length = 1021
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/381 (58%), Positives = 295/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 619 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 678
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D +R + W+ YP HPLQ QE
Sbjct: 679 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPGLR-EVWLNYPLHPLQLQE 737
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 738 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 797
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A + N K
Sbjct: 798 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-VTNDKTKRP 856
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 857 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 916
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 917 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 975
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 976 LEK--YNFPQMAHQKRFIERK 994
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 605 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 664
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 665 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPGLRE 723
Query: 371 FILN 374
LN
Sbjct: 724 VWLN 727
>gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease 3 [Taeniopygia guttata]
Length = 1338
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 294/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ LE FMLYAHG DLC
Sbjct: 936 GDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERFMLYAHGPDLC 995
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ + ++R W+ YP HPLQ QE
Sbjct: 996 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNEKDLR-DVWLNYPLHPLQLQE 1054
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1055 SNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1114
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1115 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1173
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1174 VTLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1233
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1234 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1292
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1293 LEKY--NFPQMAHQKRFIER 1310
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 926 INHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERF 985
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ + DL+ A+ EA +GA+Y++ +E +Q F ++ F
Sbjct: 986 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLF 1033
>gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus]
gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus]
Length = 1336
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 294/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 934 GDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 993
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R W+ YP HPLQ QE
Sbjct: 994 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLR-DVWLNYPLHPLQLQE 1052
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1053 SNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1112
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1113 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1171
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1172 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1231
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1232 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1290
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1291 LEKY--NFPQMAHQKRFIER 1308
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 924 INHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 983
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ + DL+ A+ EA +GA+Y++ +E +Q F ++ F
Sbjct: 984 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLF 1031
>gi|355716698|gb|AES05694.1| ribonuclease type III, nuclear [Mustela putorius furo]
Length = 593
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/374 (59%), Positives = 292/374 (78%), Gaps = 9/374 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 225 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 284
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 285 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 343
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 344 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 403
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 404 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 462
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 463 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 522
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 523 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 581
Query: 449 LQKCPSICPQLDHQ 462
L+K PQ+ HQ
Sbjct: 582 LEKYN--FPQMAHQ 593
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 215 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 274
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQYFILN 374
+ + DL+ A+ EA +GA+Y++ +E +Q F P L+ LN
Sbjct: 275 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 333
>gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus]
Length = 541
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/381 (58%), Positives = 294/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR A+VQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 139 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAMLAKKLELDRFMLYAHGPDLC 198
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 199 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 257
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 258 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 317
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 318 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 376
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADL E+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 377 VALRTKTLADLWESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 436
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+Y VAVYFK ER+ G SIQQAEM AA A
Sbjct: 437 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYPVAVYFKGERIGCGKGPSIQQAEMGAAMDA 495
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 496 LEKYN--FPQMAHQKRFIERK 514
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 129 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAMLAKKLELDRF 188
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQYFILN 374
+ + DL+ A+ EA +GA+Y++ +E +Q F P L+ LN
Sbjct: 189 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 247
>gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis]
gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis]
Length = 1325
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/380 (59%), Positives = 294/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 927 GDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 986
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEALMGA++L+GG++ A Q+F +L+ + ++R W+ YP HPLQ QE
Sbjct: 987 RESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLR-DVWLNYPLHPLQLQE 1045
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
+ DR +E SP+LK+L E + GV F H+RLLARVFT R++G+ +LTLG NQR+EFLG
Sbjct: 1046 SNSDRHLIETSPVLKKLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLG 1105
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1106 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1164
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1165 VVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1224
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1225 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1283
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1284 LEKY--NFPQMAHQKRFIER 1301
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 913 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLE 972
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ F + + DL+ A+ EA +GA+Y++ G+E +Q F ++ F
Sbjct: 973 LDRFMLYAHGPDLCRESDLRHA-MANCFEALMGAVYLEGGLEEAKQLFGRLLF 1024
>gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus (Silurana) tropicalis]
Length = 1325
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 293/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 927 GDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 986
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEALMGA++L+GG++ A Q+F +L+ + ++R W+ YP HPLQ QE
Sbjct: 987 RESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLR-DVWLNYPLHPLQLQE 1045
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
+ DR +E SP+LK+L E + GV F H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1046 SNSDRHLIETSPVLKKLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1105
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1106 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1164
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1165 VVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1224
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1225 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1283
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1284 LEKY--NFPQMAHQKRFIER 1301
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I I +++R+ T + N+RLEFLGD V++ +TS +LY
Sbjct: 885 RKVHYMHMRKKGINTLINIMSRLGQDDP---TPSRINHNERLEFLGDAVVEFLTSVHLYY 941
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF-----ANIINPKVDLKMKDRADLLE 341
FP EG L+ R+++V N+ +++ + + F + + DL+ A+ E
Sbjct: 942 LFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHA-MANCFE 1000
Query: 342 AFLGAMYIDKGMEACEQ-FCKVCF 364
A +GA+Y++ G+E +Q F ++ F
Sbjct: 1001 ALMGAVYLEGGLEEAKQLFGRLLF 1024
>gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum]
gi|333440974|gb|AEF32762.1| DROSHA [Ascaris suum]
Length = 1304
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 215/387 (55%), Positives = 291/387 (75%), Gaps = 17/387 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FIT+IHLF +F +++EGGLATYR+ +VQN++LA LAK+IGL++FMLYAHG DLC
Sbjct: 863 GDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNLAVLAKKIGLDEFMLYAHGPDLC 922
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE +L+HAMAN FEA+M A++LD GID D++F + ++ NE W +HPL+
Sbjct: 923 HESDLRHAMANAFEAMMAAIYLDAGIDECDRIFGNAMFGGNEELLGAWFELEEHPLKRDN 982
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +++ P L+ L E S GV F HIR+LA+ FT R++G+ NLTLG NQRLEFLG
Sbjct: 983 PYGDRHLIKEVPALQLLTEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLG 1042
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV--- 329
DTVLQLIT+DYLY HFP HHEGHLS+LR+ LV+N+TQSV+C+D+GM + ++ PK
Sbjct: 1043 DTVLQLITTDYLYKHFPMHHEGHLSILRTCLVSNKTQSVICDDVGMTKY--LVMPKAMQK 1100
Query: 330 ----DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
L++KD+ADL+E+FLGA+Y+D+G+ C+ FC+VCFFPRL++FI++Q WNDPKS+LQ
Sbjct: 1101 NGAPVLRVKDKADLVESFLGALYVDRGLGYCKVFCRVCFFPRLKFFIVSQRWNDPKSQLQ 1160
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
QCCLTLR +DGGEPDIP Y+ I GPTN+R Y VAVYF+ +RLA +G+++Q A+M+AA
Sbjct: 1161 QCCLTLRQVDGGEPDIPEYRTIAVEGPTNTRVYKVAVYFRKKRLAVGSGHTMQIAQMHAA 1220
Query: 446 KVALQKCPSICPQL--------DHQKR 464
+ AL + + P L D QKR
Sbjct: 1221 ENALIEQAHLFPALRPPAKRWNDDQKR 1247
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM-PF 320
L N+RLEFLGD V++ IT+ +L+ F E EG L+ RS++V N+ +V+ IG+ F
Sbjct: 853 LNHNERLEFLGDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNLAVLAKKIGLDEF 912
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
P + DL+ A+ EA + A+Y+D G++ C++ F
Sbjct: 913 MLYAHGPDLCHESDLRHA-MANAFEAMMAAIYLDAGIDECDRIFGNAMF 960
>gi|431917274|gb|ELK16810.1| Ribonuclease 3 [Pteropus alecto]
Length = 1278
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/406 (55%), Positives = 296/406 (72%), Gaps = 34/406 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 851 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 910
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 911 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 969
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 970 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1029
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLS-------------------------LLRSSLVNNR 307
D+++QL+ ++YL+ HFP+HHEGHL+ LLRSSLVNNR
Sbjct: 1030 DSIMQLVATEYLFIHFPDHHEGHLTAALLYNTEWRTLTLKGGTWGLVTSDLLRSSLVNNR 1089
Query: 308 TQSVVCNDIGMPFFANIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVC 363
TQ+ V ++GM +A I N K V L+ K ADLLE+F+ A+YIDK +E F VC
Sbjct: 1090 TQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVC 1148
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
FFPRL+ FILNQ+WNDPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVY
Sbjct: 1149 FFPRLKEFILNQDWNDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVY 1207
Query: 424 FKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKS 469
FK ER+ G SIQQAEM AA AL+K PQ+ HQKR I +
Sbjct: 1208 FKGERIGCGKGPSIQQAEMGAAMDALEKY--NFPQMAHQKRFIERK 1251
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 837 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 896
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 897 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 955
Query: 371 FILN 374
LN
Sbjct: 956 VWLN 959
>gi|351694357|gb|EHA97275.1| Ribonuclease 3 [Heterocephalus glaber]
Length = 1388
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/437 (51%), Positives = 294/437 (67%), Gaps = 64/437 (14%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 929 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 988
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV---------------------------- 184
E +L+HAMANCFEAL+GA++L+G ++ A Q+
Sbjct: 989 RESDLRHAMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPVRVKSEKFLSGYFVYKVKD 1048
Query: 185 ----FSSVLYKDNEVRFKQ------------------------WMYYPQHPLQEQEPDGD 216
F +V + V F+ W+ YP HPLQ QEP+ D
Sbjct: 1049 ECKAFRAVDLDEKPVLFRNEAVMQTEGAVQAVSVGEQTDLREVWLNYPLHPLQLQEPNTD 1108
Query: 217 RQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVL 276
RQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++
Sbjct: 1109 RQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIM 1168
Query: 277 QLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK----VDLK 332
QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K V L+
Sbjct: 1169 QLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALR 1227
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCCLTLR
Sbjct: 1228 TKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLR 1287
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA AL+K
Sbjct: 1288 T-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKY 1346
Query: 453 PSICPQLDHQKRVIAKS 469
PQ+ HQKR I +
Sbjct: 1347 --NFPQMAHQKRFIERK 1361
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 915 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 974
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ F + + DL+ A+ EA +GA+Y++ +E +Q F ++ F
Sbjct: 975 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGTLEEAKQLFGRLLF 1026
>gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis]
Length = 1323
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/380 (56%), Positives = 282/380 (74%), Gaps = 24/380 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 936 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 995
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ + QE
Sbjct: 996 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFN----------------CKLQE 1039
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
+ DRQ +E SP+L++L E + GV F H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1040 SNTDRQLIETSPVLQKLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1099
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1100 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1158
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1159 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1218
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1219 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMCAAMDA 1277
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1278 LEKY--NFPQMAHQKRFIER 1295
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 926 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 985
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFFPRLQ 369
+ + DL+ A+ EA +GA+Y++ +E +Q F ++ F +LQ
Sbjct: 986 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNCKLQ 1038
>gi|390360066|ref|XP_800324.2| PREDICTED: ribonuclease 3-like [Strongylocentrotus purpuratus]
Length = 1683
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/365 (56%), Positives = 276/365 (75%), Gaps = 10/365 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FI+S HL+H+FPD+EEGGLATYR A+VQNQHL+ LAK++ L+ +MLYAHG DLC
Sbjct: 1059 GDAVIEFISSTHLYHLFPDLEEGGLATYRMALVQNQHLSVLAKKLELDKYMLYAHGPDLC 1118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+L+HAMANC EA+MGA++L+ G+D+ ++F +L+++ ++ W+ +P+ PLQ
Sbjct: 1119 RPYDLRHAMANCLEAVMGAIYLEAGLDLCRKIFGKLLFEEEYLQTI-WLNHPKDPLQADF 1177
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DR ++ S +L++L E +G+ F HIRLLAR FT R++GYTNLT+GSNQRLEFLG
Sbjct: 1178 PETDRHLIKNSEVLQKLTVFEGDTGMRFTHIRLLARAFTQRTVGYTNLTMGSNQRLEFLG 1237
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV--- 329
D+VLQL+ S YLY HFP HHEGHLSLLRSSLVNN+TQS++ D+G+ + II PK
Sbjct: 1238 DSVLQLVVSSYLYKHFPNHHEGHLSLLRSSLVNNKTQSIIAQDLGLVEY--IIEPKTRSR 1295
Query: 330 ---DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
++ MK ADL+EA +GAMY+D G+E FC V F+PRL+ FI Q WND KS+LQQ
Sbjct: 1296 NENNIPMKIMADLVEALIGAMYVDHGLEVVSTFCSVVFYPRLKDFIQTQHWNDAKSQLQQ 1355
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLTLR ++G EPD+P YKVI GPTNSR Y+VAVYFK++R++ T ++I+ AEM AAK
Sbjct: 1356 CCLTLR-VEGQEPDVPNYKVIGQSGPTNSRQYSVAVYFKSKRMSTGTASNIRDAEMEAAK 1414
Query: 447 VALQK 451
AL+K
Sbjct: 1415 NALRK 1419
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 14/128 (10%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---- 321
+RLEFLGD V++ I+S +LY+ FP+ EG L+ R +LV N+ SV+ + + +
Sbjct: 1053 ERLEFLGDAVIEFISSTHLYHLFPDLEEGGLATYRMALVQNQHLSVLAKKLELDKYMLYA 1112
Query: 322 --ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFFPRLQYFILNQEW- 377
++ P DL+ A+ LEA +GA+Y++ G++ C + F K+ F + L W
Sbjct: 1113 HGPDLCRP-YDLRHA-MANCLEAVMGAIYLEAGLDLCRKIFGKLLF----EEEYLQTIWL 1166
Query: 378 NDPKSKLQ 385
N PK LQ
Sbjct: 1167 NHPKDPLQ 1174
>gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
Length = 1490
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/380 (53%), Positives = 266/380 (70%), Gaps = 41/380 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS HL+ +FPD+EEGGLATYR AIVQNQHLA LAK++ L++FMLYAHG DLC
Sbjct: 1097 GDAVVEFLTSSHLYFMFPDLEEGGLATYRTAIVQNQHLAVLAKKLRLDEFMLYAHGPDLC 1156
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANC EAL+GA+++ G++ ++F +L+ D
Sbjct: 1157 RESDLRHAMANCLEALIGAMYMQQGLEETKKLFCRLLFSD-------------------- 1196
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
++L E G+ F H+RLLAR FT R++G+ NLTLG NQRLEFLG
Sbjct: 1197 --------------ERLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLG 1242
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF----ANIINPK 328
D+V+Q+++S+YLY HFP+HHEGHLSLLRSSLVNNRTQ++V D+GM + K
Sbjct: 1243 DSVMQMVSSEYLYKHFPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEYIISSDKARQGK 1302
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
+ L+ K ADL+EAF+GA+Y+D+G+E F VCFFPRL+ FI+NQEWNDPKS+LQQCC
Sbjct: 1303 LSLRQKTLADLMEAFMGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWNDPKSQLQQCC 1362
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP YK+++ GP+++R YTVAVYFK ER+ G+SIQQAEM AA+ A
Sbjct: 1363 LTLRT-EGKEPDIPFYKILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQAEMAAARDA 1421
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+ PQL HQ+R + K
Sbjct: 1422 LKNY--KFPQLAHQRRFMDK 1439
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 70/119 (58%), Gaps = 10/119 (8%)
Query: 255 MGYTNLT---LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSV 311
MG+ T + N+RLEFLGD V++ +TS +LY FP+ EG L+ R+++V N+ +V
Sbjct: 1077 MGHDEETPSLINHNERLEFLGDAVVEFLTSSHLYFMFPDLEEGGLATYRTAIVQNQHLAV 1136
Query: 312 VCNDIGMPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ + + F + + DL+ A+ LEA +GAMY+ +G+E ++ FC++ F
Sbjct: 1137 LAKKLRLDEFMLYAHGPDLCRESDLRHA-MANCLEALIGAMYMQQGLEETKKLFCRLLF 1194
>gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi]
Length = 1155
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 270/382 (70%), Gaps = 6/382 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F S+ LFH+FP++ EGGL+ YR AIV+ QHL LAK++ LE+F+ AHGS
Sbjct: 544 GDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEKQHLVVLAKKLHLEEFLRCAHGSAAS 603
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQEQ 211
+ +A+CF+ALMGAL LDGGI VA +VF+S LY +E + + W YP+HPLQ+Q
Sbjct: 604 NRT-----VADCFQALMGALLLDGGIAVASRVFASTLYGPDEPKLHEIWTNYPRHPLQQQ 658
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
EP+ DR +E LK L E S GV FNHIRLLAR FT RS GYT LTLG+NQRLEFL
Sbjct: 659 EPNSDRHHIEWCERLKTLTRFEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFL 718
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+LI ++++Y HFP+HH HL+ R+ LV+NRT + VC+D+GM +A I NPK +L
Sbjct: 719 GDAVLKLIGTEHVYRHFPKHHSQHLADWRNQLVSNRTLATVCDDLGMAHYAIISNPKTEL 778
Query: 332 KMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL 391
KMKDRADLLEAF+GA+Y+DKG+ CE+ C+VC FPRLQ I NQE NDPK+KLQQ C
Sbjct: 779 KMKDRADLLEAFIGALYVDKGLLHCEKLCEVCLFPRLQELIENQERNDPKTKLQQHCHAT 838
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ G PD P+YK+I +G +R TV VYF+ ++LA A G+SI+QAE NAA++AL++
Sbjct: 839 HPMYGSTPDHPLYKLIGCIGSMKNRVCTVGVYFRGKQLAIANGHSIRQAEENAARLALEQ 898
Query: 452 CPSICPQLDHQKRVIAKSIELQ 473
C L ++K ++++ + Q
Sbjct: 899 CKDRFLPLRNKKHLMSQKLRDQ 920
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RL FLGD V+ S L++ FP EG LS+ R ++V + V+ + + F
Sbjct: 537 NERLAFLGDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEKQHLVVLAKKLHLEEFLRC 596
Query: 325 INPKVDLKMKDRADLLEAFLGAMYIDKGME-ACEQFCKVCFFPRLQYFILNQEW-NDPKS 382
+ + AD +A +GA+ +D G+ A F + P L++ W N P+
Sbjct: 597 AHGSA-ASNRTVADCFQALMGALLLDGGIAVASRVFASTLYGP--DEPKLHEIWTNYPRH 653
Query: 383 KLQQ-----------CCLTLRTLDGGEPDIPI----YKVIEHVGPTNSRSYTVAVYFKNE 427
LQQ C L+TL E I + +++ SR YT N+
Sbjct: 654 PLQQQEPNSDRHHIEWCERLKTLTRFEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQ 713
Query: 428 RL 429
RL
Sbjct: 714 RL 715
>gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni]
gi|353232645|emb|CCD80000.1| putative ribonuclease III [Schistosoma mansoni]
Length = 1577
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/382 (50%), Positives = 267/382 (69%), Gaps = 7/382 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I+SIHLF +FP++ EG L YR AIVQNQHLA LA R+G+ ++LY H D C
Sbjct: 972 GDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
++ +A ++ FEALM A+ LD G+D+ D++F +VL+ D+E + W+ P HPLQ Q
Sbjct: 1032 YDSTFIYARSDAFEALMAAITLDAGLDIVDRIFGAVLFGDDERIHRVWVQIPLHPLQSQC 1091
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+GDR W + P+LK+L LE + G+ F H+R+LAR T R G+ TLG NQRLEFLG
Sbjct: 1092 PEGDRSWATKVPMLKKLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLG 1151
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA------NIIN 326
D++L+ +++DYL+ HFP HHEGHLSLL++SLVN TQ+ VC+++G+ + + N
Sbjct: 1152 DSLLKYVSTDYLFRHFPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCN 1211
Query: 327 PKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+ +K RADLLEAF+GA+++DK + E+FC++CF+PRL FIL QEWND KSKLQQ
Sbjct: 1212 NSQNQNVKYRADLLEAFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQ 1271
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLT R+L+ +P+I YKV+EH GPTN R Y V VYF+ +RLA G S+QQA+M AAK
Sbjct: 1272 CCLTFRSLN-EDPEIAHYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAK 1330
Query: 447 VALQKCPSICPQLDHQKRVIAK 468
AL+ QLD Q+ VI+K
Sbjct: 1331 KALELHQDTFRQLDFQRSVISK 1352
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD V+++I+S +L+ FPE EGHL R ++V N+ + + +G+ + +
Sbjct: 965 NERLEFLGDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYL-L 1023
Query: 325 INPKVDLKMKD-----RADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
VD R+D EA + A+ +D G++ ++ F
Sbjct: 1024 YTHSVDFCYDSTFIYARSDAFEALMAAITLDAGLDIVDRIFGAVLF 1069
>gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni]
gi|353232644|emb|CCD79999.1| putative ribonuclease III [Schistosoma mansoni]
Length = 1531
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/382 (50%), Positives = 267/382 (69%), Gaps = 7/382 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I+SIHLF +FP++ EG L YR AIVQNQHLA LA R+G+ ++LY H D C
Sbjct: 926 GDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFC 985
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
++ +A ++ FEALM A+ LD G+D+ D++F +VL+ D+E + W+ P HPLQ Q
Sbjct: 986 YDSTFIYARSDAFEALMAAITLDAGLDIVDRIFGAVLFGDDERIHRVWVQIPLHPLQSQC 1045
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+GDR W + P+LK+L LE + G+ F H+R+LAR T R G+ TLG NQRLEFLG
Sbjct: 1046 PEGDRSWATKVPMLKKLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLG 1105
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA------NIIN 326
D++L+ +++DYL+ HFP HHEGHLSLL++SLVN TQ+ VC+++G+ + + N
Sbjct: 1106 DSLLKYVSTDYLFRHFPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCN 1165
Query: 327 PKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+ +K RADLLEAF+GA+++DK + E+FC++CF+PRL FIL QEWND KSKLQQ
Sbjct: 1166 NSQNQNVKYRADLLEAFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQ 1225
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLT R+L+ +P+I YKV+EH GPTN R Y V VYF+ +RLA G S+QQA+M AAK
Sbjct: 1226 CCLTFRSLN-EDPEIAHYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAK 1284
Query: 447 VALQKCPSICPQLDHQKRVIAK 468
AL+ QLD Q+ VI+K
Sbjct: 1285 KALELHQDTFRQLDFQRSVISK 1306
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD V+++I+S +L+ FPE EGHL R ++V N+ + + +G+ + +
Sbjct: 919 NERLEFLGDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYL-L 977
Query: 325 INPKVDLKMKD-----RADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
VD R+D EA + A+ +D G++ ++ F
Sbjct: 978 YTHSVDFCYDSTFIYARSDAFEALMAAITLDAGLDIVDRIFGAVLF 1023
>gi|407262157|ref|XP_001473806.3| PREDICTED: ribonuclease 3-like [Mus musculus]
Length = 1337
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/383 (53%), Positives = 276/383 (72%), Gaps = 12/383 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK ++ + H
Sbjct: 932 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKVSLADNAVPDLHALSEM 991
Query: 153 HEVELKHAMANCFEALM---GALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 209
V L + ++ GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ
Sbjct: 992 EVVSLPQGVLERVTLVLQHPGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQ 1050
Query: 210 EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 269
QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+E
Sbjct: 1051 LQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRME 1110
Query: 270 FLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK- 328
FLGD+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1111 FLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKT 1169
Query: 329 ---VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQ
Sbjct: 1170 KRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQ 1229
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
QCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA
Sbjct: 1230 QCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1288
Query: 446 KVALQKCPSICPQLDHQKRVIAK 468
AL+K PQ+ HQKR I +
Sbjct: 1289 MDALEKY--NFPQMAHQKRFIER 1309
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCN--- 314
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++
Sbjct: 918 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKVSL 977
Query: 315 -DIGMPFFANIINPKV---DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRL 368
D +P + +V + +R L+ GA+Y++ +E +Q F P L
Sbjct: 978 ADNAVPDLHALSEMEVVSLPQGVLERVTLVLQHPGAVYLEGSLEEAKQLFGRLLFNDPDL 1037
Query: 369 QYFILN 374
+ LN
Sbjct: 1038 REVWLN 1043
>gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona
intestinalis]
Length = 1224
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/386 (50%), Positives = 271/386 (70%), Gaps = 10/386 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + TS+HLF +FPD+ EG L T+R +V NQHLA LA+R+ L++FMLYAHG DLC
Sbjct: 828 GDAVVGYFTSVHLFLLFPDLSEGALTTFRTVLVNNQHLALLAERLQLDEFMLYAHGPDLC 887
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ +L+HAMANCFEALMGA++++ G++ A ++F L+ + E + W P H LQE+E
Sbjct: 888 RKADLRHAMANCFEALMGAIYMEAGLERAQRLFGEFLW-ETEALQRVWRSLPLHQLQEEE 946
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P DR+ ++ P+L++L E S GV FNHIRLLA+ FT R++ LT G NQRLEFLG
Sbjct: 947 PVSDRRCIKDVPILQKLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQRLEFLG 1006
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA-----NIINP 327
D+V L+ S YL+ +P HHEGHL+LLR+++VN RTQS+V ++GMP + N
Sbjct: 1007 DSVCNLVASAYLFKLYPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICTLDNDSTE 1066
Query: 328 KV-DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+V + + K+ ADLLEAF+ A++IDKG++ + F K+CFFPRL+ FIL QEWNDPKS LQQ
Sbjct: 1067 RVPEWREKNLADLLEAFVAALFIDKGLKYVKTFMKICFFPRLKEFILTQEWNDPKSCLQQ 1126
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLTLR +G EP +P Y++ GP++SR Y V V+FK E + K TG SIQ+AE NAA+
Sbjct: 1127 CCLTLRQ-EGKEPQLPTYEISHQTGPSHSRKYVVTVHFKGEEIGKGTGESIQRAERNAAR 1185
Query: 447 VALQKCPSICPQLDHQKRVIAKSIEL 472
AL + PQL+ Q+R +A+ +L
Sbjct: 1186 TALNQY--NFPQLEWQRRYVAEKHDL 1209
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 243 IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
IR++AR+ R + + N+RLEFLGD V+ TS +L+ FP+ EG L+ R+
Sbjct: 802 IRIMARLGQQRPVLSP---IEHNERLEFLGDAVVGYFTSVHLFLLFPDLSEGALTTFRTV 858
Query: 303 LVNNRTQSVVCNDIGMPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACE 357
LVNN+ +++ + + F + K DL+ A+ EA +GA+Y++ G+E +
Sbjct: 859 LVNNQHLALLAERLQLDEFMLYAHGPDLCRKADLRHA-MANCFEALMGAIYMEAGLERAQ 917
Query: 358 QF 359
+
Sbjct: 918 RL 919
>gi|358340675|dbj|GAA48519.1| ribonuclease III [Clonorchis sinensis]
Length = 1523
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/414 (47%), Positives = 261/414 (63%), Gaps = 39/414 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I+SIHLF +FP++ EG L YR AIVQNQHLA LA R+G+ F+LY H D C
Sbjct: 929 GDAVIEVISSIHLFFMFPELPEGNLDAYRQAIVQNQHLAELAVRLGIHKFLLYTHSVDFC 988
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
++ +A ++ FEALM A+ LD G+D D++F +VL+ D + W+ P HPLQ Q
Sbjct: 989 YDSTFIYARSDAFEALMAAIALDAGLDEVDRIFGAVLFGDEPRIHRVWVKIPPHPLQSQC 1048
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PDGDR W P+LK+L LE + G+ F H+R+LAR T R G+ T G NQRLEFLG
Sbjct: 1049 PDGDRSWAVNVPMLKKLPILEENLGINFKHLRVLARAMTIRKTGFNFYTFGDNQRLEFLG 1108
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
D++L+ +++DYL+ HFP HHEGHLSLL++SLVN TQ+ VC+++G+ F K
Sbjct: 1109 DSLLKYVSTDYLFRHFPRHHEGHLSLLKNSLVNKYTQAAVCSELGLDQFVIRREDNSTTK 1168
Query: 333 M--------------------------------------KDRADLLEAFLGAMYIDKGME 354
M K RADLLEAF+GA+++DK +
Sbjct: 1169 MDGEGSETGGKCSQQTQPLSSTALSKSSQAAIAAQNQNVKYRADLLEAFIGALFVDKDLT 1228
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
E+FC+VCF+PRL FIL QEWND KSKLQQCCLT R+L +P+I YKV+EH GPTN
Sbjct: 1229 WVERFCQVCFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLH-EDPEIAHYKVLEHSGPTN 1287
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAK 468
R+Y V VYF+ +RLA +G S+QQA+M AAK AL+ QLD Q+ VI+K
Sbjct: 1288 QRTYLVGVYFRGQRLATGSGRSVQQAQMEAAKQALELHQDTFRQLDFQRSVISK 1341
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD V+++I+S +L+ FPE EG+L R ++V N+ + + +G+ F +
Sbjct: 922 NERLEFLGDAVIEVISSIHLFFMFPELPEGNLDAYRQAIVQNQHLAELAVRLGIHKFL-L 980
Query: 325 INPKVDLKMKD-----RADLLEAFLGAMYIDKGMEACEQFCKVCFF---PRL 368
VD R+D EA + A+ +D G++ ++ F PR+
Sbjct: 981 YTHSVDFCYDSTFIYARSDAFEALMAAIALDAGLDEVDRIFGAVLFGDEPRI 1032
>gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis]
gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis]
Length = 917
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 255/358 (71%), Gaps = 4/358 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HLF + PD++EG LAT+R+A+VQN+HLA LAK + L D+M ++HG DLC
Sbjct: 543 GDAVLELICSKHLFFMLPDMDEGHLATFRSALVQNRHLALLAKMLDLSDYMQFSHGPDLC 602
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L HAMANC EAL+GA++L+ G+ VA ++FS + + + ++ + +WM P+H LQ+QE
Sbjct: 603 QEDDLNHAMANCLEALLGAVYLEAGLQVATELFSRLAFTEQDL-YDKWMELPKHRLQDQE 661
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR + SP+L++L E SG+ F HIRLLAR FT +G NLTLG NQRLEFLG
Sbjct: 662 PGGDRHLIGSSPVLQKLVEFEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLG 721
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
D+VLQ + S +LY HFP+HHEGHL+LLRSSLVN+R+Q+ + + + F N V K
Sbjct: 722 DSVLQFVVSVFLYQHFPDHHEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTGPTNVREK 781
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
M AD+LEA + A+++DKG+ E FC+VCFF RL+ I+NQEW D KS+LQQCCL +R
Sbjct: 782 M--LADVLEALIAAVFVDKGLRHVEVFCRVCFFSRLEDSIVNQEWIDSKSQLQQCCLAMR 839
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
T +G PD+PIY++++ GP + + Y V VYF+ R K G+SI QAEM AAK AL+
Sbjct: 840 T-EGKSPDLPIYRILQDAGPAHHKKYQVGVYFQGTRCGKGEGSSIHQAEMAAAKDALE 896
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 18/147 (12%)
Query: 246 LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVN 305
L +V RSM + N+RLEFLGD VL+LI S +L+ P+ EGHL+ RS+LV
Sbjct: 523 LGKVEEDRSM------IRHNERLEFLGDAVLELICSKHLFFMLPDMDEGHLATFRSALVQ 576
Query: 306 NRTQSVVCNDIGMPFFANIINPKVDLKMKDR-----ADLLEAFLGAMYIDKGME-ACEQF 359
NR +++ + + + + DL +D A+ LEA LGA+Y++ G++ A E F
Sbjct: 577 NRHLALLAKMLDLSDYMQFSH-GPDLCQEDDLNHAMANCLEALLGAVYLEAGLQVATELF 635
Query: 360 CKVCFFPRLQYFILNQEWND-PKSKLQ 385
++ F + Y +W + PK +LQ
Sbjct: 636 SRLAFTEQDLY----DKWMELPKHRLQ 658
>gi|410909486|ref|XP_003968221.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Takifugu
rubripes]
Length = 1234
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/318 (59%), Positives = 247/318 (77%), Gaps = 8/318 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 920 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 979
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPL-QEQ 211
E +L+HAMANCFEAL+GA++L+GG++ A Q+F +L+ ++E P+ PL Q Q
Sbjct: 980 RESDLRHAMANCFEALIGAVYLEGGLEEARQLFGRLLF-NSECVAHPLTRXPRXPLLQVQ 1038
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
EP DRQ +E SP+L++L E S GV+F H+RLLAR FT R++G+ +LTLG NQR+EFL
Sbjct: 1039 EPQTDRQLIETSPVLQKLTQFESSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFL 1098
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK--- 328
GD+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1099 GDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKR 1157
Query: 329 -VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQC 387
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQC
Sbjct: 1158 PVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQC 1217
Query: 388 CLTLRTLDGGEPDIPIYK 405
CLTLRT +G EPDIP+YK
Sbjct: 1218 CLTLRT-EGKEPDIPLYK 1234
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 910 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 969
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
+ + DL+ A+ EA +GA+Y++ G+E Q F ++ F
Sbjct: 970 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGGLEEARQLFGRLLF 1017
>gi|339237827|ref|XP_003380468.1| putative RNase3 domain protein [Trichinella spiralis]
gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis]
Length = 1460
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/316 (55%), Positives = 236/316 (74%), Gaps = 7/316 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+T+IHLF++FPD+EEG LA YR +VQN HL+ LA ++GL++FML+AHG DLC
Sbjct: 646 GDAVIEFLTTIHLFYIFPDLEEGALAPYRTLMVQNSHLSKLAAKMGLDEFMLFAHGPDLC 705
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYY--PQHPLQE 210
E +++HAMAN FEA++GA++LDGG+ VAD+VF L+ + + W+++ P+HPLQ+
Sbjct: 706 FEEDMRHAMANAFEAILGAVYLDGGVHVADRVFGRFLFPPDWNQALHWVWFHPPRHPLQQ 765
Query: 211 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 270
+ PDGDR + Q P L++L E GV FNHIRLLAR FT + +GY LTLG NQRLEF
Sbjct: 766 EYPDGDRHLIHQCPTLQKLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEF 825
Query: 271 LGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF-----ANII 325
LGD+VLQL+T++YLY HFP+H EGHLSLLRSSLVNNRTQ+V+C+D+ +P F A +
Sbjct: 826 LGDSVLQLVTTEYLYKHFPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLR 885
Query: 326 NPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
N +L+MKD+ADL+EAFLGA+++D ++ C F + CF PRL+ FI Q W DPKS+LQ
Sbjct: 886 NEPQELRMKDKADLVEAFLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQ 945
Query: 386 QCCLTLRTLDGGEPDI 401
QCCL LR G + +
Sbjct: 946 QCCLALRNPSGAQSTV 961
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 243 IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
+ +++R+ +S + + +N+RLE+LGD V++ +T+ +L+ FP+ EG L+ R+
Sbjct: 620 VNVMSRMGEKKSRASSTV---NNERLEYLGDAVIEFLTTIHLFYIFPDLEEGALAPYRTL 676
Query: 303 LVNNRTQSVVCNDIGMPFFANIIN-PKVDLKMKDR---ADLLEAFLGAMYIDKGMEACEQ 358
+V N S + +G+ F + P + + R A+ EA LGA+Y+D G+ ++
Sbjct: 677 MVQNSHLSKLAAKMGLDEFMLFAHGPDLCFEEDMRHAMANAFEAILGAVYLDGGVHVADR 736
Query: 359 FCKVCFFPRLQYFILNQEW-NDPKSKLQQ 386
FP L+ W + P+ LQQ
Sbjct: 737 VFGRFLFPPDWNQALHWVWFHPPRHPLQQ 765
>gi|390358795|ref|XP_001185802.2| PREDICTED: ribonuclease 3-like, partial [Strongylocentrotus
purpuratus]
Length = 707
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/328 (53%), Positives = 243/328 (74%), Gaps = 10/328 (3%)
Query: 130 LAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
L + +++ L+ +MLYAHG DLC +L+HAMANC EA+MGA++L+ G+D+ ++F +L
Sbjct: 322 LDKINEKLELDKYMLYAHGPDLCRPYDLRHAMANCLEAVMGAIYLEAGLDLCRKIFGKLL 381
Query: 190 YKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARV 249
+++ ++ W+ +P+ PLQ + P+ DR ++ S +L++L E +G+ F HIRLLAR
Sbjct: 382 FEEEYLQ-TIWLNHPKDPLQVRSPETDRHLIKNSEVLQKLTVFEGDTGMRFTHIRLLARA 440
Query: 250 FTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQ 309
FT R++GYTNLT+GSNQRLEFLGD+VLQL+ S YLY HFP HHEGHLSLLRSSLVNN+TQ
Sbjct: 441 FTQRTVGYTNLTMGSNQRLEFLGDSVLQLVVSSYLYKHFPNHHEGHLSLLRSSLVNNKTQ 500
Query: 310 SVVCNDIGMPFFANIINPKV------DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVC 363
S++ D+G+ + II PK ++ MK ADL+EA +GAMY+D G+E FC V
Sbjct: 501 SIIAQDLGLVEY--IIEPKTRSRNENNIPMKIMADLVEALIGAMYVDHGLEVVSTFCSVV 558
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
F+PRL+ FI Q WND KS+LQQCCLTLR ++G EPD+P YKVI GPTNSR Y+VAVY
Sbjct: 559 FYPRLKDFIQTQHWNDAKSQLQQCCLTLR-VEGQEPDVPNYKVIGQSGPTNSRQYSVAVY 617
Query: 424 FKNERLAKATGNSIQQAEMNAAKVALQK 451
FK++R++ T ++I+ AEM AAK AL+K
Sbjct: 618 FKSKRMSTGTASNIRDAEMEAAKNALRK 645
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + S +L+ FP+ EG L+ R+++V N+ + +A+ +GL ++++
Sbjct: 463 GDSVLQLVVSSYLYKHFPNHHEGHLSLLRSSLVNNKTQSIIAQDLGLVEYIIEPKTRSRN 522
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
MA+ EAL+GA+++D G++V S V Y
Sbjct: 523 ENNIPMKIMADLVEALIGAMYVDHGLEVVSTFCSVVFY 560
>gi|341891390|gb|EGT47325.1| hypothetical protein CAEBREN_31838, partial [Caenorhabditis
brenneri]
Length = 704
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 178/375 (47%), Positives = 258/375 (68%), Gaps = 7/375 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + ITS HLF + P EGGLATYR A+VQN++LA LAK +++ + +AHG+DL
Sbjct: 329 GDAVVELITSHHLFFMLPHHFEGGLATYRTALVQNRNLAKLAKSCRMDEMLQFAHGADLI 388
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQEQ 211
+E + KHA+AN FEA+M A++LDGG+ D +FS +Y +N+ KQ W + +H L+ +
Sbjct: 389 NEADFKHALANSFEAVMAAVYLDGGLGPCDIIFSKAMY-ENDPELKQIWDHCNEHELKRE 447
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
+P GDR+ + +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+L
Sbjct: 448 DPLGDRELSQITPALASFHELERRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWL 507
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK--- 328
GD+VLQL+ SD+LY +FP HHEGH+SLLR+SLV+N+TQSVVC+D+G F +I P
Sbjct: 508 GDSVLQLLISDFLYKNFPNHHEGHMSLLRTSLVSNQTQSVVCDDLG--FLEFVIKPPHRV 565
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
+LK+KD+ADL+EAF+GA+Y+D G+E C F ++ F PRL++FI +++WND KS LQQ C
Sbjct: 566 PELKVKDKADLVEAFIGALYVDSGIEHCRAFVRIVFCPRLRHFIESEQWNDAKSHLQQWC 625
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L +R P +P Y+V+ GPTN+R + V VYF+ ERL+ +++ +AE+ AA+ A
Sbjct: 626 LAMRKSRNEMPAMPEYRVLGIEGPTNNRIFRVGVYFRGERLSTGAASNVHKAELKAAESA 685
Query: 449 LQKCPSICPQLDHQK 463
L S+ + K
Sbjct: 686 LADLESVSASRGNSK 700
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 8/99 (8%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LITS +L+ P H EG L+ R++LV NR + + M
Sbjct: 322 NERLEYLGDAVVELITSHHLFFMLPHHFEGGLATYRTALVQNRNLAKLAKSCRMDEMLQF 381
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACE 357
A++IN + D K A+ EA + A+Y+D G+ C+
Sbjct: 382 AHGADLIN-EADFKHA-LANSFEAVMAAVYLDGGLGPCD 418
>gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis]
gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis]
Length = 778
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 184/329 (55%), Positives = 231/329 (70%), Gaps = 18/329 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI-------GLEDFMLY 145
G+ +F++SIHLF +FPD+EEGGLATYRAAIVQNQHLA LAK I +E+ +
Sbjct: 428 GDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVLAKVILHSKVFTHVEELPIS 487
Query: 146 AHGSDLCHEVELKHAMA-------NCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFK 198
H + + +HA A + +GALFLD GI VADQVFS+ L+ + ++
Sbjct: 488 PH---ISFSLPARHAFAIGMLEETSWLFVSLGALFLDSGIRVADQVFSTTLFSEPDL-LG 543
Query: 199 QWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYT 258
W+ YP HPLQEQ P+GDR+W++ PLLK+L E +G+ F HIRLLA+ FT RS+G+
Sbjct: 544 VWVNYPLHPLQEQVPEGDRKWIDSVPLLKKLHEFEELTGIEFTHIRLLAKAFTHRSIGFN 603
Query: 259 NLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM 318
NLTLGSNQRLEFLGDTVLQL+ S+YLY +FPEHHEGHLSLLRSSLVNNRTQ+VVC+D+GM
Sbjct: 604 NLTLGSNQRLEFLGDTVLQLVASEYLYKYFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGM 663
Query: 319 PFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN 378
F PK +LK KDRAD+LE + + +G C + FILNQ+WN
Sbjct: 664 VEFTIYPYPKGELKTKDRADILEGEDTPLSLGQGWMGTSHSCPYILYISSLDFILNQDWN 723
Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
DPKSKLQQCCLTLR++DGGEPDIP+YK +
Sbjct: 724 DPKSKLQQCCLTLRSMDGGEPDIPVYKWV 752
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ YL I I +++R T ++ N+RLEFLGD V++ ++S +L+
Sbjct: 386 RRIHYLNTRKRGINTLINIMSRFGRQEE---TASSISHNERLEFLGDAVVEFLSSIHLFF 442
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDI-GMPFFANI----INPKVDLKMKDR----- 336
FP+ EG L+ R+++V N+ +V+ I F ++ I+P + + R
Sbjct: 443 MFPDLEEGGLATYRAAIVQNQHLAVLAKVILHSKVFTHVEELPISPHISFSLPARHAFAI 502
Query: 337 -----ADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
L LGA+++D G+ +Q F
Sbjct: 503 GMLEETSWLFVSLGALFLDSGIRVADQVFSTTLF 536
>gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans
Length = 412
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/366 (47%), Positives = 252/366 (68%), Gaps = 3/366 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL
Sbjct: 26 GDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLI 85
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E KHA+AN FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++
Sbjct: 86 NVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKRED 145
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 146 PQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLG 205
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP--KVD 330
D+VLQLI SD+LY FP HHEGH+SLLR+SLV+N+TQ+VVC+D+G F I P +
Sbjct: 206 DSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYKTPE 264
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LK+KD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL
Sbjct: 265 LKLKDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLA 324
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+R EPD+P Y+V+ GPTN+R + +AVY+K +RLA A +++ +AE+ A++AL
Sbjct: 325 MRDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALA 384
Query: 451 KCPSIC 456
S+
Sbjct: 385 NLESMS 390
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCND------IGM 318
N+RLE+LGD V++LI S +LY H EG L+ R++LV NR + + + +
Sbjct: 19 NERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQY 78
Query: 319 PFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYF---ILNQ 375
A++IN V A+ EA + A+Y+D G+ C+ F + Y +L +
Sbjct: 79 SHGADLIN--VAEFKHALANAFEAVMAAIYLDGGLAPCD-----VIFSKAMYGHQPVLKE 131
Query: 376 EWN 378
+W+
Sbjct: 132 KWD 134
>gi|444725571|gb|ELW66134.1| Ribonuclease 3 [Tupaia chinensis]
Length = 1199
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 194/382 (50%), Positives = 259/382 (67%), Gaps = 42/382 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK--RIGLEDFMLYAHGSD 150
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK RI E F++ H
Sbjct: 826 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKVYRIS-EAFVVNVHLYY 884
Query: 151 LCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
L +E +GG+ + + + ++ + +
Sbjct: 885 LFPSLE------------------EGGL----ATYRTAIVQNQHLAMLAKL--------- 913
Query: 211 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 270
QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EF
Sbjct: 914 QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEF 973
Query: 271 LGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK-- 328
LGD+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 974 LGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTK 1032
Query: 329 --VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQ
Sbjct: 1033 RPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQ 1092
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA
Sbjct: 1093 CCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAM 1151
Query: 447 VALQKCPSICPQLDHQKRVIAK 468
AL+K PQ+ HQKR I +
Sbjct: 1152 DALEKY--NFPQMAHQKRFIER 1171
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 72 GVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLA 131
G+ + +++Q + M F+ ++HL+++FP +EEGGLATYR AIVQNQHLA
Sbjct: 849 GLATYRTAIVQNQHLAMLAKVYRISEAFVVNVHLYYLFPSLEEGGLATYRTAIVQNQHLA 908
Query: 132 HLAK 135
LAK
Sbjct: 909 MLAK 912
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNN 306
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N
Sbjct: 812 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQN 860
>gi|341898331|gb|EGT54266.1| hypothetical protein CAEBREN_32072 [Caenorhabditis brenneri]
Length = 829
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/366 (47%), Positives = 253/366 (69%), Gaps = 5/366 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + ITS HLF + P EGGLATYR A+VQN++LA LAK +++ + +AHG+DL
Sbjct: 430 GDAVVELITSHHLFFMLPHHFEGGLATYRTALVQNRNLAKLAKSCRMDEMLQFAHGADLI 489
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+E + KHA+AN FEA+M A++LDGG+ D +FS +Y + + W + +H L+ ++
Sbjct: 490 NEADFKHALANSFEAVMAAVYLDGGLGPCDTIFSKAMYGSDPELKQIWDHCNEHELRRED 549
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+ + +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 550 PLGDRELSQITPALASFHELERRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWLG 609
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---V 329
D+VLQL+ SD+LY +FP HHEGH+SLLR+SLV+N+TQSVVC+D+G F +I P
Sbjct: 610 DSVLQLLISDFLYKNFPNHHEGHMSLLRTSLVSNQTQSVVCDDLG--FLEFVIKPPHRVP 667
Query: 330 DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCL 389
+LK+KD+ADL+EAF+GA+Y+D G+E C F ++ F PRL++FI +++WND KS LQQ CL
Sbjct: 668 ELKVKDKADLVEAFIGALYVDSGIEHCRAFVRIVFCPRLRHFIESEQWNDAKSHLQQWCL 727
Query: 390 TLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+R P +P Y+V+ GPTN+R + V VYF+ ERL+ +++ +AE+ AA+ AL
Sbjct: 728 AMRKSRNEMPAMPEYRVLGIEGPTNNRIFRVGVYFRGERLSTGAASNVHKAELKAAESAL 787
Query: 450 QKCPSI 455
S+
Sbjct: 788 ADLESV 793
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 8/99 (8%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LITS +L+ P H EG L+ R++LV NR + + M
Sbjct: 423 NERLEYLGDAVVELITSHHLFFMLPHHFEGGLATYRTALVQNRNLAKLAKSCRMDEMLQF 482
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACE 357
A++IN + D K A+ EA + A+Y+D G+ C+
Sbjct: 483 AHGADLIN-EADFKHA-LANSFEAVMAAVYLDGGLGPCD 519
>gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
Length = 1073
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/360 (47%), Positives = 251/360 (69%), Gaps = 5/360 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + P EGGLATYR A+VQN++LA LAK +++ + YAHG+DL
Sbjct: 685 GDAVVELIVSHHLYFMLPHHFEGGLATYRTALVQNRNLADLAKNCRIDEMLQYAHGADLI 744
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+E E KHA+AN FEA++ A++LDGG+ D++FS +Y K W + +H L+ ++
Sbjct: 745 NEAEWKHALANAFEAVVAAVYLDGGLGACDRLFSKAMYGSAPNLKKVWDHINEHELKRED 804
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR+ +P L LE + FN+IRLLA+ FT R++ + +LT G NQRLE+LG
Sbjct: 805 PLGDRELSNITPALASFHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLG 864
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---V 329
D+VLQL+ SDYL+ +P HHEGH+SLLR+SLV+N+TQSVVC+D+G F ++ P
Sbjct: 865 DSVLQLVVSDYLFRRYPLHHEGHMSLLRTSLVSNQTQSVVCDDLG--FLEFVVKPPHKTP 922
Query: 330 DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCL 389
+LKMKD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL
Sbjct: 923 ELKMKDKADLVEAFIGALYVDRGIEHCRSFIRIVFCPRLKHFINSEQWNDAKSHLQQWCL 982
Query: 390 TLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+R P +P Y+++ GPTN+R + V VYF+ +RLA A +++ +AE+ AA++AL
Sbjct: 983 AIRDAQNPNPAMPDYRILSIEGPTNNRIFKVGVYFRGKRLASAAESNVHKAELKAAEIAL 1042
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LI S +LY P H EG L+ R++LV NR + + + +
Sbjct: 678 NERLEYLGDAVVELIVSHHLYFMLPHHFEGGLATYRTALVQNRNLADLAKNCRIDEMLQY 737
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
A++IN + + K A+ EA + A+Y+D G+ AC++ F K +
Sbjct: 738 AHGADLIN-EAEWKHA-LANAFEAVVAAVYLDGGLGACDRLFSKAMY 782
>gi|17506883|ref|NP_492599.1| Protein DRSH-1, isoform a [Caenorhabditis elegans]
gi|20141625|sp|O01326.2|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
Full=Ribonuclease III; Short=RNase III
gi|15718161|emb|CAB03006.3| Protein DRSH-1, isoform a [Caenorhabditis elegans]
Length = 1086
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 174/365 (47%), Positives = 252/365 (69%), Gaps = 3/365 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL
Sbjct: 697 GDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLI 756
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E KHA+AN FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++
Sbjct: 757 NVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKRED 816
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 817 PQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLG 876
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP--KVD 330
D+VLQLI SD+LY FP HHEGH+SLLR+SLV+N+TQ+VVC+D+G F I P +
Sbjct: 877 DSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYKTPE 935
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LK+KD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL
Sbjct: 936 LKLKDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLA 995
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+R EPD+P Y+V+ GPTN+R + +AVY+K +RLA A +++ +AE+ A++AL
Sbjct: 996 MRDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALA 1055
Query: 451 KCPSI 455
S+
Sbjct: 1056 NLESM 1060
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LI S +LY H EG L+ R++LV NR + + + +
Sbjct: 690 NERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQY 749
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYF---ILNQ 375
A++IN V A+ EA + A+Y+D G+ C+ F + Y +L +
Sbjct: 750 SHGADLIN--VAEFKHALANAFEAVMAAIYLDGGLAPCD-----VIFSKAMYGHQPVLKE 802
Query: 376 EWN 378
+W+
Sbjct: 803 KWD 805
>gi|392886816|ref|NP_001122460.2| Protein DRSH-1, isoform b [Caenorhabditis elegans]
gi|358246433|emb|CAP19331.2| Protein DRSH-1, isoform b [Caenorhabditis elegans]
Length = 1081
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 174/365 (47%), Positives = 252/365 (69%), Gaps = 3/365 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL
Sbjct: 695 GDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLI 754
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E KHA+AN FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++
Sbjct: 755 NVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKRED 814
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 815 PQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLG 874
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP--KVD 330
D+VLQLI SD+LY FP HHEGH+SLLR+SLV+N+TQ+VVC+D+G F I P +
Sbjct: 875 DSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYKTPE 933
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LK+KD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL
Sbjct: 934 LKLKDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLA 993
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+R EPD+P Y+V+ GPTN+R + +AVY+K +RLA A +++ +AE+ A++AL
Sbjct: 994 MRDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALA 1053
Query: 451 KCPSI 455
S+
Sbjct: 1054 NLESM 1058
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LI S +LY H EG L+ R++LV NR + + + +
Sbjct: 688 NERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQY 747
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYF---ILNQ 375
A++IN V A+ EA + A+Y+D G+ C+ F + Y +L +
Sbjct: 748 SHGADLIN--VAEFKHALANAFEAVMAAIYLDGGLAPCD-----VIFSKAMYGHQPVLKE 800
Query: 376 EWN 378
+W+
Sbjct: 801 KWD 803
>gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans]
Length = 860
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 174/365 (47%), Positives = 252/365 (69%), Gaps = 3/365 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL
Sbjct: 471 GDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLI 530
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E KHA+AN FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++
Sbjct: 531 NVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKRED 590
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 591 PQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLG 650
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP--KVD 330
D+VLQLI SD+LY FP HHEGH+SLLR+SLV+N+TQ+VVC+D+G F I P +
Sbjct: 651 DSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYKTPE 709
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LK+KD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL
Sbjct: 710 LKLKDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLA 769
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+R EPD+P Y+V+ GPTN+R + +AVY+K +RLA A +++ +AE+ A++AL
Sbjct: 770 MRDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALA 829
Query: 451 KCPSI 455
S+
Sbjct: 830 NLESM 834
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LI S +LY H EG L+ R++LV NR + + + +
Sbjct: 464 NERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQY 523
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYF---ILNQ 375
A++IN V A+ EA + A+Y+D G+ C+ F + Y +L +
Sbjct: 524 SHGADLIN--VAEFKHALANAFEAVMAAIYLDGGLAPCD-----VIFSKAMYGHQPVLKE 576
Query: 376 EWN 378
+W+
Sbjct: 577 KWD 579
>gi|432930273|ref|XP_004081406.1| PREDICTED: ribonuclease 3-like [Oryzias latipes]
Length = 1306
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 201/426 (47%), Positives = 261/426 (61%), Gaps = 85/426 (19%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 888 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 947
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+GG+D A +F +L+ ++R + W+ YP HPLQ QE
Sbjct: 948 RESDLRHAMANCFEALIGAVYLEGGLDEARLLFGRLLFNSEDLR-EVWLNYPAHPLQVQE 1006
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P DRQ +E SP+L++L E S GV F H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1007 PQTDRQLIETSPVLQKLTSFEDSIGVFFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1066
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA I N K
Sbjct: 1067 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1125
Query: 329 VDLKMKDRADLLEA---------------FLGAMYIDKGMEAC----------------- 356
V L+ K ADLLE G + G E C
Sbjct: 1126 VALRTKTLADLLECTSRPVSPCTTLFTDLLSGRLPNSGGAELCVMVAARAHLISTSKREV 1185
Query: 357 --------EQFCKV------CFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F K+ CF + FILNQ+WNDPKS+LQQCCLTLRT +G EPDIP
Sbjct: 1186 VKQPARLLAAFWKLQCPTLRCF---ISEFILNQDWNDPKSQLQQCCLTLRT-EGKEPDIP 1241
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQ 462
+YK+ A G S Q+A AA V L+ PQ+ HQ
Sbjct: 1242 LYKL-------------------------ALGFSEQEAAARAA-VMLK---DNFPQMAHQ 1272
Query: 463 KRVIAK 468
KR I +
Sbjct: 1273 KRFIER 1278
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 878 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 937
Query: 322 -----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGME 354
+ + DL+ A+ EA +GA+Y++ G++
Sbjct: 938 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGGLD 974
>gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae]
gi|74847096|sp|Q61XX9.1|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
Full=Ribonuclease III; Short=RNase III
Length = 1061
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 244/352 (69%), Gaps = 3/352 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HLF + EGGLATYR A+VQN++LA LA +++ + +AHG+DL
Sbjct: 675 GDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQFAHGADLI 734
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
+E E KHA+AN FEALM +FLD GI D +FS +Y KD E++ K W + +H L+ +
Sbjct: 735 NEAEWKHALANAFEALMAGVFLDSGIAPCDAIFSKAMYGKDPEMK-KVWDHLNEHELKIE 793
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
+P GDR +P L LE G+ FN+IRLLA+ FT R++ + +LT G NQRLE+L
Sbjct: 794 DPLGDRDLSRITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWL 853
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM-PFFANIINPKVD 330
GD+VLQLI SDYLY +FP HHEGH+SLLR+SLV+N+TQSVVC+D+G F + K D
Sbjct: 854 GDSVLQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPHRKND 913
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LKMKD+ADL+EAF+GA+Y+DKG+E C F + F PRL++FI +++WND KS LQQ CL
Sbjct: 914 LKMKDKADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLA 973
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEM 442
+R P +P Y+++ GPTN+R + VAVYF+ ERL+ A +++ AE+
Sbjct: 974 IRDSRNPNPAMPEYRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAEL 1025
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVV---CNDIGMPFF 321
N+RLE+LGD V++LI S +L+ H EG L+ R++LV NR + + C M F
Sbjct: 668 NERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQF 727
Query: 322 ANIINPKVDLKMKDR-ADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
A+ + + + K A+ EA + +++D G+ C+ F K +
Sbjct: 728 AHGADLINEAEWKHALANAFEALMAGVFLDSGIAPCDAIFSKAMY 772
>gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica]
Length = 538
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 163/363 (44%), Positives = 246/363 (67%), Gaps = 8/363 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ S+ +FH+FP++ EG L+ R A+V N HLA LA+++ LED+ +Y H DL
Sbjct: 76 GDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYIHSQDLA 135
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+L +A+ANCFEA++GA+++DGG++ Q+ + VL+ D ++ + W+ +P HPLQ++
Sbjct: 136 KREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLFDDKALQ-RVWLDFPAHPLQQEY 194
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PDGDR +E S +LK+ LE GV F +IRLLA+ T +++ Y ++T G NQRLEFLG
Sbjct: 195 PDGDRAQIESSKVLKRCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLG 254
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA----NIINPK 328
D + + ++YL+ HFP HHEGHL+LLR ++V TQ++V IG+ F ++ + K
Sbjct: 255 DAICNFLAAEYLFKHFPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDK 314
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
+ K K ADL+E+F+GA++ID+G+ A + F KV F+PRL++FI++Q WNDPKS LQQCC
Sbjct: 315 MGWKQKILADLMESFIGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCC 374
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLR + G PD+P Y+ ++ Y V V+F+ ER+ + G SIQ AE AA+ A
Sbjct: 375 LTLRP-EEGTPDLPEYRTT--TSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKA 431
Query: 449 LQK 451
L+K
Sbjct: 432 LEK 434
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
+R EFLGD VL + S +++ FP EG LS+LR +LV N + + + + + I
Sbjct: 70 ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYI 129
Query: 326 NPKVDLKMKD----RADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND-P 380
+ + K +D A+ EA LGA+Y+D G+E Q F L + W D P
Sbjct: 130 HSQDLAKREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLF---DDKALQRVWLDFP 186
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNER-LAKA 432
LQQ DG I KV++ + V FKN R LAKA
Sbjct: 187 AHPLQQ-----EYPDGDRAQIESSKVLKRCAELEE---LLGVKFKNIRLLAKA 231
>gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica]
Length = 1096
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/363 (44%), Positives = 246/363 (67%), Gaps = 8/363 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ S+ +FH+FP++ EG L+ R A+V N HLA LA+++ LED+ +Y H DL
Sbjct: 634 GDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYIHSQDLA 693
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+L +A+ANCFEA++GA+++DGG++ Q+ + VL+ D ++ + W+ +P HPLQ++
Sbjct: 694 KREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLFDDKALQ-RVWLDFPAHPLQQEY 752
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PDGDR +E S +LK+ LE GV F +IRLLA+ T +++ Y ++T G NQRLEFLG
Sbjct: 753 PDGDRAQIESSKVLKRCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLG 812
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA----NIINPK 328
D + + ++YL+ HFP HHEGHL+LLR ++V TQ++V IG+ F ++ + K
Sbjct: 813 DAICNFLAAEYLFKHFPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDK 872
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
+ K K ADL+E+F+GA++ID+G+ A + F KV F+PRL++FI++Q WNDPKS LQQCC
Sbjct: 873 MGWKQKILADLMESFIGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCC 932
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLR + G PD+P Y+ ++ Y V V+F+ ER+ + G SIQ AE AA+ A
Sbjct: 933 LTLRP-EEGTPDLPEYRTT--TSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKA 989
Query: 449 LQK 451
L+K
Sbjct: 990 LEK 992
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
+R EFLGD VL + S +++ FP EG LS+LR +LV N + + + + + I
Sbjct: 628 ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYI 687
Query: 326 NPKVDLKMKD----RADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND-P 380
+ + K +D A+ EA LGA+Y+D G+E Q F L + W D P
Sbjct: 688 HSQDLAKREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLFDDK---ALQRVWLDFP 744
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNER-LAKA 432
LQQ DG I KV++ + V FKN R LAKA
Sbjct: 745 AHPLQQ-----EYPDGDRAQIESSKVLKRCAELEE---LLGVKFKNIRLLAKA 789
>gi|432104658|gb|ELK31270.1| Ribonuclease 3 [Myotis davidii]
Length = 1225
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 161/273 (58%), Positives = 208/273 (76%), Gaps = 9/273 (3%)
Query: 200 WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN 259
W+ YP HPLQ + P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +
Sbjct: 930 WLNYPLHPLQVK-PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNH 988
Query: 260 LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP 319
LTLG NQR+EFLGD+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM
Sbjct: 989 LTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQ 1048
Query: 320 FFANIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ 375
+A I N K V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ
Sbjct: 1049 EYA-ITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQ 1107
Query: 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGN 435
+WNDPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G
Sbjct: 1108 DWNDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGP 1166
Query: 436 SIQQAEMNAAKVALQKCPSICPQLDHQKRVIAK 468
SIQQAEM AA AL+K PQ+ HQKR I +
Sbjct: 1167 SIQQAEMGAAMDALEKY--NFPQMAHQKRFIER 1197
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 101 TSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK 135
+S+HL+++FP +EEGGLATYR AIVQNQHLA LAK
Sbjct: 890 SSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK 924
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + + +LF FPD EG L R+++V N+ A +A+ +G++++ + +
Sbjct: 1001 GDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRP 1060
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ K +A+ E+ + AL++D ++
Sbjct: 1061 VALRTK-TLADLLESFIAALYIDKDLE 1086
>gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus]
Length = 288
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 156/263 (59%), Positives = 201/263 (76%), Gaps = 8/263 (3%)
Query: 211 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 270
QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EF
Sbjct: 3 QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEF 62
Query: 271 LGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK-- 328
LGD+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 63 LGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTK 121
Query: 329 --VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQ
Sbjct: 122 RPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQ 181
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA
Sbjct: 182 CCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAM 240
Query: 447 VALQKCPSICPQLDHQKRVIAKS 469
AL+K PQ+ HQKR I +
Sbjct: 241 DALEKYN--FPQMAHQKRFIERE 261
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + + +LF FPD EG L R+++V N+ A +A+ +G++++ + +
Sbjct: 64 GDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRP 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ K +A+ E+ + AL++D ++
Sbjct: 124 VALRTK-TLADLLESFIAALYIDKDLE 149
>gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax]
Length = 1569
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 186/239 (77%), Gaps = 6/239 (2%)
Query: 200 WMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN 259
W+ +P HPLQ QEP DRQ +E SP+L++L E S GV+F H+RLLAR FT R++G+ +
Sbjct: 1331 WLNFPPHPLQVQEPQTDRQLIETSPVLQKLTSFEDSIGVLFTHVRLLARAFTLRTVGFNH 1390
Query: 260 LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP 319
LTLG NQR+EFLGD+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM
Sbjct: 1391 LTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQ 1450
Query: 320 FFANIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ 375
FA I N K V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ
Sbjct: 1451 DFA-ITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQ 1509
Query: 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG 434
+WNDPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G
Sbjct: 1510 DWNDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG 1567
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 69/89 (77%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 1032 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1091
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E +L+HAMANCFEAL+ L +A
Sbjct: 1092 RESDLRHAMANCFEALIEHFLLTRQTQIA 1120
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + + +LF FPD EG L R+++V N+ A +A+ +G++DF + +
Sbjct: 1403 GDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFAITNDKTKRP 1462
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ K +A+ E+ + AL++D ++
Sbjct: 1463 VALRTK-TLADLLESFIAALYIDKDLE 1488
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 1022 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 1081
>gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens]
Length = 1192
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 185/226 (81%), Gaps = 1/226 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 935 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 994
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 995 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1053
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1054 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1113
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM 318
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM
Sbjct: 1114 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 921 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 980
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 981 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1039
Query: 371 FILN 374
LN
Sbjct: 1040 VWLN 1043
>gi|47225092|emb|CAF98719.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/211 (60%), Positives = 161/211 (76%), Gaps = 8/211 (3%)
Query: 263 GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA 322
G NQR+EFLGD+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM FA
Sbjct: 58 GHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA 117
Query: 323 NIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN 378
I N K V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WN
Sbjct: 118 -ITNDKTKRPVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN 176
Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
DPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK +R+ G SIQ
Sbjct: 177 DPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGDRIGCGKGPSIQ 235
Query: 439 QAEMNAAKVALQKCPSICPQLDHQKRVIAKS 469
QAEM AA AL+K PQ+ HQKR I +
Sbjct: 236 QAEMGAAMDALEK--YNFPQMAHQKRFIERK 264
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 43 FSTGAWQEADGQFLVTWASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
+ GA + G +L S C+ T G + + + M G++ Q + +
Sbjct: 18 YHIGALAQVAGLYLPRLGSMGRCDVTSSPGQLKGKPTACSGHNQRMEF-LGDSIMQLVAT 76
Query: 103 IHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMA 162
+LF FPD EG L R+++V N+ A +A+ +G+++F + + + K +A
Sbjct: 77 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVVLRTK-TLA 135
Query: 163 NCFEALMGALFLDGGID 179
+ E+ + AL++D ++
Sbjct: 136 DLLESFIAALYIDKDLE 152
>gi|427794217|gb|JAA62560.1| Putative ribonuclease, partial [Rhipicephalus pulchellus]
Length = 1087
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 140/170 (82%), Gaps = 1/170 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FPD+EEGGLATYRAAIVQNQHLA LAK++ LE +MLYAHGSDLC
Sbjct: 919 GDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVLAKKLELEKYMLYAHGSDLC 978
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
H++EL+HAMANCFEALMGALFLD GI VAD+VFSS L+ + ++R W+ YP HPLQEQ
Sbjct: 979 HDLELRHAMANCFEALMGALFLDSGIKVADRVFSSTLFSEPDLR-DVWINYPPHPLQEQV 1037
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTL 262
P+GDR+W+ PLLK+L E +G+ FNHIRLLA+ FT RS+G+ NLTL
Sbjct: 1038 PEGDRKWISTVPLLKKLNEFEQLTGIEFNHIRLLAKAFTHRSIGFNNLTL 1087
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ YL I I +++R T ++G N+RLEFLGD V++ ++S +L+
Sbjct: 877 RRIHYLNTRKRGINTLINIMSRFGRQEE---TASSIGHNERLEFLGDAVVEFLSSIHLFF 933
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR-ADLLEA 342
FP+ EG L+ R+++V N+ +V+ + + +A+ + DL+++ A+ EA
Sbjct: 934 MFPDLEEGGLATYRAAIVQNQHLAVLAKKLELEKYMLYAHGSDLCHDLELRHAMANCFEA 993
Query: 343 FLGAMYIDKGMEACEQFCKVCFF 365
+GA+++D G++ ++ F
Sbjct: 994 LMGALFLDSGIKVADRVFSSTLF 1016
>gi|341891365|gb|EGT47300.1| CBN-DRSH-1 protein [Caenorhabditis brenneri]
Length = 1003
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/226 (51%), Positives = 163/226 (72%), Gaps = 2/226 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + ITS HLF + P EGGLATYR A+VQN++LA LAK +++ + +AHG+DL
Sbjct: 726 GDAVVELITSHHLFFMLPHHFEGGLATYRTALVQNRNLAKLAKSCRMDEMLQFAHGADLI 785
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQEQ 211
+E + KHA+AN FEA+M A++LDGG+ D +FS +Y N+ KQ W + +H L+ +
Sbjct: 786 NEADFKHALANSFEAVMAAVYLDGGLGPCDTIFSKAMY-GNDPELKQIWDHCNEHELRRE 844
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
+P GDR+ + +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+L
Sbjct: 845 DPLGDRELSQITPALASFHELERRLGIQFNNIRLLAKAFTRRNVPNNDLTKGHNQRLEWL 904
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
GD+VLQL+ SD+LY +FP HHEGH+SLLR+SLV+N+TQSVVC+D+G
Sbjct: 905 GDSVLQLLISDFLYKNFPNHHEGHMSLLRTSLVSNQTQSVVCDDLG 950
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LITS +L+ P H EG L+ R++LV NR + + M
Sbjct: 719 NERLEYLGDAVVELITSHHLFFMLPHHFEGGLATYRTALVQNRNLAKLAKSCRMDEMLQF 778
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
A++IN + D K A+ EA + A+Y+D G+ C+ F K +
Sbjct: 779 AHGADLIN-EADFKHA-LANSFEAVMAAVYLDGGLGPCDTIFSKAMY 823
>gi|340378479|ref|XP_003387755.1| PREDICTED: ribonuclease 3-like [Amphimedon queenslandica]
Length = 349
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 197/353 (55%), Gaps = 13/353 (3%)
Query: 108 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 167
+FP + L +R A++ NQ+LA +AKRI LE ++L ++ H AN EA
Sbjct: 1 MFPSFTDSHLVIFRKALICNQNLATVAKRIHLEKYLLMDVN---FKNADINHIYANTLEA 57
Query: 168 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 227
L+GA++ D I+ + V +++L+ + ++R W+ + LQ DGDR V + P+L
Sbjct: 58 LIGAVYKDSDINTSSIVLATLLFPEEDLR-GIWLSEYKDQLQVDSTDGDRHMVNEYPILN 116
Query: 228 QLQY--LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+ + LE S GV F +IRLLAR FT S G T+L +G QR+EFLGD +LQ +TSDY+Y
Sbjct: 117 VISFNKLEESIGVRFTNIRLLARAFTHPSYGCTDLLIGDYQRMEFLGDAILQFLTSDYVY 176
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ FP HHEGHLS R+++V+N+ + V ++G P + + K ADL+E+F+
Sbjct: 177 DTFPLHHEGHLSTFRTAIVHNKQLAEVSVELGFPQHLLLGKDQTVTNFKVHADLIESFIT 236
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+DKGME FCKVC FP+L ++ D K++LQ + + + PIY
Sbjct: 237 ALYLDKGMEHVLMFCKVCLFPKLASSAKGLKFLDSKTRLQHAVVYTCKKEKTPIEFPIYS 296
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQ 458
+ V VYF+ R+A TG S Q A MNAA+ L I P
Sbjct: 297 KAMLLP-------LVGVYFRGRRIATGTGGSSQNAGMNAAEKGLDSRYIIVPN 342
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ QF+TS +++ FP EG L+T+R AIV N+ LA ++ +G +L G D
Sbjct: 163 GDAILQFLTSDYVYDTFPLHHEGHLSTFRTAIVHNKQLAEVSVELGFPQHLLL--GKD-- 218
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
V A+ E+ + AL+LD G++
Sbjct: 219 QTVTNFKVHADLIESFITALYLDKGME 245
>gi|440804445|gb|ELR25322.1| ribonuclease III, putative [Acanthamoeba castellanii str. Neff]
Length = 805
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 209/367 (56%), Gaps = 19/367 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +FI S HLF P +EG L+ YR+ +V N+ LA+L +R+ L++ + YA ++L
Sbjct: 449 GDAVLEFICSAHLFTQLPQHDEGPLSQYRSGLVNNRFLAYLTQRLHLDEQLCYADVAELT 508
Query: 153 H--EVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ-WMYYPQHPLQ 209
+ ++ +A+ FEAL+GAL+LD G++ + F+ L+ ++E ++ W+ HPLQ
Sbjct: 509 QGGKEGRRNMLADSFEALIGALYLDQGLEACREFFAGCLFSESEADLRRMWLQPCAHPLQ 568
Query: 210 EQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQR 267
E DR +E SP++K LE +G+ F HIRLL + FT S+ L LG++QR
Sbjct: 569 EGP--SDRHLIEASPIMKGYTKLEEQTGIEFKHIRLLVQAFTHSSLTDDCDTLKLGTSQR 626
Query: 268 LEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM-PFFANIIN 326
LEFLGD VLQ + + LY H+P+ +EG L+ R +LVNN+ + D+G PF + +
Sbjct: 627 LEFLGDAVLQYVVTACLYAHYPDQNEGQLTQYRVALVNNQVLGRIGKDLGFGPFIRYLPS 686
Query: 327 PKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKL 384
K + D AD +EAF+GA++++KG+E E F +V F PRL+ + +++ DPKS+L
Sbjct: 687 TKEQTGVTDSMIADCVEAFIGALFLEKGLEVVEAFVRVVFLPRLEDMLATRQYLDPKSRL 746
Query: 385 QQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNA 444
Q + P Y ++ GP + R + V V + K +G + AE NA
Sbjct: 747 SQRHRSA---------PPTYTLLSETGPAHMRKFVVGVTVRGRLKGKGSGYTRVSAEQNA 797
Query: 445 AKVALQK 451
A AL +
Sbjct: 798 ANDALSR 804
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FF 321
NQRLE+LGD VL+ I S +L+ P+H EG LS RS LVNNR + + + + +
Sbjct: 442 NQRLEYLGDAVLEFICSAHLFTQLPQHDEGPLSQYRSGLVNNRFLAYLTQRLHLDEQLCY 501
Query: 322 ANIINPKVDLKMKDR---ADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
A++ K R AD EA +GA+Y+D+G+EAC +F C F
Sbjct: 502 ADVAELTQGGKEGRRNMLADSFEALIGALYLDQGLEACREFFAGCLF 548
>gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta]
Length = 174
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 141/175 (80%), Gaps = 1/175 (0%)
Query: 108 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 167
+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC E +L+HAMANCFEA
Sbjct: 1 LFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEA 60
Query: 168 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 227
L+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QEP+ DRQ +E SP+L+
Sbjct: 61 LIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQEPNTDRQLIETSPVLQ 119
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
+L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLGD+++QL+ ++
Sbjct: 120 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE 174
>gi|449662730|ref|XP_004205600.1| PREDICTED: uncharacterized protein LOC101234889 [Hydra
magnipapillata]
Length = 1195
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 159/277 (57%), Gaps = 15/277 (5%)
Query: 205 QHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTL 262
Q +Q + GDR ++ S L++ LE GV F HI LL + T G + +T
Sbjct: 888 QRLIQIEYESGDRHLIKDSLTLQKFVTLEKKIGVEFTHISLLVKALTHSVKGLDDETITR 947
Query: 263 GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA 322
G+ ++LEFLGD +L+ I SDYLY HFP H EGHL+LLR SL+N + + +I + +
Sbjct: 948 GNYEQLEFLGDAILKYICSDYLYKHFPNHQEGHLTLLRISLINLKCLAKASEEIDLIKYI 1007
Query: 323 NIINPKVD---LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ +P + K +D+ EAFL A+++DKG+ C++ +VC RL+ FIL+Q+W +
Sbjct: 1008 -VFHPNHEPSTTNEKTFSDVFEAFLAALHLDKGLLHCQKLIEVCILSRLKEFILSQDWLE 1066
Query: 380 PKSKLQQCCLTLRTLDGGEPDI---PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
PKS+LQQCC T + +PD P+YK I+ +++ V VYF +RL G S
Sbjct: 1067 PKSQLQQCCNTY--YNKTKPDKVEHPVYKRIKLSTINGVQNFKVGVYFNGKRLGTGQGRS 1124
Query: 437 IQQAEMNAAKVALQKCPSICPQLDH-QKRVIAKSIEL 472
++AE AAK AL K +L H QK +I+K +L
Sbjct: 1125 RKEAEKEAAKSALSKN---YFELQHRQKNIISKRYQL 1158
>gi|357604604|gb|EHJ64254.1| putative ribonuclease iii [Danaus plexippus]
Length = 275
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 102/125 (81%)
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
+E C+ FC C FPRLQ FI+NQ+WNDPKSKLQQCCLTLR+++GGEPDIP+YKVIE +G
Sbjct: 39 NLEYCQVFCNACLFPRLQEFIMNQDWNDPKSKLQQCCLTLRSVEGGEPDIPVYKVIECLG 98
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIE 471
PTN+R YTV VYF+ RLA A G+SIQ+AEMNAA+ AL + PQLDHQKRVIAKS+
Sbjct: 99 PTNTRVYTVGVYFRGSRLAAARGHSIQEAEMNAAEEALNSAQELFPQLDHQKRVIAKSMR 158
Query: 472 LQKHE 476
+K++
Sbjct: 159 KKKNK 163
>gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
Length = 190
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 119/191 (62%), Gaps = 2/191 (1%)
Query: 108 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 167
+FPD+ EG L+ YR+A+V N+ L L K++ L++F+ Y+H + L ++AN EA
Sbjct: 1 MFPDLSEGDLSVYRSALVNNKQLGRLGKKLKLDEFLAYSH--EALKNNNLDRSIANGVEA 58
Query: 168 LMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLK 227
L GA++L+ G+D ++F + + D+ WM HPLQEQ PDGDR + +S L+
Sbjct: 59 LFGAMYLENGLDRVREIFGKLTFDDDSELMGTWMNLVTHPLQEQFPDGDRILIPKSQFLQ 118
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
L E S GV F HIRLLA+ FT S G +LT+G QRLEFLGD +L + + ++Y
Sbjct: 119 GLTDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVYRQ 178
Query: 288 FPEHHEGHLSL 298
FP + EGHLS+
Sbjct: 179 FPHYREGHLSV 189
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--ADLLEAFLG 345
FP+ EG LS+ RS+LVNN+ + + + F + + DR A+ +EA G
Sbjct: 2 FPDLSEGDLSVYRSALVNNKQLGRLGKKLKLDEFLAYSHEALKNNNLDRSIANGVEALFG 61
Query: 346 AMYIDKGMEAC-EQFCKVCF 364
AMY++ G++ E F K+ F
Sbjct: 62 AMYLENGLDRVREIFGKLTF 81
>gi|322788138|gb|EFZ13920.1| hypothetical protein SINV_02016 [Solenopsis invicta]
Length = 221
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 94/114 (82%), Gaps = 6/114 (5%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA++NILLLSQIAGYV+A++LSLCII+PM+LHQDEF+GHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALSNILLLSQIAGYVVAFILSLCIIVPMSLHQDEFRGHCLLFSTGVWQESDGQFVVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNN------FSQFITSIHLFHV 108
SQAYCNYTIFVG++L V S IQIYR+ +++++ + F +TSI L V
Sbjct: 61 SQAYCNYTIFVGLILLVTSAIQIYRLSLFMYRSEDSSFLSAFVDVVTSIILTTV 114
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQ 527
FG W+S S WVGL V A+LKL RYHQ++NM+VSMYRERQ LI T +Q
Sbjct: 168 FGIWSSLSIWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLIEATTSNQ 216
>gi|380025885|ref|XP_003696694.1| PREDICTED: transmembrane protein 179-like [Apis florea]
Length = 221
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 92/102 (90%), Gaps = 1/102 (0%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQI+GYV+A +LSLCIIIPM+LH+DEFKGHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALTNILLLSQISGYVVALVLSLCIIIPMSLHEDEFKGHCLLFSTGTWQESDGQFIVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
SQAYCNYTIFVG++L +IS IQIYR+ + +++G + S F+++
Sbjct: 61 SQAYCNYTIFVGLMLLLISAIQIYRLSLLMYRGED-SSFLSA 101
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLI 520
FG W S S WVGL V A+LKL RYHQ++NM+VSMYRERQ LI
Sbjct: 168 FGTWTSLSIWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLI 209
>gi|383854336|ref|XP_003702677.1| PREDICTED: transmembrane protein 179-like [Megachile rotundata]
Length = 221
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 91/102 (89%), Gaps = 1/102 (0%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQI+GYV+A +LSLCIIIPM+LHQDEF+GHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALTNILLLSQISGYVVALILSLCIIIPMSLHQDEFRGHCLLFSTGTWQESDGQFVVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
QAYCNYTIFVG+VL + S IQIYR+ +++++G + S F+++
Sbjct: 61 PQAYCNYTIFVGLVLLITSAIQIYRLSVFMYRGED-SSFLSA 101
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLI 520
FG W S S WVGL V A+LKL RYHQ++NM+VSMYRERQ LI
Sbjct: 168 FGTWTSLSIWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLI 209
>gi|332027648|gb|EGI67716.1| Transmembrane protein 179 [Acromyrmex echinatior]
Length = 221
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 92/111 (82%), Gaps = 6/111 (5%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA++NILLLSQIAGYV+A +LSLCII+PM+LHQDEF+GHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALSNILLLSQIAGYVVALILSLCIIVPMSLHQDEFRGHCLLFSTGVWQESDGQFVVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNN------FSQFITSIHL 105
SQ YCNYTIFVG++L + S IQIYR+ +++++G + F +TSI L
Sbjct: 61 SQLYCNYTIFVGLILLITSTIQIYRLSLFMYRGEDSSFLSAFVDVVTSIVL 111
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQ 527
FG W+S S WVGL V A+LKL RYHQ++NM+VSMYRERQ LI T +Q
Sbjct: 168 FGIWSSLSIWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLIEATTSNQ 216
>gi|91089221|ref|XP_967681.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
gi|270011474|gb|EFA07922.1| hypothetical protein TcasGA2_TC005498 [Tribolium castaneum]
Length = 236
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/125 (59%), Positives = 100/125 (80%), Gaps = 3/125 (2%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA++NI+LLSQIAGYVIA++LSLCI++PM+LHQDEF+GHCLLFSTG WQEADGQ V WA
Sbjct: 1 MALSNIVLLSQIAGYVIAFILSLCIVVPMSLHQDEFRGHCLLFSTGVWQEADGQLKVDWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATY 120
SQ YCNYTIFVGV+L ++S++QIYR+ ++++KG + S F+++ F V I G+
Sbjct: 61 SQCYCNYTIFVGVLLCLVSIVQIYRLSLFLYKGTD-SSFLSA--FFDVLTGIILCGMTII 117
Query: 121 RAAIV 125
A ++
Sbjct: 118 AALMI 122
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%)
Query: 459 LDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQN 518
+D Q + + ++ FG W SF+ WVGL V ALLKLCRYHQ++N+RVSMYRERQ
Sbjct: 148 IDKQDGINTTNFYIELGTAQFGVWGSFATWVGLSVFALLKLCRYHQLENIRVSMYRERQR 207
Query: 519 LISETLKS 526
LI+E +S
Sbjct: 208 LINENSES 215
>gi|328788357|ref|XP_394996.4| PREDICTED: transmembrane protein 179-like [Apis mellifera]
Length = 221
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 91/102 (89%), Gaps = 1/102 (0%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQI+GYV+A +LSLCIIIPM+LH+DEF+GHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALTNILLLSQISGYVVALVLSLCIIIPMSLHEDEFRGHCLLFSTGTWQESDGQFIVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
SQAYCNYTIFVG++L + S IQIYR+ + +++G + S F+++
Sbjct: 61 SQAYCNYTIFVGLILLLTSAIQIYRLSLLMYRGED-SSFLSA 101
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLI 520
FG W S S WVGL V A+LKL RYHQ++NM+VSMYRERQ LI
Sbjct: 168 FGTWTSLSIWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLI 209
>gi|307209685|gb|EFN86543.1| Transmembrane protein 179 [Harpegnathos saltator]
Length = 221
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 89/103 (86%), Gaps = 3/103 (2%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQIAGYV+A +LSLCII+PM+LHQDEF+GHCLLFSTG WQE+DGQF+ WA
Sbjct: 1 MALTNILLLSQIAGYVVALILSLCIIVPMSLHQDEFRGHCLLFSTGVWQESDGQFVANWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR--MYMYIHKGNNF-SQFI 100
SQAYCNYTIFVG+VL + S +QIYR + MY H+ ++F S F+
Sbjct: 61 SQAYCNYTIFVGLVLLITSAVQIYRLSLLMYRHEDSSFLSAFV 103
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQ 527
FG W+S + WVGL V A+LKL RYHQ++NM+VSMYRERQ LI T +Q
Sbjct: 168 FGIWSSLTVWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLIEATTSNQ 216
>gi|170042672|ref|XP_001849041.1| ribonuclease iii [Culex quinquefasciatus]
gi|167866168|gb|EDS29551.1| ribonuclease iii [Culex quinquefasciatus]
Length = 300
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 145/291 (49%), Gaps = 78/291 (26%)
Query: 184 VFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHI 243
+ + ++++E K W+ YP LQEQ+P GDR +E +L+ L E S GV F
Sbjct: 49 TYRAAAFQEDESLSKIWINYP---LQEQQPLGDRHHIESFEMLRTLTKFEESVGVCF--- 102
Query: 244 RLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSL 303
L R+ L+LL SS
Sbjct: 103 --LFRIPA--------------------------------------------LTLLWSSQ 116
Query: 304 VNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVC 363
VNNR Q+V+C+D+GM +A N + DLK K+RADLLEAFLGA+Y+DKG
Sbjct: 117 VNNRNQAVICDDLGMTSYAVYSNKQADLKTKERADLLEAFLGALYVDKG----------- 165
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
LN P + + + R G D+ +VIE GPTN+R YT+AVY
Sbjct: 166 ---------LNTAKRSPTTGMTRRASCSR---AGHSDL---QVIECNGPTNTRVYTMAVY 210
Query: 424 FKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQK 474
F+ + LA G+S+QQ E+NAAK AL+ + PQLDHQKRVIA+S++ QK
Sbjct: 211 FRGKHLACCNGHSMQQVEINAAKQALENSKDLFPQLDHQKRVIAQSLKRQK 261
>gi|340714664|ref|XP_003395846.1| PREDICTED: transmembrane protein 179-like [Bombus terrestris]
Length = 221
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 91/102 (89%), Gaps = 1/102 (0%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQI+GYV+A +LSLCIIIPM+LH+DEF+GHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALTNILLLSQISGYVVALVLSLCIIIPMSLHEDEFRGHCLLFSTGTWQESDGQFVVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
SQAYCNYTIFVG++L + S +QIYR+ + +++G + S F+++
Sbjct: 61 SQAYCNYTIFVGLMLLLTSAVQIYRLSLLMYRGED-SSFLSA 101
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLI 520
FG W S S WVGL V A+LKL RYHQ++NM+VSMYRERQ LI
Sbjct: 168 FGTWTSLSIWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLI 209
>gi|350410972|ref|XP_003489197.1| PREDICTED: transmembrane protein 179-like [Bombus impatiens]
Length = 221
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 91/102 (89%), Gaps = 1/102 (0%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQI+GYV+A +LSLCIIIPM+LH+DEF+GHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALTNILLLSQISGYVVALVLSLCIIIPMSLHEDEFRGHCLLFSTGTWQESDGQFVVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
SQAYCNYTIFVG++L + S +QIYR+ + +++G + S F+++
Sbjct: 61 SQAYCNYTIFVGLMLLLTSAVQIYRLSLLMYRGED-SSFLSA 101
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLI 520
FG W S S WVGL V A+LKL RYHQ++NM+VSMYRERQ LI
Sbjct: 168 FGTWTSLSIWVGLSVFAVLKLLRYHQLENMKVSMYRERQRLI 209
>gi|307171263|gb|EFN63196.1| Transmembrane protein 179 [Camponotus floridanus]
Length = 222
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 91/111 (81%), Gaps = 6/111 (5%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQIAGYV+A +LS+CII+PM+LHQDEF+GHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MALTNILLLSQIAGYVVALILSICIIVPMSLHQDEFRGHCLLFSTGIWQESDGQFVVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNN------FSQFITSIHL 105
SQAYCNYTIFVG++L + S +QIYR+ + +++ + F +TSI L
Sbjct: 61 SQAYCNYTIFVGLILLITSAMQIYRLSLLMYRSEDSSFLSAFVDVVTSIIL 111
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNP 532
FG W+S S WVGL V A+LK+ RYHQ++NM+VSMYRERQ LI T P
Sbjct: 168 FGIWSSLSIWVGLSVFAVLKMLRYHQLENMKVSMYRERQKLIEATTSGTQEQEP 221
>gi|156551193|ref|XP_001605914.1| PREDICTED: transmembrane protein 179-like [Nasonia vitripennis]
Length = 225
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 90/111 (81%), Gaps = 6/111 (5%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA TN+LLLSQIAGYV+A +LSLCII+PM+LHQDEF+GHCLLFSTG W+E+DGQF+ WA
Sbjct: 1 MAFTNVLLLSQIAGYVVALILSLCIIVPMSLHQDEFRGHCLLFSTGNWRESDGQFVPDWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNN------FSQFITSIHL 105
SQ YCNYTIFVG++LF+ + +QIYR+ M ++KG + F ITS+ L
Sbjct: 61 SQMYCNYTIFVGLILFLTAAVQIYRLSMLMYKGEDSSFLSAFVDVITSVFL 111
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 459 LDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQN 518
+D + ++ FG W+S S WVGL V A LKL RYHQ++NM+VSMYRERQ
Sbjct: 148 IDKADNIDTSGFHIELGAAQFGTWSSLSIWVGLSVFATLKLLRYHQLENMKVSMYRERQR 207
Query: 519 LI-SETLKSQDNVNPQ 533
LI + + S N +P+
Sbjct: 208 LIEAASSSSGSNKHPE 223
>gi|242247274|ref|NP_001156058.1| conserved hypothetical protein-like [Acyrthosiphon pisum]
gi|239799245|dbj|BAH70553.1| ACYPI000591 [Acyrthosiphon pisum]
Length = 252
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 86/103 (83%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TN LLLSQ+AGY IA +LSLCIIIPM+LHQDEFKGHCLLFS+G W E +GQFLV WA
Sbjct: 1 MALTNKLLLSQVAGYTIAAILSLCIIIPMSLHQDEFKGHCLLFSSGQWLEKNGQFLVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSI 103
SQAYCNY+IFVGV+L VIS IQ YRM ++ +KG + S +T I
Sbjct: 61 SQAYCNYSIFVGVLLLVISSIQTYRMSIFAYKGTDSSFLLTFI 103
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 48/91 (52%)
Query: 459 LDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQN 518
+D Q + Q FG WAS+SCWVGL VC + KLC YHQ+ NM+ SM RERQ
Sbjct: 148 IDIQDGIDTSGFYFQLGVAQFGIWASWSCWVGLTVCTMCKLCYYHQMSNMKASMLRERQK 207
Query: 519 LISETLKSQDNVNPQFVGGTSEGTSAQNPRI 549
LI E + + V P + + N +I
Sbjct: 208 LIDEGMAAPTRVTPYTTQTDTTSDESNNSKI 238
>gi|242013941|ref|XP_002427657.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212512087|gb|EEB14919.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 233
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 87/102 (85%), Gaps = 1/102 (0%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MAI N+LLLSQ+ GY+IA +LSLCI IPM+LHQDEFKGHCLLFSTG WQE+DGQF+V WA
Sbjct: 1 MAIRNLLLLSQLTGYIIALILSLCITIPMSLHQDEFKGHCLLFSTGEWQESDGQFVVKWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
SQA+CNY I VGV+LFV S QIYRM ++++KG + S F+++
Sbjct: 61 SQAFCNYIILVGVILFVSSAFQIYRMSVFVYKGTD-SSFLSA 101
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 459 LDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQN 518
+D Q + ++ F W S++ WVGL VC++LKLCRYHQ++N++VSMYRERQ
Sbjct: 148 IDKQDGIDTTGFYIEIGVAQFAIWGSWATWVGLSVCSILKLCRYHQLENIKVSMYRERQK 207
Query: 519 LISET 523
LI+E
Sbjct: 208 LINEV 212
>gi|332376977|gb|AEE63628.1| unknown [Dendroctonus ponderosae]
Length = 234
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 93/117 (79%), Gaps = 7/117 (5%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TNILLLSQIAGYV+A +LSLCI++PM+L QD+FKGHCLLFSTG WQE DGQ V WA
Sbjct: 1 MALTNILLLSQIAGYVVALILSLCIVVPMSLQQDDFKGHCLLFSTGTWQETDGQLDVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGL 117
SQ YCNYTI VGV+LF++++IQIYR ++++KG + S F+++ F D+ G L
Sbjct: 61 SQGYCNYTILVGVMLFLVALIQIYRFSVFLYKGTD-SSFLSA------FIDVISGIL 110
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 459 LDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQN 518
+DH+ + K+ ++ FG W SF+ WVGL VCA++KL RYHQ++N+RVSM+RERQ
Sbjct: 148 IDHKDEINTKNFYIELGSAQFGVWGSFATWVGLTVCAIIKLLRYHQLENIRVSMFRERQR 207
Query: 519 LISETLKS 526
LI+E S
Sbjct: 208 LINENADS 215
>gi|12834450|dbj|BAB22917.1| unnamed protein product [Mus musculus]
Length = 134
Score = 147 bits (371), Expect = 1e-32, Method: Composition-based stats.
Identities = 70/107 (65%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 362 VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVA 421
VCFFPRL+ FILNQ+WNDPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVA
Sbjct: 3 VCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVA 61
Query: 422 VYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAK 468
VYFK ER+ G SIQQAEM AA AL+K PQ+ HQKR I +
Sbjct: 62 VYFKGERIGCGKGPSIQQAEMGAAMDALEKYN--FPQMAHQKRFIER 106
>gi|357602325|gb|EHJ63348.1| hypothetical protein KGM_14172 [Danaus plexippus]
Length = 224
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 84/102 (82%), Gaps = 1/102 (0%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TN+LLLSQIAGYVI +LSLCII+PM++HQDEF GHCLLFS G WQE DGQ LV W
Sbjct: 1 MALTNVLLLSQIAGYVIGLILSLCIIVPMSMHQDEFSGHCLLFSKGTWQEEDGQLLVAWG 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
S+AYC Y I VGV++F++ +QIYR+ M++++G + S F+++
Sbjct: 61 SRAYCTYVIAVGVLMFIVCCVQIYRLSMFMYRGTD-SSFLSA 101
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 459 LDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQN 518
+D + ++ ++ FGAW +F+ WVGL V + LKLCRYHQ+QN++VSMYRERQ
Sbjct: 148 IDKKDKISTHGFYIELGTAQFGAWGAFATWVGLAVFSTLKLCRYHQLQNIQVSMYRERQR 207
Query: 519 LISE 522
L++E
Sbjct: 208 LVNE 211
>gi|170056263|ref|XP_001863951.1| ribonuclease iii [Culex quinquefasciatus]
gi|167876020|gb|EDS39403.1| ribonuclease iii [Culex quinquefasciatus]
Length = 239
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 136/291 (46%), Gaps = 102/291 (35%)
Query: 184 VFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHI 243
+ + ++++E K W+ YP LQEQ+P GDR +E +L+ L E S GV F
Sbjct: 12 TYRAAAFQEDESLSKIWINYP---LQEQQPLGDRHHIESFEMLRTLTKFEESVGVCF--- 65
Query: 244 RLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSL 303
L R+ L+LL SSL
Sbjct: 66 --LFRI--------------------------------------------PALTLLWSSL 79
Query: 304 VNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVC 363
VNNR Q+V+C+D+GM +A N K DLK K+RADLLEAFLGA+Y+DKG+
Sbjct: 80 VNNRNQAVICDDLGMTSYAVYSNKKADLKTKERADLLEAFLGALYVDKGLNTA------- 132
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
K+IE GPTN+R YT+AVY
Sbjct: 133 -----------------------------------------KLIECNGPTNTRVYTMAVY 151
Query: 424 FKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQK 474
F+ LA G+S+QQ E+NAAK AL+ + PQLDHQKRVIA+S++ QK
Sbjct: 152 FR--LLACCNGHSMQQVEINAAKQALENSKDLFPQLDHQKRVIAQSLKRQK 200
>gi|406929771|gb|EKD65281.1| hypothetical protein ACD_50C00142G0004 [uncultured bacterium]
Length = 220
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 11/220 (5%)
Query: 240 FNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
F + +L + FT RS + SN+RLEFLGD++L I S L+N + E +EG L+
Sbjct: 7 FRNAKLFQQAFTHRSYLNEVKEKTPSNERLEFLGDSILSFIVSTSLFNRYKEFNEGSLTN 66
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMYIDKGME 354
LRS LVN +T S + ++ + + + K + LL EA++GA++ID+G+E
Sbjct: 67 LRSLLVNTKTLSKIAQELNFGDLLMLSKGEEESKGRQNPTLLANCFEAYVGALFIDQGIE 126
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
+F ++ I + DPKS LQ+ + + PIYKV+E GP +
Sbjct: 127 ESSKFINSVLLSKVDEIIQKETLKDPKSILQEI------VQAKKQKSPIYKVVEESGPAH 180
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
+ +TV + + K TG S Q AE NAAKVAL K S
Sbjct: 181 DKLFTVGAFVGENMVGKGTGRSKQIAEENAAKVALSKLQS 220
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ FI S LF+ + + EG L R+ +V + L+ +A+ + D ++ + G +
Sbjct: 40 GDSILSFIVSTSLFNRYKEFNEGSLTNLRSLLVNTKTLSKIAQELNFGDLLMLSKGEEES 99
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ +ANCFEA +GALF+D GI+ + + +SVL K +E+ K+ + P+ LQE
Sbjct: 100 KGRQNPTLLANCFEAYVGALFIDQGIEESSKFINSVLLSKVDEIIQKETLKDPKSILQE 158
>gi|406957759|gb|EKD85624.1| Ribonuclease 3 [uncultured bacterium]
Length = 219
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 11/200 (5%)
Query: 244 RLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
+LL T RS + SN+R+EFLGD++L + SDYL+N +P+ +EG L+ LRS
Sbjct: 11 KLLEEALTHRSYLNEVKEKTPSNERMEFLGDSILSFVVSDYLFNKYPDFNEGKLTNLRSL 70
Query: 303 LVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQ 358
LVN + + + + + + + + ++ AD EAF+GA+++D+G+EA E+
Sbjct: 71 LVNTKMLADLAKECDLGSLLRLSKGEEESGGRNNPSLLADTFEAFIGAIFLDQGIEAAEK 130
Query: 359 FCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSY 418
F + PR + FI DPKS+LQ+ + R P+Y+V E GP +++++
Sbjct: 131 FINLTVIPRAEEFIQKNLLKDPKSRLQEYVQSKRQTS------PLYRVTEEEGPAHAKTF 184
Query: 419 TVAVYFKNERLAKATGNSIQ 438
T+ VY + L K TG+S Q
Sbjct: 185 TIGVYVDEKLLGKGTGHSKQ 204
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ S +LF+ +PD EG L R+ +V + LA LAK L + + G +
Sbjct: 40 GDSILSFVVSDYLFNKYPDFNEGKLTNLRSLLVNTKMLADLAKECDLGSLLRLSKGEEES 99
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFS-SVLYKDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GA+FLD GI+ A++ + +V+ + E K + P+ LQE
Sbjct: 100 GGRNNPSLLADTFEAFIGAIFLDQGIEAAEKFINLTVIPRAEEFIQKNLLKDPKSRLQE 158
>gi|170042189|ref|XP_001848817.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865724|gb|EDS29107.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 245
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 74/92 (80%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA++N+L+LSQ+AG+V A +LSLCI IP+++H F GHCLLF+TG WQE+DG F V WA
Sbjct: 1 MALSNVLILSQVAGHVFALILSLCIFIPLSVHVHSFSGHCLLFATGTWQESDGLFDVRWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHK 92
S+ YCNY I VGV LF++S +QIYR+ + +++
Sbjct: 61 SETYCNYPILVGVALFIVSGVQIYRLAILVYR 92
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAWASF+ WVGL V ALLKL HQ++NM+VSMY ERQ L++E + + + GG
Sbjct: 169 FGAWASFAVWVGLSVFALLKLINNHQLRNMKVSMYIERQRLVNEDVY-RGTTSEVPTGGD 227
Query: 539 SEGTSAQN 546
EG S +
Sbjct: 228 VEGGSIRG 235
>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
Length = 235
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 14/218 (6%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G+ + +LL T S Y + + NQRLEFLGD+VL L+ SDYLY FPE EG L
Sbjct: 11 GISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYRTFPEKSEGEL 70
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYID 350
+ LR+++V + + V ++G+ ++ + + K R AD EA LGA+Y+D
Sbjct: 71 TRLRAAVVCEASLARVAEELGIG--EALLLGRGEEKSGGRKRPSLLADAFEALLGAIYLD 128
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G+E F P LQ + + D K++LQ+ L G P+ +Y+V++
Sbjct: 129 QGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQEL------LQKGSPEKIVYEVLQEE 182
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP +++ + V VY++ + L + G S ++AE AA+ A
Sbjct: 183 GPDHAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAAREA 220
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +L+ FP+ EG L RAA+V LA +A+ +G+ + +L G +
Sbjct: 46 GDSVLSLVVSDYLYRTFPEKSEGELTRLRAAVVCEASLARVAEELGIGEALLLGRGEEKS 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ FEAL+GA++LD G++VA
Sbjct: 106 GGRKRPSLLADAFEALLGAIYLDQGLEVA 134
>gi|347971459|ref|XP_313114.4| AGAP004210-PA [Anopheles gambiae str. PEST]
gi|333468678|gb|EAA08652.5| AGAP004210-PA [Anopheles gambiae str. PEST]
Length = 230
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 72/92 (78%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+L+LSQIAG+V A++LS+CI IP+ +H F GHCLLF+TG WQE DG F V WA
Sbjct: 1 MALANVLILSQIAGHVFAFILSMCIFIPLAIHVRSFDGHCLLFTTGTWQEKDGLFDVRWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHK 92
S+AYCNY I VGV LF+I+ +QIYRM + ++
Sbjct: 61 SEAYCNYPIIVGVCLFIIAGVQIYRMALLAYR 92
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISE 522
FGAWASF+ WVGL V +LLKL HQ++N+RVSMY ERQ L++E
Sbjct: 169 FGAWASFATWVGLSVFSLLKLINNHQVRNIRVSMYIERQRLVNE 212
>gi|393762804|ref|ZP_10351430.1| ribonuclease III [Alishewanella agri BL06]
gi|392606426|gb|EIW89311.1| ribonuclease III [Alishewanella agri BL06]
Length = 225
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 23/233 (9%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
SPL+K+L Y F HI LL + T RS + N+RLEFLGD +L LI ++
Sbjct: 7 SPLMKKLGYQ-------FQHISLLEQALTHRSCKGQH-----NERLEFLGDALLGLIIAE 54
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
L+ FP+ EG L+ +RS+LV T + + ++G+ F + ++ R AD
Sbjct: 55 ALFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLRLGPGELKSGGYRRESILAD 114
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
LEA LGA+Y+D GM+AC+ F PRLQ Q+ D K++LQ+ LR
Sbjct: 115 ALEAILGAIYLDSGMDACKSRILEWFGPRLQEIAPGQQ-KDSKTQLQEYLQGLRL----- 168
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+P Y VI G + +++TV + ATG+S ++AE +AA +AL++
Sbjct: 169 -PLPAYDVIATAGEAHQQTFTVRCTVPGKAPITATGSSRRKAEQDAAALALEQ 220
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + LF FP EG L R+A+V+ LA +A+ +GL DF+ G
Sbjct: 44 GDALLGLIIAEALFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLRLGPGELKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ EA++GA++LD G+D
Sbjct: 104 GGYRRESILADALEAILGAIYLDSGMDA 131
>gi|339640388|ref|ZP_08661832.1| ribonuclease III [Streptococcus sp. oral taxon 056 str. F0418]
gi|339453657|gb|EGP66272.1| ribonuclease III [Streptococcus sp. oral taxon 056 str. F0418]
Length = 232
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 117/228 (51%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F I LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+
Sbjct: 13 GLVFTDISLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYAKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG L+ LRS++V + + D F + + +DR DL EAFLGA+
Sbjct: 71 EGDLTKLRSTIVREESLAGFTRDCQFEKFIKLGKGEEKSGGRDRETILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG+EA F P+++ Q D K+KLQ+ G+ +I +Y+V+
Sbjct: 131 LDKGIEAVRDFLYQTMIPKVEAGDFEQ-VTDYKTKLQELLQA-----NGDVEI-LYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ ++V + + G S + AE AAK A +K C
Sbjct: 184 ETGPAHAKNFEISVSVDGRLVGRGQGRSKKLAEQEAAKNAFEKESQTC 231
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L R+ IV+ + LA + E F+ G +
Sbjct: 50 GDAVLQLIISEYLYAKYPKKPEGDLTKLRSTIVREESLAGFTRDCQFEKFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-VADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
+ + + + FEA +GAL LD GI+ V D ++ +++ K F+Q Y +
Sbjct: 110 GGRDRETILGDLFEAFLGALLLDKGIEAVRDFLYQTMIPKVEAGDFEQVTDYKTKLQELL 169
Query: 212 EPDGD 216
+ +GD
Sbjct: 170 QANGD 174
>gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147]
gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147]
Length = 231
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL VFT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQKKLKNDYGLVFNDEDLLKTVFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQI--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I YK+++ GP + RS+ AV+ + L + G S + AE AA+ A++
Sbjct: 172 --GGETTIS-YKILKEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 116 TTLENLFEAFLGALFIDQGMD 136
>gi|375110957|ref|ZP_09757171.1| RNAse III [Alishewanella jeotgali KCTC 22429]
gi|374568989|gb|EHR40158.1| RNAse III [Alishewanella jeotgali KCTC 22429]
Length = 226
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 123/232 (53%), Gaps = 16/232 (6%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
P+ K L L G FN + LL + T RS + N+RLEFLGD +L LI ++
Sbjct: 2 PMQKSLSPLMRKLGYQFNQLSLLEQALTHRSCKGQH-----NERLEFLGDALLGLIIAEA 56
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ FP+ EG L+ +RS+LV T + + ++G+ F + ++ R AD
Sbjct: 57 LFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLRLGPGELKSGGFRRESILADA 116
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
LEA LGA+Y+D GMEAC+ F PRL+ Q+ D K++LQ+ LR
Sbjct: 117 LEAILGAIYLDSGMEACKGRILEWFGPRLEEIAPGQQ-KDSKTQLQEYLQGLRL------ 169
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+P Y+VI VG + +++TV ATG+S ++AE +AA +AL++
Sbjct: 170 PLPTYEVIATVGEAHQQTFTVRCTVLGRTPITATGSSRRKAEQDAAALALEQ 221
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + LF FP EG L R+A+V+ LA +A+ +GL DF+ G
Sbjct: 45 GDALLGLIIAEALFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLRLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ EA++GA++LD G++
Sbjct: 105 GGFRRESILADALEAILGAIYLDSGMEA 132
>gi|386346835|ref|YP_006045084.1| ribonuclease 3 [Spirochaeta thermophila DSM 6578]
gi|339411802|gb|AEJ61367.1| Ribonuclease 3 [Spirochaeta thermophila DSM 6578]
Length = 251
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 223 SPL----LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQL 278
SPL K+L+ E G+ F + LL F+ RS +++G N+RLEFLGD VL L
Sbjct: 15 SPLSDDRKKELRLFEKQVGIRFRSLELLNLAFSHRSYANERVSMGDNERLEFLGDAVLGL 74
Query: 279 ITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR-- 336
+DYLY FPE EG L+ ++S +V+ T + I + F I+ K + R
Sbjct: 75 AVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNF--ILISKGEEYAGGRTK 132
Query: 337 ----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC-LTL 391
AD +EA +GA ++D G EA F P ++ + N+ D K+ LQ+
Sbjct: 133 KALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENRHKKDYKTLLQEYVQKNF 192
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T P Y+V+E +GP ++R++ + V ++++ G + ++AE +AA +A
Sbjct: 193 KTY-------PRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGKNKKEAEQSAASIA 242
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 104 HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 163
+L+ FP+ +EG LA ++ +V L +A+RI +++F+L + G + K +A+
Sbjct: 79 YLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFILISKGEEYAGGRTKKALLAD 138
Query: 164 CFEALMGALFLDGGIDVA 181
EA++GA FLD G + A
Sbjct: 139 AMEAIIGAYFLDAGFEAA 156
>gi|397169628|ref|ZP_10493060.1| RNAse III [Alishewanella aestuarii B11]
gi|396088932|gb|EJI86510.1| RNAse III [Alishewanella aestuarii B11]
Length = 226
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 16/232 (6%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
P+ K L L G FN + LL + T RS + N+RLEFLGD +L LI ++
Sbjct: 2 PMQKSLSPLMRKLGYQFNQLSLLEQALTHRSCKGQH-----NERLEFLGDALLGLIIAEA 56
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ FP+ EG L+ +RS+LV T + + ++G+ F + ++ R AD
Sbjct: 57 LFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLRLGPGELKSGGFRRESILADA 116
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
LEA LGA+Y+D GMEAC+ F PRL+ Q+ D K++LQ+ LR
Sbjct: 117 LEAILGAIYLDSGMEACKGRILEWFGPRLEEIAPGQQ-KDSKTQLQEYLQGLRL------ 169
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+P Y+VI +G + +++TV ATG+S ++AE +AA +AL++
Sbjct: 170 PLPTYEVIATIGEAHQQTFTVRCTVLGRTPITATGSSRRKAEQDAAALALEQ 221
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + LF FP EG L R+A+V+ LA +A+ +GL DF+ G
Sbjct: 45 GDALLGLIIAEALFARFPQTREGDLTRMRSALVKGVTLASIAQELGLSDFLRLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ EA++GA++LD G++
Sbjct: 105 GGFRRESILADALEAILGAIYLDSGMEA 132
>gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 231
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 24/243 (9%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLI 279
++K+L+ LE S + F+ RLL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MMKKLEALLENSFNIRFDDKRLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLI 58
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--- 336
S+YL+ +P+ EG +S LRS++V R +S+ F A I K + K R
Sbjct: 59 ISEYLFAKYPKQTEGDMSKLRSTIV--REESLAGFSRYCSFDAYIKLGKGEEKSGGRHRE 116
Query: 337 ---ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRT 393
DL EAFLGA+ +DKG+E +F P++ ++ K K + C L+
Sbjct: 117 TILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQV------EQGTFEKVKDYKTC--LQE 168
Query: 394 LDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
L + D+ I Y+VI GP +++ + VAV +RL+K TG S + AE +AAK AL +
Sbjct: 169 LLQAKGDVVIDYQVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 228
Query: 453 PSI 455
+
Sbjct: 229 SEV 231
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 51 GDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + + FEA +GAL LD GI+ + + V+
Sbjct: 111 GGRHRETILGDLFEAFLGALLLDKGIEEVRRFLNQVM 147
>gi|170051370|ref|XP_001861732.1| ribonuclease iii [Culex quinquefasciatus]
gi|167872669|gb|EDS36052.1| ribonuclease iii [Culex quinquefasciatus]
Length = 186
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 45/189 (23%)
Query: 288 FPEHHEGHLSLLRSSLV--NNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
FP+ +G L+ R++ + + +D+G+ +A N K DLK KDRADLLEAFLG
Sbjct: 2 FPDLEKGGLATYRAAAFQEDESLSKIWSDDLGITSYAVYSNKKADLKTKDRADLLEAFLG 61
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+DKG+ +K C
Sbjct: 62 ALYVDKGLNT--------------------------AKRSATC----------------- 78
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRV 465
VIE GPTN+R YT+AVYF+ + LA + G+SIQ+A++NAAK AL+ + PQLDHQKRV
Sbjct: 79 VIECNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALENSKDLFPQLDHQKRV 138
Query: 466 IAKSIELQK 474
IA+S++ QK
Sbjct: 139 IAQSLKRQK 147
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 8/85 (9%)
Query: 108 VFPDIEEGGLATYRAAIVQ-NQHLAHL-AKRIGLEDFMLYAHGSDLCHEVELK-HAMANC 164
+FPD+E+GGLATYRAA Q ++ L+ + + +G+ + +Y++ + +LK A+
Sbjct: 1 MFPDLEKGGLATYRAAAFQEDESLSKIWSDDLGITSYAVYSN-----KKADLKTKDRADL 55
Query: 165 FEALMGALFLDGGIDVADQVFSSVL 189
EA +GAL++D G++ A + + V+
Sbjct: 56 LEAFLGALYVDKGLNTAKRSATCVI 80
>gi|406945035|gb|EKD76646.1| hypothetical protein ACD_43C00031G0003 [uncultured bacterium]
Length = 241
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 130/236 (55%), Gaps = 14/236 (5%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT--LGSNQRLEFLGDTVLQLI 279
Q P LK L +E G+ F + LL + RS N + +G N+RLEFLGD VL+L+
Sbjct: 9 QPPSLKDLSAVEERIGLTFANKNLLTQSLVHRSYLNENRSFPVGHNERLEFLGDAVLELV 68
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVD-----LKMK 334
++YLY H+ ++ EG L+ R+SLVN+ S + ++ + F + + ++K
Sbjct: 69 VTEYLYTHY-DNPEGELTNWRASLVNSNMLSTLTTELNIEEFLYLSKGEQKDNHGKARLK 127
Query: 335 DRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
A++ E+ GA+YI++G +A ++F +L + + N+ + DPK+ Q+ +
Sbjct: 128 ILANVFESICGAIYIERGYDAAKKFILDRIIGKLDFILKNKLYLDPKTLFQEQAQEKLGI 187
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P YKV+ GP +++++TVAV+ +A TG+S Q A++NAA A+Q
Sbjct: 188 ------TPTYKVLREEGPDHNKTFTVAVHIGEAEVAVGTGSSKQAAQVNAAHRAIQ 237
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG--SD 150
G+ + + + +L+ + D EG L +RA++V + L+ L + +E+F+ + G D
Sbjct: 61 GDAVLELVVTEYLYTHY-DNPEGELTNWRASLVNSNMLSTLTTELNIEEFLYLSKGEQKD 119
Query: 151 LCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYY-PQHPLQ 209
+ LK +AN FE++ GA++++ G D A + + + K +Y P+ Q
Sbjct: 120 NHGKARLK-ILANVFESICGAIYIERGYDAAKKFILDRIIGKLDFILKNKLYLDPKTLFQ 178
Query: 210 EQ 211
EQ
Sbjct: 179 EQ 180
>gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1041
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 68/82 (82%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 929 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 988
Query: 153 HEVELKHAMANCFEALMGALFL 174
E +L+HAMANCFEAL+G +
Sbjct: 989 RESDLRHAMANCFEALIGETLM 1010
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+ N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ + + F
Sbjct: 919 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 978
>gi|414564398|ref|YP_006043359.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338847463|gb|AEJ25675.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 231
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 24/243 (9%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLI 279
++K+L+ LE S + F+ RLL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MMKKLEALLENSFNIRFDDKRLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLI 58
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--- 336
S+YL+ +P+ EG +S LRS++V R +S+ F A I K + K R
Sbjct: 59 ISEYLFAKYPKQTEGDMSKLRSTIV--REESLAGFSRYCSFDAYIKLGKGEEKSGGRHRD 116
Query: 337 ---ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRT 393
DL EAFLGA+ +DKG+E +F P++ ++ K K + C L+
Sbjct: 117 TILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQV------EQGTFEKVKDYKTC--LQE 168
Query: 394 LDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
L + D+ I Y+VI GP +++ + VAV +RL+K TG S + AE +AAK AL +
Sbjct: 169 LLQAKGDVVIDYQVISETGPAHAKQFEVAVLVGEDRLSKGTGRSKKLAEQDAAKNALAQL 228
Query: 453 PSI 455
+
Sbjct: 229 SEV 231
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 51 GDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD GI+ + + V+
Sbjct: 111 GGRHRDTILGDLFEAFLGALLLDKGIEEVRRFLNQVM 147
>gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
Length = 1059
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 140/273 (51%), Gaps = 38/273 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + +SI+LF+ + +EG L+ RA ++N +L ++KR+ L++ + L
Sbjct: 795 GDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEILR------LS 848
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E+K A+ EAL GA+ LD G + A ++ ++ D+ VR PL +
Sbjct: 849 NSDEIKKPHADVIEALFGAISLDRGFEKAYEIIVRYVFNDSNVRL---------PLYQSS 899
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN---QRLE 269
+E++ L L+ L ++ + +H LL F++ G+N QRLE
Sbjct: 900 -------MEETVLSHDLRTLLFNLDLRIDHPSLLEEAFSS----------GTNVNYQRLE 942
Query: 270 FLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN-PK 328
F+GD VL IT+DYLY FPE++EG L+ RS LV N S + +P NI + +
Sbjct: 943 FVGDGVLDYITADYLYKEFPEYNEGTLTEFRSRLVRNNNLSDASKRLKLP--PNITDEER 1000
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCK 361
L K D E+ +G + +D+G+E +QF K
Sbjct: 1001 AALPPKRLGDYFESLVGCLVLDRGVEETKQFVK 1033
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
LG NQRLE+LGD+VL+L +S YL+ + EG LS+ R++ + N V + +
Sbjct: 785 LGDNQRLEYLGDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEI 844
Query: 322 ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEAC 356
+ N D K AD++EA GA+ +D+G E
Sbjct: 845 LRLSN--SDEIKKPHADVIEALFGAISLDRGFEKA 877
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +IT+ +L+ FP+ EG L +R+ +V+N +L+ +KR+ L + + L
Sbjct: 945 GDGVLDYITADYLYKEFPEYNEGTLTEFRSRLVRNNNLSDASKRLKLPPNITDEERAALP 1004
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSS--VLYKDN 193
+ + + FE+L+G L LD G++ Q LYKDN
Sbjct: 1005 PK-----RLGDYFESLVGCLVLDRGVEETKQFVKKHLHLYKDN 1042
>gi|157113033|ref|XP_001657734.1| hypothetical protein AaeL_AAEL001013 [Aedes aegypti]
gi|157115074|ref|XP_001658100.1| hypothetical protein AaeL_AAEL007072 [Aedes aegypti]
gi|108877036|gb|EAT41261.1| AAEL007072-PA [Aedes aegypti]
gi|108883704|gb|EAT47929.1| AAEL001013-PA [Aedes aegypti]
Length = 240
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 73/92 (79%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA++N+L+LSQ+AG+VI +LSLC+ IP+++H F GHCLLF+TG WQE DG F V+W
Sbjct: 1 MALSNVLILSQVAGHVIGLILSLCMFIPLSIHVHSFNGHCLLFATGTWQEKDGLFDVSWP 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHK 92
S+A CNY I VGV LFVIS +QIYR+ + +++
Sbjct: 61 SEANCNYPILVGVALFVISGLQIYRLAILVYR 92
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETL-KSQDNVNPQFVGG 537
FGAWASF+ WVGL V ALLKL HQ++NM+VSMY ERQ L++E + + + P
Sbjct: 169 FGAWASFATWVGLSVFALLKLINNHQLRNMKVSMYIERQRLVNEDVYRGTTSELPVGAAA 228
Query: 538 TSEGTSAQN 546
+ G+ +N
Sbjct: 229 GTAGSPGEN 237
>gi|418039238|ref|ZP_12677544.1| Ribonuclease III [Lactococcus lactis subsp. cremoris CNCM I-1631]
gi|354692354|gb|EHE92184.1| Ribonuclease III [Lactococcus lactis subsp. cremoris CNCM I-1631]
Length = 236
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 6 MLKLQKKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 63
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 64 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 123
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 124 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQI--- 176
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I YK+++ GP + RS+ AV+ + L + G S + AE AA+ A++
Sbjct: 177 --GGETTIS-YKILKEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 230
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 61 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 120
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 121 TTLENLFEAFLGALFIDQGMD 141
>gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|385830346|ref|YP_005868159.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|13878708|sp|Q9CHD0.1|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|374672851|dbj|BAL50742.1| ribonuclease III [Lactococcus lactis subsp. lactis IO-1]
Length = 231
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQKKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQI--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I YK+++ GP + RS+ AV+ + L + G S + AE AA+ A++
Sbjct: 172 --GGETTIS-YKILKEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 116 TTLENLFEAFLGALFIDQGMD 136
>gi|406909765|gb|EKD49949.1| Ribonuclease III [uncultured bacterium]
Length = 229
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDY 283
+K LE G+ F +L F RS + N + SN+R+EFLGD VL+L+++++
Sbjct: 1 MKDSSILEKLIGIKFKDKNILNNAFIHRSYINEHRNEGIESNERMEFLGDAVLELVSTEH 60
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN--PKVDLKMKDR--ADL 339
LY + P++ EG ++ RS+LV R + + ++ + + + + K + K+ A+
Sbjct: 61 LYKNHPDYDEGEMTNYRSALVKGRHLADIALELALGDYLRMSHGEEKSEGNRKNHILANT 120
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
LEA +GA+Y+DKG + E+F K RL I DPKS+ Q+ +
Sbjct: 121 LEALIGAIYLDKGFKTAEKFVKKFILVRLDEIIEKNLHIDPKSQFQEIVQEKVGV----- 175
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y+ + GP +++ + + VY +E +AK G+S Q+AE +AAK AL K
Sbjct: 176 -TPTYETLSESGPDHAKKFEIGVYINSELIAKGEGSSKQKAEEDAAKQALIK 226
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +++ HL+ PD +EG + YR+A+V+ +HLA +A + L D++ +HG +
Sbjct: 49 GDAVLELVSTEHLYKNHPDYDEGEMTNYRSALVKGRHLADIALELALGDYLRMSHGEEKS 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQE 210
H +AN EAL+GA++LD G A++ V +L + +E+ K P+ QE
Sbjct: 109 EGNRKNHILANTLEALIGAIYLDKGFKTAEKFVKKFILVRLDEIIEKNLHIDPKSQFQE 167
>gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11]
gi|385838719|ref|YP_005876349.1| Ribonuclease III [Lactococcus lactis subsp. cremoris A76]
gi|122940253|sp|Q030F9.1|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11]
gi|358749947|gb|AEU40926.1| Ribonuclease III [Lactococcus lactis subsp. cremoris A76]
Length = 231
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQEKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQV--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I Y +++ GP + RS+ AVY + L + G S + AE AA+ A++
Sbjct: 172 --GGETTI-TYNILKEEGPAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 116 TTLENLFEAFLGALFIDQGMD 136
>gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
gi|259646553|sp|C0MCR4.1|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
Length = 230
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 129/242 (53%), Gaps = 24/242 (9%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE S + F+ RLL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEALLENSFNIRFDDKRLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS++V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKQTEGDMSKLRSTIV--REESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E +F P++ ++ K K + C L+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQV------EQGTFEKVKDYKTC--LQEL 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + VAV +RL+K TG S + AE +AAK AL +
Sbjct: 169 LQAKGDVVIDYQVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD GI+ + + V+
Sbjct: 110 GGRHRDTILGDLFEAFLGALLLDKGIEEVRRFLNQVM 146
>gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
gi|389854915|ref|YP_006357159.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
gi|189043323|sp|A2RLZ8.1|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
Length = 231
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQKKLKNDYGLVFNDEYLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQI--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I YK+++ GP + RS+ AV+ + L + G S + AE AA+ A++
Sbjct: 172 --GGETTIS-YKILKEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 116 TTLENLFEAFLGALFIDQGMD 136
>gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
gi|421490061|ref|ZP_15937436.1| ribonuclease III [Streptococcus anginosus SK1138]
gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
gi|400374074|gb|EJP26998.1| ribonuclease III [Streptococcus anginosus SK1138]
Length = 232
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+
Sbjct: 13 GIVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS LRS++V + + D F + + ++R DL EAFLGA+
Sbjct: 71 EGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG+EA + F P+++ Q D K+KLQ+ G+ +I +Y+VI
Sbjct: 131 LDKGVEAVKNFLYQVMIPKVEVGDFEQ-VVDYKTKLQELLQV-----NGDVEI-VYQVIS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++ + VAV + + G S + AE AAK A +K C
Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKESHSC 231
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQEQ 211
+ + FEA +GAL LD G++ V+ EV F+Q + Y +
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVVDYKTKLQELL 169
Query: 212 EPDGDRQWVEQ 222
+ +GD + V Q
Sbjct: 170 QVNGDVEIVYQ 180
>gi|335032359|ref|ZP_08525758.1| ribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
gi|333767274|gb|EGL44529.1| ribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
Length = 232
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+
Sbjct: 13 GIVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS LRS++V + + D F + + ++R DL EAFLGA+
Sbjct: 71 EGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG+EA + F P+++ Q D K+KLQ+ G+ +I +Y+VI
Sbjct: 131 LDKGVEAVKNFLYQVMIPKVEVGDFEQ-VVDYKTKLQELLQV-----NGDVEI-VYQVIS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++ + VAV + + G S + AE AAK A +K C
Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKESHSC 231
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQEQ 211
+ + FEA +GAL LD G++ V+ EV F+Q + Y +
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVVDYKTKLQELL 169
Query: 212 EPDGDRQWVEQ 222
+ +GD + V Q
Sbjct: 170 QVNGDVEIVYQ 180
>gi|414074022|ref|YP_006999239.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
gi|413973942|gb|AFW91406.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
Length = 231
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQEKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L E+FLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFESFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQV--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I Y +++ GP + RS+ AVY + L + G S + AE AA+ A++
Sbjct: 172 --GGETTI-TYNILKEEGPAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FE+ +GALF+D G+D
Sbjct: 116 TTLENLFESFLGALFIDQGMD 136
>gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
Length = 232
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 18/240 (7%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L + G++F + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLENLLFDRFGLVFKDVSLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG L+ LRS++V + + D F + + ++R
Sbjct: 59 SEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E + F P+++ Q D K+KLQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGLEIVKDFIYQVMIPKVEAGDFEQ-VTDYKTKLQELLQS-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ +I +Y+V+ GP +++++ V+V + K G S + AE AAK A +K C
Sbjct: 173 GDVEI-LYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKENHSC 231
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLIISEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-VADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
E + + + FEA +GAL LD G++ V D ++ ++ K F+Q Y +
Sbjct: 110 GGRERETILGDLFEAFLGALLLDKGLEIVKDFIYQVMIPKVEAGDFEQVTDYKTKLQELL 169
Query: 212 EPDGDRQWVEQ 222
+ +GD + + Q
Sbjct: 170 QSNGDVEILYQ 180
>gi|406985904|gb|EKE06602.1| hypothetical protein ACD_18C00314G0005 [uncultured bacterium]
Length = 253
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 18/240 (7%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
K Q +E + G++F++ +L + RS N L N+RLEFLGD VL+L + YL
Sbjct: 9 KNFQNIENTIGIVFDNKNILVQALVHRSFLNENRDFALAHNERLEFLGDAVLELSVTQYL 68
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDR--ADL 339
+N++ + EG L+ R++LVN + V DI + F + + ++K +D A+
Sbjct: 69 FNNYL-NPEGELTNWRAALVNGTMCARVARDIELEDYLFLSKGESKDNNIKARDYILANA 127
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
LEA +GA+Y D+G + QF +L + W D KS+ Q+ + +
Sbjct: 128 LEALIGAIYFDRGWDMANQFITRFVITKLPEVLELGLWMDSKSRFQEAAQEIVGI----- 182
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ----KCPSI 455
P Y+V+ GP + + +T+AVY E++A+ G S Q+ + +AA ALQ K P +
Sbjct: 183 -TPTYRVVSEEGPDHEKEFTIAVYLDKEKVAEGKGTSKQEGQTDAADKALQIKKWKGPKV 241
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 114 EGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK-HAMANCFEALMGAL 172
EG L +RAA+V A +A+ I LED++ + G + ++ + + +AN EAL+GA+
Sbjct: 76 EGELTNWRAALVNGTMCARVARDIELEDYLFLSKGESKDNNIKARDYILANALEALIGAI 135
Query: 173 FLDGGIDVADQVFS 186
+ D G D+A+Q +
Sbjct: 136 YFDRGWDMANQFIT 149
>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
gi|189043362|sp|A8AWC2.1|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
substr. CH1]
Length = 232
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 18/240 (7%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L + G++F + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLENLLFDRFGLVFKDVSLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG L+ LRS++V + + D F + + ++R
Sbjct: 59 SEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E + F P+++ Q D K+KLQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGLEVVKNFIYQVMIPKVEAGDFEQ-VTDYKTKLQELLQS-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ +I +Y+V+ GP +++++ V+V + K G S + AE AAK A +K C
Sbjct: 173 GDVEI-LYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKENHSC 231
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLIISEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQEQ 211
E + + + FEA +GAL LD G++V V+ E F+Q Y +
Sbjct: 110 GGRERETILGDLFEAFLGALLLDKGLEVVKNFIYQVMIPKVEAGDFEQVTDYKTKLQELL 169
Query: 212 EPDGD 216
+ +GD
Sbjct: 170 QSNGD 174
>gi|407003127|gb|EKE19747.1| hypothetical protein ACD_8C00115G0008 [uncultured bacterium]
Length = 227
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
GV F++I LL + T RS N L + N+RLEFLGD VL+LI +++LYN++ ++ EG
Sbjct: 10 GVKFDNIELLRQAVTHRSYLNENRDLAIEHNERLEFLGDAVLELIITEHLYNNY-KNPEG 68
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA------DLLEAFLGAMY 348
L+ RS+LVN + V D+G+ +++ + + K K RA + LEA +GA Y
Sbjct: 69 ELTSWRSALVNGEMLASVSQDLGVE--KHLLMSRGEAKDKGRARQYLLANALEAIIGASY 126
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G + ++F RL+ + + + DPKS Q+ + P Y+V++
Sbjct: 127 LDQGYDTTKKFVLDNVAVRLKEILEKKLYLDPKSFFQEKAQENNKV------TPSYRVMK 180
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + + + V VY +E +A+ GNS Q+A+ AA++ L+
Sbjct: 181 EWGPDHDKHFVVGVYLADELVAEGEGNSKQEAQREAARLGLE 222
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I + HL++ + + EG L ++R+A+V + LA +++ +G+E +L + G
Sbjct: 47 GDAVLELIITEHLYNNYKN-PEGELTSWRSALVNGEMLASVSQDLGVEKHLLMSRGEAKD 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
++ +AN EA++GA +LD G D + V +V + E+ K+ P+ QE+
Sbjct: 106 KGRARQYLLANALEAIIGASYLDQGYDTTKKFVLDNVAVRLKEILEKKLYLDPKSFFQEK 165
Query: 212 EPDGDR 217
+ ++
Sbjct: 166 AQENNK 171
>gi|422855143|ref|ZP_16901801.1| ribonuclease III [Streptococcus sanguinis SK1]
gi|422862136|ref|ZP_16908768.1| ribonuclease III [Streptococcus sanguinis SK408]
gi|422865104|ref|ZP_16911729.1| ribonuclease III [Streptococcus sanguinis SK1058]
gi|422876018|ref|ZP_16922488.1| ribonuclease III [Streptococcus sanguinis SK1056]
gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1]
gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408]
gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058]
gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056]
Length = 232
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFSDETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEIAYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKESSSC 231
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66]
gi|422820878|ref|ZP_16869071.1| ribonuclease III [Streptococcus sanguinis SK353]
gi|422870540|ref|ZP_16917033.1| ribonuclease III [Streptococcus sanguinis SK1087]
gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66]
gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353]
gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087]
Length = 232
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFSDETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEITYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKESSSC 231
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211]
gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211]
Length = 232
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+
Sbjct: 13 GIVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS LRS++V + + D F + + ++R DL EAFLGA+
Sbjct: 71 EGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG+EA + F P+++ Q D K+KLQ+ G+ +I +Y+V
Sbjct: 131 LDKGVEAVKNFLYQVMIPKVEVGDFEQVI-DYKTKLQELLQV-----NGDVEI-VYQVTS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++ + VAV + + G S + AE AAK A +K C
Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKESHSC 231
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQEQ 211
+ + FEA +GAL LD G++ V+ EV F+Q + Y +
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVIDYKTKLQELL 169
Query: 212 EPDGDRQWVEQ 222
+ +GD + V Q
Sbjct: 170 QVNGDVEIVYQ 180
>gi|407001808|gb|EKE18718.1| hypothetical protein ACD_9C00254G0001 [uncultured bacterium]
Length = 233
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
GV F+++ LL + T RS N L N+RLEFLGD VL+LI +++LYN++ ++ EG
Sbjct: 16 GVKFDNVELLRQAVTHRSYLNENRDYALEHNERLEFLGDAVLELIITEHLYNNY-KNPEG 74
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA------DLLEAFLGAMY 348
L+ RS+LVN + V +IG+ + ++ + + K K RA + LEA +GA Y
Sbjct: 75 ELTSWRSALVNGEMLAHVAQEIGVEKY--LLMSRGEAKDKGRARQYLLANALEAIIGATY 132
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G + ++F RL+ + + + DPKS Q+ + P Y+VI+
Sbjct: 133 LDQGYDVTKKFVLKNVAIRLKEILEKKLYLDPKSYFQEKAQENNKV------TPSYRVIK 186
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + + + V VY +E +A+ GNS Q+A+ AA++ L+
Sbjct: 187 EWGPDHDKHFVVGVYLADELIAEGEGNSKQEAQREAARLGLE 228
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I + HL++ + + EG L ++R+A+V + LAH+A+ IG+E ++L + G
Sbjct: 53 GDAVLELIITEHLYNNYKN-PEGELTSWRSALVNGEMLAHVAQEIGVEKYLLMSRGEAKD 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
++ +AN EA++GA +LD G DV + V +V + E+ K+ P+ QE+
Sbjct: 112 KGRARQYLLANALEAIIGATYLDQGYDVTKKFVLKNVAIRLKEILEKKLYLDPKSYFQEK 171
Query: 212 EPDGDR 217
+ ++
Sbjct: 172 AQENNK 177
>gi|418966405|ref|ZP_13518146.1| ribonuclease III [Streptococcus constellatus subsp. constellatus
SK53]
gi|383340226|gb|EID18538.1| ribonuclease III [Streptococcus constellatus subsp. constellatus
SK53]
Length = 232
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F + RLL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+
Sbjct: 13 GIVFQNERLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS LRS++V + + D F + + ++R DL EAFLGA+
Sbjct: 71 EGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DK +EA ++F P+++ Q D K+KLQ+ G+ DI +Y+VI
Sbjct: 131 LDKDVEAVKKFLYQIMIPKVEVGDFEQVI-DYKTKLQELLQV-----NGDVDI-VYQVIS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++ + V+V + + G S + AE AAK A +K C
Sbjct: 184 ESGPAHAKEFDVSVSVDGRVVGQGQGRSKKLAEQEAAKNAFEKENYSC 231
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + FEA +GAL LD ++ + ++ EV F+Q + Y + LQE
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKDVEAVKKFLYQIMIPKVEVGDFEQVIDY-KTKLQE 167
>gi|406909641|gb|EKD49850.1| hypothetical protein ACD_63C00028G0002 [uncultured bacterium]
Length = 230
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 13/226 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
LE GV F + +LL + F RS N L +N+RLEFLGD VL+LI ++Y+Y +P
Sbjct: 8 LEKKLGVTFKNKKLLQQSFIHRSFLNENRNFPLENNERLEFLGDAVLELIVTEYIYGEYP 67
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLG 345
+ EG L+ RSSLVN S + + + + + K + R A+ EA +G
Sbjct: 68 -NPEGELTNWRSSLVNGNMLSKISRKLEFEKYLYLSRGEQKDKGRARELLLANCFEAVVG 126
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+DKG EA + F K +L I + + DPKSK Q+ + P YK
Sbjct: 127 AIYLDKGYEAAKVFIKKNLIVKLPQIIEKKLFIDPKSKFQELSQEKTGI------TPTYK 180
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
V++ GP +++ + V Y E++ G S Q A+ AA+ AL+K
Sbjct: 181 VLKEHGPDHNKYFAVGAYIGKEQVGIGEGASKQDAQTKAAEEALKK 226
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 69/127 (54%), Gaps = 6/127 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I + +++ +P+ EG L +R+++V L+ +++++ E ++ + G
Sbjct: 50 GDAVLELIVTEYIYGEYPN-PEGELTNWRSSLVNGNMLSKISRKLEFEKYLYLSRGEQKD 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF--SSVLYKDNEVRFKQWMYYPQHPLQE 210
+ +ANCFEA++GA++LD G + A +VF +++ K ++ K+ P+ QE
Sbjct: 109 KGRARELLLANCFEAVVGAIYLDKGYEAA-KVFIKKNLIVKLPQIIEKKLFIDPKSKFQE 167
Query: 211 --QEPDG 215
QE G
Sbjct: 168 LSQEKTG 174
>gi|366053080|ref|ZP_09450802.1| ribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 233
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
FN+ LL FT S + N L +R+EFLGD VLQL S+Y+Y +P+ +G L+
Sbjct: 17 FNNHELLDEAFTQASYVNEHPNQGLKFYERIEFLGDAVLQLTVSEYIYQRYPKMPQGELT 76
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGM 353
LR+++V + S + + + + + + R+ D+ E+F+GA+Y+D+G
Sbjct: 77 RLRAAMVQEDSFSKFALECHFDKYIRLGHGEEMAGARQRSSLLCDIFESFIGALYLDQGK 136
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDP----KSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
+A E+F FP+L +Q W D K+ LQ+ G+ DI YKV +
Sbjct: 137 KAVEKFITKVIFPKL-----DQGWFDHAVDYKTSLQEFLQR-----NGDVDID-YKVAKE 185
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP N+R YTV VY N+++ TG S + AEM AAK AL
Sbjct: 186 EGPANARQYTVNVYADNQKIGSGTGTSKKHAEMEAAKAAL 225
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P + +G L RAA+VQ + A + ++ HG ++
Sbjct: 51 GDAVLQLTVSEYIYQRYPKMPQGELTRLRAAMVQEDSFSKFALECHFDKYIRLGHGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G ++ + V++
Sbjct: 111 GARQRSSLLCDIFESFIGALYLDQGKKAVEKFITKVIF 148
>gi|418962927|ref|ZP_13514776.1| ribonuclease III [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383344903|gb|EID23053.1| ribonuclease III [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 232
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+ E
Sbjct: 14 IVFQDEKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS++V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
DKG+EA + F P+++ Q D K+KLQ+ G+ +I +Y+VI
Sbjct: 132 DKGVEAVKNFLYQVMIPKVEVGDFEQ-VVDYKTKLQELLQV-----NGDVEI-VYQVISE 184
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++ + VAV + + G S + AE AAK A +K C
Sbjct: 185 SGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKESHSC 231
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQEQ 211
+ + FEA +GAL LD G++ V+ EV F+Q + Y +
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKNFLYQVMIPKVEVGDFEQVVDYKTKLQELL 169
Query: 212 EPDGDRQWVEQ 222
+ +GD + V Q
Sbjct: 170 QVNGDVEIVYQ 180
>gi|343525890|ref|ZP_08762843.1| ribonuclease III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|423068319|ref|ZP_17057107.1| ribonuclease 3 [Streptococcus intermedius F0395]
gi|343395300|gb|EGV07841.1| ribonuclease III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|355367210|gb|EHG14923.1| ribonuclease 3 [Streptococcus intermedius F0395]
Length = 232
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F + RLL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+
Sbjct: 13 GIVFQNERLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS LRS++V + + D F + + ++R DL EAFLGA+
Sbjct: 71 EGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DK +EA ++F P+++ Q D K+KLQ+ G+ DI +Y+VI
Sbjct: 131 LDKDVEAVKKFLYQIMIPKVEAGDFEQVI-DYKTKLQELLQV-----NGDVDI-VYQVIS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++ + V+V + + G S + AE AAK A +K C
Sbjct: 184 ESGPAHAKEFDVSVSVDGRVVGQGQGRSKKLAEQEAAKNAFEKENYSC 231
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + FEA +GAL LD ++ + ++ E F+Q + Y + LQE
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKDVEAVKKFLYQIMIPKVEAGDFEQVIDY-KTKLQE 167
>gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36]
gi|401681358|ref|ZP_10813258.1| ribonuclease III [Streptococcus sp. AS14]
gi|422826705|ref|ZP_16874884.1| ribonuclease III [Streptococcus sanguinis SK678]
gi|422847071|ref|ZP_16893754.1| ribonuclease III [Streptococcus sanguinis SK72]
gi|422851262|ref|ZP_16897932.1| ribonuclease III [Streptococcus sanguinis SK150]
gi|422882646|ref|ZP_16929102.1| ribonuclease III [Streptococcus sanguinis SK355]
gi|422884520|ref|ZP_16930968.1| ribonuclease III [Streptococcus sanguinis SK49]
gi|189043368|sp|A3CP46.1|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36]
gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678]
gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72]
gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150]
gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355]
gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49]
gi|400186128|gb|EJO20341.1| ribonuclease III [Streptococcus sp. AS14]
Length = 232
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFSDETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEIAYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKESSSC 231
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>gi|422823206|ref|ZP_16871394.1| ribonuclease III [Streptococcus sanguinis SK405]
gi|422848274|ref|ZP_16894950.1| ribonuclease III [Streptococcus sanguinis SK115]
gi|422878402|ref|ZP_16924868.1| ribonuclease III [Streptococcus sanguinis SK1059]
gi|422928255|ref|ZP_16961197.1| ribonuclease III [Streptococcus sanguinis ATCC 29667]
gi|422931251|ref|ZP_16964182.1| ribonuclease III [Streptococcus sanguinis SK340]
gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405]
gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115]
gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059]
gi|339617400|gb|EGQ22026.1| ribonuclease III [Streptococcus sanguinis ATCC 29667]
gi|339620433|gb|EGQ25003.1| ribonuclease III [Streptococcus sanguinis SK340]
Length = 232
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFSDETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEITYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKESSSC 231
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>gi|445378760|ref|ZP_21426909.1| ribonuclease III [Streptococcus thermophilus MTCC 5460]
gi|445392984|ref|ZP_21428634.1| ribonuclease III [Streptococcus thermophilus MTCC 5461]
gi|444749392|gb|ELW74294.1| ribonuclease III [Streptococcus thermophilus MTCC 5461]
gi|444749656|gb|ELW74547.1| ribonuclease III [Streptococcus thermophilus MTCC 5460]
Length = 229
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 64 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G+ DI
Sbjct: 124 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVI-DYKTALQE-----RLQVNGKVDI 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y VI+ GP +++ +T+ V + L+ G S + AE AAK AL++
Sbjct: 178 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQ 226
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 50 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 110 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146
>gi|422854630|ref|ZP_16901294.1| ribonuclease III [Streptococcus sanguinis SK160]
gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160]
Length = 232
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFADETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEIAYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKESSSC 231
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
gi|81559233|sp|Q5LZ68.1|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81560422|sp|Q5M3S3.1|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
Length = 237
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 14 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 71
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 72 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 131
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G+ DI
Sbjct: 132 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVI-DYKTALQE-----RLQVNGKVDI 185
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y VI+ GP +++ +T+ V + L+ G S + AE AAK AL++
Sbjct: 186 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQ 234
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 58 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 118 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154
>gi|195116871|ref|XP_002002975.1| GI17670 [Drosophila mojavensis]
gi|193913550|gb|EDW12417.1| GI17670 [Drosophila mojavensis]
Length = 96
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 67/79 (84%)
Query: 108 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 167
+FP+ EEGGLA Y AAIVQNQH A LAK++ LE+FMLYA G D+CHE+EL+HAM +CFE
Sbjct: 1 MFPEQEEGGLAMYSAAIVQNQHCALLAKKLQLEEFMLYAQGLDMCHELELRHAMVSCFED 60
Query: 168 LMGALFLDGGIDVADQVFS 186
LMGA+ LDGGI VAD+VF+
Sbjct: 61 LMGAILLDGGIMVADEVFT 79
>gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9]
gi|386086915|ref|YP_006002789.1| ribonuclease 3 [Streptococcus thermophilus ND03]
gi|386344992|ref|YP_006041156.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
gi|387910019|ref|YP_006340325.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
gi|122267372|sp|Q03K17.1|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9]
gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03]
gi|339278453|emb|CCC20201.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
gi|387574954|gb|AFJ83660.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
Length = 229
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 64 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G+ DI
Sbjct: 124 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVI-DYKTALQE-----RLQVNGKVDI 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y VI+ GP +++ +T+ V + L+ G S + AE AAK AL++
Sbjct: 178 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQ 226
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 50 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 110 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146
>gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
gi|254807900|sp|C0M8Y3.1|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
Length = 230
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 128/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE S + F+ RLL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEALLENSFNIRFDDKRLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS++V R +S+ F A I + + K R
Sbjct: 59 SEYLFAKYPKQTEGDMSKLRSTIV--REESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E +F P++ ++ K K + C L+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQV------EQGTFEKVKDYKTC--LQEL 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + VAV + L+K TG S + AE +AAK AL +
Sbjct: 169 LQAKGDVVIDYQVISETGPAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD GI+ + + V+
Sbjct: 110 GGRHRDTILGDLFEAFLGALLLDKGIEEVRRFLNQVM 146
>gi|406886530|gb|EKD33543.1| ribonuclease III [uncultured bacterium]
Length = 230
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 14/230 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+ LE GV F + +L + RS + + +LG N+RLEFLGD VL+L+ ++ L+
Sbjct: 5 ISKLEKIIGVTFLNKDILRQAVVHRSYLNEHPDFSLGHNERLEFLGDAVLELVVTENLFG 64
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV-DLKMKDR----ADLLE 341
++ + EG L+ R++LVN + + +IG+ F + + D K K R A+ +E
Sbjct: 65 NYT-NPEGELTNWRAALVNAEMLAKIAQEIGIEEFLYLSKGEAKDAKSKARKYILANAME 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y+DKG E+ ++F RL + + ++ + DPKS+ Q+ +
Sbjct: 124 AVIGAVYLDKGWESSKEFIGKFVLSRLAHILEHKLYIDPKSRFQEASQERLGI------T 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P YKVIE GP + + + V V+ + +A G+S Q+A++ AA+ A+ +
Sbjct: 178 PSYKVIEETGPDHDKKFVVGVFLNKDLVATGEGSSKQEAQVEAAEHAIDE 227
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 20/147 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG-SDL 151
G+ + + + +LF + + EG L +RAA+V + LA +A+ IG+E+F+ + G +
Sbjct: 50 GDAVLELVVTENLFGNYTN-PEGELTNWRAALVNAEMLAKIAQEIGIEEFLYLSKGEAKD 108
Query: 152 CHEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKDNEVRFKQ 199
K+ +AN EA++GA++LD G + + + + LY D + RF++
Sbjct: 109 AKSKARKYILANAMEAVIGAVYLDKGWESSKEFIGKFVLSRLAHILEHKLYIDPKSRFQE 168
Query: 200 WM-----YYPQHP-LQEQEPDGDRQWV 220
P + ++E PD D+++V
Sbjct: 169 ASQERLGITPSYKVIEETGPDHDKKFV 195
>gi|422858043|ref|ZP_16904693.1| ribonuclease III [Streptococcus sanguinis SK1057]
gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057]
Length = 232
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFADETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEITYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKESSSC 231
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>gi|406920540|gb|EKD58587.1| hypothetical protein ACD_56C00093G0011 [uncultured bacterium]
Length = 227
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
GV F++I LL + T RS N L N+RLEFLGD VL+LI ++YLYN+F + EG
Sbjct: 10 GVKFDNIELLRQAVTHRSYLNENRDYALDHNERLEFLGDAVLELIITEYLYNNF-RNPEG 68
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMY 348
L+ RS+LVN + V +IG+ F ++ + + K R A+ LEA +GA Y
Sbjct: 69 ELTSWRSALVNGEMLAHVAQEIGVEKF--LLMSRGEAKDTGRARQYLLANALEAIIGATY 126
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G E ++F +L+ + + + DPKS Q+ + P Y+V++
Sbjct: 127 LDQGYEVSKKFVLGNVATQLKEILEKKLYLDPKSYFQEKAQENNKV------TPSYRVMK 180
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + + + V V+ +E +A+ GNS Q+A+ AA+ L+
Sbjct: 181 EWGPDHDKHFIVGVFLSDELVAEGDGNSKQEAQREAARKGLE 222
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I + +L++ F + EG L ++R+A+V + LAH+A+ IG+E F+L + G
Sbjct: 47 GDAVLELIITEYLYNNFRN-PEGELTSWRSALVNGEMLAHVAQEIGVEKFLLMSRGEAKD 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
++ +AN EA++GA +LD G +V+ + V +V + E+ K+ P+ QE+
Sbjct: 106 TGRARQYLLANALEAIIGATYLDQGYEVSKKFVLGNVATQLKEILEKKLYLDPKSYFQEK 165
Query: 212 EPDGDR 217
+ ++
Sbjct: 166 AQENNK 171
>gi|347534362|ref|YP_004841032.1| ribonuclease 3 [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504418|gb|AEN99100.1| Ribonuclease 3 [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 247
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 13/220 (5%)
Query: 238 VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
+ FN+ LL FT S + + L +RLEFLGD V QL+ SDY++ +PE +G
Sbjct: 26 IKFNNEELLDEAFTQASYVNEHPDQDLKFYERLEFLGDAVYQLVVSDYIFKRYPEMPQGR 85
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDK 351
L+ LR+++VN + S + + + + + R D+ E+F+GA+Y+D+
Sbjct: 86 LTRLRAAMVNRLSFSRFARECHFDKYIRLGKGEEKAGARKRDSLLCDIFESFIGAVYLDQ 145
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G+E + FC + FP+L N E+ D K++LQ+ ++G P YK+++ G
Sbjct: 146 GIETVKHFCNLVIFPKLDEGWFN-EFFDHKTELQEAV----QING--PVKIEYKLLDENG 198
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P N R + VAV+ ++ L G+S + AE A+K+AL K
Sbjct: 199 PDNDRQFKVAVFVDDQELGVGEGHSKKNAEQLASKMALDK 238
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S ++F +P++ +G L RAA+V + A+ + ++ G +
Sbjct: 62 GDAVYQLVVSDYIFKRYPEMPQGRLTRLRAAMVNRLSFSRFARECHFDKYIRLGKGEEKA 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQH----- 206
+ + + FE+ +GA++LD GI+ + V++ K +E F ++ +
Sbjct: 122 GARKRDSLLCDIFESFIGAVYLDQGIETVKHFCNLVIFPKLDEGWFNEFFDHKTELQEAV 181
Query: 207 ----P-------LQEQEPDGDRQW 219
P L E PD DRQ+
Sbjct: 182 QINGPVKIEYKLLDENGPDNDRQF 205
>gi|407010671|gb|EKE25500.1| hypothetical protein ACD_5C00137G0005 [uncultured bacterium]
Length = 229
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 17/233 (7%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL--TLGSNQRLEFLGDTVLQLITSDY 283
++ ++ L GV FN I +L + T RS N L N+RLEFLGD VL+LI ++Y
Sbjct: 1 MQMVESLAKKIGVEFNDIEILRQAVTHRSFLNENRDHNLEHNERLEFLGDAVLELIITEY 60
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
LYN++ ++ EG L+ RS+LVN + V +IG+ F ++ + + K R A
Sbjct: 61 LYNNY-KNPEGELTSWRSALVNGEMLAHVAQEIGVEEF--LLMSRGEAKDTGRARQYLLA 117
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
+ +EA +GA Y+D+G E ++F RL+ + + + DPKS Q+ +
Sbjct: 118 NAMEAIIGATYLDQGYETSKKFVLDNVAVRLREILEKKLYLDPKSYFQEKAQENSKV--- 174
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P Y+V++ GP + + + V V+ +E +A+ GNS Q+A+ AA+ L+
Sbjct: 175 ---TPSYRVMKEWGPDHDKHFIVGVFLSDELVAEGEGNSKQEAQREAARKGLE 224
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I + +L++ + + EG L ++R+A+V + LAH+A+ IG+E+F+L + G
Sbjct: 49 GDAVLELIITEYLYNNYKN-PEGELTSWRSALVNGEMLAHVAQEIGVEEFLLMSRGEAKD 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
++ +AN EA++GA +LD G + + + V +V + E+ K+ P+ QE+
Sbjct: 108 TGRARQYLLANAMEAIIGATYLDQGYETSKKFVLDNVAVRLREILEKKLYLDPKSYFQEK 167
>gi|406992432|gb|EKE11799.1| hypothetical protein ACD_15C00026G0018 [uncultured bacterium]
Length = 229
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 16/223 (7%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G+ FN+I +L + T RS + + L N+RLEFLGD VL+L+ +++LY ++P + EG
Sbjct: 10 GIKFNNIDILQQAVTHRSYLNEHRDYKLDHNERLEFLGDAVLELVVTEFLYENYP-NPEG 68
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ R++LVN + + +G+ F + + K R A+ EA GA+Y+D
Sbjct: 69 ELTNWRAALVNGEMLAKISGKLGVEEFLMMSRGETKDTGKARQYLLANAFEAITGAIYLD 128
Query: 351 K---GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
+ G +A + F L I N+ + DPKS+ Q+ + P YKVI
Sbjct: 129 QKESGYKAAKDFIMKNVIVELPEIIENKSYMDPKSRFQEEAQDKVGI------TPSYKVI 182
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
E GP ++R + V +Y +E ++K G S Q+A+ NAA L+
Sbjct: 183 EESGPDHARKFVVGLYLGHELVSKGEGFSKQEAQRNAAAAGLE 225
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 71 VGVVLFVISVIQ---IYRMYMYIHK-------------GNNFSQFITSIHLFHVFPDIEE 114
+G+ I ++Q +R Y+ H+ G+ + + + L+ +P+ E
Sbjct: 9 IGIKFNNIDILQQAVTHRSYLNEHRDYKLDHNERLEFLGDAVLELVVTEFLYENYPN-PE 67
Query: 115 GGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL 174
G L +RAA+V + LA ++ ++G+E+F++ + G ++ +AN FEA+ GA++L
Sbjct: 68 GELTNWRAALVNGEMLAKISGKLGVEEFLMMSRGETKDTGKARQYLLANAFEAITGAIYL 127
Query: 175 D----GGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPD 214
D G D + +V+ + E+ + P+ QE+ D
Sbjct: 128 DQKESGYKAAKDFIMKNVIVELPEIIENKSYMDPKSRFQEEAQD 171
>gi|357636754|ref|ZP_09134629.1| ribonuclease III [Streptococcus macacae NCTC 11558]
gi|357585208|gb|EHJ52411.1| ribonuclease III [Streptococcus macacae NCTC 11558]
Length = 231
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 19/224 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F +LL FT S Y N L + N+RLEFLGD VLQLI S YL+ +P
Sbjct: 13 GIVFADKKLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLIISRYLFLKYPHKA 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS +RS +V + + + G + + + + R DL EAFLGA++
Sbjct: 71 EGELSKMRSMIVREESLAGFSKNCGFDHYIKLGKGEERSGGRSRTTILGDLFEAFLGALF 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVI 407
+D G EA E F P ++ ++ D K+ LQ+ L +DG DI I Y+V+
Sbjct: 131 LDAGAEAVESFLNQIMIPLVEAGDYDRVM-DYKTALQE----LLQVDG---DILIDYQVV 182
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP + +++ VAV N+ L+K G S + AE AAK AL+K
Sbjct: 183 SETGPAHEKNFEVAVSANNDILSKGNGKSKKIAEQEAAKKALEK 226
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L+ R+ IV+ + LA +K G + ++ G +
Sbjct: 50 GDAVLQLIISRYLFLKYPHKAEGELSKMRSMIVREESLAGFSKNCGFDHYIKLGKGEERS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GALFLD G + + + ++
Sbjct: 110 GGRSRTTILGDLFEAFLGALFLDAGAEAVESFLNQIM 146
>gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583]
gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1]
gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2]
gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3]
gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1]
gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6]
gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11]
gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98]
gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1]
gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428768209|ref|YP_007154320.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|75541427|sp|Q82ZG1.1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583]
gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1]
gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2]
gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3]
gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1]
gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6]
gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11]
gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98]
gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1]
gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76]
gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186382|emb|CCO73606.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 230
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 19/226 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F+ + LL + FT S Y N L L N+RLEFLGD VL+LI S YLY FPE
Sbjct: 14 GIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELP 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG L+ +R+++V + + + + + + + RA DL EAFLGA+Y
Sbjct: 72 EGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAFLGALY 131
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVI 407
+D+ + A ++F + FP++ + E D K++LQ+ + D+ I Y++I
Sbjct: 132 LDQKVGAAKKFIEDVIFPKIDAGAFSHEM-DHKTQLQEVLQR-------KGDVSIEYRLI 183
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ GP + R++ VY E + G S + AE +AA+ AL+ P
Sbjct: 184 KEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIP 229
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ FP++ EG L RAAIV+ LA AK ++++L G +
Sbjct: 51 GDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEAS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD + A + V++
Sbjct: 111 GGRTRASLLCDLFEAFLGALYLDQKVGAAKKFIEDVIF 148
>gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8]
gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712]
gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613]
gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248]
gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855]
gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860]
gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109]
gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411]
gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470]
gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635]
gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102]
gi|384514329|ref|YP_005709422.1| ribonuclease III [Enterococcus faecalis OG1RF]
gi|384516896|ref|YP_005704201.1| ribonuclease III [Enterococcus faecalis 62]
gi|397701246|ref|YP_006539034.1| ribonuclease III [Enterococcus faecalis D32]
gi|422687023|ref|ZP_16745213.1| ribonuclease III [Enterococcus faecalis TX4000]
gi|422689979|ref|ZP_16748069.1| ribonuclease III [Enterococcus faecalis TX0630]
gi|422692405|ref|ZP_16750426.1| ribonuclease III [Enterococcus faecalis TX0031]
gi|422696091|ref|ZP_16754068.1| ribonuclease III [Enterococcus faecalis TX4244]
gi|422698495|ref|ZP_16756387.1| ribonuclease III [Enterococcus faecalis TX1346]
gi|422700459|ref|ZP_16758306.1| ribonuclease III [Enterococcus faecalis TX1342]
gi|422704076|ref|ZP_16761891.1| ribonuclease III [Enterococcus faecalis TX1302]
gi|422708000|ref|ZP_16765534.1| ribonuclease III [Enterococcus faecalis TX0043]
gi|422711137|ref|ZP_16768070.1| ribonuclease III [Enterococcus faecalis TX0027]
gi|422713897|ref|ZP_16770645.1| ribonuclease III [Enterococcus faecalis TX0309A]
gi|422718478|ref|ZP_16775131.1| ribonuclease III [Enterococcus faecalis TX0309B]
gi|422720836|ref|ZP_16777443.1| ribonuclease III [Enterococcus faecalis TX0017]
gi|422723566|ref|ZP_16780101.1| ribonuclease III [Enterococcus faecalis TX2137]
gi|422725696|ref|ZP_16782154.1| ribonuclease III [Enterococcus faecalis TX0312]
gi|422728465|ref|ZP_16784882.1| ribonuclease III [Enterococcus faecalis TX0012]
gi|422732835|ref|ZP_16789164.1| ribonuclease III [Enterococcus faecalis TX0645]
gi|422736033|ref|ZP_16792298.1| ribonuclease III [Enterococcus faecalis TX1341]
gi|422738680|ref|ZP_16793871.1| ribonuclease III [Enterococcus faecalis TX2141]
gi|422868345|ref|ZP_16914888.1| ribonuclease III [Enterococcus faecalis TX1467]
gi|424674100|ref|ZP_18111026.1| ribonuclease III [Enterococcus faecalis 599]
gi|424677347|ref|ZP_18114199.1| ribonuclease III [Enterococcus faecalis ERV103]
gi|424681039|ref|ZP_18117835.1| ribonuclease III [Enterococcus faecalis ERV116]
gi|424685288|ref|ZP_18121988.1| ribonuclease III [Enterococcus faecalis ERV129]
gi|424688592|ref|ZP_18125197.1| ribonuclease III [Enterococcus faecalis ERV25]
gi|424690566|ref|ZP_18127098.1| ribonuclease III [Enterococcus faecalis ERV31]
gi|424694302|ref|ZP_18130705.1| ribonuclease III [Enterococcus faecalis ERV37]
gi|424697969|ref|ZP_18134281.1| ribonuclease III [Enterococcus faecalis ERV41]
gi|424701524|ref|ZP_18137696.1| ribonuclease III [Enterococcus faecalis ERV62]
gi|424704525|ref|ZP_18140620.1| ribonuclease III [Enterococcus faecalis ERV63]
gi|424711652|ref|ZP_18143864.1| ribonuclease III [Enterococcus faecalis ERV65]
gi|424716431|ref|ZP_18145742.1| ribonuclease III [Enterococcus faecalis ERV68]
gi|424721947|ref|ZP_18151014.1| ribonuclease III [Enterococcus faecalis ERV72]
gi|424724735|ref|ZP_18153673.1| ribonuclease III [Enterococcus faecalis ERV73]
gi|424727557|ref|ZP_18156186.1| ribonuclease III [Enterococcus faecalis ERV81]
gi|424744501|ref|ZP_18172795.1| ribonuclease III [Enterococcus faecalis ERV85]
gi|424753913|ref|ZP_18181842.1| ribonuclease III [Enterococcus faecalis ERV93]
gi|424759045|ref|ZP_18186718.1| ribonuclease III [Enterococcus faecalis R508]
gi|430360155|ref|ZP_19426132.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|430366186|ref|ZP_19427367.1| ribonuclease III [Enterococcus faecalis M7]
gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8]
gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712]
gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613]
gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411]
gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109]
gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860]
gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855]
gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248]
gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102]
gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635]
gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470]
gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137]
gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000]
gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017]
gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027]
gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141]
gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244]
gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012]
gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031]
gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043]
gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312]
gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645]
gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302]
gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341]
gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342]
gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346]
gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B]
gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630]
gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A]
gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62]
gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF]
gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467]
gi|397337885|gb|AFO45557.1| ribonuclease III [Enterococcus faecalis D32]
gi|402352044|gb|EJU86909.1| ribonuclease III [Enterococcus faecalis 599]
gi|402352426|gb|EJU87277.1| ribonuclease III [Enterococcus faecalis ERV116]
gi|402354640|gb|EJU89443.1| ribonuclease III [Enterococcus faecalis ERV103]
gi|402359269|gb|EJU93911.1| ribonuclease III [Enterococcus faecalis ERV129]
gi|402360051|gb|EJU94660.1| ribonuclease III [Enterococcus faecalis ERV25]
gi|402363764|gb|EJU98222.1| ribonuclease III [Enterococcus faecalis ERV31]
gi|402370958|gb|EJV05137.1| ribonuclease III [Enterococcus faecalis ERV37]
gi|402371555|gb|EJV05712.1| ribonuclease III [Enterococcus faecalis ERV62]
gi|402374205|gb|EJV08241.1| ribonuclease III [Enterococcus faecalis ERV41]
gi|402381547|gb|EJV15250.1| ribonuclease III [Enterococcus faecalis ERV63]
gi|402383084|gb|EJV16701.1| ribonuclease III [Enterococcus faecalis ERV65]
gi|402387948|gb|EJV21400.1| ribonuclease III [Enterococcus faecalis ERV68]
gi|402389984|gb|EJV23356.1| ribonuclease III [Enterococcus faecalis ERV72]
gi|402393981|gb|EJV27183.1| ribonuclease III [Enterococcus faecalis ERV73]
gi|402396232|gb|EJV29301.1| ribonuclease III [Enterococcus faecalis ERV81]
gi|402398832|gb|EJV31749.1| ribonuclease III [Enterococcus faecalis ERV85]
gi|402403439|gb|EJV36113.1| ribonuclease III [Enterococcus faecalis ERV93]
gi|402405221|gb|EJV37819.1| ribonuclease III [Enterococcus faecalis R508]
gi|429513067|gb|ELA02660.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|429517200|gb|ELA06667.1| ribonuclease III [Enterococcus faecalis M7]
Length = 243
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 19/226 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F+ + LL + FT S Y N L L N+RLEFLGD VL+LI S YLY FPE
Sbjct: 27 GIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELP 84
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG L+ +R+++V + + + + + + + RA DL EAFLGA+Y
Sbjct: 85 EGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAFLGALY 144
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVI 407
+D+ + A ++F + FP++ + E D K++LQ+ + D+ I Y++I
Sbjct: 145 LDQKVGAAKKFIEDVIFPKIDAGAFSHEM-DHKTQLQEVLQR-------KGDVSIEYRLI 196
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ GP + R++ VY E + G S + AE +AA+ AL+ P
Sbjct: 197 KEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIP 242
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ FP++ EG L RAAIV+ LA AK ++++L G +
Sbjct: 64 GDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEAS 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD + A + V++
Sbjct: 124 GGRTRASLLCDLFEAFLGALYLDQKVGAAKKFIEDVIF 161
>gi|195392365|ref|XP_002054828.1| GJ22577 [Drosophila virilis]
gi|194152914|gb|EDW68348.1| GJ22577 [Drosophila virilis]
Length = 233
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 70/85 (82%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+TN+LLLSQIAG+V+ ++LSLCI++P++++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALTNVLLLSQIAGHVLLFILSLCIVLPLSINLDQFCGHCLLFTTGKWREEDGMFDVHWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G+ L +ISV+QIYR
Sbjct: 61 SNGFCNFPLITGIFLLIISVVQIYR 85
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISE 522
FGAW +F+ VG+GV ALLKL HQ++N++VSMY ERQ L+++
Sbjct: 167 FGAWGAFAISVGIGVIALLKLIHNHQVRNIKVSMYLERQRLVNQ 210
>gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134]
gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134]
Length = 243
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 19/226 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F+ + LL + FT S Y N L L N+RLEFLGD VL+LI S YLY FPE
Sbjct: 27 GIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELP 84
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG L+ +R+++V + + + + + + + RA DL EAFLGA+Y
Sbjct: 85 EGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAFLGALY 144
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVI 407
+D+ + A ++F + FP++ + E D K++LQ+ + D+ I Y++I
Sbjct: 145 LDQKVGAAKKFIEDVIFPKIDAGAFSHEL-DHKTQLQEVLQR-------KGDVSIEYRLI 196
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ GP + R++ VY E + G S + AE +AA+ AL+ P
Sbjct: 197 KEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIP 242
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ FP++ EG L RAAIV+ LA AK ++++L G +
Sbjct: 64 GDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEAS 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD + A + V++
Sbjct: 124 GGRTRASLLCDLFEAFLGALYLDQKVGAAKKFIEDVIF 161
>gi|170051377|ref|XP_001861735.1| ribonuclease iii [Culex quinquefasciatus]
gi|167872672|gb|EDS36055.1| ribonuclease iii [Culex quinquefasciatus]
Length = 217
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 90/161 (55%), Gaps = 43/161 (26%)
Query: 314 NDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFIL 373
+D+G+ +A N K DLK KDRADLLEAFLGA+Y+DKG+
Sbjct: 61 DDLGITSYAVYSNKKADLKTKDRADLLEAFLGALYVDKGLNT------------------ 102
Query: 374 NQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT 433
+K C VIE GPTN+R YT+AVYF+ + LA +
Sbjct: 103 --------AKRSATC-----------------VIECNGPTNTRVYTMAVYFRGKHLACSN 137
Query: 434 GNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQK 474
G+SIQ+A++NAAK AL+ + PQLDHQKRVIA+S++ QK
Sbjct: 138 GHSIQEAKINAAKQALENSKDLFPQLDHQKRVIAQSLKRQK 178
>gi|406992829|gb|EKE12110.1| hypothetical protein ACD_14C00014G0001 [uncultured bacterium]
Length = 227
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
GV F +I LL + T RS N L N+RLEFLGD VL+LI ++YLYN++ ++ EG
Sbjct: 10 GVKFKNIELLRQAVTHRSYLNENRDYALNHNERLEFLGDAVLELIITEYLYNNY-KNPEG 68
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMY 348
L+ RS+LVN + V ++IG+ F ++ + + K R A+ LEA +GA Y
Sbjct: 69 ELTSWRSALVNGEMLAHVASEIGVEKF--LLMSRGEAKDTGRARQYLLANALEAIIGATY 126
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G E ++ +LQ + + + DPKS Q+ + P Y+V++
Sbjct: 127 LDQGYEVSKKLVLSHVAIKLQEILDKKLYLDPKSYFQEKAQENNKV------TPSYRVMK 180
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + + + V V+ +E +A+ GNS Q+A+ AA++ L+
Sbjct: 181 EWGPDHDKHFIVGVFLADELVAEGDGNSKQEAQREAARLGLE 222
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I + +L++ + + EG L ++R+A+V + LAH+A IG+E F+L + G
Sbjct: 47 GDAVLELIITEYLYNNYKN-PEGELTSWRSALVNGEMLAHVASEIGVEKFLLMSRGEAKD 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
++ +AN EA++GA +LD G +V+ + V S V K E+ K+ P+ QE+
Sbjct: 106 TGRARQYLLANALEAIIGATYLDQGYEVSKKLVLSHVAIKLQEILDKKLYLDPKSYFQEK 165
Query: 212 EPDGDR 217
+ ++
Sbjct: 166 AQENNK 171
>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
Length = 260
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 249 VFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNN 306
T RS+ G + L SN+RLEFLGD VL + + YLY HFP+ +EG L+ LR+ LVN
Sbjct: 46 ALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTRLRAKLVNR 105
Query: 307 RTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKV 362
+ +G+ + +D +D EA +GA+Y+D G+EA F +
Sbjct: 106 EALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLEAARAFVER 165
Query: 363 CFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAV 422
L L + ++ KS L + G P P Y+V+ GP+++R++TV
Sbjct: 166 ALLAPLDLEALARRPDNYKSLLLEFAQAR-----GWPQ-PRYRVVAEEGPSHARTFTVEA 219
Query: 423 YFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+ N RL + T S +QAE AA+ AL +
Sbjct: 220 WIGNRRLGRGTAGSKKQAEQQAAREALARL 249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + +L+ FPD EG L RA +V + LA A+R+GL + + +
Sbjct: 71 GDAVLGFVVAAYLYEHFPDRNEGFLTRLRAKLVNREALAQAARRLGLGAHVRLSENMERA 130
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +++ FEAL+GA++LD G++ A
Sbjct: 131 GGRDNDSILSDAFEALVGAIYLDLGLEAA 159
>gi|422859768|ref|ZP_16906412.1| ribonuclease III [Streptococcus sanguinis SK330]
gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330]
Length = 232
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFSDETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEIAYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGCKSGQGQGRSKKLAEQEAAKNAFKKESSSC 231
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>gi|345304499|ref|YP_004826401.1| ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
gi|345113732|gb|AEN74564.1| Ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
Length = 260
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 12/210 (5%)
Query: 249 VFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNN 306
T RS+ G + L SN+RLEFLGD VL + + YLY HFP+ +EG L+ LR+ LVN
Sbjct: 46 ALTHRSVLRGRPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTRLRAKLVNR 105
Query: 307 RTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKV 362
+ +G+ + +D +D EA +GA+Y+D G+EA F
Sbjct: 106 EALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLEAARAFVAR 165
Query: 363 CFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAV 422
L L + ++ KS L + G P P Y+V+ GP+++R++TV
Sbjct: 166 ALLAPLDLEALARRPDNYKSLLLEFAQAR-----GWPQ-PRYRVVAEEGPSHARTFTVEA 219
Query: 423 YFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+ N RL + T S +QAE AA+ AL +
Sbjct: 220 WIGNRRLGRGTAGSKKQAEQQAAREALARL 249
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + +L+ FPD EG L RA +V + LA A+R+GL + + +
Sbjct: 71 GDAVLGFVVAAYLYEHFPDRNEGFLTRLRAKLVNREALAQAARRLGLGAHVRLSENMERA 130
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ +++ FEAL+GA++LD G++ A + L
Sbjct: 131 GGRDNDSILSDAFEALVGAIYLDLGLEAARAFVARAL 167
>gi|322385039|ref|ZP_08058689.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
gi|417921883|ref|ZP_12565373.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
gi|321270949|gb|EFX53859.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
gi|342833768|gb|EGU68048.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
Length = 229
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 17/223 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+
Sbjct: 13 GLVFEDSSLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYKKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS LRS +V + + D F + + ++R DL EAFLGA+
Sbjct: 71 EGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DK +E + F P+++ Q D K+KLQ+ G+ +I +Y+V +
Sbjct: 131 LDKDVETVKAFIYQVMIPKVEAGDFEQ-VTDYKTKLQELLQV-----NGDVEI-VYQVTD 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP +++++ VAV ++ + G S + AE AAK A +K
Sbjct: 184 ETGPAHAKNFAVAVLINGQKAGQGQGRSKKLAEQEAAKDAFEK 226
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYKKYPKKPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ + FEA +GAL LD ++
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKDVET 137
>gi|195108347|ref|XP_001998754.1| GI23456 [Drosophila mojavensis]
gi|193915348|gb|EDW14215.1| GI23456 [Drosophila mojavensis]
Length = 233
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 70/85 (82%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+LLLSQIAG+V+ ++LSLCI++P++++ ++F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLLLSQIAGHVLLFILSLCIVLPLSINLNQFCGHCLLFTTGKWREEDGMFDVHWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + GV LF+ISV+QIYR
Sbjct: 61 SDGFCNFPLITGVFLFIISVVQIYR 85
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAW +F+ VG+GV ALLKL HQ++N++VSMY ERQ L+++ + P G +
Sbjct: 167 FGAWGAFAISVGIGVIALLKLIHNHQVRNIKVSMYLERQRLVNQQNFDGRSTPPLQSGAS 226
Query: 539 SE 540
S+
Sbjct: 227 SD 228
>gi|406960077|gb|EKD87256.1| hypothetical protein ACD_36C00174G0004 [uncultured bacterium]
Length = 228
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 11/229 (4%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTL-GSNQRLEFLGDTVLQLITSDYLYNHFPE 290
L+ G+ F LL F RS N + SN+RLEFLGD VL +TS++LY +P+
Sbjct: 6 LQKKVGIQFKDTALLKHAFIHRSYLNENKQITSSNERLEFLGDAVLSFLTSNFLYKTYPQ 65
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGA 346
+ EG L+ +RSSLV ++ V + G F + + + + AD EAFLGA
Sbjct: 66 YPEGVLTNIRSSLVKTQSLGDVAKTLNFGELLFLSRGEEESEGRKNSSLLADTFEAFLGA 125
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+++D+G+E ++F + F + + I ++ + D KS LQ+ + P Y+V
Sbjct: 126 LFLDQGIEKAQRFLEQYLFTKTSHVITSRSYIDFKSLLQEIIQEKSRIS------PTYRV 179
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+ GP +S+++ V +N L G S Q+AE AA AL+K I
Sbjct: 180 TKTEGPDHSKTFWVEAVMENNVLGIGKGKSKQEAEQQAATDALEKLGKI 228
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+TS L+ +P EG L R+++V+ Q L +AK + + + + G +
Sbjct: 47 GDAVLSFLTSNFLYKTYPQYPEGVLTNIRSSLVKTQSLGDVAKTLNFGELLFLSRGEEES 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ +A+ FEA +GALFLD GI+ A + L+
Sbjct: 107 EGRKNSSLLADTFEAFLGALFLDQGIEKAQRFLEQYLF 144
>gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15]
Length = 256
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 240 FNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
F ++ LL + FT S + + G N+RLEFLGD VL+L S YL+ H+PE EG L+
Sbjct: 42 FANVELLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQHYPERSEGELTK 101
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYIDKG 352
LR+++V + N F I+ K + R AD+ EAF+GA+Y+D+G
Sbjct: 102 LRAAIVCEPSLVQFANH--YEFSEMILLGKGEELTGGRNRPALLADVFEAFIGALYLDQG 159
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+EA E+F FP++ +E D KS+LQ+ ++ + G+ + Y++IE GP
Sbjct: 160 IEAAERFLAEAVFPKVASGFF-EEQTDFKSQLQEA---IQRVGLGQIE---YEIIEERGP 212
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+SR + V+ ++ TG S ++AE AAK AL
Sbjct: 213 AHSREFISRVHIADKLEGIGTGRSKKEAEQQAAKQAL 249
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P+ EG L RAAIV L A + +L G +L
Sbjct: 75 GDAVLELTVSRYLFQHYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELT 134
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD GI+ A++ + ++
Sbjct: 135 GGRNRPALLADVFEAFIGALYLDQGIEAAERFLAEAVF 172
>gi|407005717|gb|EKE21771.1| Ribonuclease III [uncultured bacterium]
Length = 230
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 17/229 (7%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT--LGSNQRLEFLGDTVLQLITSDY 283
+K LE + G+IF + +LL F RS N L SN++LEFLGD++L LITS Y
Sbjct: 1 MKNFNNLEKAIGIIFQNKKLLKNAFIHRSYLNENKKYHLNSNEKLEFLGDSILSLITSLY 60
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
LY +P EG + +++S+V +T+S+ + + + + K + K K R A
Sbjct: 61 LYQKYPSLQEGEYTNIKASIV--KTESLYESAKSLKLDSFLFLSKGEEKNKVRQNKSILA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFC-KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D LEA + ++++D+G E QF K F +L Y + N + PK++LQ+
Sbjct: 119 DCLEALIASIFLDRGFEITYQFVLKFIFINKLDYIVNNLLYLSPKNRLQEFW------QN 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+P YK+I+ +GP + + Y + ++ +++ + G S ++AE AA
Sbjct: 173 KYKKLPDYKIIKQIGPEHKKQYHIGIFINGKKIGEGIGFSKKEAEEKAA 221
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ ITS++L+ +P ++EG +A+IV+ + L AK + L+ F+ + G +
Sbjct: 49 GDSILSLITSLYLYQKYPSLQEGEYTNIKASIVKTESLYESAKSLKLDSFLFLSKGEEKN 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ K +A+C EAL+ ++FLD G ++ Q
Sbjct: 109 KVRQNKSILADCLEALIASIFLDRGFEITYQ 139
>gi|194742720|ref|XP_001953849.1| GF17973 [Drosophila ananassae]
gi|190626886|gb|EDV42410.1| GF17973 [Drosophila ananassae]
Length = 233
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 67/85 (78%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+LLLSQIAG+VI ++LSLCII+P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLLLSQIAGHVILFILSLCIIVPLFINLDQFCGHCLLFTTGKWREEDGMFDVQWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G L VISV+QIYR
Sbjct: 61 SSGFCNFPLITGFFLLVISVVQIYR 85
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISE 522
FGAW SF+ VG+GV ALLKL HQ++N++VSMY ERQ L+++
Sbjct: 167 FGAWGSFAISVGIGVIALLKLIDNHQVRNIKVSMYLERQRLVNQ 210
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 14/243 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 31 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 91 NSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L ++G +P Y V E GP + +++T
Sbjct: 151 HRLFDPLIEKSSNLGAGLDWKTSLQE----LTAIEG--LGVPEYLVTE-TGPDHEKTFTA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFG 480
A TG S ++AE AA+ A + +I D + +V + I+ E + G
Sbjct: 204 AARVGGVSYGTGTGRSKKEAEQQAAESAWR---AIRAAADERAKVAKEPIKETADEAVRG 260
Query: 481 AWA 483
+ A
Sbjct: 261 SQA 263
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 58 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ +A+ EA++GA++LD G+D A ++
Sbjct: 118 GGRDKASILADTLEAVIGAVYLDQGLDAASELV 150
>gi|422758515|ref|ZP_16812277.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 230
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 127/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L +S + F LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEELLAASFDICFEDQTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++ +F K+ P++ ++ N K K + C L+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGVDEVRRFLKLVMIPQV------EKGNFEKVKDYKTC--LQEL 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ DI I Y+VI GP +++ + VAV+ E L+K G S + AE +AAK AL +
Sbjct: 169 LQSKGDIAIDYQVISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ + FEA +GAL LD G+D
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVD 136
>gi|339448388|ref|ZP_08651944.1| ribonuclease III [Lactobacillus fructivorans KCTC 3543]
Length = 235
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 23/231 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNH 287
LE + FN LL T S Y N G +RLEFLGD V QL+ SDY++
Sbjct: 9 LEDKFNIKFNDESLLDEAMTQAS--YVNEHPGQGLKFYERLEFLGDAVYQLVVSDYIFRR 66
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN--PKVDLKMKDR--ADLLEAF 343
FPE +G L+ LR+++VN + S + + + K + + +D D+ E+F
Sbjct: 67 FPELPQGRLTRLRAAMVNEHSFSRFARECHFDKYIRLGKGEEKANARQRDSLLCDIFESF 126
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y+D+GM + FC++ FP+L + E+ D K++LQ+ + D P+
Sbjct: 127 IGAVYLDQGMATVKHFCEIVIFPKLDEGWFD-EFFDHKTELQEVV---------QEDGPV 176
Query: 404 ---YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+++ GP N R + VAV + + G+S + AE AAK AL +
Sbjct: 177 DLDYELVSEDGPDNDRKFKVAVKINGKEMGVGLGHSKKDAEQKAAKKALNE 227
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S ++F FP++ +G L RAA+V + A+ + ++ G +
Sbjct: 51 GDAVYQLVVSDYIFRRFPELPQGRLTRLRAAMVNEHSFSRFARECHFDKYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+ + + + FE+ +GA++LD G+
Sbjct: 111 NARQRDSLLCDIFESFIGAVYLDQGM 136
>gi|125775077|ref|XP_001358790.1| GA12396 [Drosophila pseudoobscura pseudoobscura]
gi|195144980|ref|XP_002013474.1| GL24158 [Drosophila persimilis]
gi|54638531|gb|EAL27933.1| GA12396 [Drosophila pseudoobscura pseudoobscura]
gi|194102417|gb|EDW24460.1| GL24158 [Drosophila persimilis]
Length = 233
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 67/85 (78%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+LLLSQIAG+VI ++LSLCI++P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLLLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G L +ISV+QIYR
Sbjct: 61 SNGFCNFPLITGFFLLIISVVQIYR 85
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISE 522
FGAW SF+ VG+GV ALLKL HQ++N++VSMY ERQ L+++
Sbjct: 167 FGAWGSFAICVGIGVIALLKLIDNHQVRNIKVSMYLERQRLVNQ 210
>gi|357236837|ref|ZP_09124180.1| ribonuclease III [Streptococcus criceti HS-6]
gi|356884819|gb|EHI75019.1| ribonuclease III [Streptococcus criceti HS-6]
Length = 230
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 17/228 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
+ L+ G++F LL FT S Y N L + N+RLEFLGD VLQL+ S YL+
Sbjct: 6 KKLQADFGIVFKDSSLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISRYLF 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
FP+ EG LS +RS +V + + D G F + + +DR DL E
Sbjct: 64 AKFPKKPEGDLSKMRSMIVREESLAGFSKDCGFESFIKLGKGEEKSGGRDRETILGDLFE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+ +D+G+ A E+F P+++ + D K+ LQ+ L P
Sbjct: 124 AFLGALDLDQGISAVEKFLNQVMIPKVEAGDY-ERVKDYKTALQE------KLQVNGPVQ 176
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+VI GP +++ + V V + L++ G S + AE AAK AL
Sbjct: 177 ISYRVINETGPAHNKKFEVVVSADGQDLSQGQGKSKKLAEQAAAKTAL 224
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF FP EG L+ R+ IV+ + LA +K G E F+ G +
Sbjct: 50 GDAVLQLLISRYLFAKFPKKPEGDLSKMRSMIVREESLAGFSKDCGFESFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV----RFKQWMYYPQHPL 208
+ + + + FEA +GAL LD GI ++ + V+ E R K + Q L
Sbjct: 110 GGRDRETILGDLFEAFLGALDLDQGISAVEKFLNQVMIPKVEAGDYERVKDYKTALQEKL 169
Query: 209 QEQEP 213
Q P
Sbjct: 170 QVNGP 174
>gi|357238456|ref|ZP_09125793.1| ribonuclease III [Streptococcus ictaluri 707-05]
gi|356753179|gb|EHI70300.1| ribonuclease III [Streptococcus ictaluri 707-05]
Length = 230
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 25/241 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
LK+L L+ S + F LL FT S Y N L + N+RLEFLGD VLQLI S
Sbjct: 4 LKEL--LKESFAISFTDKSLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLIIS 59
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
+YL++ +P+ +EG +S LRS +V R +S+ F +I K + K R
Sbjct: 60 EYLFDKYPKKNEGDMSKLRSMIV--REESLAGFSRFCSFDTHIKLGKGEEKSGGRNRDMI 117
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
DL EAFLGA+ +DKG++ +F P+++ ++ D K+ LQ+ +
Sbjct: 118 LGDLFEAFLGALLLDKGVDEVRRFLNQVMIPQVEQGNF-EKVKDYKTSLQELLQS----- 171
Query: 396 GGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
DI I Y+VI GP +++ + VA++ + ++K G S + AE NAAK AL +
Sbjct: 172 --NGDITIDYQVISESGPAHAKQFEVAIFVNDSIISKGLGKSKKMAEQNAAKKALAQLSE 229
Query: 455 I 455
+
Sbjct: 230 V 230
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + + G +
Sbjct: 50 GDAVLQLIISEYLFDKYPKKNEGDMSKLRSMIVREESLAGFSRFCSFDTHIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G+D + + V+
Sbjct: 110 GGRNRDMILGDLFEAFLGALLLDKGVDEVRRFLNQVM 146
>gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes SF370]
gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232]
gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315]
gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1]
gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096]
gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750]
gi|383479622|ref|YP_005388516.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS15252]
gi|383493542|ref|YP_005411218.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS1882]
gi|410680121|ref|YP_006932523.1| ribonuclease III [Streptococcus pyogenes A20]
gi|417857343|ref|ZP_12502402.1| ribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
gi|421893410|ref|ZP_16323923.1| Ribonuclease III [Streptococcus pyogenes NS88.2]
gi|54039245|sp|P66672.1|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54041616|sp|P66670.1|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043363|sp|Q1JCZ9.1|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043364|sp|Q1JMX4.1|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043366|sp|Q1J7V3.1|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|342179219|sp|P0DF14.1|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|342179220|sp|P0DF15.1|RNC_STRPQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS]
gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232]
gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315]
gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1]
gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096]
gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750]
gi|378927612|gb|AFC65818.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS15252]
gi|378929270|gb|AFC67687.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS1882]
gi|379980842|emb|CCG27645.1| Ribonuclease III [Streptococcus pyogenes NS88.2]
gi|387934298|gb|EIK42411.1| ribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
gi|395453490|dbj|BAM29829.1| ribonuclease III [Streptococcus pyogenes M1 476]
gi|409692710|gb|AFV37570.1| ribonuclease III [Streptococcus pyogenes A20]
Length = 230
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|406949445|gb|EKD79928.1| Ribonuclease III [uncultured bacterium]
Length = 231
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 20/235 (8%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
PLL QL + +I H + R + S + SN+RLE+LGD VL+LI S Y
Sbjct: 8 PLLSQLNLTPKNEHLI--HNAFVHRSYLNESKDFEE----SNERLEYLGDAVLELIVSQY 61
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
L+ +P+ EG L+ LR++LV + ++V ++G P ++ K + R A
Sbjct: 62 LFESYPDFQEGMLTNLRAALVRTESLALVATELGFPPL--LLMSKGEEATGGRQNISILA 119
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D EAFLGA+Y+D+G+ C+Q +V P+ + + Q + D KS LQ+
Sbjct: 120 DTFEAFLGALYLDQGLVPCQQILEVHLLPQTKTILKTQAYKDNKSLLQEIA------QAR 173
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
P+Y ++ GP + +++ + V + A+ G S Q A+ +AA L++
Sbjct: 174 YKATPLYSLLTESGPDHDKNFVMQVTIDGKNYAEGQGKSKQAAQEDAAYHTLEQI 228
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 22/150 (14%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +LF +PD +EG L RAA+V+ + LA +A +G +L + G +
Sbjct: 50 GDAVLELIVSQYLFESYPDFQEGMLTNLRAALVRTESLALVATELGFPPLLLMSKGEEAT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKDN------- 193
+ +A+ FEA +GAL+LD G+ Q+ L YKDN
Sbjct: 110 GGRQNISILADTFEAFLGALYLDQGLVPCQQILEVHLLPQTKTILKTQAYKDNKSLLQEI 169
Query: 194 -EVRFKQWMYYPQHPLQEQEPDGDRQWVEQ 222
+ R+K Y L E PD D+ +V Q
Sbjct: 170 AQARYKATPLYSL--LTESGPDHDKNFVMQ 197
>gi|195443818|ref|XP_002069589.1| GK11600 [Drosophila willistoni]
gi|194165674|gb|EDW80575.1| GK11600 [Drosophila willistoni]
Length = 235
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+LLLSQI G+VI ++LSLCI++P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLLLSQITGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVNWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G+ L +IS++QIYR
Sbjct: 61 SPGFCNFPLITGIFLLIISIVQIYR 85
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISE 522
FGAW SF+ VG+GV ALLKL HQ++N++VSMY ERQ L+++
Sbjct: 167 FGAWGSFAISVGIGVIALLKLINNHQVRNIKVSMYLERQRLVNQ 210
>gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
gi|90101651|sp|Q48UR6.1|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
Length = 230
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++A +F K P+++ + D K+ LQ+ T
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNF-ERVRDYKTCLQEFLQT---- 171
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 172 ---KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R + + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVRDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2]
gi|357049077|ref|ZP_09110306.1| ribonuclease 3 [Enterococcus saccharolyticus 30_1]
gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2]
gi|355384377|gb|EHG31445.1| ribonuclease 3 [Enterococcus saccharolyticus 30_1]
Length = 230
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 15/225 (6%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
L+ G++F+ + LL + FT S + NL L N+RLEFLGD VL+LI S YLY P
Sbjct: 9 LKEDYGIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVSRYLYRELP 68
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLG 345
+ EG L+ LR+++V + S+ D + + + + + R DL EAFLG
Sbjct: 69 DLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENSGGRKRPSLLCDLFEAFLG 128
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-Y 404
A+Y+D+G+E+ + F FP+++ + E D K++LQ+ D+ I Y
Sbjct: 129 ALYLDQGLESVDGFLTAVVFPKVKAGAFSHEM-DHKTRLQEVLQR-------SGDVSINY 180
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
++ + GP + R + VY + + + G S + +E AA+ AL
Sbjct: 181 RLTKEEGPAHERIFWTEVYCDDVLIGEGQGKSKKLSEQAAAENAL 225
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ PD+ EG L RAAIV+ L+ AK + ++ G +
Sbjct: 51 GDAVLELIVSRYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FEA +GAL+LD G++ D ++V++
Sbjct: 111 GGRKRPSLLCDLFEAFLGALYLDQGLESVDGFLTAVVF 148
>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
Length = 241
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 16/231 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS--NQRLEFLGDTVLQLITSDYLY 285
+L+ L+ GV F+ + +L + F S Y NQRLEFLGD VL+L+ S+++Y
Sbjct: 10 ELKKLQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIY 69
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADL 339
+ +P + EG L+ LR+ LV + + + ++ + F +I K + R AD
Sbjct: 70 DKYPNYTEGELTKLRALLVCEESLAYLSRELTLGDF--LIMGKGEEITGGREKASILADT 127
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
EA +GAMY+DKG A F + F P ++ + + D K+ LQ+ + P
Sbjct: 128 FEALIGAMYLDKGFGAITGFVREKFKPVMERAEKGKLFPDYKTALQEMLQRI------SP 181
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
D Y VI+ GP +++++ V V +KN+ L G S ++AE NAAK A++
Sbjct: 182 DRITYNVIKEEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAAKAAIR 232
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S ++ +P+ EG L RA +V + LA+L++ + L DF++ G ++
Sbjct: 56 GDAVLELVISEWIYDKYPNYTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKGEEIT 115
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV----ADQVFSSVLYKDNEVR-FKQWMYYPQHP 207
E +A+ FEAL+GA++LD G + F V+ + + + F + Q
Sbjct: 116 GGREKASILADTFEALIGAMYLDKGFGAITGFVREKFKPVMERAEKGKLFPDYKTALQEM 175
Query: 208 LQEQEPD 214
LQ PD
Sbjct: 176 LQRISPD 182
>gi|374338458|ref|YP_005095172.1| ribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284572|emb|CCF02857.1| Ribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 228
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 19/227 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
L+ G++F LL FT S Y N L + N+RLEFLGD VLQL+ S YL+
Sbjct: 8 LQRDFGIVFEDKTLLKTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLFKK 65
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+P+ EG LS +RS +V + + G F + N + ++R DL EAF
Sbjct: 66 YPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILGDLFEAF 125
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+ +D+G+EA ++F P+++ + D K+ LQ+ G D+ I
Sbjct: 126 LGALLMDQGVEAVKKFLNQVMIPQVEKGNF-ERVKDYKTTLQELLQ-------GHGDVTI 177
Query: 404 -YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+V GP +++ + V VY +E ++ G S + AE +AAK AL
Sbjct: 178 DYRVSNESGPAHAKVFEVTVYINDEAKSQGIGRSKKLAEQDAAKNAL 224
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G ++F+ +G +
Sbjct: 50 GDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL +D G++ + + V+ K N R K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLMDQGVEAVKKFLNQVMIPQVEKGNFERVKDYKTTLQELL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
Length = 234
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 12/232 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
++L+ L+ + F + LL R T +S N L L N+RLEFLGD+VL ++ S+Y+
Sbjct: 8 EKLEELQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEYM 67
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
+N +P++ EG L+ +R+S+V+ T + ++ + + + + + + R AD
Sbjct: 68 FNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSILADAF 127
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +G++Y+D+ ++ E F ++ + D K+ LQ+
Sbjct: 128 EALVGSIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTTLQEMIQKRSNAR----- 182
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
P Y VIE GP +S+ +TV V F + L + TG+S ++A+ AAK AL+K
Sbjct: 183 -PEYYVIEEKGPDHSKEFTVEVKFNDRSLGEGTGSSKKEAQQQAAKNALKKL 233
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S ++F+ +PD EG LA RA++V LA A+ + L ++L HG ++
Sbjct: 55 GDSVLDIVVSEYMFNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMT 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+ +A+ FEAL+G+++LD +D+A+ ++ D E
Sbjct: 115 GGRKRSSILADAFEALVGSIYLDQDLDIAEDFIMKLMKVDIE 156
>gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394]
gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49
591]
gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131]
gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis]
gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
gi|386362306|ref|YP_006071637.1| ribonuclease III [Streptococcus pyogenes Alab49]
gi|73917584|sp|Q5XDA6.1|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043367|sp|A2RFW8.1|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226741379|sp|B5XKB7.1|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394]
gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131]
gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis]
gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
gi|350276715|gb|AEQ24083.1| ribonuclease III [Streptococcus pyogenes Alab49]
Length = 230
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVVIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|194910056|ref|XP_001982065.1| GG12385 [Drosophila erecta]
gi|190656703|gb|EDV53935.1| GG12385 [Drosophila erecta]
Length = 233
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+L LSQIAG+VI ++LSLCI++P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVKWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G+ L +ISV+QIYR
Sbjct: 61 SNGFCNFPLITGIFLLIISVVQIYR 85
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAW SF+ VG+GV ALLKL HQ++N++VSMY ERQ L+++ + P G+
Sbjct: 167 FGAWGSFAISVGIGVIALLKLIDNHQVRNIKVSMYLERQRLVNQQQYDGRSTPPILSNGS 226
Query: 539 SEGTSAQN 546
S+ S QN
Sbjct: 227 SD--SEQN 232
>gi|407005250|gb|EKE21424.1| hypothetical protein ACD_7C00251G0010 [uncultured bacterium]
Length = 229
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 12/222 (5%)
Query: 235 SSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
S G+ FN+ L+ T RS N L N+RLEFLGD VL+LI +DYL+ ++ +
Sbjct: 9 SIGIEFNNPDLIQEALTHRSYLNENKKYKLNHNERLEFLGDAVLELIVTDYLFKNYSNNQ 68
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG ++ R++LVN + + ++ + + + + K + R A+ LEA +GA+Y
Sbjct: 69 EGEMTSWRAALVNGEMLAKISAELKVDEYVLMSRGESSDKGRARQYLLANALEAIIGAIY 128
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G E+F ++ I N+ + DPKS Q+ + P Y++++
Sbjct: 129 LDQGYGVAEKFILENVVTKIDNVIANKLYLDPKSYFQEKSQEHFKM------TPSYRILK 182
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + +++TV VY ++ +A+ G S Q+A+ AA+ L+
Sbjct: 183 EEGPDHDKNFTVGVYIGDDLIAQGNGASKQEAQREAAQEGLK 224
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 18/146 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I + +LF + + +EG + ++RAA+V + LA ++ + +++++L + G
Sbjct: 48 GDAVLELIVTDYLFKNYSNNQEGEMTSWRAALVNGEMLAKISAELKVDEYVLMSRGESSD 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRF--K 198
++ +AN EA++GA++LD G VA D V ++ LY D + F K
Sbjct: 108 KGRARQYLLANALEAIIGAIYLDQGYGVAEKFILENVVTKIDNVIANKLYLDPKSYFQEK 167
Query: 199 QWMYYPQHP----LQEQEPDGDRQWV 220
++ P L+E+ PD D+ +
Sbjct: 168 SQEHFKMTPSYRILKEEGPDHDKNFT 193
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 32 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 91
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+EA Q
Sbjct: 92 NSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLEAAGQLV 151
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 152 HRLFDPLIEKSSSLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 204
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 205 AARVGGVSYGTGTGRSKKEAEQQAAESA 232
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 59 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGT 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G++ A Q +F ++ K + E+
Sbjct: 119 GGRDKASILADTLEAVIGAVYLDQGLEAAGQLVHRLFDPLIEKSSSLGAGLDWKTSLQEL 178
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 179 TATEGLGVPEYLVTETGPDHEKTFT 203
>gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150]
gi|419706593|ref|ZP_14234111.1| Ribonuclease 3 [Streptococcus salivarius PS4]
gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150]
gi|383283628|gb|EIC81574.1| Ribonuclease 3 [Streptococcus salivarius PS4]
Length = 229
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G F + + ++RA DL E
Sbjct: 64 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILGDLWE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K++LQ+ T+D
Sbjct: 124 AFLGALYLDQGLPAVEKFLNKVMIPKVEEGNFDR-VTDYKTELQERLQVNGTVD------ 176
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
Y VIE GP +++ +T+ V + L+ G S
Sbjct: 177 ITYTVIEESGPAHAKEFTMQVAVDGKELSTGLGKS 211
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E F+ G +
Sbjct: 50 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 110 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNKVM 146
>gi|189043365|sp|Q1JI19.1|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270]
Length = 230
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 127/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + C L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTC--LQEF 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 169 LQAKGDVVIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 42 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 101
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 102 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 161
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 162 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 214
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHE 476
A TG S ++AE AA+ A + SI D + + A +++ E
Sbjct: 215 AARVGGVSYGTGTGRSKKEAEQQAAESAWR---SIRAAADERAKATADAVDADPDE 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 69 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 129 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 188
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 189 TATEGLGVPEYLVTETGPDHEKTFT 213
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 46 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 105
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 106 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 165
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 166 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 218
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHE 476
A TG S ++AE AA+ A + SI D + + A +++ E
Sbjct: 219 AARVGGVSYGTGTGRSKKEAEQQAAESAWR---SIRAAADERAKATADAVDADPDE 271
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 73 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 132
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 133 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 192
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 193 TATEGLGVPEYLVTETGPDHEKTFT 217
>gi|365904207|ref|ZP_09441966.1| ribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 229
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYL 284
K + L+ G+ FN +++ R T S + L +G +RLEFLGD VL++ S+YL
Sbjct: 5 KFFELLKEDYGITFNDKKMVERAMTHSSYDNEHKELNIGDYERLEFLGDAVLEINISEYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
+ HFPE EG L+ LRS +V + + I + + I + + R D+
Sbjct: 65 FTHFPELPEGKLTRLRSDIVRTDSFAKFAKQIHIDKYLQIGRGEEKQGARSRHTLLEDIF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EAF GA+Y+D+G + EQF +P + +++ D K+ LQ+ GE D
Sbjct: 125 EAFNGALYLDQGNDVVEQFLTQVVYPHIASGEFSED-TDFKTHLQEKLQK-----SGEVD 178
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
I Y V++ GP + + + + + N+ L+K G S + AE AAK AL++
Sbjct: 179 ID-YHVVDEEGPDHDKKFEIELIVDNKILSKGYGYSKKHAEQMAAKRALEEL 229
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 102 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 161
S +LF FP++ EG L R+ IV+ A AK+I ++ ++ G + +
Sbjct: 61 SEYLFTHFPELPEGKLTRLRSDIVRTDSFAKFAKQIHIDKYLQIGRGEEKQGARSRHTLL 120
Query: 162 ANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ FEA GAL+LD G DV +Q + V+Y
Sbjct: 121 EDIFEAFNGALYLDQGNDVVEQFLTQVVY 149
>gi|195504983|ref|XP_002099313.1| GE10838 [Drosophila yakuba]
gi|33328865|gb|AAQ09839.1| CG13603, partial [Drosophila yakuba]
gi|194185414|gb|EDW99025.1| GE10838 [Drosophila yakuba]
Length = 233
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+L LSQIAG+VI ++LSLCI++P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVQWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G+ L +ISV+QIYR
Sbjct: 61 SNGFCNFPLITGIFLLIISVVQIYR 85
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAW SF+ VG+GV ALLKL HQ++N++VSMY ERQ L+++ + P G+
Sbjct: 167 FGAWGSFAISVGIGVIALLKLIDNHQVRNIKVSMYLERQRLVNQQQYDGRSTPPIVSNGS 226
Query: 539 SEGTSAQN 546
S+ S QN
Sbjct: 227 SD--SEQN 232
>gi|406933452|gb|EKD68103.1| hypothetical protein ACD_48C00077G0008 [uncultured bacterium]
Length = 228
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 11/229 (4%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
L+ + GV F LL F RS + SN+RLEFLGD +L +TS +LY +P
Sbjct: 6 LQSTIGVTFQDKELLQHAFYHRSYLNEAKHIKESNERLEFLGDAILSFLTSQFLYTTYPT 65
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGA 346
+ EG L+ +RSSLV ++ +G + + + + ++ AD EAFLGA
Sbjct: 66 YPEGVLTNIRSSLVKTKSLGESAKALGFGDLLFLSHGEEESGGRNNMSLLADSFEAFLGA 125
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+++D+G++ +QF FP+ + + + D KS LQ+ L P Y+V
Sbjct: 126 IFLDQGIDCAKQFLTSYLFPKTMGIVETKSYLDFKSLLQEIIQEDTKLS------PTYQV 179
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+ GP ++R + + + +++L + G S Q+ E AA+ AL+K I
Sbjct: 180 AKSEGPDHNRLFYIEAFIGDKKLGEGKGKSKQEGEQAAAQNALEKMGKI 228
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+TS L+ +P EG L R+++V+ + L AK +G D + +HG +
Sbjct: 47 GDAILSFLTSQFLYTTYPTYPEGVLTNIRSSLVKTKSLGESAKALGFGDLLFLSHGEEES 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GA+FLD GID A Q +S L+
Sbjct: 107 GGRNNMSLLADSFEAFLGAIFLDQGIDCAKQFLTSYLF 144
>gi|406659375|ref|ZP_11067513.1| ribonuclease III [Streptococcus iniae 9117]
gi|405577484|gb|EKB51632.1| ribonuclease III [Streptococcus iniae 9117]
Length = 230
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 126/240 (52%), Gaps = 24/240 (10%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE S + F++ LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEALLEASFQIRFSNKSLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG LS LRS +V R +S+ F I K + K R
Sbjct: 59 SEYLFAKYPKKAEGDLSKLRSMIV--REESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++ +F P+++ + D K+ LQ+
Sbjct: 117 ILGDLFEAFLGALLLDKGVDEVRRFLNQVMIPQVEQGKF-ERVKDYKTSLQEIL------ 169
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ DI I Y+V++ GP +++ + VAVY NE +++ G S + AE +AAK AL +
Sbjct: 170 -QAQGDILIDYQVVKESGPAHAKEFEVAVYANNEFISQGLGKSKKLAEQDAAKNALSQLS 228
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L+ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKAEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE----VRFKQWMYYPQHPL 208
+ + FEA +GAL LD G+D + + V+ E R K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVDEVRRFLNQVMIPQVEQGKFERVKDYKTSLQEIL 169
Query: 209 QEQ 211
Q Q
Sbjct: 170 QAQ 172
>gi|406997819|gb|EKE15836.1| hypothetical protein ACD_11C00103G0038 [uncultured bacterium]
Length = 227
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
GV F I LL + T RS N L N+RLEFLGD VL+L ++YLY F + EG
Sbjct: 10 GVKFKEISLLQQAVTHRSYLNENRGYKLDHNERLEFLGDAVLELAVTEYLYGKFS-NPEG 68
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA------DLLEAFLGAMY 348
L+ R+SLVN + + ++G+ F ++ K + K RA + +EA +GA+Y
Sbjct: 69 ELTSWRASLVNGEMLASIAKELGVEEF--LLMSKGEAKDTGRARQYLLANSIEAIIGAIY 126
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G E ++F +L + ++ + D KS Q+ E P Y+VI+
Sbjct: 127 LDQGYEEAKKFILDNVVIKLDDILKSKSYLDSKSYFQEKSQE------KEKTTPSYRVIK 180
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + R + V VY + +A+ G S Q+A+ AAK L+
Sbjct: 181 EWGPDHDRHFVVGVYLAEKLVAEGEGASKQEAQREAAKKGLE 222
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 19/146 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L+ F + EG L ++RA++V + LA +AK +G+E+F+L + G
Sbjct: 47 GDAVLELAVTEYLYGKFSN-PEGELTSWRASLVNGEMLASIAKELGVEEFLLMSKGEAKD 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYK-DNEVRFKQWM---YYPQHP 207
++ +AN EA++GA++LD G + A + + +V+ K D+ ++ K ++ Y Q
Sbjct: 106 TGRARQYLLANSIEAIIGAIYLDQGYEEAKKFILDNVVIKLDDILKSKSYLDSKSYFQEK 165
Query: 208 LQEQE-------------PDGDRQWV 220
QE+E PD DR +V
Sbjct: 166 SQEKEKTTPSYRVIKEWGPDHDRHFV 191
>gi|381183950|ref|ZP_09892635.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380316161|gb|EIA19595.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 230
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 126/239 (52%), Gaps = 25/239 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ + + L+ S G F +I LL FT S Y N L N+RLEFLGD VL+L S
Sbjct: 1 MNEWEELQESVGFDFKNIELLQNAFTHSS--YVNEHRHENLKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN-PKVDLKMKDR---- 336
DYL+N +P+ EG ++ +R+++V + + M F+ I K + K R
Sbjct: 59 DYLFNKYPDMAEGQMTKMRAAIV---CEPSLVEFAEMVHFSKYIRLGKGEEKAGGRTRPA 115
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ E+F+GA+Y+D G++A +F + FP++ I Q D K++LQ+ R
Sbjct: 116 LLADVFESFIGALYLDNGIQAVIRFLERLVFPKIDTGIYMQTV-DFKTQLQEIVQRDR-- 172
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
D+ I Y ++ GP +++++ V + L K TG + +QAE NAA+ A+++
Sbjct: 173 -----DVLIQYDILGETGPAHNKAFEAQVVVNGQVLGKGTGRTKKQAEQNAAEYAIRQV 226
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGQMTKMRAAIVCEPSLVEFAEMVHFSKYIRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 205
+A+ FE+ +GAL+LD GI +RF + + +P+
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGIQAV-------------IRFLERLVFPK 148
>gi|392950932|ref|ZP_10316487.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
gi|391859894|gb|EIT70422.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
Length = 228
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 16/230 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
K + L+ + G F + LL R T RS N N+RLEFLGD ++ + +YL+
Sbjct: 4 KTYKPLQKALGYEFQDLALLDRAITHRSHAAAN-----NERLEFLGDALINFVIGEYLFR 58
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
P EG LS LR+SLV + +V+ ++ + + ++ R AD EA
Sbjct: 59 MRPTAEEGALSRLRASLVREPSLAVLARELKLGDAIKLGEGELKSGGWRRDSVLADTFEA 118
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
LGA+Y+D G E ++ C CF LQ + DPK++LQ+ L +P
Sbjct: 119 VLGAIYLDGGFEVAKEVCLRCFDKLLQQLPDPETLKDPKTRLQEW------LQARARPLP 172
Query: 403 IYKVIEHVGPTNSRSYTV-AVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
IY+V+ GP + R + V A E A+A NS + AE AA++ LQ+
Sbjct: 173 IYEVLSEAGPPHRRQFVVRARLLDMEHTAEAFSNSRRSAEQKAAELLLQR 222
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ +LF + P EEG L+ RA++V+ LA LA+ + L D + G
Sbjct: 44 GDALINFVIGEYLFRMRPTAEEGALSRLRASLVREPSLAVLARELKLGDAIKLGEGELKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL--------YKDNEVRFKQW 200
+A+ FEA++GA++LDGG +VA +V F +L KD + R ++W
Sbjct: 104 GGWRRDSVLADTFEAVLGAIYLDGGFEVAKEVCLRCFDKLLQQLPDPETLKDPKTRLQEW 163
Query: 201 MYYPQHP------LQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIR 244
+ P L E P RQ+V ++ LL +E+++ N R
Sbjct: 164 LQARARPLPIYEVLSEAGPPHRRQFVVRARLLD----MEHTAEAFSNSRR 209
>gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|386338195|ref|YP_006034364.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|334280831|dbj|BAK28405.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 228
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
L+ G++F LL FT S Y N L + N+RLEFLGD VLQL+ S YL+
Sbjct: 8 LQRDFGIVFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLFKK 65
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+P+ EG LS +RS +V + + G F + N + ++R DL EAF
Sbjct: 66 YPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILGDLFEAF 125
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+ +D+G+EA +F P+++ + D K+ LQ+ G D+ I
Sbjct: 126 LGALLMDQGVEAVNKFLNQVMIPQVEKGNF-ERVKDYKTTLQELLQ-------GHGDVTI 177
Query: 404 -YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+V GP +++ + V VY +E ++ G S + AE +AAK AL
Sbjct: 178 DYRVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNAL 224
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G ++F+ +G +
Sbjct: 50 GDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL +D G++ ++ + V+ K N R K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|357638281|ref|ZP_09136154.1| ribonuclease III [Streptococcus urinalis 2285-97]
gi|418418215|ref|ZP_12991406.1| ribonuclease 3 [Streptococcus urinalis FB127-CNA-2]
gi|357586735|gb|EHJ56143.1| ribonuclease III [Streptococcus urinalis 2285-97]
gi|410869314|gb|EKS17277.1| ribonuclease 3 [Streptococcus urinalis FB127-CNA-2]
Length = 228
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 19/221 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F + LL FT S Y N L + N+RLEFLGD VLQLI S+YL++ +PE E
Sbjct: 14 ITFENQELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLIISEYLFSRYPEKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYI 349
G +S LRS +V + + + + + +DRA DL EAFLGA+ +
Sbjct: 72 GDMSKLRSMIVREESLAGFSKFCHFDRYIKLGKGEEKSGGRDRATILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+E QF P+++ K K + CL G DI I Y+VI+
Sbjct: 132 DKGVETVRQFLNKVMIPQVEKGTF------EKVKDYKTCLQEHLQAHG--DILIDYQVID 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP +++ + VA++ ++++++ G S + AE +AAK AL
Sbjct: 184 ENGPAHAKEFNVAIFVNDKQISQGKGRSKKLAEQDAAKNAL 224
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P+ EG ++ R+ IV+ + LA +K + ++ G +
Sbjct: 50 GDAVLQLIISEYLFSRYPEKAEGDMSKLRSMIVREESLAGFSKFCHFDRYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + + FEA +GAL LD G++ Q + V+
Sbjct: 110 GGRDRATILGDLFEAFLGALLLDKGVETVRQFLNKVM 146
>gi|383936592|ref|ZP_09990016.1| ribonuclease III [Rheinheimera nanhaiensis E407-8]
gi|383702374|dbj|GAB60107.1| ribonuclease III [Rheinheimera nanhaiensis E407-8]
Length = 224
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 23/233 (9%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
+PL+ +L Y F+ LL + T RS + N+RLEFLGD VL L+ ++
Sbjct: 6 TPLMARLGYQ-------FSDTSLLEQALTHRSCKGQH-----NERLEFLGDAVLSLVIAE 53
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
LY+HFP+ EG L+ +R++LV T + + ++ + + + ++ R AD
Sbjct: 54 TLYSHFPKAREGDLTRMRATLVKGVTLAEIAQELRLSEYLRLGPGELKSGGFRRESILAD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA LGA+Y+D GM AC+ + F RL I E D K++LQ+ LR
Sbjct: 114 AVEAILGAIYLDSGMAACKARILLWFGSRLDT-ITPGEQKDSKTRLQEYLQGLRLA---- 168
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+P+Y VI VG + +++TV ATG+S ++AE +AA +AL++
Sbjct: 169 --LPVYDVIATVGEAHQQTFTVRCSIAGMAPITATGSSRRKAEQDAAHMALEQ 219
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ FP EG L RA +V+ LA +A+ + L +++ G
Sbjct: 43 GDAVLSLVIAETLYSHFPKAREGDLTRMRATLVKGVTLAEIAQELRLSEYLRLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL-------YKDNEVRFKQWM 201
+ +A+ EA++GA++LD G+ F S L KD++ R ++++
Sbjct: 103 GGFRRESILADAVEAILGAIYLDSGMAACKARILLWFGSRLDTITPGEQKDSKTRLQEYL 162
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length = 240
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 17/211 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
+L R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 25 ILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLSEGQLAKLRAAVV 84
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N R + V ++G+ + + + +D+ AD LEA +GA+Y+D+G++ +
Sbjct: 85 NMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGAVYLDRGLDEASELV 144
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ LT L G +P Y V+E GP + ++
Sbjct: 145 HRLFDPLIARASGLGAGLDW---KTSLQE--LTAAELLG----VPEY-VVEESGPDHQKT 194
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ V + G S ++AE AA+ A
Sbjct: 195 FRATVRVAGQTYGSGEGRSKKEAEQQAAESA 225
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 68 TIFVGVVLFVISVIQIYRMYMYIHKG---NNFSQF--------ITSIHLFHVFPDIEEGG 116
T+ V + +++ +R Y Y + G N +F + + L+ PD+ EG
Sbjct: 16 TVGVEIAPDILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLSEGQ 75
Query: 117 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 176
LA RAA+V + LA +A+ +G+ ++ G + + +A+ EAL+GA++LD
Sbjct: 76 LAKLRAAVVNMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGAVYLDR 135
Query: 177 GIDVADQ----VFSSVLYKDN-------------EVRFKQWMYYPQHPLQEQEPD 214
G+D A + +F ++ + + E+ + + P++ ++E PD
Sbjct: 136 GLDEASELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPD 190
>gi|334880638|emb|CCB81401.1| ribonuclease 3 [Lactobacillus pentosus MP-10]
Length = 231
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 15/219 (6%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G++FN LLA FT S + + L +R+EFLGD VL+L+ S+YLY + + +G
Sbjct: 14 GIVFNDPALLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYKDMPQG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ LR+++V + + + P + + + + +R D+ E+F+GA+Y+D
Sbjct: 74 KLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKARAWERDSLLCDIFESFVGALYLD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEH 409
+G E +F FP+L + + D K+ LQ+ DG D+ I Y++IE
Sbjct: 134 QGREPVLKFVHQVIFPKLDEGRFDGVF-DYKTTLQEYL----QRDG---DVAIEYQLIEQ 185
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP N RSY VAV +++ + G+S ++AE +AA+ A
Sbjct: 186 EGPANERSYEVAVVADGQKIGEGRGHSKKEAEQSAARQA 224
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ + D+ +G L RAA+V + A A+ ++ G
Sbjct: 51 GDAVLELVVSEYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
E + + FE+ +GAL+LD G + + V++ K +E RF Y +
Sbjct: 111 RAWERDSLLCDIFESFVGALYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYL 170
Query: 212 EPDGD 216
+ DGD
Sbjct: 171 QRDGD 175
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LYN P+ EG L+ LR+++V
Sbjct: 31 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYNTHPDLPEGQLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 91 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLKAASELV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 151 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 204 AARVGGVSYGTGTGRSKKEAEQQAAESA 231
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L++ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 58 GDSVLGLVVTDTLYNTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+ A + +F ++ K + E+
Sbjct: 118 GGRDKASILADTLEAVIGAVYLDQGLKAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 177
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 178 TATEGLGVPEYLVTETGPDHEKTFT 202
>gi|377831259|ref|ZP_09814240.1| ribonuclease III [Lactobacillus mucosae LM1]
gi|377554937|gb|EHT16635.1| ribonuclease III [Lactobacillus mucosae LM1]
Length = 248
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 14/234 (5%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITS 281
L+K+L+ YL G+ FN+ LLA FT S + + L +R+EFLGD VLQL S
Sbjct: 17 LIKELEDYLAKEFGIHFNNPDLLAEAFTQASYVNEHPHQGLKYYERIEFLGDAVLQLFVS 76
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA---- 337
+Y+Y FPE +G L+ LR+++V + S + + + + + + RA
Sbjct: 77 EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRASLLC 136
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ EAF+GA+Y+D+G +A E+F FP+L + D K+ LQ+ G
Sbjct: 137 DIFEAFIGALYLDQGRDAVEKFIHRVIFPKLDMGWFDHAV-DAKTSLQEFLQR-----NG 190
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ DI Y ++ G N + V+V E +A+ G+S + AEM AA+ AL +
Sbjct: 191 DVDIE-YHLLSEAGTENDPQFKVSVSVNGEPIAQGIGSSKKHAEMQAAQAALNQ 243
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ FP++ +G L RAA+V + AK + ++ HG ++
Sbjct: 67 GDAVLQLFVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMA 126
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FEA +GAL+LD G D ++ V++
Sbjct: 127 GARQRASLLCDIFEAFIGALYLDQGRDAVEKFIHRVIF 164
>gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812]
gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812]
Length = 228
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
L+ G+ F LL FT S Y N L + N+RLEFLGD VLQL+ S YL+
Sbjct: 8 LQRDFGITFKDTTLLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLFKK 65
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+P+ EG LS +RS +V + + G F + N + ++R DL EAF
Sbjct: 66 YPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKSGGRNRDTILGDLFEAF 125
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+ +D+G+EA +F P+++ + D K+ LQ+ G D+ I
Sbjct: 126 LGALLMDQGVEAVNKFLNQVMIPQVEKGNF-ERVKDYKTTLQELLQ-------GHGDVTI 177
Query: 404 -YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+V GP +++ + V VY +E ++ G S + AE +AAK AL
Sbjct: 178 DYRVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNAL 224
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G +DF+ +G +
Sbjct: 50 GDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL +D G++ ++ + V+ K N R K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 37 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 96
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+EA +
Sbjct: 97 NSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLEAAGELV 156
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 157 HRLFDPLIEKSSSLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 209
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 210 AARVGGVSYGTGTGRSKKEAEQQAAESA 237
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 64 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G++ A + +F ++ K + E+
Sbjct: 124 GGRDKASILADTLEAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQEL 183
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 184 TATEGLGVPEYLVTETGPDHEKTFT 208
>gi|392948722|ref|ZP_10314325.1| Ribonuclease III [Lactobacillus pentosus KCA1]
gi|392435999|gb|EIW13920.1| Ribonuclease III [Lactobacillus pentosus KCA1]
Length = 229
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 15/219 (6%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G++FN LLA FT S + + L +R+EFLGD VL+L+ S+YLY + + +G
Sbjct: 14 GIVFNDPALLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYKDMPQG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ LR+++V + + + P + + + + +R D+ E+F+GA+Y+D
Sbjct: 74 KLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKARAWERDSLLCDIFESFVGALYLD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEH 409
+G E +F FP+L + + D K+ LQ+ DG D+ I Y++IE
Sbjct: 134 QGREPVLKFVHQVIFPKLDEGRFDGVF-DYKTTLQEYL----QRDG---DVAIEYQLIEQ 185
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP N RSY VAV +++ + G+S ++AE +AA+ A
Sbjct: 186 EGPANERSYEVAVVADGQKIGEGRGHSKKEAEQSAARQA 224
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ + D+ +G L RAA+V + A A+ ++ G
Sbjct: 51 GDAVLELVVSEYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
E + + FE+ +GAL+LD G + + V++ K +E RF Y +
Sbjct: 111 RAWERDSLLCDIFESFVGALYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYL 170
Query: 212 EPDGD 216
+ DGD
Sbjct: 171 QRDGD 175
>gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 232
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLI 279
++ QLQ YL + G+ FN+ LLA FT S Y N N +R+EFLGD VLQL
Sbjct: 1 MITQLQDYLAKTYGIHFNNPALLAEAFTQAS--YVNEHPHENLKYYERIEFLGDAVLQLF 58
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA-- 337
S+Y+Y +PE +G L+ LR+++V + S + + + + ++RA
Sbjct: 59 VSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASL 118
Query: 338 --DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
D+ E+F+GA+Y+D+G +A EQF + FP+L + D K+ LQ+
Sbjct: 119 LCDIFESFIGALYLDQGRQAVEQFIQTVIFPKLDLGWFDHAV-DAKTSLQEFLQR----- 172
Query: 396 GGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ G N + V V +++A G+S + AEM+AAK AL+K
Sbjct: 173 --NGDVAIEYDLLSEGGTENDPVFEVEVTVDGKKVATGQGSSKKHAEMDAAKHALEK 227
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P++ +G L RAA+V + AK + ++ G ++
Sbjct: 51 GDAVLQLFVSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FE+ +GAL+LD G +Q +V++
Sbjct: 111 GARNRASLLCDIFESFIGALYLDQGRQAVEQFIQTVIF 148
>gi|195573311|ref|XP_002104637.1| GD18331 [Drosophila simulans]
gi|194200564|gb|EDX14140.1| GD18331 [Drosophila simulans]
Length = 216
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 66/85 (77%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+L LSQIAG+VI ++LSLCI++P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVQWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G L +ISV+QIYR
Sbjct: 61 SNGFCNFPLITGFFLLIISVVQIYR 85
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAW SF+ VG+GV ALLKL HQ++N++VSMY ERQ L+++ + P +
Sbjct: 150 FGAWGSFAISVGIGVIALLKLIDNHQVRNIKVSMYLERQRLVNQQQYDGRSTPPIVSNAS 209
Query: 539 SEGTSAQN 546
S+ S QN
Sbjct: 210 SD--SEQN 215
>gi|374854311|dbj|BAL57196.1| ribonuclease III [uncultured prokaryote]
Length = 239
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 107/225 (47%), Gaps = 22/225 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNL---TLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
G+ F LL R T RS Y N N+RLEFLGD VL I +++Y+H+PE E
Sbjct: 18 GLTFRDWSLLLRALTHRS--YCNEHPEVTEDNERLEFLGDAVLDFIVGEWVYHHYPELRE 75
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMYI 349
G L+ LRS+LV N + I + + + + R LL EA +GA+Y+
Sbjct: 76 GELTRLRSALVRNEQLASFARQIDLGAALRLGAGEAASGARQRTSLLGSAFEALIGALYL 135
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
D G+E +F + P L+ + EW DPKS+LQ+ R P Y
Sbjct: 136 DAGLETASRFVR----PFLEKTVAALEWTHLLDPKSRLQEWAQAQRL------GTPRYVT 185
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
I GP ++ + V VY + + G + Q A + AA+ ALQK
Sbjct: 186 IAAHGPEHAPLFEVEVYIGDRAYGRGAGPNKQIAALKAAQDALQK 230
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI ++H +P++ EG L R+A+V+N+ LA A++I L + G
Sbjct: 54 GDAVLDFIVGEWVYHHYPELREGELTRLRSALVRNEQLASFARQIDLGAALRLGAGEAAS 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYY--PQHPLQE 210
+ + + FEAL+GAL+LD G++ A + L K V +W + P+ LQE
Sbjct: 114 GARQRTSLLGSAFEALIGALYLDAGLETASRFVRPFLEKT--VAALEWTHLLDPKSRLQE 171
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 32 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 91
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+EA +
Sbjct: 92 NSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLEAAGELV 151
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 152 HRLFDPLIEKSSSLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 204
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 205 AARVGGVSYGTGTGRSKKEAEQQAAESA 232
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 59 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGT 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G++ A + +F ++ K + E+
Sbjct: 119 GGRDKASILADTLEAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQEL 178
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 179 TATEGLGVPEYLVTETGPDHEKTFT 203
>gi|410594287|ref|YP_006951014.1| ribonuclease 3 [Streptococcus agalactiae SA20-06]
gi|410517926|gb|AFV72070.1| Ribonuclease 3 [Streptococcus agalactiae SA20-06]
Length = 228
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 117/234 (50%), Gaps = 20/234 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F + LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S YL+ +P+ EG LS LRS +V ++ + G + + + ++R
Sbjct: 59 SQYLFTKYPQKAEGDLSKLRSMIVREKSLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E F P ++ + D K+ LQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTY-ERVKDYKTSLQELLQS------ 171
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
D+ I Y+V GP +++ + V V E L++ G S + AE +AAK AL
Sbjct: 172 -HGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G + ++ G +
Sbjct: 50 GDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREKSLAGFSRLCGFDHYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++V + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 146
>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|408401236|ref|YP_006859199.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410494313|ref|YP_006904159.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|417752716|ref|ZP_12400893.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|417928266|ref|ZP_12571654.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|333771523|gb|EGL48458.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|340766140|gb|EGR88666.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|407967464|dbj|BAM60702.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410439473|emb|CCI62101.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 230
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 126/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L +S + F LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEELLAASFDICFEDHTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++ +F + P++ ++ N K K + C L+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGVDEVRRFLQQVMIPQV------EKGNFEKVKDYKTC--LQEL 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ DI I Y+VI GP +++ + VAV+ E L+K G S + AE +AAK AL +
Sbjct: 169 LQSKGDIAIDYQVISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD G+D + V+ K N + K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVDEVRRFLQQVMIPQVEKGNFEKVKDYKTCLQELL 169
Query: 209 QEQ 211
Q +
Sbjct: 170 QSK 172
>gi|195331470|ref|XP_002032424.1| GM23522 [Drosophila sechellia]
gi|194121367|gb|EDW43410.1| GM23522 [Drosophila sechellia]
Length = 233
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 66/85 (77%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+L LSQIAG+VI ++LSLCI++P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVQWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G L +ISV+QIYR
Sbjct: 61 SNGFCNFPLITGFFLLIISVVQIYR 85
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAW SF+ VG+GV ALLKL HQ++N++VSMY ERQ L+++ + P +
Sbjct: 167 FGAWGSFAISVGIGVIALLKLIDNHQVRNIKVSMYLERQRLVNQQQYDGRSTPPIVSNAS 226
Query: 539 SEGTSAQN 546
S+ S QN
Sbjct: 227 SD--SEQN 232
>gi|21355077|ref|NP_651200.1| CG13603 [Drosophila melanogaster]
gi|7301080|gb|AAF56215.1| CG13603 [Drosophila melanogaster]
gi|20151961|gb|AAM11340.1| GH22341p [Drosophila melanogaster]
gi|220944766|gb|ACL84926.1| CG13603-PA [synthetic construct]
gi|220954552|gb|ACL89819.1| CG13603-PA [synthetic construct]
Length = 233
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 66/85 (77%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+L LSQIAG+VI ++LSLCI++P+ ++ D+F GHCLLF+TG W+E DG F V WA
Sbjct: 1 MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWREEDGMFDVQWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +CN+ + G L +ISV+QIYR
Sbjct: 61 SNGFCNFPLITGFFLLIISVVQIYR 85
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAW SF+ VG+ V ALLKL HQ++N++VSMY ERQ L+++ + P V
Sbjct: 167 FGAWGSFAISVGIAVIALLKLIDNHQVRNIKVSMYLERQRLVNQQ-QYDGRSTPPIVSNA 225
Query: 539 SEGT 542
S T
Sbjct: 226 SSDT 229
>gi|392428570|ref|YP_006469581.1| ribonuclease III [Streptococcus intermedius JTH08]
gi|419775910|ref|ZP_14301835.1| ribonuclease III [Streptococcus intermedius SK54]
gi|423070522|ref|ZP_17059298.1| ribonuclease 3 [Streptococcus intermedius F0413]
gi|424787591|ref|ZP_18214355.1| ribonuclease III [Streptococcus intermedius BA1]
gi|355365608|gb|EHG13330.1| ribonuclease 3 [Streptococcus intermedius F0413]
gi|383846458|gb|EID83855.1| ribonuclease III [Streptococcus intermedius SK54]
gi|391757716|dbj|BAM23333.1| ribonuclease III [Streptococcus intermedius JTH08]
gi|422113345|gb|EKU17083.1| ribonuclease III [Streptococcus intermedius BA1]
Length = 232
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+
Sbjct: 13 GIAFQDEQLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS LRS++V + + D F + + ++R DL EAFLGA+
Sbjct: 71 EGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DK +EA F P+++ Q D K+KLQ+ G+ +I +Y+V+
Sbjct: 131 LDKDVEAVRTFLYQIMIPKVEAGDFEQVI-DYKTKLQELLQV-----NGDVEI-LYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++ + V+V + G S + AE AAK A +K C
Sbjct: 184 ETGPAHAKEFAVSVSVDGRVVGDGKGRSKKLAEQEAAKNAYEKENHSC 231
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ + FEA +GAL LD ++
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKDVEA 137
>gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30]
gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10]
gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20]
gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|420261504|ref|ZP_14764148.1| ribonuclease III [Enterococcus sp. C1]
gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30]
gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10]
gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20]
gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|394771438|gb|EJF51199.1| ribonuclease III [Enterococcus sp. C1]
Length = 230
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 111/210 (52%), Gaps = 13/210 (6%)
Query: 238 VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
++F+ + LL + FT S + NL L N+RLEFLGD VL+LI S YLY P+ EG
Sbjct: 15 IVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVSRYLYRELPDLPEGK 74
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDK 351
L+ LR+++V + S+ D + + + + + R DL EAFLGA+Y+D+
Sbjct: 75 LTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENSGGRKRPSLLCDLFEAFLGALYLDQ 134
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G+E+ F FP+++ + E D K++LQ+ GG+ I Y++I+ G
Sbjct: 135 GLESVSGFLTKVVFPKVKAGAFSHEM-DHKTRLQEVLQR-----GGDVSIN-YRLIKEAG 187
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
P + R + VY + + K G S + +E
Sbjct: 188 PAHERIFWTEVYCDDTLIGKGQGKSKKLSE 217
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ PD+ EG L RAAIV+ L+ AK ++++ G +
Sbjct: 51 GDAVLELIVSRYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FEA +GAL+LD G++ + V++
Sbjct: 111 GGRKRPSLLCDLFEAFLGALYLDQGLESVSGFLTKVVF 148
>gi|424780882|ref|ZP_18207749.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422842583|gb|EKU27034.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 231
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 17/222 (7%)
Query: 238 VIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
+ F + RLL FT S + L N+RLE+LGD VL+L+ S YL+ +PE EG
Sbjct: 14 IQFKNERLLKEAFTHSSYANEHREEQLPCNERLEYLGDAVLELLVSTYLFKEYPELPEGK 73
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA------DLLEAFLGAMYI 349
L+ R+++V + + ++ F +I K + K R DL EAFLGA+Y+
Sbjct: 74 LTRFRAAIVKEDSLAYFAKEV--HFDEHIFLGKGEEKANGRQRPALLCDLFEAFLGALYL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D+G+E + F FP+++ D K+KLQ+ GE I Y+++
Sbjct: 132 DQGLEKVQAFLDQVMFPKVKSGTFTSAV-DYKTKLQELLQK-----QGEVKIQ-YQLVAE 184
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP ++RS+ +AVY L+ TG S +QAE AA+ A+Q+
Sbjct: 185 EGPAHNRSFKMAVYCDGNLLSVGTGRSKKQAEQIAAQKAIQE 226
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +LF +P++ EG L +RAAIV+ LA+ AK + ++ + G +
Sbjct: 50 GDAVLELLVSTYLFKEYPELPEGKLTRFRAAIVKEDSLAYFAKEVHFDEHIFLGKGEEKA 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + + FEA +GAL+LD G++ V++
Sbjct: 110 NGRQRPALLCDLFEAFLGALYLDQGLEKVQAFLDQVMF 147
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 19/232 (8%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLY 285
+ L+ S G F ++ LL FT S Y N L N+RLEFLGD VL+L SDYL+
Sbjct: 5 EELQESVGFTFENVGLLQEAFTHSS--YVNEHRKEKLNDNERLEFLGDAVLELTVSDYLF 62
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+P EG L+ +R+++V + +I + + N + + R AD+ E
Sbjct: 63 QKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLADVFE 122
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
+F+GA+Y+D G++ +F + FP++ E D K++LQ+ R D+
Sbjct: 123 SFIGALYLDNGLKNVIRFLERVIFPKIDTGAF-LETVDHKTQLQEIVQRDR-------DV 174
Query: 402 PI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
I Y ++E GP +S+++ V + L + G + +QAE NAAK A+ K
Sbjct: 175 LIQYDILEESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKEAINKL 226
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RAAIV L A+ I ++ +G +
Sbjct: 49 GDAVLELTVSDYLFQKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQ 205
+A+ FE+ +GAL+LD G+ N +RF + + +P+
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGL-------------KNVIRFLERVIFPK 148
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 21/229 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F + +LL + FT S Y N N+RLEFLGD VL+L S YL+ FP+
Sbjct: 11 GIFFRNEKLLMQAFTHSS--YVNEHRKRLHEDNERLEFLGDAVLELTVSQYLFEQFPQMS 68
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG L+ LR+++V S+V + F ++ K + R AD+ EAF+GA
Sbjct: 69 EGELTKLRAAIVCE--PSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVFEAFIGA 126
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D+GMEA QF + FP+++ + D KS+LQ+ DG + YK+
Sbjct: 127 LYLDQGMEAVVQFLEKTIFPKIREGAFSH-VMDYKSQLQEFV----QRDG--SGVLEYKI 179
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
++ GP +++ + V E L G S ++AE AA++AL K +
Sbjct: 180 LQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKLKQL 228
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + D +L G +L
Sbjct: 48 GDAVLELTVSQYLFEQFPQMSEGELTKLRAAIVCEPSLVTFAHALSFGDLVLLGKGEELT 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G++ Q ++ K E F M Y LQE
Sbjct: 108 GGRMRPSLLADVFEAFIGALYLDQGMEAVVQFLEKTIFPKIREGAFSHVMDYKSQ-LQE 165
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 14/234 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
K L L+ G F + LL T RS S +RLEFLGD +L+++ S YL+
Sbjct: 4 KNLDPLQDLIGYHFKNESLLETALTHRSCLNQPGVSESYERLEFLGDAILEMLISIYLFE 63
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVC-----ND-IGMPFFANIINPKVDLKMKDRADLL 340
+P+ EG+L+ RS+ V + S V ND I M + + +L + + D++
Sbjct: 64 KYPDKMEGYLTAARSATVRTESLSEVSVHNRFNDYIRMSKGEEVTGGRQNLSILE--DVI 121
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
E+ +GA+YID G++A + F + P Q I DPKS LQ+ + G+
Sbjct: 122 ESLIGALYIDGGLDAAKNFFESFILPNAQGIIALNRLKDPKSLLQE-----KVQSAGQSS 176
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
PIY+ I G +++++ VAV + ++LA TG + Q+AE AA+ AL P+
Sbjct: 177 -PIYQTIGESGLDHNKTFEVAVSIEGKQLASGTGKNKQEAEQKAAQKALDALPA 229
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + SI+LF +PD EG L R+A V+ + L+ ++ D++ + G ++
Sbjct: 49 GDAILEMLISIYLFEKYPDKMEGYLTAARSATVRTESLSEVSVHNRFNDYIRMSKGEEVT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + + E+L+GAL++DGG+D A F S +
Sbjct: 109 GGRQNLSILEDVIESLIGALYIDGGLDAAKNFFESFI 145
>gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|385812507|ref|YP_005848898.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
fermentum CECT 5716]
gi|238692982|sp|B2GD42.1|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
fermentum CECT 5716]
Length = 232
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLI 279
++ QLQ YL + G+ FN+ LLA FT S Y N N +R+EFLGD VLQL
Sbjct: 1 MITQLQDYLAKTYGIHFNNPALLAEAFTQAS--YVNEHPHENLKYYERIEFLGDAVLQLF 58
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA-- 337
S+Y+Y +PE +G L+ LR+++V + S + + + + ++RA
Sbjct: 59 VSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASL 118
Query: 338 --DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
D+ E+F+GA+Y+D+G +A EQF + FP+L + D K+ LQ+
Sbjct: 119 LCDIFESFIGALYLDQGRQAVEQFIQTVIFPKLDLGWFDHAV-DAKTSLQEFLQR----- 172
Query: 396 GGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ G N + V V +++A G+S + AEM AAK AL+K
Sbjct: 173 --NGDVAIEYDLLSEGGTENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEK 227
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P++ +G L RAA+V + AK + ++ G ++
Sbjct: 51 GDAVLQLFVSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FE+ +GAL+LD G +Q +V++
Sbjct: 111 GARNRASLLCDIFESFIGALYLDQGRQAVEQFIQTVIF 148
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 221 EQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLGDTVL 276
+Q P +K Q+ E +G+ F + +LL + FT S Y N N+RLEFLGD VL
Sbjct: 3 KQRPYVKFKQFQE-QTGIFFRNEKLLIQAFTHSS--YVNEHRKRLHEDNERLEFLGDAVL 59
Query: 277 QLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR 336
+L S YL+ FP+ EG L+ +R+++V S+V + F ++ K + R
Sbjct: 60 ELTVSQYLFEQFPQMSEGELTKMRAAIVCE--PSLVTFAHALSFGDLVLLGKGEELTGGR 117
Query: 337 ------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
AD+ EAF+GA+Y+D+G+EA QF FP+++ + D KS+LQ+
Sbjct: 118 MRPSLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSH-VMDYKSQLQEFV-- 174
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
DG + YK+++ GP +++ + V E L G S ++AE AA++AL
Sbjct: 175 --QRDG--SGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALA 230
Query: 451 KCPSI 455
K +
Sbjct: 231 KLKQL 235
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + D +L G +L
Sbjct: 55 GDAVLELTVSQYLFEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELT 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD GI+ Q ++ K E F M Y LQE
Sbjct: 115 GGRMRPSLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQ-LQE 172
>gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum]
Length = 1106
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 127/272 (46%), Gaps = 28/272 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ +F T+ +L+ +P + EG L + R+ I N +L +R + D + + D+
Sbjct: 743 GDSVLKFCTTYYLYFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRFTVTEDM- 801
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
K A+ EA+ GALF++ G+ A Q +++D E F Q+ Y + E
Sbjct: 802 -----KKPKADVMEAIFGALFIERGVKEAYQFIVQNIFQDPE--FSQFPEYLCSCISELP 854
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P QS L L+ I + +SM + L S +RLEFLG
Sbjct: 855 PSR-----RQSKFLFDLR------------INIKKTCLFQQSMTCSG-DLDSYERLEFLG 896
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
D L L+ S +LY+ FP+ EG LS R+ LV N + + I + I +P +
Sbjct: 897 DAFLDLVISKHLYDQFPDKQEGFLSTARAGLVKNEALAQISQKINLSL--AISDPHIHFT 954
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCF 364
+K DLLEAF+G + +D GME + F F
Sbjct: 955 VKRLGDLLEAFIGCLLLDCGMEKTKYFIHTQF 986
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 263 GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA 322
G NQRLEFLGD+VL+ T+ YLY +P+ EG L+ RS + +N C +
Sbjct: 734 GDNQRLEFLGDSVLKFCTTYYLYFKYPQLREGQLTSKRSEITSNSYLLSKCERWNV---V 790
Query: 323 NIINPKVDLKMKD-RADLLEAFLGAMYIDKGMEACEQF 359
+++ V MK +AD++EA GA++I++G++ QF
Sbjct: 791 DLLRFTVTEDMKKPKADVMEAIFGALFIERGVKEAYQF 828
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY PE EG L+ LR+++V
Sbjct: 43 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRLHPEVAEGTLAKLRAAVV 102
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD +EA +GA Y+D+G++A +F
Sbjct: 103 NSRALAEVGRGLDLGAFIRLGKGEEGTGGRDKSSILADTVEAVIGATYLDQGLDAATEFV 162
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P + D K+ LQ+ + +P Y V E GP + +++T
Sbjct: 163 HRLFDPLIAESAQLGAGLDWKTSLQELTAAVGL------GVPEYVVTES-GPDHEKTFTA 215
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A + +G S ++AE AA+ A
Sbjct: 216 AARVAGQDHGSGSGRSKKEAEQKAAESA 243
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ + P++ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 70 GDSVLGLVVTDTLYRLHPEVAEGTLAKLRAAVVNSRALAEVGRGLDLGAFIRLGKGEEGT 129
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EA++GA +LD G+D A +
Sbjct: 130 GGRDKSSILADTVEAVIGATYLDQGLDAATE 160
>gi|289209108|ref|YP_003461174.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
gi|288944739|gb|ADC72438.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
Length = 236
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 249 VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRT 308
T RS G N N+RLEFLGD VL L+ +D LY P+ EG L+ LR++LVN +
Sbjct: 32 ALTHRSAGGRN-----NERLEFLGDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRES 86
Query: 309 QSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCF 364
+ + + G+ N+ + + R AD +EA +G Y + GM+A F +
Sbjct: 87 LAALARESGLEGTLNLGQGERKSGGQRRDSILADAVEALIGVTYREAGMQAARDFTLALY 146
Query: 365 FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYF 424
RL + DPK++LQ+ L G ++P+Y+V+E VGP + R +TV+V+
Sbjct: 147 AERLGNLPSAESLKDPKTRLQE------QLQGRNAELPVYEVLEVVGPDHQRRFTVSVHL 200
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ PD EG L RAA+V + LA LA+ GLE + G
Sbjct: 50 GDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRESLAALARESGLEGTLNLGQGERKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD--NEVRFKQWMYYPQHPLQE 210
+A+ EAL+G + + G+ A + F+ LY + + + + P+ LQE
Sbjct: 110 GGQRRDSILADAVEALIGVTYREAGMQAA-RDFTLALYAERLGNLPSAESLKDPKTRLQE 168
Query: 211 Q 211
Q
Sbjct: 169 Q 169
>gi|406950556|gb|EKD80794.1| hypothetical protein ACD_40C00009G0005 [uncultured bacterium]
Length = 230
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 16/194 (8%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
SN+RLE+LGD VL+L TS +LY+ +P+ EG L+ +R++LV + + + D+G FA+
Sbjct: 41 SNERLEYLGDAVLELATSHFLYSSYPDFQEGMLTNVRAALVRTESLAKIAEDLG---FAD 97
Query: 324 IIN-PKVDLKMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE 376
+I K + R AD EAFLGA+Y+D+G + C + + Q + +
Sbjct: 98 LIKMSKGEEATGGRLNRSILADTFEAFLGAIYLDQGYDVCVTILEKHLLQKAQAVLQTET 157
Query: 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
+ D KS LQ+ + P+Y +I GP + + + + V +E A+ TG S
Sbjct: 158 YKDNKSLLQEIAQSRY------KSTPLYTLISESGPDHDKQFVMRVEIGDESYAQGTGKS 211
Query: 437 IQQAEMNAAKVALQ 450
Q A+ +AAK L+
Sbjct: 212 KQTAQEDAAKNTLE 225
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + TS L+ +PD +EG L RAA+V+ + LA +A+ +G D + + G +
Sbjct: 49 GDAVLELATSHFLYSSYPDFQEGMLTNVRAALVRTESLAKIAEDLGFADLIKMSKGEEAT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV------------ADQVFSSVLYKDN-----EV 195
+ +A+ FEA +GA++LD G DV A V + YKDN E+
Sbjct: 109 GGRLNRSILADTFEAFLGAIYLDQGYDVCVTILEKHLLQKAQAVLQTETYKDNKSLLQEI 168
Query: 196 RFKQWMYYPQHPL-QEQEPDGDRQWV 220
++ P + L E PD D+Q+V
Sbjct: 169 AQSRYKSTPLYTLISESGPDHDKQFV 194
>gi|427441891|ref|ZP_18925469.1| ribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425786917|dbj|GAC46257.1| ribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 198
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 11/198 (5%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T L +R+EFLGD VLQL+ S+YLY +PE +G L+ LR+++V + S +
Sbjct: 3 TRTKLKFYERIEFLGDAVLQLVVSEYLYKRYPEMPQGKLTRLRAAMVCEASFSDFAKECH 62
Query: 318 MPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFIL 373
+ + + + R D+ E+F+GA+Y+D+G +A E+F + FP+L
Sbjct: 63 FDRYIRLGKGEEKSGARQRPSLLCDIFESFIGALYLDQGRQAVEKFVRQVIFPKLDEGRF 122
Query: 374 NQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT 433
+ D KS+LQ+ GE +I Y++I GP N +TV V N+ LAK +
Sbjct: 123 DH-IIDHKSELQELLQQ-----NGEVEIN-YELISETGPDNDLVFTVQVSAANQVLAKGS 175
Query: 434 GNSIQQAEMNAAKVALQK 451
G+S + AE NAA ALQK
Sbjct: 176 GHSKKAAEQNAANKALQK 193
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P++ +G L RAA+V + AK + ++ G +
Sbjct: 17 GDAVLQLVVSEYLYKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKS 76
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRF 197
+ + + FE+ +GAL+LD G ++ V++ K +E RF
Sbjct: 77 GARQRPSLLCDIFESFIGALYLDQGRQAVEKFVRQVIFPKLDEGRF 122
>gi|406984879|gb|EKE05786.1| hypothetical protein ACD_19C00176G0008 [uncultured bacterium]
Length = 216
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 113/212 (53%), Gaps = 14/212 (6%)
Query: 245 LLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSL 303
LL + T RS + + G+N+RLEFLGD VL+ + S +YN FP+ EG+L+ LR++L
Sbjct: 9 LLQQALTHRSWVNENSDNHGTNERLEFLGDAVLEFLVSTEIYNKFPKEEEGYLTALRANL 68
Query: 304 VNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQF 359
VN + + V + + + + D + AD +EA +GA+++D+G+EA E+F
Sbjct: 69 VNTKNLAEVAKKLNIGEMIKLSKGEEDGGGRTNSSLLADTVEAIIGALFLDQGIEASEKF 128
Query: 360 CKV-CFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSY 418
K + IL DPKS LQ+ + + L P Y+VI +GP +++ +
Sbjct: 129 IKENILVDTDKKAIL--PLKDPKSLLQE-KVQAKNLPA-----PKYQVISEIGPDHNKEF 180
Query: 419 TVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ V AK TG S +AE +AA AL+
Sbjct: 181 IIEVVINGRPTAKGTGKSKSEAEQDAAGSALK 212
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+ S +++ FP EEG L RA +V ++LA +AK++ + + + + G +
Sbjct: 37 GDAVLEFLVSTEIYNKFPKEEEGYLTALRANLVNTKNLAEVAKKLNIGEMIKLSKGEEDG 96
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
+A+ EA++GALFLD GI+ +++ + D + + + P+ LQE+
Sbjct: 97 GGRTNSSLLADTVEAIIGALFLDQGIEASEKFIKENILVDTDKKAILPLKDPKSLLQEK 155
>gi|339636847|emb|CCC15654.1| ribonuclease 3 [Lactobacillus pentosus IG1]
Length = 229
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 15/219 (6%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G++FN LLA FT S + + L +R+EFLGD VL+L+ S+YLY + + +G
Sbjct: 14 GIVFNDPALLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYKDMPQG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ LR+++V + + + P + + + + +R D+ E+F+G++Y+D
Sbjct: 74 KLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKARAWERDSLLCDIFESFVGSLYLD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEH 409
+G E +F FP+L + + D K+ LQ+ DG D+ I Y++IE
Sbjct: 134 QGREPVLKFVHQVIFPKLDEGRFDGVF-DYKTTLQEYL----QRDG---DVAIEYQLIEQ 185
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP N RSY VAV +++ + G+S ++AE +AA+ A
Sbjct: 186 EGPANERSYEVAVVADGQKIGEGRGHSKKEAEQSAARQA 224
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ + D+ +G L RAA+V + A A+ ++ G
Sbjct: 51 GDAVLELVVSEYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
E + + FE+ +G+L+LD G + + V++ K +E RF Y +
Sbjct: 111 RAWERDSLLCDIFESFVGSLYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYL 170
Query: 212 EPDGD 216
+ DGD
Sbjct: 171 QRDGD 175
>gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338]
gi|336064708|ref|YP_004559567.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338]
gi|334282908|dbj|BAK30481.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
Length = 228
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 19/227 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
L+ G++F LL FT S Y N L + N+RLEFLGD VLQL+ S YL+
Sbjct: 8 LQQDFGIVFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLFKK 65
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+P+ EG LS +RS +V + + G F + N + ++R DL EAF
Sbjct: 66 YPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILGDLFEAF 125
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+ +D+G+EA +F P+++ + D K+ LQ+ G D+ I
Sbjct: 126 LGALLMDQGVEAVNKFLNQVMIPQVEKGNF-ERVKDYKTTLQELLQ-------GHGDVTI 177
Query: 404 -YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+V GP +++ + V VY ++ ++ G S + AE +AAK AL
Sbjct: 178 DYRVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNAL 224
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G ++F+ +G +
Sbjct: 50 GDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL +D G++ ++ + V+ K N R K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 235
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 13/218 (5%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
F LL FT S + + L +R+EFLGD VLQL+ S+YLY +PE +G L+
Sbjct: 20 FTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYPEMPQGKLT 79
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGM 353
LR+++V + S + + + + + R D+ E+F+GA+Y+D+G
Sbjct: 80 RLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIGALYLDQGR 139
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
+A E+F + FP+L + D KS+LQ+ GE +I Y++I GP
Sbjct: 140 QAVEKFVRQVIFPKLDEGRFDH-IIDHKSELQELLQR-----NGEVEIN-YELISETGPD 192
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
N +TV V N+ LAK +G+S + AE NAA ALQK
Sbjct: 193 NDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQK 230
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P++ +G L RAA+V + AK + ++ G +
Sbjct: 54 GDAVLQLVVSEYLYKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKS 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRF 197
+ + + FE+ +GAL+LD G ++ V++ K +E RF
Sbjct: 114 GARQRPSLLCDIFESFIGALYLDQGRQAVEKFVRQVIFPKLDEGRF 159
>gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316]
gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909]
gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21]
gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B]
gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1]
gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111]
gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515]
gi|406709215|ref|YP_006763941.1| ribonuclease III [Streptococcus agalactiae GD201008-001]
gi|417004889|ref|ZP_11943528.1| ribonuclease III [Streptococcus agalactiae FSL S3-026]
gi|421146996|ref|ZP_15606697.1| ribonuclease III [Streptococcus agalactiae GB00112]
gi|421531466|ref|ZP_15977848.1| ribonuclease III [Streptococcus agalactiae STIR-CD-17]
gi|424049712|ref|ZP_17787263.1| ribonuclease III [Streptococcus agalactiae ZQ0910]
gi|81457210|sp|Q8E680.1|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|90101649|sp|Q3K1Y2.1|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|90101650|sp|Q8E0K7.2|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909]
gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21]
gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515]
gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111]
gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1]
gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B]
gi|341577871|gb|EGS28278.1| ribonuclease III [Streptococcus agalactiae FSL S3-026]
gi|389648793|gb|EIM70284.1| ribonuclease III [Streptococcus agalactiae ZQ0910]
gi|401686411|gb|EJS82390.1| ribonuclease III [Streptococcus agalactiae GB00112]
gi|403643289|gb|EJZ04071.1| ribonuclease III [Streptococcus agalactiae STIR-CD-17]
gi|406650100|gb|AFS45501.1| ribonuclease III [Streptococcus agalactiae GD201008-001]
Length = 228
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F + LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S YL+ +P+ EG LS LRS +V + + G + + + ++R
Sbjct: 59 SQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E F P ++ + D K+ LQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTY-ERVKDYKTSLQELLQS------ 171
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
D+ I Y+V GP +++ + V V E L++ G S + AE +AAK AL
Sbjct: 172 -HGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G + ++ G +
Sbjct: 50 GDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++V + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 146
>gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4]
gi|418069035|ref|ZP_12706315.1| ribonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4]
gi|357537768|gb|EHJ21791.1| ribonuclease III [Pediococcus acidilactici MA18/5M]
Length = 232
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 13/218 (5%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
F LL FT S + + L +R+EFLGD VLQL+ S+YLY +PE +G L+
Sbjct: 17 FTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYPEMPQGKLT 76
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGM 353
LR+++V + S + + + + + R D+ E+F+GA+Y+D+G
Sbjct: 77 RLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIGALYLDQGR 136
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
+A E+F + FP+L + D KS+LQ+ GE +I Y++I GP
Sbjct: 137 QAVEKFVRQVIFPKLDEGRFDH-IIDHKSELQELLQR-----NGEVEIN-YELISETGPD 189
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
N +TV V N+ LAK +G+S + AE NAA ALQK
Sbjct: 190 NDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQK 227
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P++ +G L RAA+V + AK + ++ G +
Sbjct: 51 GDAVLQLVVSEYLYKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRF 197
+ + + FE+ +GAL+LD G ++ V++ K +E RF
Sbjct: 111 GARQRPSLLCDIFESFIGALYLDQGRQAVEKFVRQVIFPKLDEGRF 156
>gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R]
gi|339301800|ref|ZP_08650884.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R]
gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
Length = 236
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F + LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 9 MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 66
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S YL+ +P+ EG LS LRS +V + + G + + + ++R
Sbjct: 67 SQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTIL 126
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E F P ++ + D K+ LQ+ +
Sbjct: 127 GDLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTY-ERVKDYKTSLQELLQS------ 179
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
D+ I Y+V GP +++ + V V E L++ G S + AE +AAK AL
Sbjct: 180 -HGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 232
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G + ++ G +
Sbjct: 58 GDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKS 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++V + V+
Sbjct: 118 GGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 154
>gi|389815314|ref|ZP_10206660.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
gi|388466093|gb|EIM08402.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
Length = 251
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 132/252 (52%), Gaps = 21/252 (8%)
Query: 211 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQ 266
++P+ +Q V + + L+ V FN LL + FT S Y N N+
Sbjct: 5 KKPNYQKQSVVKESAKAAFEQLQKELNVSFNKPALLYQAFTHSS--YVNEHRRKQFTDNE 62
Query: 267 RLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN 326
RLEFLGD VL+L S YLY +PE EG L+ LR+++V + + N++G F I+
Sbjct: 63 RLEFLGDAVLELSVSHYLYMKYPEMSEGELTKLRAAIVCEPSLVLFANELG--FGKYILL 120
Query: 327 PKVDLKMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
K + R AD+ E+++GA+Y+D+G+E F ++ FP+++ + D
Sbjct: 121 GKGEELTGGRTRPALLADVFESYIGALYLDQGLEPVVTFLEMVLFPKVEIGAFSHVM-DY 179
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
KS+LQ+ ++ + G + Y++I+ +GP +SR + V ++ L G S ++A
Sbjct: 180 KSQLQEL---IQQKNTGALN---YEIIDEIGPAHSRVFVTRVSLADKELGVGNGRSKKEA 233
Query: 441 EMNAAKVALQKC 452
E AA++A++K
Sbjct: 234 EQQAAQLAIRKL 245
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P++ EG L RAAIV L A +G ++L G +L
Sbjct: 68 GDAVLELSVSHYLYMKYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+A+ FE+ +GAL+LD G++ VL+ E+ F M Y LQE
Sbjct: 128 GGRTRPALLADVFESYIGALYLDQGLEPVVTFLEMVLFPKVEIGAFSHVMDYKSQ-LQE 185
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 36 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 95
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+EA +
Sbjct: 96 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLEAAGELV 155
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 156 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 208
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 209 AARVGGVSYGTGTGRSKKEAEQQAAESA 236
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 63 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G++ A + +F ++ K + E+
Sbjct: 123 GGRDKASILADTLEAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 182
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 183 TATEGLGVPEYLVTETGPDHEKTFT 207
>gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852429|ref|ZP_11909574.1| ribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739918|gb|EHI65150.1| ribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 230
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 24/237 (10%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L+ + ++FN LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLKALLKETFNIVFNDQDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P EG LS LRS +V R +S+ F I K + K R
Sbjct: 59 SEYLFKKYPSKPEGDLSKLRSMIV--REESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E F P+++ ++ D K+ LQ+
Sbjct: 117 ILGDLFEAFLGALLLDKGIEDVRLFLNQVMIPQVEKGNF-EKVKDYKTSLQEVL------ 169
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ D+ I Y+V++ GP +++ + VA+ E +++ G S + AE NAAK AL+
Sbjct: 170 -QAKGDVQIDYQVVKESGPAHAKQFEVAILVNQEIISRGIGKSKKIAEQNAAKKALE 225
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L+ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFKKYPSKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLYKDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GI+ +QV + K N + K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGIEDVRLFLNQVMIPQVEKGNFEKVKDYKTSLQEVL 169
Query: 209 QEQEPDGDRQ 218
Q + GD Q
Sbjct: 170 QAK---GDVQ 176
>gi|347521284|ref|YP_004778855.1| ribonuclease III [Lactococcus garvieae ATCC 49156]
gi|385832667|ref|YP_005870442.1| ribonuclease III [Lactococcus garvieae Lg2]
gi|420143885|ref|ZP_14651373.1| Ribonuclease 3 (Ribonuclease III) [Lactococcus garvieae IPLA 31405]
gi|343179852|dbj|BAK58191.1| ribonuclease III [Lactococcus garvieae ATCC 49156]
gi|343181820|dbj|BAK60158.1| ribonuclease III [Lactococcus garvieae Lg2]
gi|391855337|gb|EIT65886.1| Ribonuclease 3 (Ribonuclease III) [Lactococcus garvieae IPLA 31405]
Length = 231
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 23/225 (10%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F LL FT S YTN + +N+RLEFLGD L LI S+YLY +P+
Sbjct: 13 GIKFADEELLKIAFTHSS--YTNEERLPKVANNERLEFLGDVALSLIISEYLYRTYPDKL 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG LS +RSS+V + + F + N + ++R +L EAFLGA++
Sbjct: 71 EGELSKMRSSIVRTESLANFSRQCEFGRFLRLGNGEEKTGGRNRDTNLENLFEAFLGALF 130
Query: 349 IDKGMEACEQFCKVCFFPRLQ---YFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
+D GME +F P ++ YF + D K+ LQ+ +DG I YK
Sbjct: 131 LDAGMEEVRRFINRVVIPHVKADDYF----KVIDYKTNLQEVL----QVDG--ETIIEYK 180
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
++E GP ++R + AVY + L + G S + AE AA+ A++
Sbjct: 181 ILEETGPAHAREFVAAVYNNGKELGRGRGKSKKVAEQKAAENAIK 225
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
I S +L+ +PD EG L+ R++IV+ + LA+ +++ F+ +G +
Sbjct: 56 LIISEYLYRTYPDKLEGELSKMRSSIVRTESLANFSRQCEFGRFLRLGNGEEKTGGRNRD 115
Query: 159 HAMANCFEALMGALFLDGGID--------------VADQVFSSVLYKDN 193
+ N FEA +GALFLD G++ AD F + YK N
Sbjct: 116 TNLENLFEAFLGALFLDAGMEEVRRFINRVVIPHVKADDYFKVIDYKTN 164
>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340783042|ref|YP_004749649.1| ribonuclease III [Acidithiobacillus caldus SM-1]
gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340557193|gb|AEK58947.1| Ribonuclease III [Acidithiobacillus caldus SM-1]
Length = 232
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ L+ + G +F LL + T RS G + N+RLEFLGD L + + LY
Sbjct: 1 MKSLERLQQAIGYVFQDEVLLRQALTHRSAGAQH-----NERLEFLGDAALNFVVAAELY 55
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP---KVDLKMKD--RADLL 340
FP+ EG+LS +R+ LV T + V +I + + I+ P + +D RAD L
Sbjct: 56 ARFPKVSEGNLSRMRARLVREETLAQVAGEIALA-DSLILGPGELRSGGARRDSIRADAL 114
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA Y+D G A + + P + + ++E DPK++LQ+ L G
Sbjct: 115 EAIIGAAYLDGGFAAAQGIVRQLIVPLMTEALGDEELRDPKTRLQEF------LQGQGKP 168
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK---VALQKCPS 454
+P Y ++E G + R + + A S ++AE AA+ LQK P+
Sbjct: 169 LPSYSLVEEKGQAHERRFVARCSVQGVPATDAEAGSRRKAEQQAAQQMLEQLQKSPA 225
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + L+ FP + EG L+ RA +V+ + LA +A I L D ++ G
Sbjct: 42 GDAALNFVVAAELYARFPKVSEGNLSRMRARLVREETLAQVAGEIALADSLILGPGELRS 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY------------KDNEVRFKQW 200
A+ EA++GA +LDGG A + ++ +D + R +++
Sbjct: 102 GGARRDSIRADALEAIIGAAYLDGGFAAAQGIVRQLIVPLMTEALGDEELRDPKTRLQEF 161
Query: 201 MYYPQHPL 208
+ PL
Sbjct: 162 LQGQGKPL 169
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLGDTVLQLITSDY 283
+ + L+ G+ F + +LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSS--YVNEHRKRPHEDNERLEFLGDAVLELTVSQY 74
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
L+ FP EG L+ LR+++V + N + F ++ K + R A
Sbjct: 75 LFKKFPHMSEGELTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEELTGGRTRPALLA 132
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ EAF+GA+Y+DKGM+A QF FP++ + D KS+LQ+ DG
Sbjct: 133 DVFEAFIGALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVM-DFKSQLQELV----QRDG- 186
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
+ Y ++E GP +++ + V + L G S ++AE +AA++ALQK ++
Sbjct: 187 -IGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKLKTVVK 245
Query: 458 Q 458
+
Sbjct: 246 E 246
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFKKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D Q ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQ-LQE 180
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 42 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 101
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 102 NSRALAEVGRGLELGSFVRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 161
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 162 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVSE-TGPDHEKTFTA 214
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 215 AARVGGVSYGTGTGRSKKEAEQQAAESA 242
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 69 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFVRLGRGEEGT 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 129 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 188
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 189 TATEGLGVPEYLVSETGPDHEKTFT 213
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 31 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+E+ +
Sbjct: 91 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLESAAELV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 151 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 204 AARVGGVSYGTGTGRSKKEAEQQAAESA 231
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 58 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G++ A + +F ++ K + E+
Sbjct: 118 GGRDKASILADTLEAVIGAVYLDQGLESAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 177
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 178 TATEGLGVPEYLVTETGPDHEKTFT 202
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 44 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 103
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 104 NSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 163
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 164 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 216
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 217 AARVGGVSYGTGTGRSKKEAEQQAAESA 244
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 71 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGT 130
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 131 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 190
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 191 TATEGLGVPEYLVTETGPDHEKTFT 215
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 40 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRSHPDLPEGQLAKLRAAVV 99
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 100 NSRALAGVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDRGLDAASELV 159
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L +G +P Y V E GP + +++T
Sbjct: 160 HRLFDPLIEKSSNLGAGLDWKTSLQE----LTAAEG--LGVPEYLVTE-TGPDHEKTFTA 212
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 213 AARVGGVSYGTGTGRSKKEAEQQAAESA 240
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 67 GDSVLGLVVTDTLYRSHPDLPEGQLAKLRAAVVNSRALAGVGRGLDLGSFIRLGRGEEGT 126
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 127 GGRDKASILADTLEAVIGAVYLDRGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 186
Query: 196 RFKQWMYYPQHPLQEQEPD 214
+ + P++ + E PD
Sbjct: 187 TAAEGLGVPEYLVTETGPD 205
>gi|374300750|ref|YP_005052389.1| ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
Length = 233
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 109/221 (49%), Gaps = 21/221 (9%)
Query: 240 FNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
F LAR T S Y N L L SN+RLEFLGD VL+L S+ L+ FP HEG L
Sbjct: 19 FGQPAYLARALTHSS--YANEHELALESNERLEFLGDAVLELAISECLFQRFPMAHEGQL 76
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +RS LV +T + D+G+ + + +DR AD LEA LGA+++D G
Sbjct: 77 TRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQGGRDRDSVLADALEALLGAVFLDGG 136
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC---LTLRTLDGGEPDIPIYKVIEH 409
A +F F L + D K++LQ+ +R PIY +
Sbjct: 137 YLAAREFVSRTFQDLLPETADLPKVKDYKTRLQEITQQRFKIR---------PIYAQLGT 187
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP ++R Y V V ATG S+++AE NAA++A++
Sbjct: 188 SGPDHARIYEVEVRLPEGASFAATGASLKRAEQNAARLAIE 228
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF FP EG L R+ +V+ + LA A+ +GL+ +L G +
Sbjct: 52 GDAVLELAISECLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQ 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
+ +A+ EAL+GA+FLDGG +A + F S ++D
Sbjct: 112 GGRDRDSVLADALEALLGAVFLDGGY-LAAREFVSRTFQD 150
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 31 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHPDLPEGQLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 91 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 151 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 204 AARVGGVSYGTGTGRSKKEAEQQAAESA 231
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 58 GDSVLGLVVTDTLYTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 118 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 177
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 178 TATEGLGVPEYLVTETGPDHEKTFT 202
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 31 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 91 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAAGELV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 151 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 204 AARVGGVSYGTGTGRSKKEAEQQAAESA 231
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 58 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 118 GGRDKASILADTLEAVIGAVYLDQGLDAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 177
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 178 TATEGLGVPEYLVTETGPDHEKTFT 202
>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
gi|189043307|sp|A4J683.1|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
Length = 246
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYL 284
+Q L+ G +++ LL + T S + N G NQRLEFLGD VL+LI S++L
Sbjct: 6 EQANRLKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHL 65
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y FP+ EG L+ +R+S V + + V + + + + ++R AD
Sbjct: 66 YKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAF 125
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA LGA+Y+D+G+E F C + + + D K++LQ+ L PD
Sbjct: 126 EALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQE------ILQQSSPD 179
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y +++ GP + +++T V +K + + K +G+S ++AE AAK A Q
Sbjct: 180 PLTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQ 229
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ +FPD EG L RA+ V LA +A+ + L + G +
Sbjct: 53 GDAVLELIISEHLYKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
E +A+ FEAL+GA++LD G++++ D V + L +D +
Sbjct: 113 GGRERPSILADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTEL--- 169
Query: 201 MYYPQHPLQEQEPD 214
Q LQ+ PD
Sbjct: 170 ----QEILQQSSPD 179
>gi|400290602|ref|ZP_10792629.1| ribonuclease III [Streptococcus ratti FA-1 = DSM 20564]
gi|399921393|gb|EJN94210.1| ribonuclease III [Streptococcus ratti FA-1 = DSM 20564]
Length = 231
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 19/223 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFADKELLGTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQRAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS +RS +V + + D + + + + R DL EAFLGA+ +
Sbjct: 72 GDLSKMRSMIVREESLAGFSRDCEFDRYIKLGKGEEKSGGRKRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
D G+EA E F P+++ + D K+ LQ+ L +DG D+ I Y+V++
Sbjct: 132 DAGIEAVETFLGQVVIPQVENGNY-ERVTDYKTALQE----LLQVDG---DVFIDYEVLK 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP +S+ + VAV +++L+ G S + AE AAK AL+K
Sbjct: 184 ESGPAHSKYFEVAVAVNHKQLSHGAGRSKKLAEQEAAKNALEK 226
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +LF +P EG L+ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLTISRYLFDKYPQRAEGDLSKMRSMIVREESLAGFSRDCEFDRYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + + FEA +GAL LD GI+ + V+
Sbjct: 110 GGRKRDTILGDLFEAFLGALLLDAGIEAVETFLGQVV 146
>gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI]
gi|189043329|sp|A5D1H6.1|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI]
Length = 241
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 122/244 (50%), Gaps = 17/244 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLY 285
+L L+ G+ + LL R T S Y N G +NQRLEFLGD VL+L SDYLY
Sbjct: 7 KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
PE EG L+ LR+S+V + + V ++ + + + +DR AD E
Sbjct: 67 RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A LGA+Y+D+G+E P + + + D K++LQ+ L GGE
Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQE----LVQQRGGEQ-- 180
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP--SICPQL 459
Y +++ GP + +S+T V ++ + + TG S ++AE AAK AL K S C
Sbjct: 181 VQYVILKEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMKSDLGSAC--- 237
Query: 460 DHQK 463
+H+K
Sbjct: 238 NHKK 241
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ P+++EG L RA++V LA +A+ + L + G +
Sbjct: 53 GDAVLELAVSDYLYRSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ FEAL+GA++LD G++ A
Sbjct: 113 GGRDRPSILADAFEALLGAVYLDQGLEKA 141
>gi|289526478|pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif
Length = 85
Score = 108 bits (269), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/74 (67%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
NDPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SI
Sbjct: 1 NDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSI 59
Query: 438 QQAEMNAAKVALQK 451
QQAEM AA AL+K
Sbjct: 60 QQAEMGAAMDALEK 73
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 95 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAAGELV 154
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 155 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 207
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 208 AARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLDAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 181
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 182 TATEGLGVPEYLVTETGPDHEKTFT 206
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 29 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 88
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 89 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 148
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 149 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 201
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 202 AARVGGVSYGTGTGRSKKEAEQQAAESA 229
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 56 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 115
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 116 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 175
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 176 TATEGLGVPEYLVTETGPDHEKTFT 200
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 108/211 (51%), Gaps = 17/211 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 95 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 154
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ + +L +P Y V E GP + ++
Sbjct: 155 HRLFDPLIDRSSNLGAGLDW---KTSLQELTAS-ESL-----GVPEYLVTE-TGPDHEKT 204
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T A TG S ++AE AA+ A
Sbjct: 205 FTAAARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ +A+ EA++GA++LD G+D A ++
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLDAASEL 153
>gi|254556537|ref|YP_003062954.1| ribonuclease III [Lactobacillus plantarum JDM1]
gi|300767266|ref|ZP_07077178.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308180480|ref|YP_003924608.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
gi|380032465|ref|YP_004889456.1| ribonuclease III [Lactobacillus plantarum WCFS1]
gi|418275229|ref|ZP_12890552.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum NC8]
gi|448821148|ref|YP_007414310.1| Ribonuclease 3 [Lactobacillus plantarum ZJ316]
gi|38258332|sp|Q88WK0.1|RNC_LACPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254045464|gb|ACT62257.1| ribonuclease III [Lactobacillus plantarum JDM1]
gi|300495085|gb|EFK30241.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308045971|gb|ADN98514.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
gi|342241708|emb|CCC78942.1| ribonuclease III [Lactobacillus plantarum WCFS1]
gi|376008780|gb|EHS82109.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum NC8]
gi|448274645|gb|AGE39164.1| Ribonuclease 3 [Lactobacillus plantarum ZJ316]
Length = 231
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 15/219 (6%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G++FN LLA FT S + + L +R+EFLGD VL+L+ S+YLY + + +G
Sbjct: 14 GIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYKDMPQG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ LR+++V + + + P + + + +R D+ E+F+GA+Y+D
Sbjct: 74 KLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLCDIFESFVGALYLD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEH 409
+G E +F FP+L + + D K+ LQ+ DG D+ I Y++IE
Sbjct: 134 QGREPVLKFVHQVIFPKLDEGRFDGVF-DYKTTLQEYL----QRDG---DVAIDYQLIEQ 185
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP N RSY +AV +++ + G+S ++AE +AA+ A
Sbjct: 186 DGPANERSYEIAVLADGQKIGEGWGHSKKEAEQSAARQA 224
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ + D+ +G L RAA+V + A A+ ++ G
Sbjct: 51 GDAVLELVVSEYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
H E + + FE+ +GAL+LD G + + V++ K +E RF Y +
Sbjct: 111 HAWERDSLLCDIFESFVGALYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYL 170
Query: 212 EPDGD 216
+ DGD
Sbjct: 171 QRDGD 175
>gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16]
gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16]
Length = 230
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 129/234 (55%), Gaps = 29/234 (12%)
Query: 231 YLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLYN 286
YL G+ F + LL FT S Y N + G+ ++LEFLGD VL+L SDYLY
Sbjct: 9 YLFEEYGIKFKNETLLEEAFTHSS--YVNEHPKESAGNYEKLEFLGDAVLELAVSDYLYR 66
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEA 342
HFP +EG L+ LRS++V S + G P N+ + ++R D+ EA
Sbjct: 67 HFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLLEDVFEA 126
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP---KSKLQQCCLTLRTLDGGEP 399
F GA+++D+GM+A ++F K+ +P I + E+ D K+ LQ+ L ++G
Sbjct: 127 FNGALFLDQGMDAVQKFLKLTVYP----LIDSGEFTDSRDYKTDLQE----LLQVNGA-- 176
Query: 400 DIPI-YKVIEHVG-PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
I I Y+V+E P+N + VA++ + +++++ +G++ + AE AAK+AL K
Sbjct: 177 -IKIEYQVLEETKLPSN---FKVALFVEGKKISEGSGHNKKAAEQVAAKLALIK 226
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FP + EG L R+ IV+ + + A G + G +
Sbjct: 52 GDAVLELAVSDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKT 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E K + + FEA GALFLD G+D + +Y
Sbjct: 112 GARERKTLLEDVFEAFNGALFLDQGMDAVQKFLKLTVY 149
>gi|421277210|ref|ZP_15728030.1| ribonuclease III [Streptococcus mitis SPAR10]
gi|395876491|gb|EJG87567.1| ribonuclease III [Streptococcus mitis SPAR10]
Length = 232
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F+ +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELETVLEQRFGLVFSDKQLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYQKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDLLTVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI +GP + + + V V + + L + G S + AE AAK A+++ C
Sbjct: 173 GDVDIR-YQVISEIGPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAAKNAVEEGLDSC 231
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYQKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLD 175
+ + FEA +GAL LD
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLD 132
>gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952]
gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952]
Length = 233
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 15/206 (7%)
Query: 238 VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
++F I LL + FT S + N+ L N+RLEFLGD VL+L+ S YLY FPE EG
Sbjct: 18 IVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVSQYLYRKFPEIPEGK 77
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDK 351
L+ LR+S+V + + + G + + + + + R DL E+FLGA+Y+D+
Sbjct: 78 LTKLRASMVREDSLAEFARECGFDQYIRLGKGEENSGGRQRNSLLCDLFESFLGALYLDQ 137
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHV 410
+EA QF K FP++ + E D K+KLQ+ D+ I Y++
Sbjct: 138 ELEAVNQFLKKVVFPKVDAGAFSHEM-DHKTKLQEVLQRA-------GDVFIDYRLTNEE 189
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNS 436
GP + R + VY + + + G S
Sbjct: 190 GPAHERVFWTEVYCDGQLIGRGQGKS 215
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ FP+I EG L RA++V+ LA A+ G + ++ G +
Sbjct: 54 GDAVLELLVSQYLYRKFPEIPEGKLTKLRASMVREDSLAEFARECGFDQYIRLGKGEENS 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD ++ +Q V++
Sbjct: 114 GGRQRNSLLCDLFESFLGALYLDQELEAVNQFLKKVVF 151
>gi|322387562|ref|ZP_08061171.1| ribonuclease III [Streptococcus infantis ATCC 700779]
gi|419843098|ref|ZP_14366422.1| ribonuclease III [Streptococcus infantis ATCC 700779]
gi|321141429|gb|EFX36925.1| ribonuclease III [Streptococcus infantis ATCC 700779]
gi|385703200|gb|EIG40326.1| ribonuclease III [Streptococcus infantis ATCC 700779]
Length = 232
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F+ +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELETVLEQRFGLVFSDKQLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDLLTVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI +GP + + + V V + + L + G S + AE AAK A+++ C
Sbjct: 173 GDVDIR-YQVISEIGPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAAKNAVEEGLDSC 231
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLD 175
+ + FEA +GAL LD
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLD 132
>gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92]
gi|402546497|ref|ZP_10843372.1| ribonuclease III [Campylobacter sp. FOBRC14]
gi|189043298|sp|A7H186.1|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92]
gi|401017310|gb|EJP76071.1| ribonuclease III [Campylobacter sp. FOBRC14]
Length = 223
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 129/234 (55%), Gaps = 22/234 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ L+ G F + +LL T +S T L SN+RLEFLGD V+ LI +YL+
Sbjct: 1 MKDLENLQKLLGYEFENTKLLNEALTHKS---TKLPY-SNERLEFLGDAVMDLIVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----E 341
F + +EG +S LR++LVN ++ + + + + F ++ + + +++A LL E
Sbjct: 57 KKFSKTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFE 116
Query: 342 AFLGAMYIDKGMEACEQFC----KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
A +GA+Y++ G++ + ++C +P++ + L +++ ++ Q L
Sbjct: 117 AVMGAVYLEAGLDKVREIAVRLLEIC-YPKIDFSHLVKDYKTALQEITQASL-------- 167
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
PIY+++ GP + + + +A+ ++ +++A NS ++A+ AAK+AL+K
Sbjct: 168 -GTTPIYELVRSFGPDHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEK 220
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I +LF F EG ++ RAA+V + A++A+ + + +F+ +
Sbjct: 43 GDAVMDLIVGEYLFKKFSKTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +++ FEA+MGA++L+ G+D ++ +L
Sbjct: 103 GGREKASLLSDAFEAVMGAVYLEAGLDKVREIAVRLL 139
>gi|417936280|ref|ZP_12579597.1| ribonuclease III [Streptococcus infantis X]
gi|343403189|gb|EGV15694.1| ribonuclease III [Streptococcus infantis X]
Length = 232
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 17/233 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
LE G++F+ +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY
Sbjct: 8 LEQRFGLVFSDKQLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+P+ EG LS LR+ +V + + D F + + ++R D EAF
Sbjct: 66 YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+ +DK + ++F P+++ D K+ LQ+ G+ DI
Sbjct: 126 LGALLLDKDLLTVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----NGDVDI-C 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
Y+VI +GP + + + V V + + L K G S + AE AAK A+++ C
Sbjct: 179 YQVISEIGPAHDKMFEVEVLVEGQSLGKGQGRSKKLAEQEAAKNAVEEGLDSC 231
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLD 175
+ + FEA +GAL LD
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLD 132
>gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396]
gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396]
gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
Length = 229
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++FN LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFNQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
+P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 64 KRYPNKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILGDLWE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ T+D
Sbjct: 124 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDR-VTDYKTALQERLQVNGTVD------ 176
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
Y VI+ GP +++ +T+ V + L+ G S
Sbjct: 177 ITYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L+ +P+ EG ++ R+ IV+ + LA +K G E ++ G +
Sbjct: 50 GDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 110 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146
>gi|418017606|ref|ZP_12657162.1| ribonuclease III [Streptococcus salivarius M18]
gi|345526455|gb|EGX29766.1| ribonuclease III [Streptococcus salivarius M18]
Length = 229
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 64 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G DI
Sbjct: 124 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDR-VTDYKTALQE-----RLQVNGTVDI 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
Y VI+ GP +++ +T+ V + L+ G S
Sbjct: 178 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 50 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 110 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 95 NSRALAEVSRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAGELV 154
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 155 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 207
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 208 AARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLDSAGELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 181
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 182 TATEGLGVPEYLVTETGPDHEKTFT 206
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 31 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 91 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 151 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 204 AARVGGVSYGTGTGRSKKEAEQQAAESA 231
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 58 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 118 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 177
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 178 TATEGLGVPEYLVTETGPDHEKTFT 202
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 95 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 154
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 155 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 207
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 208 AARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 181
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 182 TATEGLGVPEYLVTETGPDHEKTFT 206
>gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|421894389|ref|ZP_16324878.1| ribonuclease III [Pediococcus pentosaceus IE-3]
gi|122265927|sp|Q03FX0.1|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745]
gi|385272693|emb|CCG90250.1| ribonuclease III [Pediococcus pentosaceus IE-3]
Length = 232
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 13/217 (5%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
FN+ LL FT S + + L +R+EFLGD VLQLI S+YL+ +PE +G L+
Sbjct: 17 FNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVSEYLFKRYPEMPQGKLT 76
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGM 353
LR+++V + S + + + + + R+ D+ E+F+GA+Y+D+G
Sbjct: 77 RLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLCDIFESFIGALYLDQGR 136
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
A E+F ++ FP+L + D KS+LQ+ G+ +I Y+++ GP
Sbjct: 137 AAVERFVRIVIFPKLDEGKFDH-IIDHKSELQELLQK-----NGDVEID-YELVSEEGPE 189
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
N +TV+V +++LA TG+S + AE NAA ALQ
Sbjct: 190 NDLIFTVSVTADHKKLATGTGHSKKVAEQNAANQALQ 226
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P++ +G L RAA+V + AK + ++ G +
Sbjct: 51 GDAVLQLIVSEYLFKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRF 197
+ + + FE+ +GAL+LD G ++ V++ K +E +F
Sbjct: 111 GARQRSSLLCDIFESFIGALYLDQGRAAVERFVRIVIFPKLDEGKF 156
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 32 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 91
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V ++ + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 92 NSRALADVGRELELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 151
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L +G +P Y V E GP + +++T
Sbjct: 152 HRLFDPLIEKSSNLGAGLDWKTSLQE----LTAAEG--LGVPEYLVSEE-GPDHEKTFTA 204
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 205 AARVGGVSYGTGTGRSKKEAEQQAAESA 232
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 59 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALADVGRELELGSFIRLGRGEEGT 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 119 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 178
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E+ PD ++ +
Sbjct: 179 TAAEGLGVPEYLVSEEGPDHEKTFT 203
>gi|398831537|ref|ZP_10589715.1| ribonuclease III [Phyllobacterium sp. YR531]
gi|398212244|gb|EJM98853.1| ribonuclease III [Phyllobacterium sp. YR531]
Length = 238
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 16/222 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN-QRLEFLGDTVLQLITSDYLYNH 287
+Q LE + +F + L R T S + GS+ +RLEFLGD VL L+ +D L+
Sbjct: 8 VQKLEEKTKHVFRDLGRLERALTHSS---ARPSAGSDYERLEFLGDRVLGLVIADMLFRA 64
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKD-RADLLEAF 343
+P EG LSL +SLVN T + V ++IG+ F + + D ++K RAD++E+
Sbjct: 65 YPTAAEGELSLRLNSLVNADTCAAVADEIGLHEFIKTGSDVKGLADKRLKSLRADVVESL 124
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ +Y+D G+EA + F + + R + N DPK++LQ+ DG + P+
Sbjct: 125 IATIYLDGGLEAAQPFIERYWNARSKGS--NSAQRDPKTELQEWA---HQQDGAQ---PL 176
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
Y V+E GP + +T+ V K A G S + AE AA
Sbjct: 177 YSVVERTGPDHDPQFTIRVNVKGFEPATGKGRSKRLAEQEAA 218
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 22/147 (14%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDL- 151
G+ + + LF +P EG L+ ++V A +A IGL +F+ GSD+
Sbjct: 49 GDRVLGLVIADMLFRAYPTAAEGELSLRLNSLVNADTCAAVADEIGLHEFI--KTGSDVK 106
Query: 152 -CHEVELKHAMANCFEALMGALFLDGGIDVADQVF-----------SSVLYKDNEVRFKQ 199
+ LK A+ E+L+ ++LDGG++ A Q F S+ +D + ++
Sbjct: 107 GLADKRLKSLRADVVESLIATIYLDGGLEAA-QPFIERYWNARSKGSNSAQRDPKTELQE 165
Query: 200 WMYYPQ--HPL----QEQEPDGDRQWV 220
W + PL + PD D Q+
Sbjct: 166 WAHQQDGAQPLYSVVERTGPDHDPQFT 192
>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 233
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
Q LE++ G F + LL R T RS + N+R E+LGD +L+ + S LY +P
Sbjct: 10 QLLEHALGYSFQNPELLQRALTHRSFSADH-----NERFEYLGDALLETVISVALYRRYP 64
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLG 345
E EG L+ LR+++V + + +V+ + + + + + ++ K R AD +EA +
Sbjct: 65 ESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEAIIA 124
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D CEQ F P + + DPK++LQ+ L + +P+Y+
Sbjct: 125 AVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQE------YLQSRDLPLPVYE 178
Query: 406 VIEHVGPTNSRSYTVAVYFKNERL-AKATGNSIQQAEMNAAKV 447
++E GP +++ +T++ K+ER AT +S ++AE AA++
Sbjct: 179 LVEEKGPEHAKIFTISA--KSERFCTTATASSRKKAEQAAAEL 219
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S+ L+ +P+ EG L RAAIV++ LA +AK++ L ++ G
Sbjct: 47 GDALLETVISVALYRRYPESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKS 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL--------YKDNEVRFKQW 200
+ +A+ EA++ A++LD +Q+ F+ + KD + R +++
Sbjct: 107 GGKRRESILADAVEAIIAAVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQEY 166
Query: 201 MYYPQHPL 208
+ PL
Sbjct: 167 LQSRDLPL 174
>gi|414154272|ref|ZP_11410591.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454063|emb|CCO08495.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 249
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 12/233 (5%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLIT 280
S L +Q L+ G +++ LL + T S + + G NQRLEFLGD VL+L+
Sbjct: 5 SKLDEQTHRLKQRLGFQWHNPSLLIQALTHSSCVHESRGHGIYHNQRLEFLGDAVLELVV 64
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+ LY FP+ EG L+ +R++ V + + ++ + + + ++R
Sbjct: 65 SEELYRMFPDRTEGELTKMRAASVCEPSLAKAARELDLGRCLRMGRGEERSGGRERPSIL 124
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
AD EA LGA+Y+D+G+E +F C P + + + D K++LQ+ TL
Sbjct: 125 ADAFEALLGAIYLDQGLEEARRFVLSCLKPIIDDVVAGRLDRDYKTELQE------TLQQ 178
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
P+ +YK++ GP + +++T V+++ + +G+S ++AE AAK A
Sbjct: 179 TSPEPLVYKIMGESGPDHDKTFTAGVFYRGRVIGTGSGHSKKEAEQQAAKDAF 231
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S L+ +FPD EG L RAA V LA A+ + L + G +
Sbjct: 56 GDAVLELVVSEELYRMFPDRTEGELTKMRAASVCEPSLAKAARELDLGRCLRMGRGEERS 115
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +A+ FEAL+GA++LD G++ A + S L
Sbjct: 116 GGRERPSILADAFEALLGAIYLDQGLEEARRFVLSCL 152
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 28 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 87
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 88 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 147
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L +G +P Y V E GP + +++T
Sbjct: 148 HRLFDPLIEKSSNLGAGLDWKTSLQE----LTAAEG--LGVPEYLVTE-TGPDHEKTFTA 200
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 201 AARVGGVSYGTGTGRSKKEAEQQAAESA 228
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 55 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 115 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 174
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 175 TAAEGLGVPEYLVTETGPDHEKTFT 199
>gi|374853052|dbj|BAL55970.1| ribonuclease III [uncultured planctomycete]
Length = 251
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 11/226 (4%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
LQ + + G F ++ LL T SM + L GSN+RLEFLGD VL LI + LY F
Sbjct: 22 LQECQEAIGYRFENLELLRAALTHVSMAASRL--GSNERLEFLGDAVLGLIVCERLYEKF 79
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI---INPKVDLKMKDRADLLEAFLG 345
PE+ EG L+ L+S +V+ R + V + + F + + + D+ EA +G
Sbjct: 80 PEYLEGELTKLKSFIVSRRVCAQVAQTLQLERFLRVGAGVGRSGSVPANLLGDVFEAIIG 139
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D G+EA +++ P + + + KS LQ + P Y+
Sbjct: 140 AIYLDGGLEAAKEWVLRHMGPIIDHIGSTAPLENAKSLLQHLAQKQHGV------TPKYE 193
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
V++ GP +S+ + VA +R A G S ++AE AA AL +
Sbjct: 194 VVDEKGPEHSKCFLVAAVVGEQRFPPAWGRSKKEAEQKAAANALAR 239
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I L+ FP+ EG L ++ IV + A +A+ + LE F+ G
Sbjct: 63 GDAVLGLIVCERLYEKFPEYLEGELTKLKSFIVSRRVCAQVAQTLQLERFLRVGAGVGRS 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
V + + + FEA++GA++LDGG++ A +
Sbjct: 123 GSVP-ANLLGDVFEAIIGAIYLDGGLEAAKE 152
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 11/206 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 38 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 97
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++ +
Sbjct: 98 NSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDKAAELV 157
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L ++G +P Y V E GP + +++T
Sbjct: 158 HRLFDPLIEKSAELGAGLDWKTSLQE----LTAMEG--LGVPEYLVTEE-GPDHEKTFTA 210
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAK 446
A TG S ++AE AA+
Sbjct: 211 AARVGGVSYGTGTGRSKKEAEQQAAE 236
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 65 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKD-------------NEV 195
+ +A+ EA++GA++LD G+D A + +F ++ K E+
Sbjct: 125 GGRDKASILADTLEAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQEL 184
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E+ PD ++ +
Sbjct: 185 TAMEGLGVPEYLVTEEGPDHEKTFT 209
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F ++ LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFKNVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ K
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINK 225
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 39 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 98
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +++ AD LEA +GA+Y+D+G++A +
Sbjct: 99 NSRALAEVGRGLDLGAFIRLGRGEEGTGGRNKASILADTLEAVIGAVYLDQGLDAAAELV 158
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 159 HRLFDPLIEKSAGLGAGLDWKTSLQELTATEGL------GVPEYMVSE-TGPDHEKTFTA 211
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 212 AARVGGVSYGTGTGRSKKEAEQQAAESA 239
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 66 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGT 125
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKD-------------NEV 195
+A+ EA++GA++LD G+D A + +F ++ K E+
Sbjct: 126 GGRNKASILADTLEAVIGAVYLDQGLDAAAELVHRLFDPLIEKSAGLGAGLDWKTSLQEL 185
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 186 TATEGLGVPEYMVSETGPDHEKTFT 210
>gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J]
gi|254807903|sp|B9DRH1.1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J]
Length = 230
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 116/236 (49%), Gaps = 22/236 (9%)
Query: 226 LKQLQYLEYSSGVI-FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K L+ L SS I F LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKNLEALLKSSFAIEFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P EG LS RS +V R +S+ F I K + K R
Sbjct: 59 SEYLFKKYPHKAEGELSKQRSMIV--REESLASFSRHCAFEPYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E +F P+++ ++ ND K+ LQ+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGVEEVRRFLNQVMIPQVEKGNF-EKVNDYKTSLQEI------L 169
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
I YKVI GP +++ + V V L+K G S + AE NAA+ AL+
Sbjct: 170 QAKGDTIIDYKVINESGPAHAKQFEVVVLANQVELSKGIGRSKKLAEQNAAENALK 225
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L+ R+ IV+ + LA ++ E ++ G +
Sbjct: 50 GDAVLQLIISEYLFKKYPHKAEGELSKQRSMIVREESLASFSRHCAFEPYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ + + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEEVRRFLNQVM 146
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 45 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 104
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 105 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 164
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 165 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 217
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 218 AARVGGVSYGTGTGRSKKEAEQQAAESA 245
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 72 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 131
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 132 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 191
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 192 TATEGLGVPEYLVTETGPDHEKTFT 216
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 11/206 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 49 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 108
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++ +
Sbjct: 109 NSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDKAAELV 168
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L ++G +P Y V E GP + +++T
Sbjct: 169 HRLFDPLIEKSAELGAGLDWKTSLQE----LTAMEG--LGVPEYLVTEE-GPDHEKTFTA 221
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAK 446
A TG S ++AE AA+
Sbjct: 222 AARVGGVSYGTGTGRSKKEAEQQAAE 247
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 76 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGT 135
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKD-------------NEV 195
+ +A+ EA++GA++LD G+D A + +F ++ K E+
Sbjct: 136 GGRDKASILADTLEAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQEL 195
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E+ PD ++ +
Sbjct: 196 TAMEGLGVPEYLVTEEGPDHEKTFT 220
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 42 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 101
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 102 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 161
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 162 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 214
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 215 AARVGGVSYGTGTGRSKKEAEQQAAESA 242
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 69 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 129 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 188
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 189 TATEGLGVPEYLVTETGPDHEKTFT 213
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 95 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 154
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L +G +P Y V E GP + +++T
Sbjct: 155 HRLFDPLIEKSSNLGAGLDWKTSLQE----LTAAEG--LGVPEYLVTE-TGPDHEKTFTA 207
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 208 AARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 181
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 182 TAAEGLGVPEYLVTETGPDHEKTFT 206
>gi|406670677|ref|ZP_11077922.1| ribonuclease III [Facklamia hominis CCUG 36813]
gi|405582193|gb|EKB56199.1| ribonuclease III [Facklamia hominis CCUG 36813]
Length = 234
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 22/224 (9%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
+ FN+ L + F S N + +GSN+RLEFLGD VL+++ S++L+N +P EG
Sbjct: 14 IKFNNKDLCQQAFYHTSYVNENRRLIAIGSNERLEFLGDAVLEILVSNFLFNTYPNEPEG 73
Query: 295 HLSLLRSSLVNNRTQSVVCN--------DIGMPFFANIINPKVDLKMKDRADLLEAFLGA 346
LS +R+ LV + + + +G A+ N + L +D EAFLGA
Sbjct: 74 TLSRMRAQLVREDSLAHLARCMHFEDYLRLGKGELASHSNQRDSL----LSDCFEAFLGA 129
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D+G++ C+ F F + Q+F L D K+K Q+ + G I Y++
Sbjct: 130 LYLDQGIDICQAFLNQLFLSKHQHF-LKSAKQDYKTKFQEL-----VQENGSVKIE-YQL 182
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+E GP + + +TV++ + + +AKA+G S + AEM AAK ++
Sbjct: 183 LEKSGPAHHQLFTVSLSLEGKTIAKASGYSKKDAEMLAAKEGIK 226
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S LF+ +P+ EG L+ RA +V+ LAHLA+ + ED++ G
Sbjct: 51 GDAVLEILVSNFLFNTYPNEPEGTLSRMRAQLVREDSLAHLARCMHFEDYLRLGKGELAS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
H + +++CFEA +GAL+LD GID+ Q F + L+
Sbjct: 111 HSNQRDSLLSDCFEAFLGALYLDQGIDIC-QAFLNQLF 147
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 95 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 154
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L +G +P Y V E GP + +++T
Sbjct: 155 HRLFDPLIEKSSNLGAGLDWKTSLQE----LTAAEG--LGVPEYLVTE-TGPDHEKTFTA 207
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 208 AARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 181
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 182 TAAEGLGVPEYLVTETGPDHEKTFT 206
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+ A +
Sbjct: 95 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLSAASELV 154
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ + +L +P Y V E GP + ++
Sbjct: 155 HRLFDPLIDRSSNLGAGLDW---KTSLQELTAS-ESL-----GVPEYLVTE-TGPDHEKT 204
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T A TG S ++AE AA+ A
Sbjct: 205 FTAAARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ +A+ EA++GA++LD G+ A ++
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLSAASELV 154
>gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500]
Length = 1126
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 36/289 (12%)
Query: 81 IQIYRMYMYIHK--------GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 132
++IY+ Y + G++ +F TSI+LF+ FP+ EG L T R+ + N +L
Sbjct: 733 MKIYKNYKFYEGDNQRIEFLGDSVLKFCTSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIE 792
Query: 133 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
+ +++ + D ++K A+ EAL GA++L+ G+ A + +++K
Sbjct: 793 ICDMFEMDEVLRLPQNKD-----DIKKPKADVVEALFGAVYLERGMYEAFRFIMKMIFKI 847
Query: 193 NEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIF-NHIRLLARVFT 251
+ +F ++ + Q+ + P D Q ++F N+I +
Sbjct: 848 DHSKFPEYKCHHQY----ETPLNDVQI-----------------NILFANNIEIKHNCLF 886
Query: 252 TRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSV 311
T +M ++ S QRLEFLGD L ++TSD+L++ FP EG LS R+ LV N + +
Sbjct: 887 TEAMNCSSDPRMSYQRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQARALLVKNDSLAC 946
Query: 312 VCNDIGMPFFANIIN-PKVDLKMKDRADLLEAFLGAMYIDKGMEACEQF 359
+ + + ++ + P + K DL E+ +G + +D+G+E + F
Sbjct: 947 IFQQLNLKDCVDLSSCPGIVFNQKRMGDLFESVVGCLLLDQGIEKTKDF 995
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 74/139 (53%), Gaps = 16/139 (11%)
Query: 241 NHIRLLARVFTTRSMGYTNLTL--------------GSNQRLEFLGDTVLQLITSDYLYN 286
N+ RLL VFT S +N T G NQR+EFLGD+VL+ TS YL+
Sbjct: 708 NNERLLREVFTHPSTKRSNQTPPVNMKIYKNYKFYEGDNQRIEFLGDSVLKFCTSIYLFY 767
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGA 346
FPE EG L+ RS + NN +C+ M + K D+K K +AD++EA GA
Sbjct: 768 KFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRLPQNKDDIK-KPKADVVEALFGA 826
Query: 347 MYIDKGM-EACEQFCKVCF 364
+Y+++GM EA K+ F
Sbjct: 827 VYLERGMYEAFRFIMKMIF 845
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 13/232 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITSDY 283
++L LE G F I LL T +S LG +N+RLEFLGDTVL L+ ++Y
Sbjct: 5 RELSELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVIAEY 64
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L +P++ EG LS + +V+ T + V +G+ F I + + +++ AD
Sbjct: 65 LMVTYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSLLADA 124
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA + A+Y+D G++A F F ++ + D K+ LQ+ C R L+
Sbjct: 125 MEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQDYKTDLQEYC--QRELE---- 178
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+P+Y+V++ GP + + + VAV + + + +G S ++AE AAK AL +
Sbjct: 179 TLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAAKDALSR 230
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L +P EG L+ ++ IV LA +++ +G+ F+L G +L
Sbjct: 53 GDTVLGLVIAEYLMVTYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELT 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E +A+ EA++ A++LD G+D A
Sbjct: 113 QGREKSSLLADAMEAVIAAIYLDSGLDAA 141
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 36 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 95
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 96 NSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 155
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 156 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 208
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 209 AARVGGVSYGTGTGRSKKEAEQQAAESA 236
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 63 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 123 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 182
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 183 TATEGLGVPEYLVTETGPDHEKTFT 207
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 283
+ + L+ G+ F + +LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSS--YVNEHRRRPHEDNERLEFLGDAVLELTVSQY 74
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
L+ FP EG L+ LR+++V + N + F ++ K + R A
Sbjct: 75 LFKKFPHMSEGELTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEELTGGRTRPALLA 132
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ EAF+GA+Y+D+GM+A QF FP++ + D KS+LQ+ DG
Sbjct: 133 DVFEAFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVM-DFKSQLQELV----QRDG- 186
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
+ Y ++E GP +++ + V + L G S ++AE +AA++ALQK +I
Sbjct: 187 -IGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKLKTIGK 245
Query: 458 Q 458
+
Sbjct: 246 E 246
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFKKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D Q ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQ-LQE 180
>gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
gi|90101634|sp|Q4FLS9.1|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
Length = 222
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F+ ++ + T +S N +N+++EFLGD VL LI + L +P+ EG L
Sbjct: 16 FSDQKIFIKSLTHKSFDSIN----NNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKK 71
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINP---KVDLKMKDRADLLEAFLGAMYIDKGMEAC 356
+SLVN + + I + + ++NP K++++ K AD LEA +GA+Y+DKG+
Sbjct: 72 FASLVNKKKCLEIAKKIELEKYILVLNPKNKKIEIEDKIVADCLEALIGAIYLDKGLNFT 131
Query: 357 EQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSR 416
E+F + + ++ Q D K+KLQ+ L + + +PIYK+I + GP +
Sbjct: 132 ERFILNLWSEHITASVITQ--IDAKTKLQEYSLKIFKV------LPIYKLISNTGPRHKP 183
Query: 417 SYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ VAV KN + A G S + AE NAA + LQ
Sbjct: 184 LFKVAVKLKNTKFFTAEGTSKKDAEQNAASLCLQ 217
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + L ++PD +EG L A++V + +AK+I LE ++L + +
Sbjct: 44 GDRVLGLIIAKKLLELYPDEKEGVLDKKFASLVNKKKCLEIAKKIELEKYILVLNPKNKK 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
E+E K +A+C EAL+GA++LD G++ ++
Sbjct: 104 IEIEDK-IVADCLEALIGAIYLDKGLNFTER 133
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 31 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 91 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 151 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 204 AARVGGVSYGTGTGRSKKEAEQQAAESA 231
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 58 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 118 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 177
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 178 TATEGLGVPEYLVTETGPDHEKTFT 202
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+ A +
Sbjct: 95 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLSAASELV 154
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ + +L +P Y V E GP + ++
Sbjct: 155 HRLFDPLIDRSSNLGAGLDW---KTSLQELTAS-ESL-----GVPEYLVTE-TGPDHEKT 204
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T A TG S ++AE AA+ A
Sbjct: 205 FTAAARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ +A+ EA++GA++LD G+ A ++
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLSAASELV 154
>gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
gi|379728091|ref|YP_005320276.1| ribonuclease III [Melissococcus plutonius DAT561]
gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
gi|376318994|dbj|BAL62781.1| ribonuclease III [Melissococcus plutonius DAT561]
Length = 230
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 17/223 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F+ + LL + FT S Y N L L N+R+EFLGD VL+LI S YLY +
Sbjct: 14 GIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERIEFLGDAVLELIISQYLYQKYQNLP 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG L+ +R+++V + + + + + N + + ++R+ DL EAFLGA+Y
Sbjct: 72 EGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLCDLFEAFLGALY 131
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G+E + F FP+++ + E D K+ LQ+ G+ +I Y++++
Sbjct: 132 LDQGIETVKYFISEIIFPKIEEGNFSHEV-DHKTHLQEVLQH-----KGDVNID-YRLVD 184
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP + R + +Y + + + G S + AE +AA+ AL++
Sbjct: 185 EKGPAHDRIFYTEIYADEKLIGRGHGRSKKLAEQDAAERALKE 227
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ + ++ EG L RAAIV+ LA AK + ++L +G +
Sbjct: 51 GDAVLELIISQYLYQKYQNLPEGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
E + + FEA +GAL+LD GI+ S +++ K E F + + H LQE
Sbjct: 111 GGRERSALLCDLFEAFLGALYLDQGIETVKYFISEIIFPKIEEGNFSHEVDHKTH-LQE 168
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F + LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +PE EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +P++ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+ A +
Sbjct: 95 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLSAASELV 154
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ + +L +P Y V E GP + ++
Sbjct: 155 HRLFDPLIDRSSNLGAGLDW---KTSLQELTAS-ESL-----GVPEYLVTE-TGPDHEKT 204
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T A TG S ++AE AA+ A
Sbjct: 205 FTAAARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ +A+ EA++GA++LD G+ A ++
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLSAASELV 154
>gi|146321055|ref|YP_001200766.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
gi|253751930|ref|YP_003025071.1| ribonuclease III [Streptococcus suis SC84]
gi|253753753|ref|YP_003026894.1| ribonuclease III [Streptococcus suis P1/7]
gi|253755369|ref|YP_003028509.1| ribonuclease III [Streptococcus suis BM407]
gi|386578043|ref|YP_006074449.1| Ribonuclease III [Streptococcus suis GZ1]
gi|386582125|ref|YP_006078529.1| dsRNA-specific ribonuclease [Streptococcus suis SS12]
gi|386585902|ref|YP_006082304.1| dsRNA-specific ribonuclease [Streptococcus suis D12]
gi|386588309|ref|YP_006084710.1| dsRNA-specific ribonuclease [Streptococcus suis A7]
gi|403061684|ref|YP_006649900.1| ribonuclease III [Streptococcus suis S735]
gi|145691861|gb|ABP92366.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
gi|251816219|emb|CAZ51846.1| ribonuclease III [Streptococcus suis SC84]
gi|251817833|emb|CAZ55586.1| ribonuclease III [Streptococcus suis BM407]
gi|251819999|emb|CAR46159.1| ribonuclease III [Streptococcus suis P1/7]
gi|292558506|gb|ADE31507.1| Ribonuclease III [Streptococcus suis GZ1]
gi|353734271|gb|AER15281.1| dsRNA-specific ribonuclease [Streptococcus suis SS12]
gi|353738048|gb|AER19056.1| dsRNA-specific ribonuclease [Streptococcus suis D12]
gi|354985470|gb|AER44368.1| dsRNA-specific ribonuclease [Streptococcus suis A7]
gi|402809010|gb|AFR00502.1| ribonuclease III [Streptococcus suis S735]
Length = 228
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ + LL FT S Y N L + N+RLEFLGD VLQL+ S YLY +P+
Sbjct: 13 GIDFSDLNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDRP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG +S LRS+ V + + G F + + ++R D EAFLGA+
Sbjct: 71 EGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG + E+F PRL+ + D K+ LQ+ GE I Y+VI
Sbjct: 131 LDKGEKTVEEFIHKVMIPRLEKGNF-ERVTDYKTALQEILQV-----NGEIAIS-YQVIA 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + +++ V V + + G S + AE AAK A++
Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVE 225
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +PD EG ++ R+ V+ + LA ++ G + F+ G +
Sbjct: 50 GDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV----LYKDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD G ++ V L K N R + Q L
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEIL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 36 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 95
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+++ +
Sbjct: 96 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDSAAELV 155
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 156 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 208
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 209 AARVGGVSYGTGTGRSKKEAEQQAAESA 236
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 63 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 123 GGRDKASILADTLEAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 182
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 183 TATEGLGVPEYLVTETGPDHEKTFT 207
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 11/206 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 77 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 136
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++ +
Sbjct: 137 NSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDKAAELV 196
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L ++G +P Y V E GP + +++T
Sbjct: 197 HRLFDPLIEKSAELGAGLDWKTSLQE----LTAMEG--LGVPEYLVTEE-GPDHEKTFTA 249
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAK 446
A TG S ++AE AA+
Sbjct: 250 AARVGGVSYGTGTGRSKKEAEQQAAE 275
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 104 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGT 163
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDNEV 195
+ +A+ EA++GA++LD G+D A + +F ++ K E+
Sbjct: 164 GGRDKASILADTLEAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAEL 210
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F ++ LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFQNVELLQQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++S+ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681]
gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2]
gi|386040540|ref|YP_005959494.1| ribonuclease III [Paenibacillus polymyxa M1]
gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681]
gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2]
gi|343096578|emb|CCC84787.1| ribonuclease III [Paenibacillus polymyxa M1]
Length = 232
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 32/225 (14%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITS 281
LKQLQ + + FN+ +LL + FT S Y N S N+RLEFLGD VL+L S
Sbjct: 5 LKQLQQKLH---IQFNNRQLLKQAFTHAS--YVNEHRFSQHADNERLEFLGDAVLELTVS 59
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
+ LYN +P EG L+ LR+++V S+V +G+ F ++ K + R
Sbjct: 60 EQLYNQYPNRPEGELTKLRAAIVCE--PSLVKFAVGLEFGQYVLLGKGEELTGGRTRPAL 117
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ--EWNDPKSKLQQCCL--TL 391
AD+ EAF+GA+Y+D+G+EA F + FP++ +LN + +D K++LQ+ +
Sbjct: 118 LADVFEAFVGALYLDQGLEAVRSFLERYIFPQI---VLNGKLQMSDFKTELQELTQHHNM 174
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
L+ YK++E GP + R + VY +ERL TG S
Sbjct: 175 GMLE--------YKIVEERGPAHEREFVAEVYMDSERLGAGTGRS 211
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE--DFMLYAHGSD 150
G+ + S L++ +P+ EG L RAAIV L A +GLE ++L G +
Sbjct: 50 GDAVLELTVSEQLYNQYPNRPEGELTKLRAAIVCEPSLVKFA--VGLEFGQYVLLGKGEE 107
Query: 151 LCHEVELKHAMANCFEALMGALFLDGGIDV 180
L +A+ FEA +GAL+LD G++
Sbjct: 108 LTGGRTRPALLADVFEAFVGALYLDQGLEA 137
>gi|392988132|ref|YP_006486725.1| ribonuclease III [Enterococcus hirae ATCC 9790]
gi|392335552|gb|AFM69834.1| ribonuclease III [Enterococcus hirae ATCC 9790]
Length = 228
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 15/206 (7%)
Query: 238 VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
++F+ + LL + FT S + NL L N+RLEFLGD VL+L+ S+YLY +P+ EG
Sbjct: 15 IVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSEYLYRLYPDIPEGK 74
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDK 351
L+ R+++V + S + G + + + + + R DL EAFLGA+Y+D+
Sbjct: 75 LTKTRAAIVREDSLSKFAKECGFDKYIMLGKGEENSGGRTRPALLCDLFEAFLGALYLDQ 134
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHV 410
G EA F + FP+++ + E D K+KLQ+ D+ I Y++I+
Sbjct: 135 GFEAAHAFLQTVVFPKVKAGAFSHEM-DHKTKLQEVLQK-------SGDVFIEYRLIKEE 186
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNS 436
GP + R + + VY ++ + G S
Sbjct: 187 GPAHERIFWIEVYVDDKLIGTGQGKS 212
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ ++PDI EG L RAAIV+ L+ AK G + +++ G +
Sbjct: 51 GDAVLELMVSEYLYRLYPDIPEGKLTKTRAAIVREDSLSKFAKECGFDKYIMLGKGEENS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD G + A +V++
Sbjct: 111 GGRTRPALLCDLFEAFLGALYLDQGFEAAHAFLQTVVF 148
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 11/206 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 61 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRAHPDLPEGQLAKLRAAVV 120
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++ +
Sbjct: 121 NSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDKAGELV 180
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ L ++G +P Y V E GP + +++T
Sbjct: 181 HRLFDPLIEKSAELGAGLDWKTSLQE----LTAVEG--LGVPEYLVTEE-GPDHEKTFTA 233
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAK 446
A TG S ++AE AA+
Sbjct: 234 AARVGGVSYGTGTGRSKKEAEQQAAE 259
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA +++ + L F+ G +
Sbjct: 88 GDSVLGLVVTDTLYRAHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGT 147
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDNEVRFK---------- 198
+ +A+ EA++GA++LD G+D A + +F ++ K E+
Sbjct: 148 GGRDKASILADTLEAVIGAVYLDQGLDKAGELVHRLFDPLIEKSAELGAGLDWKTSLQEL 207
Query: 199 ---QWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E+ PD ++ +
Sbjct: 208 TAVEGLGVPEYLVTEEGPDHEKTFT 232
>gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
Length = 230
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 130/234 (55%), Gaps = 29/234 (12%)
Query: 231 YLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLYN 286
YL G+ F + LL FT S Y N ++G+ ++LEFLGD VL+L SDYLY
Sbjct: 9 YLFEEYGIKFKNETLLEEAFTHSS--YVNEHPKESVGNYEKLEFLGDAVLELAVSDYLYR 66
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEA 342
HFP +EG L+ LRS++V S + G P N+ + + ++R D+ EA
Sbjct: 67 HFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKTGARERKTLLEDVFEA 126
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP---KSKLQQCCLTLRTLDGGEP 399
F GA+++D+GM+A ++F K+ +P I + E+ D K+ LQ+ L ++G
Sbjct: 127 FNGALFLDQGMDAVQKFLKLTVYP----LIDSGEFTDSRDYKTDLQE----LLQVNGA-- 176
Query: 400 DIPI-YKVIEHVG-PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
I I Y+V+E P+N + VA+ + +++++ +G++ + AE AAK+AL K
Sbjct: 177 -IKIEYQVLEESKLPSN---FKVALLVEGKKISEGSGHNKKAAEQVAAKLALIK 226
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FP + EG L R+ IV+ + + A G + HG +
Sbjct: 52 GDAVLELAVSDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKT 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E K + + FEA GALFLD G+D + +Y
Sbjct: 112 GARERKTLLEDVFEAFNGALFLDQGMDAVQKFLKLTVY 149
>gi|386580100|ref|YP_006076505.1| dsRNA-specific ribonuclease [Streptococcus suis JS14]
gi|319758292|gb|ADV70234.1| dsRNA-specific ribonuclease [Streptococcus suis JS14]
Length = 228
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ + LL FT S Y N L + N+RLEFLGD VLQL+ S YLY +P+
Sbjct: 13 GIDFSDLNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDRP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG +S LRS+ V + + G F + + ++R D EAFLGA+
Sbjct: 71 EGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG + E+F PRL+ + D K+ LQ+ GE I Y+VI
Sbjct: 131 LDKGEKTVEEFIHKVMIPRLEKGNF-ERVTDYKTALQEILQV-----NGEIAIS-YQVIA 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + +++ V V + + G S + AE AAK A++
Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVE 225
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +PD EG ++ R+ V+ + LA ++ G + F+ G +
Sbjct: 50 GDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV----LYKDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD G ++ V L K N R + Q L
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEIL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
Length = 227
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 10/224 (4%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNH 287
+ LE + F++ LL T RS Y G SN+RLEFLGD++L LI++D+LY
Sbjct: 3 EELEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLYRT 62
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--ADLLEAFLG 345
FP+ EG L+ R+ LV T + DI + F + + R A EA LG
Sbjct: 63 FPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQHSGGGQRVLASAFEALLG 122
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D+G++A + F P + N+ + D KS Q+ + DG P Y+
Sbjct: 123 AIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQELA---QAHDG---ITPSYR 176
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
++ GP+++R +T+ V + + G + Q AE AA+ AL
Sbjct: 177 LVNQEGPSHNREFTIEVLLGEQVAGRGQGRNKQSAEQEAARQAL 220
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 20/146 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I++ L+ FPD+ EG L RA +V+ + LA+ A+ I L +F+L G
Sbjct: 47 GDSILALISADFLYRTFPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQ-- 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGID------------VADQVFSSVLYKDNEVRFKQW 200
H + +A+ FEAL+GA++LD G+D +A + + L+KDN+ F++
Sbjct: 105 HSGGGQRVLASAFEALLGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQEL 164
Query: 201 M-----YYPQHPLQEQE-PDGDRQWV 220
P + L QE P +R++
Sbjct: 165 AQAHDGITPSYRLVNQEGPSHNREFT 190
>gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b]
gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b]
Length = 259
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 122/234 (52%), Gaps = 20/234 (8%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITS 281
+L+ + LE V F++ LL + FT S Y N G N+RLEFLGD VL+L S
Sbjct: 27 ILELFKSLEERLDVQFSNHDLLMQAFTHSS--YVNEQRGLRKDNERLEFLGDAVLELTVS 84
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
+LY +PE EG L+ LR+++V S+V F I+ K + R
Sbjct: 85 RFLYETYPERSEGELTKLRAAIVCE--PSLVNFAEAFAFSDFILLGKGEELTGGRKRPAL 142
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
AD+ E+++GA+Y+D+G+EA E+F FP++ + +E D KS+LQ+ +
Sbjct: 143 LADVFESYIGALYLDQGIEAVERFLAEAVFPKVLAGVF-EEQTDFKSQLQESV----QRE 197
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
G P Y++IE GP +SR + ++ + + G S ++AE AAK AL
Sbjct: 198 GLGP--VSYEIIEERGPAHSREFVAHARLSDDIVGEGVGRSKKEAEQLAAKEAL 249
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P+ EG L RAAIV L + A+ DF+L G +L
Sbjct: 75 GDAVLELTVSRFLYETYPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLGKGEELT 134
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-----VADQVFSSVL 189
+ +A+ FE+ +GAL+LD GI+ +A+ VF VL
Sbjct: 135 GGRKRPALLADVFESYIGALYLDQGIEAVERFLAEAVFPKVL 176
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 38 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 97
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 98 NSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 157
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ LT G +P Y V E GP + +++T
Sbjct: 158 HRLFDPLIEKSSNLGAGLDWKTSLQE--LTASEGLG----VPEYLVTE-TGPDHEKTFTA 210
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 211 AARVGGVSYGTGTGRSKKEAEQQAAESA 238
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 65 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 125 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 184
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 185 TASEGLGVPEYLVTETGPDHEKTFT 209
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 95 NSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 154
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ LT G +P Y V E GP + +++T
Sbjct: 155 HRLFDPLIEKSSNLGAGLDWKTSLQE--LTASEGLG----VPEYLVTE-TGPDHEKTFTA 207
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 208 AARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 181
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 182 TASEGLGVPEYLVTETGPDHEKTFT 206
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F ++ LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFQNVELLQQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ +F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVKFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FE+ +GAL+LD GID + V++
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGIDKVVKFLERVIF 146
>gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54]
gi|81642476|sp|Q6ANV0.1|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54]
Length = 241
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 11/221 (4%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
F +RLL + S + G +N+RLEF+GD VL L+ + LY FPE EG L+
Sbjct: 27 FIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNALYRRFPEMREGELTR 86
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMYIDKGME 354
LR++LVN + + I + +F + + + K ++++ +L EA +GA++ D G +
Sbjct: 87 LRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCAYEAVIGAIFQDGGYD 146
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
A + F P + + D KS+LQ+ L + P Y++ GP++
Sbjct: 147 AVAALVERFFLPVIDRRKEDLLLADAKSRLQEI------LQEKHNEGPSYRLDNEEGPSH 200
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+ +T++V F++E L S ++AE A +A++K S+
Sbjct: 201 KKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKKIESM 241
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + L+ FP++ EG L RAA+V HLA +A++I L F+ G D
Sbjct: 60 GDAVLDLVVGNALYRRFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNS 119
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
E ++ +EA++GA+F DGG D
Sbjct: 120 KGREKSSILSCAYEAVIGAIFQDGGYDA 147
>gi|417092728|ref|ZP_11957344.1| dsRNA-specific ribonuclease [Streptococcus suis R61]
gi|353532407|gb|EHC02079.1| dsRNA-specific ribonuclease [Streptococcus suis R61]
Length = 228
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ + LL FT S Y N L + N+RLEFLGD VLQL+ S YLY +P+
Sbjct: 13 GIDFSDLNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDSP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG +S LRS+ V + + G F + + ++R D EAFLGA+
Sbjct: 71 EGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG + E+F PRL+ + D K+ LQ+ GE I Y+VI
Sbjct: 131 LDKGEKTVEEFIHKVMIPRLEKGNF-ERVTDYKTALQEILQV-----NGEIAIS-YQVIA 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + +++ V V + + G S + AE AAK A++
Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVE 225
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +PD EG ++ R+ V+ + LA ++ G + F+ G +
Sbjct: 50 GDAVLQLMISKYLYQKYPDSPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV----LYKDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD G ++ V L K N R + Q L
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEIL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 13/217 (5%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F LLA+ T RS LGSN+RLEF+GD VL L+ +++L FP EG L
Sbjct: 13 FARPDLLAQALTHRSA-VGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHEREGGLGPR 71
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEA 355
+ LV+ ++ + + G+ ++ + +++R AD LEA +GA+Y+D G+E
Sbjct: 72 LAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYLDGGLEP 131
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNS 415
F + F PR+ + DPK+ LQ+ L P +P Y+++E GP+++
Sbjct: 132 ARLFIRRIFAPRIDGQP-SAPPKDPKTALQEYALAR------GPVLPAYELVERTGPSHA 184
Query: 416 RSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+ + V R A+ + ++AE NAA+ L++
Sbjct: 185 PRFRIRVTVAG-RAAEGLAGTKREAEQNAARDLLEQL 220
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L FP EGGL A +V Q LA +A+ G+ + + G +A+
Sbjct: 56 LIERFPHEREGGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADA 115
Query: 165 FEALMGALFLDGGIDVA 181
EAL+GAL+LDGG++ A
Sbjct: 116 LEALIGALYLDGGLEPA 132
>gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
6192]
gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
6192]
Length = 194
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 16/194 (8%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF 321
+G N+RLEFLGD VL L +DYLY FPE EG L+ ++S +V+ T + I + F
Sbjct: 1 MGDNERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNF 60
Query: 322 ANIINPKVDLKMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ 375
I+ K + R AD +EA +GA ++D G EA F P ++ + N+
Sbjct: 61 --ILISKGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENR 118
Query: 376 EWNDPKSKLQQCC-LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG 434
D K+ LQ+ +T P Y+V+E +GP ++R++ + V ++++ G
Sbjct: 119 HKKDYKTLLQEYVQKNFKTY-------PRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEG 171
Query: 435 NSIQQAEMNAAKVA 448
+ ++AE +AA +A
Sbjct: 172 KNKKEAEQSAASIA 185
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 104 HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 163
+L+ FP+ +EG LA ++ +V L +A+RI +++F+L + G + K +A+
Sbjct: 22 YLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFILISKGEEYAGGRTKKALLAD 81
Query: 164 CFEALMGALFLDGGIDVA 181
EA++GA FLD G + A
Sbjct: 82 AMEAIIGAYFLDAGFEAA 99
>gi|357410945|ref|YP_004922681.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
Length = 274
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 35 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+ A +
Sbjct: 95 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLGAASELV 154
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ + +L +P Y V E GP + ++
Sbjct: 155 HRLFDPLIDRSSNLGAGLDW---KTSLQELTAS-ESL-----GVPEYLVTE-TGPDHEKT 204
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T A TG S ++AE AA+ A
Sbjct: 205 FTAAARVGGVSYGTGTGRSKKEAEQQAAESA 235
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 62 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ +A+ EA++GA++LD G+ A ++
Sbjct: 122 GGRDKASILADTLEAVIGAVYLDQGLGAASEL 153
>gi|392330868|ref|ZP_10275483.1| ribonuclease III [Streptococcus canis FSL Z3-227]
gi|391418547|gb|EIQ81359.1| ribonuclease III [Streptococcus canis FSL Z3-227]
Length = 230
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 24/242 (9%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L +S + F LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEELLAASFNIYFEDHTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++ +F K P++ ++ N K K + C L+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGVDEVRRFLKQVMIPQV------EKGNFEKVKDYKTC--LQEL 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+V+ GP +++ + VAV L+K G S + AE +AAK AL +
Sbjct: 169 LQAKGDVVIDYQVVSEKGPAHAKQFEVAVVVNEAILSKGLGKSKKIAEQDAAKNALTQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G+D + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVDEVRRFLKQVM 146
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 13/217 (5%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F LLA+ T RS LGSN+RLEF+GD VL L+ +++L FP EG L
Sbjct: 13 FARPDLLAQALTHRSA-VGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHEREGGLGPR 71
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEA 355
+ LV+ ++ + + G+ ++ + +++R AD LEA +GA+Y+D G+E
Sbjct: 72 LAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYLDGGLEP 131
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNS 415
F + F PR+ + DPK+ LQ+ L P +P Y+++E GP+++
Sbjct: 132 ARLFIRRIFAPRIDGQP-SAPPKDPKTALQEYALAR------GPVLPAYELVERTGPSHA 184
Query: 416 RSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+ + V R A+ + ++AE NAA+ L++
Sbjct: 185 PRFRIRVTVAG-RTAEGLAGTKREAEQNAARDLLEQL 220
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L FP EGGL A +V Q LA +A+ G+ + + G +A+
Sbjct: 56 LIERFPHEREGGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADA 115
Query: 165 FEALMGALFLDGGIDVA 181
EAL+GAL+LDGG++ A
Sbjct: 116 LEALIGALYLDGGLEPA 132
>gi|338730556|ref|YP_004659948.1| RNAse III [Thermotoga thermarum DSM 5069]
gi|335364907|gb|AEH50852.1| RNAse III [Thermotoga thermarum DSM 5069]
Length = 241
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 10/195 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
SN+RLEFLGD+V++++ SDYLY +F E EG+++ +++++ + + V DI + F
Sbjct: 49 SNERLEFLGDSVIEMLLSDYLYKNFEEFSEGNMAKIKAAVASEEALARVARDINLGEFLF 108
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + +DR AD LEA +GA+Y+D G E ++ F ++ + D
Sbjct: 109 LGRGEEITGGRDRDSILADALEAVIGALYLDGGFEVVKRVMLPHFESYIKQVAEGKIILD 168
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
K+ LQ+ +P Y +++ GP++ R +TV V K + LA G SI++
Sbjct: 169 HKTALQELT------QAKYKALPRYVLVKEEGPSHMRKFTVEVRLKRKVLAVGEGTSIKE 222
Query: 440 AEMNAAKVALQKCPS 454
AE AAK+AL+K
Sbjct: 223 AEKVAAKLALEKLKK 237
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + S +L+ F + EG +A +AA+ + LA +A+ I L +F+ G ++
Sbjct: 57 GDSVIEMLLSDYLYKNFEEFSEGNMAKIKAAVASEEALARVARDINLGEFLFLGRGEEIT 116
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ +A+ EA++GAL+LDGG +V +V
Sbjct: 117 GGRDRDSILADALEAVIGALYLDGGFEVVKRVM 149
>gi|421766726|ref|ZP_16203495.1| Ribonuclease III [Lactococcus garvieae DCC43]
gi|407624752|gb|EKF51485.1| Ribonuclease III [Lactococcus garvieae DCC43]
Length = 231
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 115/228 (50%), Gaps = 29/228 (12%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F LL FT S YTN + +N+RLEFLGD L LI S+YLY +P+
Sbjct: 13 GIKFADEELLKIAFTHSS--YTNEERLPKVANNERLEFLGDVALSLIISEYLYRTYPDKL 70
Query: 293 EGHLSLLRSSLVNNRTQSVV-----CNDIGMPFFANIINPKVDLKMKDR--ADLLEAFLG 345
EG LS +RSS+V RT+S+ C + G K + +D +L EAFLG
Sbjct: 71 EGELSKMRSSIV--RTESLANFSRQC-EFGRFLLLGNGEEKTGGRNRDTNLENLFEAFLG 127
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQ---YFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
A+++D GME F P ++ YF + D K+ LQ+ +DG +
Sbjct: 128 ALFLDSGMEEVRHFIDRVVIPHVKADDYF----KVIDYKTNLQEVL----QMDG--ETLI 177
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
YK++E GP ++R + AVY + L + G S + AE AA+ A++
Sbjct: 178 EYKILEETGPAHAREFVAAVYNNGKELGRGHGKSKKVAEQKAAENAIK 225
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
I S +L+ +PD EG L+ R++IV+ + LA+ +++ F+L +G +
Sbjct: 56 LIISEYLYRTYPDKLEGELSKMRSSIVRTESLANFSRQCEFGRFLLLGNGEEKTGGRNRD 115
Query: 159 HAMANCFEALMGALFLDGGID--------------VADQVFSSVLYKDN 193
+ N FEA +GALFLD G++ AD F + YK N
Sbjct: 116 TNLENLFEAFLGALFLDSGMEEVRHFIDRVVIPHVKADDYFKVIDYKTN 164
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Query: 248 RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307
R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++VN+R
Sbjct: 2 RALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSR 61
Query: 308 TQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVC 363
+ V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 62 ALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAAGELVHRL 121
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
F P ++ D K+ LQ+ T +P Y V E GP + +++T A
Sbjct: 122 FDPLIEKSSSLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTAAAR 174
Query: 424 FKNERLAKATGNSIQQAEMNAAKVA 448
TG S ++AE AA+ A
Sbjct: 175 VGGVSYGTGTGRSKKEAEQQAAESA 199
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ + PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 26 GDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGT 85
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 86 GGRDKASILADTLEAVIGAVYLDQGLDAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQEL 145
Query: 196 RFKQWMYYPQHPLQEQEPD 214
+ + P++ + E PD
Sbjct: 146 TATEGLGVPEYLVTETGPD 164
>gi|254514114|ref|ZP_05126175.1| ribonuclease III [gamma proteobacterium NOR5-3]
gi|219676357|gb|EED32722.1| ribonuclease III [gamma proteobacterium NOR5-3]
Length = 224
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 16/212 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
Q+LE G + LL + + RS+G N N+RLEFLGD+VL + S+ LY FP
Sbjct: 5 QWLERQFGCRLQNGSLLTQALSHRSVGSRN-----NERLEFLGDSVLGFVVSEELYRRFP 59
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCN--DIG--MPFFANIINPKVDLKMKDRADLLEAFLG 345
+ EG LS LR SLV + V D+G + A I+ + AD LEA LG
Sbjct: 60 DADEGQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHGGGRRRDSILADTLEALLG 119
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+ +D G+EAC F R L Q DPK++LQ+ L G +P Y
Sbjct: 120 AIVLDLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQE------FLQGRGRQLPDYV 173
Query: 406 VIEHVGPTNSRSYTVAVYFKN-ERLAKATGNS 436
+ + G +++ +TVA + + +A+ G S
Sbjct: 174 LCDAAGEDHAKIFTVACELSDGDEVAQGVGES 205
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ S L+ FPD +EG L+ R ++V+ LA +A+ + L D + G
Sbjct: 42 GDSVLGFVVSEELYRRFPDADEGQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHG 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD-NEVRFKQWMYYPQHPLQE 210
+A+ EAL+GA+ LD GI+ S V + ++ +Q P+ LQE
Sbjct: 102 GGRRRDSILADTLEALLGAIVLDLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQE 160
>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
Azul-94]
gi|189043299|sp|A0RRM7.1|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
Length = 223
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 14/229 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+ +L LE G F + LL T +SM + +N+RLEFLGD VL LI +YL+
Sbjct: 1 MDKLNRLEEHLGYKFKNKTLLKEALTHKSMKSS----VNNERLEFLGDAVLDLIVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
F + EG+LS LR++LVN ++ + + + I + F + + + +++ +D LE
Sbjct: 57 FKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y++ G+EA ++ + L D K+ LQ+ +
Sbjct: 117 ALMGAIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGV------T 170
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P Y+++ GP + +S+ +AV+ ++ LA+A GNS ++AE +AA LQ
Sbjct: 171 PRYELVSSSGPDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQ 219
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I +LF F D +EG L+ RAA+V + A ++ +I L DF+ + D
Sbjct: 43 GDAVLDLIVGEYLFFKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ +++ EALMGA++L+ G++ ++F ++L
Sbjct: 103 NGRNKPSLVSDALEALMGAIYLESGLEAVKKIFINLL 139
>gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
Length = 230
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 24/237 (10%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L+ + ++FN LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLKALLKETFNIVFNDQDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P EG LS LRS +V R +S+ F I K + K R
Sbjct: 59 SEYLFKKYPHKPEGDLSKLRSMIV--REESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E F +++ ++ D K+ LQ+
Sbjct: 117 ILGDLFEAFLGALLLDKGIEEVRLFLNQVMISQVEKGNF-EKVKDYKTGLQEVL------ 169
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ D+ I Y+V++ GP +++ + VA+ E +++ G S + AE NAAK AL+
Sbjct: 170 -QAKGDVQIDYQVVKESGPAHAKQFEVAILVNQEVISRGIGKSKKIAEQNAAKKALE 225
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L+ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVLYKDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GI+ +QV S + K N + K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGIEEVRLFLNQVMISQVEKGNFEKVKDYKTGLQEVL 169
Query: 209 QEQEPDGDRQ 218
Q + GD Q
Sbjct: 170 QAK---GDVQ 176
>gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114]
gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114]
Length = 225
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 117/212 (55%), Gaps = 13/212 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
+ FN+ L+ + FT +S N+ +N+RLEFLGD VL L+ + YL +++P+ EG L
Sbjct: 15 IKFNNKSLIEQAFTHKSKS-VNIN-NNNERLEFLGDRVLGLVIASYLNDNYPKDSEGVLD 72
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---ADLLEAFLGAMYIDKGME 354
+SLVN T S + + + + F ++ + K ++ DL E+ +GA+++DKG E
Sbjct: 73 KKLASLVNKETCSKIISSLEIDRFLSLSEAQKQNKAGNKKILGDLCESIIGAVFMDKGFE 132
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
++F + L+ Q + DPK+KLQ+ L L +P+YK I + GP++
Sbjct: 133 QTKKFILKIWKENLKN--TTQVFIDPKTKLQEYSLKLY------KKLPVYKYISNSGPSH 184
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
++ V+V + + ATG S + AE NAAK
Sbjct: 185 KPNFRVSVSIEQSKSFVATGTSKKNAETNAAK 216
>gi|373456823|ref|ZP_09548590.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
gi|371718487|gb|EHO40258.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
Length = 264
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 121/218 (55%), Gaps = 20/218 (9%)
Query: 245 LLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLR 300
LL + F RS Y N+T L SN+RLEFLGD VL LI +++L+++FP +EG LS R
Sbjct: 38 LLLKAFKHRS--YLNMTHESALESNERLEFLGDAVLDLIIAEHLFHNFPNKNEGELSKKR 95
Query: 301 SSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYIDKGME 354
S LV+ + + + +IG+ + ++ K + K R A+L E+ LGA+Y+D G+
Sbjct: 96 SVLVSRQVLAQITEEIGLGEY--LLLDKGEEKTGGRKRLNNLANLFESVLGAIYLDGGLT 153
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
A F + + + + +++ KS+L + ++ G P+Y+++ GP +
Sbjct: 154 AARNFVNHFILRKREDLLKVKRYHNYKSELLEKA---QSKGWGN---PVYQIVHESGPDH 207
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
++ + V V N LAK G+S ++AE AA+ AL+K
Sbjct: 208 NKQFVVRVNVNNRWLAKGVGSSKKKAEQLAARNALKKL 245
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + HLFH FP+ EG L+ R+ +V Q LA + + IGL +++L G +
Sbjct: 67 GDAVLDLIIAEHLFHNFPNKNEGELSKKRSVLVSRQVLAQITEEIGLGEYLLLDKGEEKT 126
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE--VRFKQWMYYPQHPLQE 210
+ + +AN FE+++GA++LDGG+ A + + + E ++ K++ Y L++
Sbjct: 127 GGRKRLNNLANLFESVLGAIYLDGGLTAARNFVNHFILRKREDLLKVKRYHNYKSELLEK 186
Query: 211 QEPDG 215
+ G
Sbjct: 187 AQSKG 191
>gi|312868336|ref|ZP_07728536.1| ribonuclease III [Streptococcus parasanguinis F0405]
gi|311096081|gb|EFQ54325.1| ribonuclease III [Streptococcus parasanguinis F0405]
Length = 233
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY P E
Sbjct: 14 IVFSDSSLLDTAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLVISEYLYKEHPNRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS RS +V + + D + + + +DR DL EAFLGA+ +
Sbjct: 72 GDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
D+G+EA ++F P+++ +Q D K++LQ+ L + G D+ I Y+V+
Sbjct: 132 DQGVEAVKRFIYQVMIPKVETGQFSQVI-DYKTRLQE----LLQVHG---DVEIQYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP +++ + V V+ + + G S + AE AA+ A++
Sbjct: 184 EAGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ P+ EG L+ +R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYY 203
+ + + FEA +GAL LD G++ + V+ E +F Q + Y
Sbjct: 110 GGRDRDTILGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDY 161
>gi|406978407|gb|EKE00379.1| Ribonuclease III [uncultured bacterium]
Length = 230
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 13/208 (6%)
Query: 248 RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307
R F + YTN SN+RLEFLGD VLQL++S++LY FP H EG L+ R++ V
Sbjct: 31 RSFLNEHLDYTN---SSNERLEFLGDAVLQLLSSEFLYKKFPNHPEGDLTNFRAATVCTG 87
Query: 308 TQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVC 363
+ + + + N + + R A+ EA LGA++I+KG++ C +F +
Sbjct: 88 SLAKEAKRLEYGRLLLLSNGEEATGGRQREYILANTFEAVLGALFIEKGIDFCREFLERE 147
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
+++ + ++ + D KSK Q+ + P Y+V++ G + +++ V VY
Sbjct: 148 LLYKVEEIVKSEGYKDSKSKFQETAQEKFGV------TPSYEVLDSWGADHDKTFKVGVY 201
Query: 424 FKNERLAKATGNSIQQAEMNAAKVALQK 451
+ + + G S Q+AE AA+ AL K
Sbjct: 202 VDKKLMGEGEGRSKQKAEQAAAENALDK 229
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q ++S L+ FP+ EG L +RAA V LA AKR+ +L ++G +
Sbjct: 52 GDAVLQLLSSEFLYKKFPNHPEGDLTNFRAATVCTGSLAKEAKRLEYGRLLLLSNGEEAT 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV------------ADQVFSSVLYKDNEVRFKQ 199
+ ++ +AN FEA++GALF++ GID +++ S YKD++ +F++
Sbjct: 112 GGRQREYILANTFEAVLGALFIEKGIDFCREFLERELLYKVEEIVKSEGYKDSKSKFQE 170
>gi|387927066|ref|ZP_10129745.1| ribonuclease III [Bacillus methanolicus PB1]
gi|387589210|gb|EIJ81530.1| ribonuclease III [Bacillus methanolicus PB1]
Length = 253
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 21/238 (8%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 282
KQ + + G++F +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 18 KQFKEFQERIGIVFGDEKLLKQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTVSQ 75
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ 336
YL+ +P EG L+ LR+++V + N+ + F I+ K + R
Sbjct: 76 YLFKKYPMMSEGELTKLRAAVVCEPSLVSFANE--LSFGELILLGKGEEMTGGRARPALL 133
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
AD+ EAF+GA+Y+DKG+E +F ++ FP++ + D KS+LQ+ DG
Sbjct: 134 ADVFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVM-DYKSQLQELV----QRDG 188
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
Y++++ GP ++R + V L G S ++AE +AA++AL+K +
Sbjct: 189 A--GTIEYRILQEKGPAHNREFVSRVSLNKVELGTGIGRSKKEAEQHAAQMALEKLKA 244
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 21/163 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P + EG L RAA+V L A + + +L G ++
Sbjct: 65 GDAVLELTVSQYLFKKYPMMSEGELTKLRAAVVCEPSLVSFANELSFGELILLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQH----- 206
+A+ FEA +GAL+LD GI+ + V++ K N F M Y
Sbjct: 125 GGRARPALLADVFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVMDYKSQLQELV 184
Query: 207 -----------PLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV 238
LQE+ P +R++V + L K +E +G+
Sbjct: 185 QRDGAGTIEYRILQEKGPAHNREFVSRVSLNK----VELGTGI 223
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Query: 248 RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307
R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++VN+R
Sbjct: 2 RALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSR 61
Query: 308 TQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVC 363
+ V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 62 ALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAAAELVHRL 121
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
F P ++ D K+ LQ+ T +P Y V E GP + +++T A
Sbjct: 122 FDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTAAAR 174
Query: 424 FKNERLAKATGNSIQQAEMNAAKVA 448
TG S ++AE AA+ A
Sbjct: 175 VGGVEYGTGTGRSKKEAEQQAAESA 199
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ + PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 26 GDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 85
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 86 GGRDKASILADTLEAVIGAVYLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 145
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGV 238
+ + P++ + E PD ++ + + ++ +EY +G
Sbjct: 146 TATEGLGVPEYLVTETGPDHEKTFTAAA----RVGGVEYGTGT 184
>gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126]
gi|340398604|ref|YP_004727629.1| ribonuclease 3 [Streptococcus salivarius CCHSS3]
gi|387784355|ref|YP_006070438.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Streptococcus
salivarius JIM8777]
gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126]
gi|338742597|emb|CCB93102.1| ribonuclease 3 (Ribonuclease III) (RNAse III) [Streptococcus
salivarius CCHSS3]
gi|338745237|emb|CCB95603.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Streptococcus
salivarius JIM8777]
Length = 229
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 17/215 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
+P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 64 KRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G DI
Sbjct: 124 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDR-VTDYKTALQE-----RLQVNGTVDI 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
Y VI+ GP +++ +T+ V + L+ G S
Sbjct: 178 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L+ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 50 GDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 110 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146
>gi|456012685|gb|EMF46373.1| Ribonuclease III [Planococcus halocryophilus Or1]
Length = 251
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 21/225 (9%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ FN LL + FT S Y N N+RLEFLGD VL+L S YLY +PE E
Sbjct: 32 ITFNKPTLLYQAFTHSS--YVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYMKYPEMSE 89
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G L+ LR+++V + + N++G F I+ K + R AD+ E+++GA+
Sbjct: 90 GELTKLRAAIVCEPSLVLFANELG--FGKYILLGKGEELTGGRTRPALLADVFESYIGAL 147
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D+G+E F ++ FP++ + D KS+LQ+ T Y++I
Sbjct: 148 YLDQGLEPVVAFLEMVLFPKVDIGAFSHVM-DYKSQLQELVQQKNT------GTLSYEII 200
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+ +GP +SR + V + L G S ++AE AA++A++K
Sbjct: 201 DEIGPAHSRLFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRKL 245
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P++ EG L RAAIV L A +G ++L G +L
Sbjct: 68 GDAVLELSVSHYLYMKYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+A+ FE+ +GAL+LD G++ VL+ ++ F M Y LQE
Sbjct: 128 GGRTRPALLADVFESYIGALYLDQGLEPVVAFLEMVLFPKVDIGAFSHVMDYKSQ-LQE 185
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F ++ LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFKNVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>gi|421452638|ref|ZP_15901999.1| Ribonuclease III [Streptococcus salivarius K12]
gi|400183069|gb|EJO17331.1| Ribonuclease III [Streptococcus salivarius K12]
Length = 247
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 221 EQSPLLKQL-QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTV 275
++ + QL Q LE G++F+ LL FT S Y N L + N+RLEFLGD
Sbjct: 14 KKGSFMNQLEQKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAA 71
Query: 276 LQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD 335
LQL+ S YLY +P EG +S +RS++V + + G + + + ++
Sbjct: 72 LQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRE 131
Query: 336 RA----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL 391
RA DL EAFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+
Sbjct: 132 RATILGDLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDR-VTDYKTALQE----- 185
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
R G DI Y VI+ GP +++ +T+ V + L+ G S
Sbjct: 186 RLQVNGTVDI-TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 229
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L+ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 68 GDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 128 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 164
>gi|387761093|ref|YP_006068070.1| ribonuclease III [Streptococcus salivarius 57.I]
gi|339291860|gb|AEJ53207.1| ribonuclease III [Streptococcus salivarius 57.I]
Length = 237
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 221 EQSPLLKQL-QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTV 275
++ + QL Q LE G++F+ LL FT S Y N L + N+RLEFLGD
Sbjct: 4 KKGSFMNQLEQKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAA 61
Query: 276 LQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD 335
LQL+ S YLY +P EG +S +RS++V + + G + + + ++
Sbjct: 62 LQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRE 121
Query: 336 RA----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL 391
RA DL EAFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+
Sbjct: 122 RATILGDLWEAFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDR-VTDYKTALQE----- 175
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
R G DI Y VI+ GP +++ +T+ V + L+ G S
Sbjct: 176 RLQVNGTVDI-TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 219
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L+ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 58 GDAALQLVISVYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 118 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154
>gi|195054647|ref|XP_001994236.1| GH23571 [Drosophila grimshawi]
gi|193896106|gb|EDV94972.1| GH23571 [Drosophila grimshawi]
Length = 233
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 66/85 (77%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
MA+ N+LLLSQI+G+V+ +LSLCI++P++++ +F GHCLLF+TG W+ +DG F V WA
Sbjct: 1 MALANVLLLSQISGHVLLLILSLCIVLPLSINLSQFCGHCLLFTTGKWRVSDGMFDVHWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +C + + GV LF IS++QIYR
Sbjct: 61 SDGFCTFPLITGVFLFTISLVQIYR 85
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGT 538
FGAW +F+ VG+GV ALLKL HQ++N++VSMY ERQ L+++ + P G T
Sbjct: 167 FGAWGAFAISVGIGVIALLKLIHNHQVRNIKVSMYLERQRLVNQQQFDGRSTPPLASGAT 226
Query: 539 SEGTSAQN 546
S+ S QN
Sbjct: 227 SD--SDQN 232
>gi|408789946|ref|ZP_11201583.1| Ribonuclease III [Lactobacillus florum 2F]
gi|408520787|gb|EKK20817.1| Ribonuclease III [Lactobacillus florum 2F]
Length = 236
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 13/206 (6%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G+ FN +LL FT S + + L +RLEFLGD V QL+ SDY++ +PE +G
Sbjct: 14 GIKFNDEKLLDEAFTQASYVNEHPDQGLKFYERLEFLGDAVYQLVVSDYIFERYPEMPQG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYID 350
L+ LR+++VN + S + + + + ++R D+ E+F+GA+Y+D
Sbjct: 74 RLTRLRAAMVNRHSFSRFARECNFEKYIRLGKGEEKAGARNRDSLLCDIFESFIGAVYLD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G+ + FC++ FP+L + E+ D K++LQ+ ++G P Y++++
Sbjct: 134 QGLATVQHFCQLVIFPKLDEGWFD-EFFDHKTELQEAI----QING--PVAIDYQLLDED 186
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNS 436
GP N R + V V E L G+S
Sbjct: 187 GPDNDRQFKVVVVINQESLGTGEGHS 212
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S ++F +P++ +G L RAA+V + A+ E ++ G +
Sbjct: 51 GDAVYQLVVSDYIFERYPEMPQGRLTRLRAAMVNRHSFSRFARECNFEKYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+ + FE+ +GA++LD G+
Sbjct: 111 GARNRDSLLCDIFESFIGAVYLDQGL 136
>gi|375308186|ref|ZP_09773473.1| ribonuclease III [Paenibacillus sp. Aloe-11]
gi|390454105|ref|ZP_10239633.1| ribonuclease III [Paenibacillus peoriae KCTC 3763]
gi|375080517|gb|EHS58738.1| ribonuclease III [Paenibacillus sp. Aloe-11]
Length = 232
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 32/225 (14%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITS 281
LKQLQ + + FN+ +LL + FT S Y N S N+RLEFLGD VL+L S
Sbjct: 5 LKQLQQKLH---IQFNNRQLLKQAFTHAS--YVNEHRFSQHADNERLEFLGDAVLELTVS 59
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
+ LYN +P EG L+ LR+++V S+V +G+ F ++ K + R
Sbjct: 60 EQLYNQYPNRPEGELTKLRAAIVCE--PSLVKFAVGLEFGQYVLLGKGEELTGGRTRPAL 117
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ--EWNDPKSKLQQCCL--TL 391
AD+ EAF+GA+Y+D+G+EA F + FP++ +LN + +D K++LQ+ +
Sbjct: 118 LADVFEAFVGALYLDQGLEAVRSFLERYIFPQI---VLNGKLQMSDFKTELQELTQHHNM 174
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
L+ Y+++E GP + R + VY +ERL TG S
Sbjct: 175 GMLE--------YRIVEERGPAHEREFVAEVYMDSERLGAGTGRS 211
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE--DFMLYAHGSD 150
G+ + S L++ +P+ EG L RAAIV L A +GLE ++L G +
Sbjct: 50 GDAVLELTVSEQLYNQYPNRPEGELTKLRAAIVCEPSLVKFA--VGLEFGQYVLLGKGEE 107
Query: 151 LCHEVELKHAMANCFEALMGALFLDGGIDV 180
L +A+ FEA +GAL+LD G++
Sbjct: 108 LTGGRTRPALLADVFEAFVGALYLDQGLEA 137
>gi|321473002|gb|EFX83970.1| hypothetical protein DAPPUDRAFT_223051 [Daphnia pulex]
Length = 222
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 5 NILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWASQAY 64
N+LL+ QI Y++A +L+LCI +P+ +HQ +FKGHCLLFS G W+E DGQF++TWA AY
Sbjct: 2 NVLLVIQITVYILALVLALCISVPVIIHQKDFKGHCLLFSRGTWRETDGQFVITWAPNAY 61
Query: 65 CNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITS 102
C + I GV+ IQI+R+ ++++G + S F+++
Sbjct: 62 CVFVILSGVISLTACCIQIHRLGHFLYRGLD-SSFLSA 98
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 46/58 (79%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVG 536
FGAWAS++CWVGL VCA+LKLCRYHQ +N+RVSM +ER+ L+++ L + + + +G
Sbjct: 165 FGAWASWACWVGLAVCAVLKLCRYHQRENIRVSMAKERRRLLTDGLPPRSSSDEAMLG 222
>gi|414155946|ref|ZP_11412255.1| ribonuclease 3 [Streptococcus sp. F0442]
gi|410872155|gb|EKS20099.1| ribonuclease 3 [Streptococcus sp. F0442]
Length = 233
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY P E
Sbjct: 14 IVFSDSSLLDTAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLVISEYLYKEHPNRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS RS +V + + D + + + +DR DL EAFLGA+ +
Sbjct: 72 GDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
D+G+EA ++F P+++ +Q D K++LQ+ D+ I Y+V+
Sbjct: 132 DQGVEAVKRFVYQVMIPKVETGQFSQVI-DYKTRLQELLQV-------HGDVEIQYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP +++ + V V+ + L G S + AE AA+ A++
Sbjct: 184 ESGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAARNAVE 225
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ P+ EG L+ +R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + + FEA +GAL LD G++ + V+ ++ K +F Q + Y LQE
Sbjct: 110 GGRDRDTILGDLFEAFLGALLLDQGVEAVKRFVYQVMIPKVETGQFSQVIDYKTR-LQE 167
>gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174463|ref|YP_004651273.1| ribonuclease 3 [Parachlamydia acanthamoebae UV-7]
gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478821|emb|CCB85419.1| ribonuclease 3 [Parachlamydia acanthamoebae UV-7]
Length = 236
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 18/235 (7%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS-NQRLEFLGDTVLQLITSDY 283
L + + +E G F LLA F RS N + N+RLEFLGD+VL L+ +DY
Sbjct: 7 LAQNISNIELRLGYKFQDRDLLALAFVHRSFINENREIHEHNERLEFLGDSVLGLLIADY 66
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------- 336
LY + P EG LS L+S LV + + + + F + + +M D
Sbjct: 67 LYRYLPSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGE---RMNDGRGRESIL 123
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
ADLLEA +GA+Y+D G+E+ + F F ++ IL + K+ LQ C
Sbjct: 124 ADLLEAIIGAVYLDGGLESAKAFLFKNFSTEIEA-ILKTPVRNWKALLQDYCQKKYQT-- 180
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y VI+ GP +S+++ ++V+ +E + K G S ++A+ AA+ AL K
Sbjct: 181 ----TPSYHVIDEKGPDHSKTFKISVFLNDEEVGKGEGGSKKEAQQKAAEDALSK 231
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + +L+ P EG L+ ++ +V+ ++ LE F+L G +
Sbjct: 55 GDSVLGLLIADYLYRYLPSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGERMN 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ EA++GA++LDGG++ A
Sbjct: 115 DGRGRESILADLLEAIIGAVYLDGGLESA 143
>gi|417937669|ref|ZP_12580969.1| ribonuclease III [Streptococcus infantis SK970]
gi|343391933|gb|EGV04506.1| ribonuclease III [Streptococcus infantis SK970]
Length = 232
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F+ +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELETVLEQRFGLVFSDKQLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKNLLTVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI GP + + + V V + + L + G S + AE AAK A+++ C
Sbjct: 173 GDVDIR-YQVISENGPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAAKNAVEEGLDSC 231
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLD 175
+ + FEA +GAL LD
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLD 132
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 12/224 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ L+ +G+ + + LL R T RS Y N L +N+RLEFLGD VL L+ +D LY F
Sbjct: 16 LEELQQIAGLPLS-LALLERAVTHRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRF 74
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
PE EG L+ RS++VN R + V + + F + + +++ AD LEA +
Sbjct: 75 PELPEGQLAKFRSAVVNMRALAEVARSLRLGEFLRLGRGEESTGGRNKSSILADALEALI 134
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y++ G++ +F F P + D K+ LQ+ +P Y
Sbjct: 135 GAVYVEHGLDGAAEFVHRLFDPLIDRAAALGAGLDWKTSLQELTAAQHL------GVPFY 188
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ E GP + + +T V +G+S ++AE AA+ A
Sbjct: 189 DLSER-GPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQEA 231
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ FP++ EG LA +R+A+V + LA +A+ + L +F+ G +
Sbjct: 58 GDAVLGLVITDTLYRRFPELPEGQLAKFRSAVVNMRALAEVARSLRLGEFLRLGRGEEST 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+A+ EAL+GA++++ G+D A +
Sbjct: 118 GGRNKSSILADALEALIGAVYVEHGLDGAAE 148
>gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041]
gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041]
Length = 232
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 16/235 (6%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITS 281
++++LQ YL + F+ RLLA FT S + N L +R+EFLGD VL+LI S
Sbjct: 1 MIEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVS 60
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA---- 337
+Y+Y +PE +G L+ LR+++V + S + + + + + + R
Sbjct: 61 EYIYKRYPELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLC 120
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D+G A E+F + FP+ L+ W D + DG
Sbjct: 121 DIFESFVGALYLDQGRPAVEKFVQRVIFPK-----LDMGWFDHAVDAKTSLQEFLQRDG- 174
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++E G N+ ++ V V + +A G+S +QAEM AA+ AL+K
Sbjct: 175 --DVLIEYHLLEESGTENNPAFHVDVAADGQVIADGQGSSKKQAEMQAAQRALKK 227
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +++ +P++ +G L RAA+V + AK + ++ HG +L
Sbjct: 51 GDAVLELIVSEYIYKRYPELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G ++ V++
Sbjct: 111 GARQRPGLLCDIFESFVGALYLDQGRPAVEKFVQRVIF 148
>gi|322389960|ref|ZP_08063500.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
gi|321143396|gb|EFX38834.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
Length = 242
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY P E
Sbjct: 23 IVFSDSSLLDTAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLVISEYLYKEHPNRPE 80
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS RS +V + + D + + + +DR DL EAFLGA+ +
Sbjct: 81 GDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILGDLFEAFLGALLL 140
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
D+G+EA ++F P+++ +Q D K++LQ+ D+ I Y+V+
Sbjct: 141 DQGVEAVKRFIYQVMIPKVETGQFSQVI-DYKTRLQELLQV-------HGDVEIQYQVVS 192
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP +++ + V V+ + L G S + AE AA+ A++
Sbjct: 193 ESGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAARNAVE 234
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ P+ EG L+ +R+ IV+ + LA ++ + ++ G +
Sbjct: 59 GDAVLQLVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKS 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + + FEA +GAL LD G++ + V+ E +F Q + Y LQE
Sbjct: 119 GGRDRDTILGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTR-LQE 176
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F + LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
Length = 259
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
GV +N LL + T S Y + + +NQRLEFLGD VL+L+ S YLY+ +PE EG
Sbjct: 16 GVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSGYLYSSYPECAEG 75
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ LR+++V + + V + + + + + ++R AD EA LGA+Y+D
Sbjct: 76 ELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERSGGRERPSILADSFEALLGAVYLD 135
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G+E F P + + + D K++LQ+ L P+ Y ++
Sbjct: 136 QGLEKTRMFALKFLAPVINDVLEGRVDRDYKTELQE------MLQKKSPEPISYVILNEE 189
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
GP + + +T V + + + TG S ++AE AAK+AL + PS
Sbjct: 190 GPDHQKLFTAGVVYCGIIIGQGTGRSKKEAEQQAAKIALLELPS 233
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ +P+ EG L RAAIV LA +A+++ L + G +
Sbjct: 53 GDAVLELLVSGYLYSSYPECAEGELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
E +A+ FEAL+GA++LD G++
Sbjct: 113 GGRERPSILADSFEALLGAVYLDQGLE 139
>gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901]
gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901]
Length = 229
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 16/229 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+L L + F+ I LL + + RS+G N N+RLEFLGD++L + ++ LY
Sbjct: 8 KLNQLSKALNYTFSDISLLEKALSHRSVGSNN-----NERLEFLGDSLLNFLIAENLYQR 62
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
FP+ EG LS LR+SLV T + + D + F + ++ R AD +EA
Sbjct: 63 FPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKSGGFRRASILADAVEAL 122
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y++ GM+ C F RL LN DPK++LQ+ LR +P +P+
Sbjct: 123 IGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSVKDPKTRLQEYLQELR-----QP-LPV 176
Query: 404 YKVIEHVGPTNSRSYTVAVYF-KNERLAKATGNSIQQAEMNAAKVALQK 451
Y V +G +S + V+ +++ AT +S + AE AA L++
Sbjct: 177 YTVESQLGQAHSPEFQVSCDIGRSQGKTVATSSSKRNAEKLAAAAMLKQ 225
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + +L+ FP EG L+ RA++V+ + LA LAK L +F+ G
Sbjct: 47 GDSLLNFLIAENLYQRFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKS 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-VADQVF-------------SSVLYKDNEVRFK 198
+A+ EAL+GA++L+ G+D D V SSV KD + R +
Sbjct: 107 GGFRRASILADAVEALIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSV--KDPKTRLQ 164
Query: 199 QWMYYPQHPL 208
+++ + PL
Sbjct: 165 EYLQELRQPL 174
>gi|347750528|ref|YP_004858093.1| ribonuclease III [Bacillus coagulans 36D1]
gi|347583046|gb|AEO99312.1| ribonuclease III [Bacillus coagulans 36D1]
Length = 246
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 21/223 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F + LL + FT S Y N N+RLEFLGD VL+L S YL+N FP +
Sbjct: 24 GIHFQDVNLLKQAFTHSS--YVNEHPEKRRHDNERLEFLGDAVLELTVSHYLFNRFPSMN 81
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG ++ LR+S+V + + N+ + F I+ K + R AD+ EAF+GA
Sbjct: 82 EGEMTKLRASVVCEPSLVIFANE--LHFGEYILLGKGEEMTGGRTRPALLADVFEAFIGA 139
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+DKG++A + FP++ + + D KSKLQ+ RT + Y +
Sbjct: 140 LYLDKGLKAVVSLLEKVVFPKIDEGLFSS-TADYKSKLQEYVQK-RT-----SGVLEYTI 192
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
++ GP + + + +V N+ L G S ++AE AA+ AL
Sbjct: 193 LDERGPAHDKEFVSSVSLNNKALGTGKGRSKKEAEQQAAQTAL 235
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ FP + EG + RA++V L A + +++L G ++
Sbjct: 61 GDAVLELTVSHYLFNRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMT 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD G+ + V++
Sbjct: 121 GGRTRPALLADVFEAFIGALYLDKGLKAVVSLLEKVVF 158
>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
Length = 223
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 108/195 (55%), Gaps = 16/195 (8%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
+N+RLE+LGD VL L+ ++LY FPEH EG LS +R++LVN ++ I + F
Sbjct: 32 NNERLEYLGDAVLDLLIGEFLYQEFPEHKEGDLSKMRAALVNEQSFMRFAKAIHLQDFIL 91
Query: 324 IINPKVDLKMKDRADLL----EAFLGAMYIDKGMEACEQFCKVC---FFPRLQYFILNQE 376
I + + + +++ +L EA +GA+Y++ G+E + +P++ L
Sbjct: 92 ISSNEETNQGREKPSILSSAFEALIGAVYLEAGLERAKDITYHLLHKLYPKIDTQSL--- 148
Query: 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
+ D K+ LQ+ +IP Y+++E +GP + + + V+VY +N+ AKA G S
Sbjct: 149 FTDYKTALQELT------QAHFHEIPKYELLEEIGPDHCKKFKVSVYIQNQEYAKAIGTS 202
Query: 437 IQQAEMNAAKVALQK 451
+ A+ N AK+A QK
Sbjct: 203 KKSAQQNCAKIAYQK 217
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+ FP+ +EG L+ RAA+V Q AK I L+DF+L + + E +++
Sbjct: 52 LYQEFPEHKEGDLSKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSA 111
Query: 165 FEALMGALFLDGGIDVADQVFSSVLYK 191
FEAL+GA++L+ G++ A + +L+K
Sbjct: 112 FEALIGAVYLEAGLERAKDITYHLLHK 138
>gi|374323432|ref|YP_005076561.1| ribonuclease iii [Paenibacillus terrae HPL-003]
gi|357202441|gb|AET60338.1| ribonuclease iii [Paenibacillus terrae HPL-003]
Length = 232
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 32/225 (14%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITS 281
LKQLQ + + FN+ +LL + FT S Y N S N+RLEFLGD VL+L S
Sbjct: 5 LKQLQQKLH---IQFNNRQLLKQAFTHAS--YVNEHRFSQHADNERLEFLGDAVLELTVS 59
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
+ LYN +P EG L+ LR+++V S+V +G+ F ++ K + R
Sbjct: 60 EQLYNQYPNRPEGELTKLRAAIVCE--PSLVKFAVGLEFGQYVLLGKGEELTGGRTRPAL 117
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ--EWNDPKSKLQQCCL--TL 391
AD+ EAF+GA+Y+D+G++A F + FP++ +LN + +D K++LQ+ +
Sbjct: 118 LADVFEAFVGALYLDQGLDAVRSFLERYIFPQI---VLNGKLQMSDFKTELQELTQHHNM 174
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
L+ YK++E GP + R + VY +ERL TG S
Sbjct: 175 GMLE--------YKIVEERGPAHEREFVAEVYMDSERLGTGTGRS 211
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLE--DFMLYAHGSD 150
G+ + S L++ +P+ EG L RAAIV L A +GLE ++L G +
Sbjct: 50 GDAVLELTVSEQLYNQYPNRPEGELTKLRAAIVCEPSLVKFA--VGLEFGQYVLLGKGEE 107
Query: 151 LCHEVELKHAMANCFEALMGALFLDGGIDV 180
L +A+ FEA +GAL+LD G+D
Sbjct: 108 LTGGRTRPALLADVFEAFVGALYLDQGLDA 137
>gi|365154598|ref|ZP_09351029.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
gi|363649573|gb|EHL88682.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
Length = 223
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 22/236 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ E + G F LL T +S T L +N+RLEFLGD V+ L+ ++YL+
Sbjct: 1 MKNLEEFERNLGYKFKQSELLEEALTHKS---TKQAL-NNERLEFLGDAVMDLLVAEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
F + EG +S LR++LVN ++ + + + M F + + + +++ +D E
Sbjct: 57 KKFSKIAEGDMSKLRAALVNEKSFANMSRRLKMGEFLRLSQAEENNGGREKDSILSDAFE 116
Query: 342 AFLGAMYIDKGMEACEQFC----KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
A +GA+Y++ G++ + ++C +P++ + L +++ ++ Q L +
Sbjct: 117 AVMGAIYLEAGLDKVREISISLLELC-YPKIDFAHLEKDYKTALQEVTQANLGV------ 169
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
IP Y++I GP + + + +A+ + +++A G+S +QA+ AAK+AL+K
Sbjct: 170 ---IPTYELISSFGPDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEKIK 222
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 55/97 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +LF F I EG ++ RAA+V + A++++R+ + +F+ + +
Sbjct: 43 GDAVMDLLVAEYLFKKFSKIAEGDMSKLRAALVNEKSFANMSRRLKMGEFLRLSQAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +++ FEA+MGA++L+ G+D ++ S+L
Sbjct: 103 GGREKDSILSDAFEAVMGAIYLEAGLDKVREISISLL 139
>gi|289741043|gb|ADD19269.1| transmembrane protein 179 [Glossina morsitans morsitans]
Length = 231
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 64/85 (75%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
M + N+LLLSQI G+V+ +LSLC+I+P++++Q F GHCLLF+TG W+EADG F W+
Sbjct: 1 MTLANVLLLSQITGHVLLIILSLCVIVPLSVNQHSFCGHCLLFTTGKWREADGMFDARWS 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYR 85
S +C + +F GV +F++S QIYR
Sbjct: 61 SSGFCIFPLFTGVFIFIVSCGQIYR 85
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISE 522
FGAW +F+ VG+ V +LLKL HQ++N++VSMY ERQ L+++
Sbjct: 167 FGAWGAFAVSVGITVISLLKLVNNHQVRNIKVSMYLERQRLVNQ 210
>gi|419799679|ref|ZP_14325013.1| ribonuclease III [Streptococcus parasanguinis F0449]
gi|385697591|gb|EIG28009.1| ribonuclease III [Streptococcus parasanguinis F0449]
Length = 233
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY P E
Sbjct: 14 IVFSDSSLLDTAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLVISEYLYKEHPNRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS RS +V + + D + + + +DR DL EAFLGA+ +
Sbjct: 72 GDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
D+G+EA ++F P+++ +Q D K++LQ+ L + G D+ I Y+V+
Sbjct: 132 DQGVEAVKRFIYQVMIPKVETGQFSQVI-DYKTRLQE----LLQVHG---DVEIQYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP +++ + V V+ + + G S + AE AA+ A++
Sbjct: 184 ESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ P+ EG L+ +R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + + FEA +GAL LD G++ + V+ E +F Q + Y LQE
Sbjct: 110 GGRDRDTILGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTR-LQE 167
>gi|392552209|ref|ZP_10299346.1| RNase III, ds RNA [Pseudoalteromonas spongiae UST010723-006]
Length = 225
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 15/230 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ K + L G FN +RLL + T RS + N+RLEFLGD++L + +D L
Sbjct: 1 MTKDVNLLFKKIGYSFNDVRLLEQAMTHRSYRGAH-----NERLEFLGDSILSFVIADAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y+ FP+ EG LS +RS+LV +T + + + F + ++ R AD +
Sbjct: 56 YHQFPKAREGDLSRMRSTLVRGQTLAEFGVEFELGDFLRLGPGELKSGGYRRESTLADAV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+++D +E C + + RLQ DPK+ LQ+ L +
Sbjct: 116 EAIIGAVFLDSDIETCRELVLNWYQTRLQAITPGHNQKDPKTLLQEY------LQARKIP 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+P Y VI+ G +++ +TV +N+ A G+S ++AE AA++AL+
Sbjct: 170 LPSYNVIDTKGQAHNQVFTVECLIENKPQVVAKGSSRRKAEQKAAELALK 219
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+H FP EG L+ R+ +V+ Q LA L DF+ G
Sbjct: 43 GDSILSFVIADALYHQFPKAREGDLSRMRSTLVRGQTLAEFGVEFELGDFLRLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ EA++GA+FLD I+
Sbjct: 103 GGYRRESTLADAVEAIIGAVFLDSDIET 130
>gi|416120344|ref|ZP_11594983.1| Ribonuclease III [Campylobacter concisus UNSWCD]
gi|384576845|gb|EIF06166.1| Ribonuclease III [Campylobacter concisus UNSWCD]
Length = 223
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 126/236 (53%), Gaps = 22/236 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ E + G F LL T +S T L +N+RLEFLGD V+ L+ ++YL+
Sbjct: 1 MKNLEEFERNLGYKFKKSELLEEALTHKS---TKQAL-NNERLEFLGDAVMDLLVAEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
F + EG +S LR++LVN ++ + + + M F + + + +++ +D E
Sbjct: 57 KKFSKIAEGDMSKLRAALVNEKSFANMSRRLNMGEFLRLSQAEENNGGREKDSILSDAFE 116
Query: 342 AFLGAMYIDKGMEACEQFC----KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
A +GA+Y++ G++ + ++C +P++ + L +++ ++ Q L +
Sbjct: 117 AVMGAIYLEAGLDKVREISISLLELC-YPQIDFAHLEKDYKTALQEVTQATLGV------ 169
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
IP Y++I GP + + + +A+ + +++A G+S +QA+ AAK+AL+K
Sbjct: 170 ---IPTYELIGSFGPDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEKIK 222
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 55/97 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +LF F I EG ++ RAA+V + A++++R+ + +F+ + +
Sbjct: 43 GDAVMDLLVAEYLFKKFSKIAEGDMSKLRAALVNEKSFANMSRRLNMGEFLRLSQAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +++ FEA+MGA++L+ G+D ++ S+L
Sbjct: 103 GGREKDSILSDAFEAVMGAIYLEAGLDKVREISISLL 139
>gi|377809761|ref|YP_005004982.1| ribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361056502|gb|AEV95306.1| ribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 232
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 13/221 (5%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
FN+ LL FT S + N L +R+EFLGD VLQ++ S+YL+ +PE +G L+
Sbjct: 17 FNNHDLLDEAFTQASYVNEHPNQGLKFYERIEFLGDAVLQIVVSEYLFKRYPEMPQGKLT 76
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGM 353
LR+++V + S + + + + + R+ D+ E+F GA+Y+D+G
Sbjct: 77 RLRAAMVKEDSFSDFAKECHFDRYIRLGKGEELSGARQRSSLLCDIFESFTGALYLDQGR 136
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
+A E+F + FP+L + D KS+LQ+ G+ DI Y++I G
Sbjct: 137 DAVEEFVQKVIFPKLDEGRFDHVI-DHKSELQEVLQV-----HGDVDID-YQLIAETGGE 189
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
N R + V + ++L++ G S + AE NAA ALQ+ S
Sbjct: 190 NDRVFEVELIADGKKLSRGKGTSKKLAEQNAANKALQQIKS 230
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P++ +G L RAA+V+ + AK + ++ G +L
Sbjct: 51 GDAVLQIVVSEYLFKRYPEMPQGKLTRLRAAMVKEDSFSDFAKECHFDRYIRLGKGEELS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRF 197
+ + + FE+ GAL+LD G D ++ V++ K +E RF
Sbjct: 111 GARQRSSLLCDIFESFTGALYLDQGRDAVEEFVQKVIFPKLDEGRF 156
>gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 239
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITSD 282
LK+++ E G FN L+ FT S YTN G SN+RLEFLGD++L +I S+
Sbjct: 8 LKKIEEFEEKIGYSFNDKELIDVAFTHSS--YTNEVKGKKKSNERLEFLGDSILDMIVSE 65
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV----DLKMKDRAD 338
L+ ++ + EG L+ RS LV + + C M + N N + +LK +AD
Sbjct: 66 ILFKNYSQKPEGWLTKTRSRLVCTSSFAKACEKFQMSSYLNFGNGEKQGGGELKKHVKAD 125
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE--WNDPKSKLQQCCLTLRTLDG 396
EA A+Y+D E F V + ++N + +ND K+KLQ+ +
Sbjct: 126 TFEAVCAAIYLDSSYENLFNFL-VTNYKAEALHVINDDSIFNDYKTKLQEYH------NA 178
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ I Y++ + GP +S+++T+AV N+ LA G + +QAE AAK A +K
Sbjct: 179 KDKKILKYELTKEEGPEHSKTFTMAVKLGNKILAYGVGKNKKQAEQMAAKAAFEK 233
>gi|337282388|ref|YP_004621859.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
gi|335369981|gb|AEH55931.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
Length = 233
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQ 277
Q+ LL++ Q ++F+ LL FT S Y N L + N+RLEFLGD VLQ
Sbjct: 5 QALLLERFQ-------IVFSDSSLLDTAFTHTS--YANEHRLLKISHNERLEFLGDAVLQ 55
Query: 278 LITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR- 336
L+ S+YLY P EG LS RS +V + + D + + + +DR
Sbjct: 56 LVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRD 115
Query: 337 ---ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRT 393
DL EAFLGA+ +D+G+EA ++F P+++ +Q D K++LQ+
Sbjct: 116 TILGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVI-DYKTRLQELLQV--- 171
Query: 394 LDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
D+ I Y+V+ GP +++ + V V+ + + G S + AE AA+ A++
Sbjct: 172 ----HGDVEIQYQVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ P+ EG L+ +R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + + FEA +GAL LD G++ + V+ E +F Q + Y LQE
Sbjct: 110 GGRDRDTILGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTR-LQE 167
>gi|415886541|ref|ZP_11548321.1| ribonuclease III [Bacillus methanolicus MGA3]
gi|387587228|gb|EIJ79551.1| ribonuclease III [Bacillus methanolicus MGA3]
Length = 252
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 17/236 (7%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 282
KQ + + G+ F +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 KQFKEFQERIGINFEDEKLLKQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTVSQ 74
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
+L+ +P EG L+ LR+++V + N++ + + ++R AD
Sbjct: 75 FLFKKYPMMSEGELTKLRAAVVCEPSLVSFANELSFGELVLLGKGEEMTGGRERPALLAD 134
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+ EAF+GA+Y+DKG+E +F ++ FP++ + D KS+LQ+ DG
Sbjct: 135 VFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVM-DYKSQLQELV----QRDGA- 188
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
Y++++ GP ++R + V L TG S ++AE +AA++AL+K +
Sbjct: 189 -GTIEYRILQEKGPAHNREFVSLVTLNKVELGTGTGRSKKEAEQHAAQMALEKLKA 243
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAA+V L A + + +L G ++
Sbjct: 64 GDAVLELTVSQFLFKKYPMMSEGELTKLRAAVVCEPSLVSFANELSFGELVLLGKGEEMT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
E +A+ FEA +GAL+LD GI+ + V++ K N F M Y LQE
Sbjct: 124 GGRERPALLADVFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVMDYKSQ-LQE 181
>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
gi|123534042|sp|Q2SL32.1|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
Length = 226
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 16/227 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+L+ L+ + G F LL T RS G N N+RLEFLGD+VL I +DYL+
Sbjct: 4 KLERLQRALGYTFKEPALLTLALTHRSFGGRN-----NERLEFLGDSVLNFIIADYLFGR 58
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
F E EG LS LR+ +V T + + + + + + + ++ R AD LE+
Sbjct: 59 FEEAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALESI 118
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y+D G E C F RLQ L D K++LQ+ L + ++P
Sbjct: 119 IGAIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEY------LQARQLNLPR 172
Query: 404 YKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
Y+VI G +++++ V + TG+S + AE AAK AL
Sbjct: 173 YEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQAL 219
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ FI + +LF F + EG L+ RA +V+ LA +A+ L +++ G
Sbjct: 43 GDSVLNFIIADYLFGRFEEAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV-ADQV---FSSVL--------YKDNEVRFKQW 200
+ +A+ E+++GA++LD G +V AD+V F + L KD++ R +++
Sbjct: 103 GGFRRESILADALESIIGAIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEY 162
Query: 201 MYYPQHPL 208
+ Q L
Sbjct: 163 LQARQLNL 170
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 37/245 (15%)
Query: 227 KQLQYLEYSS--GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
K++Q+ E+ S G F LL + FT S Y N N+RLEFLGD VL+L
Sbjct: 16 KEMQFKEFQSRLGFEFQDSNLLKQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTV 73
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN-------IINPKVDLKM 333
S +LY +P EG L+ LR+ +VVC + + FFAN ++ K +
Sbjct: 74 SQFLYKKYPLMSEGELTKLRA--------AVVC-EPSLVFFANELFFGQLVLLGKGEELT 124
Query: 334 KDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQC 387
R AD+ EAF+GA+Y+DKG++ +F + FP++ + D KS+LQ+
Sbjct: 125 GGRARPALLADVFEAFIGALYLDKGIDVVIEFLEKIVFPKINAGAFSHVM-DYKSQLQEL 183
Query: 388 CLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKV 447
DG + YKV+ GP ++R + V + L TG S ++AE +AA++
Sbjct: 184 V----QRDG--TGMIEYKVLHEKGPAHNREFVSRVSLSGDELGTGTGRSKKEAEQHAAQM 237
Query: 448 ALQKC 452
AL+K
Sbjct: 238 ALEKL 242
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAA+V L A + +L G +L
Sbjct: 65 GDAVLELTVSQFLYKKYPLMSEGELTKLRAAVVCEPSLVFFANELFFGQLVLLGKGEELT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD GIDV + +++ K N F M Y LQE
Sbjct: 125 GGRARPALLADVFEAFIGALYLDKGIDVVIEFLEKIVFPKINAGAFSHVMDYKSQ-LQE 182
>gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
Length = 230
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 11/212 (5%)
Query: 250 FTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQ 309
T RS + N + +N+RLEFLGD VLQL T+ +L++H E EG L+ +RS++VN+R
Sbjct: 21 LTHRSYAFENGGIPTNERLEFLGDAVLQLKTTKWLFDHNTEASEGRLAKMRSAVVNSRAL 80
Query: 310 SVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
+ V G+ F + N + +D+ AD +EA +GA Y+ +G +A +
Sbjct: 81 AGVARTYGIGEFLLLGNGEERTGGRDKDSILADTVEAIIGACYVSQGPDAANALVERLVG 140
Query: 366 PRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFK 425
P L+ + D K+ LQ+ L ++ + GP ++R +T Y
Sbjct: 141 PLLEDAVNLGAGMDYKTTLQEAAADLSL-------GAVHYDVTGEGPDHARVFTAVAYLG 193
Query: 426 NERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
R A G S + AE+ AA++A++K P
Sbjct: 194 ETRWASGEGTSKKNAELVAAEIAVKKILEKYP 225
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q T+ LF + EG LA R+A+V ++ LA +A+ G+ +F+L +G +
Sbjct: 43 GDAVLQLKTTKWLFDHNTEASEGRLAKMRSAVVNSRALAGVARTYGIGEFLLLGNGEERT 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK--DNEVRFKQWMYYPQHPLQE 210
+ +A+ EA++GA ++ G D A+ + ++ ++ V M Y + LQE
Sbjct: 103 GGRDKDSILADTVEAIIGACYVSQGPDAANALVERLVGPLLEDAVNLGAGMDY-KTTLQE 161
Query: 211 QEPD 214
D
Sbjct: 162 AAAD 165
>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
Length = 248
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 229 LQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L LE S GV F LL A + T+ N + GSN+R+EFLGD VL +I +D LY+
Sbjct: 15 LTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYH 74
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLL 340
FP+ EG L+ RS LV R +S+V +G+ + + + K R A
Sbjct: 75 DFPDIQEGDLTRFRSLLV--RRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 132
Query: 341 EAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
EA L A+YIDKGM+ + F R+Q N ++ +L Q L L
Sbjct: 133 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQL------ 186
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y++ GP ++R + VY ++ A+ +G S ++AE NAAKVALQ+
Sbjct: 187 ---TPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 237
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
I + L+H FPDI+EG L +R+ +V+ + L +A I L ++ G D+
Sbjct: 67 IFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPA 126
Query: 160 AMANCFEALMGALFLDGGIDVADQV 184
+A FEA++ A+++D G+DV +V
Sbjct: 127 NLAGAFEAVLAAIYIDKGMDVTREV 151
>gi|418975712|ref|ZP_13523610.1| ribonuclease III [Streptococcus oralis SK1074]
gi|383347158|gb|EID25159.1| ribonuclease III [Streptococcus oralis SK1074]
Length = 232
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DKG+ ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKGVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD G+ V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKGVARVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|334340306|ref|YP_004545286.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334091660|gb|AEG60000.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 249
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 12/226 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYN 286
+Q L+ G +++ LL + T S + + G NQRLEFLGD VL+L+ S++LY
Sbjct: 8 IQRLKVKLGFRWHNPALLTQALTHSSCVHESRGHGLCHNQRLEFLGDAVLELLISEHLYQ 67
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
FP+ EG L+ R++ V + + V + + + + ++R AD EA
Sbjct: 68 MFPDRTEGELTKKRAASVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEA 127
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
LGA+Y+D+G+E +F C P ++ + + D K++LQ+ TL P+
Sbjct: 128 LLGAIYLDQGLEVTRKFVLACLQPVIEDVVAGRLDRDYKTELQE------TLQQTSPEPL 181
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
Y ++ GP +++++T V ++ + + + G+S ++AE AAK A
Sbjct: 182 SYVIMNETGPDHNKTFTAGVIYRGQVIGRGNGHSKKEAEQQAAKDA 227
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S HL+ +FPD EG L RAA V LA +A+ + L + G +
Sbjct: 53 GDAVLELLISEHLYQMFPDRTEGELTKKRAASVCEPSLAKVARGLDLGRCLRMGRGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
E +A+ FEAL+GA++LD G++V
Sbjct: 113 GGRERPSILADAFEALLGAIYLDQGLEV 140
>gi|114566311|ref|YP_753465.1| ribonuclease III [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318607|sp|Q0AYW0.1|RNC_SYNWW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|114337246|gb|ABI68094.1| RNAse III [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 233
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 29/219 (13%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
L+ T S T+ +NQRLEFLGD VL L+ ++YLYNH+ EG L+ +R+
Sbjct: 24 LITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKIRA--- 80
Query: 305 NNRTQSVVCNDIGMPFFANIIN----------PKVDLKMKDR---ADLLEAFLGAMYIDK 351
VVC D + FA IN ++ K + AD +EA +GA+Y+D+
Sbjct: 81 -----KVVCED-ALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQ 134
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G+E ++F + L + ++ D KSKLQ+ + + + Y +IE G
Sbjct: 135 GLETVQRFI-IRQLEELISETASGDYYDYKSKLQEL------VQARDKENVSYAIIEESG 187
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P +++ + VY++ + LA G S ++AE AA+ LQ
Sbjct: 188 PAHAKVFVAGVYYREQLLATGEGKSKKEAEQKAAQKVLQ 226
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L++ + EG L RA +V LA A+ I L ++L G ++
Sbjct: 51 GDAVLNLVVAEYLYNHYGRKAEGELTKIRAKVVCEDALAIFARNINLGQYLLLGRGEEMS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ K +A+ EA++GA++LD G++
Sbjct: 111 GGRKRKSILADAVEAVIGAIYLDQGLET 138
>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
Length = 237
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 229 LQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L LE S GV F LL A + T+ N + GSN+R+EFLGD VL +I +D LY+
Sbjct: 4 LTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYH 63
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLL 340
FP+ EG L+ RS LV R +S+V +G+ + + + K R A
Sbjct: 64 DFPDIQEGDLTRFRSLLV--RRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 121
Query: 341 EAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
EA L A+YIDKGM+ + F R+Q N ++ +L Q L L
Sbjct: 122 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQL------ 175
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y++ GP ++R + VY ++ A+ +G S ++AE NAAKVALQ+
Sbjct: 176 ---TPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 226
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
I + L+H FPDI+EG L +R+ +V+ + L +A I L ++ G D+
Sbjct: 56 IFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPA 115
Query: 160 AMANCFEALMGALFLDGGIDVADQV 184
+A FEA++ A+++D G+DV +V
Sbjct: 116 NLAGAFEAVLAAIYIDKGMDVTREV 140
>gi|387879962|ref|YP_006310265.1| ribonuclease III [Streptococcus parasanguinis FW213]
gi|386793412|gb|AFJ26447.1| ribonuclease III [Streptococcus parasanguinis FW213]
Length = 254
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 118/236 (50%), Gaps = 19/236 (8%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLI 279
P+ K L ++F+ LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 21 PMEKLQTLLSERFQIVFSDSSLLDTAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLV 78
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--- 336
S+YLY P EG LS RS +V + + D + + + +DR
Sbjct: 79 ISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTI 138
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
DL EAFLGA+ +D+G+EA ++F P+++ +Q D K++LQ+ L +
Sbjct: 139 LGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVI-DYKTRLQE----LLQVH 193
Query: 396 GGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
G D+ I Y+V+ GP +++ + V V+ + + G S + AE AA+ A++
Sbjct: 194 G---DVEIQYQVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 246
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ P+ EG L+ +R+ IV+ + LA ++ + ++ G +
Sbjct: 71 GDAVLQLVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKS 130
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + + FEA +GAL LD G++ + V+ E +F Q + Y LQE
Sbjct: 131 GGRDRDTILGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTR-LQE 188
>gi|417918331|ref|ZP_12561883.1| ribonuclease III [Streptococcus parasanguinis SK236]
gi|342828786|gb|EGU63152.1| ribonuclease III [Streptococcus parasanguinis SK236]
Length = 233
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY P E
Sbjct: 14 IVFSDSSLLDTAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLVISEYLYKEHPNRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS RS +V + + D + + + +DR DL EAFLGA+ +
Sbjct: 72 GDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
D+G+EA ++F P+++ +Q D K++LQ+ L + G D+ I Y+V+
Sbjct: 132 DQGVEAVKRFIYQVMIPKVETGQFSQVI-DYKTRLQE----LLQVHG---DVEIQYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP +++ + V V+ + + G S + AE AA+ A++
Sbjct: 184 ESGPAHAKEFEVEVFVNGQTMGCGHGRSKKLAEQEAARNAVE 225
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ P+ EG L+ +R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLVISEYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + + FEA +GAL LD G++ + V+ E +F Q + Y LQE
Sbjct: 110 GGRDRDTILGDLFEAFLGALLLDQGVEAVKRFIYQVMIPKVETGQFSQVIDYKTR-LQE 167
>gi|338732330|ref|YP_004670803.1| ribonuclease 3 [Simkania negevensis Z]
gi|336481713|emb|CCB88312.1| ribonuclease 3 [Simkania negevensis Z]
Length = 236
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 119/239 (49%), Gaps = 15/239 (6%)
Query: 218 QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTV 275
Q +E+ L L +E G F LL R F RS N + G N+RLEFLGD V
Sbjct: 2 QTIEE--LKSALSQIEAKVGYQFKDESLLERAFIHRSFINENRGVVKGHNERLEFLGDAV 59
Query: 276 LQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD 335
L ++ SD+LY+ P+H EG LS LRS LV T ++ + + F + + + K
Sbjct: 60 LSVLVSDFLYSELPDHPEGELSYLRSRLVEATTCAMYIEKLDVQSFILMGKGESMNQGKG 119
Query: 336 R----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL 391
R ADL EA +GA+Y+D ME +F F + I + N K++LQ C
Sbjct: 120 RSTILADLFEALIGAIYLDGAMEEAHRFFFSHFHSFITEIIESPTRN-WKAELQDYCQK- 177
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ +P P Y+VI GP + +++ V V N+ L K G S ++AE A+ A++
Sbjct: 178 ---NYQKP--PTYEVINEEGPDHEKTFYVVVKLDNQILGKGAGTSKKEAEQMCAQQAIE 231
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ PD EG L+ R+ +V+ A +++ ++ F+L G +
Sbjct: 56 GDAVLSVLVSDFLYSELPDHPEGELSYLRSRLVEATTCAMYIEKLDVQSFILMGKGESMN 115
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+A+ FEAL+GA++LDG ++ A
Sbjct: 116 QGKGRSTILADLFEALIGAIYLDGAMEEA 144
>gi|406027046|ref|YP_006725878.1| ribonuclease III [Lactobacillus buchneri CD034]
gi|405125535|gb|AFS00296.1| ribonuclease III [Lactobacillus buchneri CD034]
Length = 229
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 17/228 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNH 287
L+ G+ + LL FT S Y N G +RLEFLGD VLQLI SDY++
Sbjct: 2 LKQDFGIHIDDQDLLDEAFTQAS--YVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKR 59
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAF 343
+P+ +G L+ LR+++VN ++ S + + + + +DR D+ E+F
Sbjct: 60 YPKMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFESF 119
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+G +Y+D+G +F FP+L + E+ D K++LQ+ L DG P
Sbjct: 120 VGCLYLDQGQAEVTRFVTKVIFPKLDEGMF-AEFFDHKTELQE----LAQADG--PVAID 172
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y++++ GP N RS+ V V + G+S + AE AA+ AL++
Sbjct: 173 YELVDEYGPDNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 220
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S ++F +P + +G L RAA+V Q + A+ ++ G +
Sbjct: 44 GDAVLQLIVSDYIFKRYPKMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKA 103
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + + FE+ +G L+LD G
Sbjct: 104 GARDRDSLLCDIFESFVGCLYLDQG 128
>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
Length = 235
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 10/217 (4%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G+ + LL T S Y + NQRLEFLGD VL+++ S++LY P+ EG L
Sbjct: 15 GLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRRLPDAPEGDL 74
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +R+++V + V ++ + + + + ++R AD LEA LGA+Y+D+G
Sbjct: 75 TKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADALEALLGALYLDQG 134
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+E F P + + + D K++LQ+ L P+ Y +I+ GP
Sbjct: 135 LEVARWFALQSLEPIISATLAGKGEADYKTRLQEL------LQKRSPEPLRYVIIKEEGP 188
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+++ +T V ++ + L + TG + ++AE +AA+ AL
Sbjct: 189 DHNKLFTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 17/159 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S HL+ PD EG L RAA+V LAH+A+ + L ++ G +L
Sbjct: 50 GDAVLEIVVSEHLYRRLPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA--------DQVFSSVLYKDNEVRFKQWMYYP 204
E +A+ EAL+GAL+LD G++VA + + S+ L E +K +
Sbjct: 110 GGRERPSVLADALEALLGALYLDQGLEVARWFALQSLEPIISATLAGKGEADYKTRL--- 166
Query: 205 QHPLQEQEPDGDRQWV--EQSPLLKQLQYLEYSSGVIFN 241
Q LQ++ P+ R + E+ P +L +++GV++
Sbjct: 167 QELLQKRSPEPLRYVIIKEEGPDHNKL----FTAGVVYR 201
>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
Length = 251
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 21/225 (9%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F LL + FT S Y N N+RLEFLGD VL+L S YLY +PE E
Sbjct: 32 ITFKKPTLLYQAFTHSS--YVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYMKYPEMSE 89
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G L+ LR+++V + + N++G F I+ K + R AD+ E+++GA+
Sbjct: 90 GELTKLRAAIVCEPSLVLFANELG--FGKYILLGKGEELTGGRTRPALLADVFESYIGAL 147
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D+G+E F ++ FP++ + D KS+LQ+ T Y++I
Sbjct: 148 YLDQGLEPVVSFLEMVLFPKVDIGAFSHVM-DYKSQLQELVQQKNT------GTLSYEII 200
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+ +GP +SR + V + L G S ++AE AA++A++K
Sbjct: 201 DEIGPAHSRVFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRKL 245
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P++ EG L RAAIV L A +G ++L G +L
Sbjct: 68 GDAVLELSVSHYLYMKYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FE+ +GAL+LD G++ VL+
Sbjct: 128 GGRTRPALLADVFESYIGALYLDQGLEPVVSFLEMVLF 165
>gi|336314846|ref|ZP_08569761.1| ribonuclease III [Rheinheimera sp. A13L]
gi|335880905|gb|EGM78789.1| ribonuclease III [Rheinheimera sp. A13L]
Length = 224
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 23/234 (9%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
S L+K+L Y F + LL + T RS + N+RLEFLGD +L ++ ++
Sbjct: 6 SGLMKKLGYQ-------FQQVALLEQALTHRSCKGEH-----NERLEFLGDAILSMVIAE 53
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVD---LKMKD-RAD 338
LY HFP+ EG L+ +RSSLV T + + ++ + F + ++ L+ + +AD
Sbjct: 54 ALYIHFPKAREGDLTRMRSSLVKGVTLAEIAKELELAEFLRLGPGEMKSGGLRRESIQAD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA LGA+++D G+EAC++ + RL I D K++LQ+ L G
Sbjct: 114 AVEAILGAIFLDAGIEACKERILSWYGSRL-TVIQPGVHKDSKTQLQE------YLQGRR 166
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+P+Y+VI+ G + + +TV + A+GNS ++AE ++A++ L++
Sbjct: 167 LPLPLYEVIDTQGDDHDQIFTVRCTVQGRAPVTASGNSRRKAEQDSARILLEQV 220
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ FP EG L R+++V+ LA +AK + L +F+ G
Sbjct: 43 GDAILSMVIAEALYIHFPKAREGDLTRMRSSLVKGVTLAEIAKELELAEFLRLGPGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-----------VFSSVLYKDNEVRFKQWM 201
+ + A+ EA++GA+FLD GI+ + V ++KD++ + ++++
Sbjct: 103 GGLRRESIQADAVEAILGAIFLDAGIEACKERILSWYGSRLTVIQPGVHKDSKTQLQEYL 162
Query: 202 YYPQHPL 208
+ PL
Sbjct: 163 QGRRLPL 169
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
F I LL T +S LG +N+RLEFLGDTVL L+ ++YL +P++ EG L
Sbjct: 18 FRKIDLLEEATTHKSFMNEGRRLGVTQNNERLEFLGDTVLGLVVAEYLMVTYPKYPEGIL 77
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S + +V+ T + V +G+ F I + + +++ AD +EA + A+Y+D G
Sbjct: 78 SKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAMEAVIAAIYLDSG 137
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
++A F F ++ + D K+ LQ+ C R L+ +P+Y+V++ GP
Sbjct: 138 LDAARTFIIGHFRSVIEQTVHEDSIQDYKTDLQEYC--QRELE----TLPVYQVMDQRGP 191
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ + + VAV + + + +G S ++AE AAK AL +
Sbjct: 192 DHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSR 230
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L +P EG L+ ++ +V LA +++ +G+ F+L G +L
Sbjct: 53 GDTVLGLVVAEYLMVTYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELT 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E +A+ EA++ A++LD G+D A
Sbjct: 113 QGREKSSLLADAMEAVIAAIYLDSGLDAA 141
>gi|375089330|ref|ZP_09735657.1| ribonuclease III [Facklamia languida CCUG 37842]
gi|374567106|gb|EHR38337.1| ribonuclease III [Facklamia languida CCUG 37842]
Length = 231
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVF--TTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+ Y+ G+ N+ +L+ + F T+ + L SN+RLEFLGD VL+L S++LY+
Sbjct: 5 MTYISEDLGIKVNNPQLIEQAFHHTSYVNEHGGSHLASNERLEFLGDAVLELAVSNFLYS 64
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
+P EG L+ +R+ LV + + V + F + + R +D EA
Sbjct: 65 TYPREGEGVLTRMRAQLVREPSLAYVSRQLKFDHFLRLGKGEQATGGSQRDSILSDCFEA 124
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
FL A+Y+D+G + E F F Q IL D K++ Q+ G I
Sbjct: 125 FLAAIYLDQGSDQAEAFLSRVLFDHHQE-ILRLTNQDYKTQFQEWVQA-----KGSVKIE 178
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y++++ GP + R +T ++ +++A+ +G S +QAEM+AAK AL +
Sbjct: 179 -YRLLDQTGPAHDRCFTSGLFLNGQQIAQGSGKSKKQAEMHAAKQALDQ 226
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P EG L RA +V+ LA++++++ + F+ G
Sbjct: 50 GDAVLELAVSNFLYSTYPREGEGVLTRMRAQLVREPSLAYVSRQLKFDHFLRLGKGEQAT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-----------KDNEVRFKQWM 201
+ +++CFEA + A++LD G D A+ S VL+ +D + +F++W+
Sbjct: 110 GGSQRDSILSDCFEAFLAAIYLDQGSDQAEAFLSRVLFDHHQEILRLTNQDYKTQFQEWV 169
>gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202522|ref|YP_004648667.1| ribonuclease III [Lactobacillus reuteri SD2112]
gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447762|gb|AEI56377.1| ribonuclease III [Lactobacillus reuteri SD2112]
Length = 233
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITS 281
++K+LQ YL + F++ LLA FT S + N L +R+EFLGD VL+LI S
Sbjct: 1 MIKELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA---- 337
+Y+Y FPE +G L+ LR+++V + S + + + + + ++R
Sbjct: 61 EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D+G A E+F + FP+ L+ W D + DG
Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPK-----LDMGWFDHAVDAKTSLQEFLQRDG- 174
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
DI I Y ++E G N + V V + + + G+S + AEM AA+ AL
Sbjct: 175 --DIAIEYHLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQAL 225
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +++ FP++ +G L RAA+V + AK + ++ HG ++
Sbjct: 51 GDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E + + FE+ +GAL+LD G ++ V++
Sbjct: 111 GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIF 148
>gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
Length = 236
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLY 285
+ L+ G+ + LL FT S Y N G +RLEFLGD VLQLI SDY++
Sbjct: 7 EMLKQDFGIHIDDQDLLDEAFTQAS--YVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIF 64
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
+P+ +G L+ LR+++VN ++ S + + + + +DR D+ E
Sbjct: 65 KRYPKMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFE 124
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
+F+G +Y+D+G +F FP+L + E+ D K++LQ+ L DG P
Sbjct: 125 SFVGCLYLDQGQAEVTRFVTKVIFPKLDEGMF-AEFFDHKTELQE----LAQADG--PVA 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y++++ GP N RS+ V V + G+S + AE AA+ AL++
Sbjct: 178 IDYELVDEYGPDNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 227
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S ++F +P + +G L RAA+V Q + A+ ++ G +
Sbjct: 51 GDAVLQLIVSDYIFKRYPKMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + + FE+ +G L+LD G
Sbjct: 111 GARDRDSLLCDIFESFVGCLYLDQG 135
>gi|414158590|ref|ZP_11414884.1| ribonuclease 3 [Streptococcus sp. F0441]
gi|410871135|gb|EKS19092.1| ribonuclease 3 [Streptococcus sp. F0441]
Length = 232
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K P C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGPDSC 231
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+ + FEA +GAL LD +
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDV 135
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 11/209 (5%)
Query: 244 RLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSL 303
++L R T RS Y L +N+RLEFLGD+VL L+ +D L+ P+ EG L+ LR+++
Sbjct: 24 KILLRALTHRSYAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHPDLPEGQLAKLRAAV 83
Query: 304 VNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQF 359
VN R + V +G+ + + + +D+ AD LEA +GA+Y+D+G++ +F
Sbjct: 84 VNMRALADVARGLGIGAYIRLGRGEEGTGGRDKSSILADTLEAIIGAVYLDRGLDVASEF 143
Query: 360 CKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYT 419
F P + D K+ LQ+ LT + G +P Y V E GP + +++
Sbjct: 144 VHRLFDPLIATASGLGAGLDWKTSLQE--LTAAEMLG----VPEYHVDES-GPDHQKTFR 196
Query: 420 VAVYFKNERLAKATGNSIQQAEMNAAKVA 448
V E G S ++AE AA+ A
Sbjct: 197 ATVRVAGESYGLGEGRSKKEAEQQAAESA 225
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + LF PD+ EG LA RAA+V + LA +A+ +G+ ++ G +
Sbjct: 52 GDSVLGLVVTDTLFRKHPDLPEGQLAKLRAAVVNMRALADVARGLGIGAYIRLGRGEEGT 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EA++GA++LD G+DVA +
Sbjct: 112 GGRDKSSILADTLEAIIGAVYLDRGLDVASE 142
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 17/208 (8%)
Query: 248 RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307
R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++VN+R
Sbjct: 2 RALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSR 61
Query: 308 TQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVC 363
+ V + + F + + +D+ AD LEA +GA+Y+D+G+ A +
Sbjct: 62 ALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLSAASELVHRL 121
Query: 364 FFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P R +W K+ LQ+ + +L +P Y V E GP + +++T
Sbjct: 122 FDPLIDRSSNLGAGLDW---KTSLQELTAS-ESL-----GVPEYLVTE-TGPDHEKTFTA 171
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 172 AARVGGVSYGTGTGRSKKEAEQQAAESA 199
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 26 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 85
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ +A+ EA++GA++LD G+ A ++
Sbjct: 86 GGRDKASILADTLEAVIGAVYLDQGLSAASEL 117
>gi|348677513|gb|EGZ17330.1| hypothetical protein PHYSODRAFT_300435 [Phytophthora sojae]
Length = 907
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 142/329 (43%), Gaps = 55/329 (16%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + F P+ +EG L R IV N L +AK +L A
Sbjct: 533 GDAVLGFLVASSAFLKLPNADEGFLHQTRVDIVNNISLGKMAKTANFGCLLLSAFDLAKL 592
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL-YKDNEVR-----FKQWMYYPQH 206
+E A+CFEAL+GAL+ D GI + ++ D E+R +
Sbjct: 593 NEDTKGKITADCFEALLGALYKDQGIVPCRALLGKLIDMHDAELRELCFLSTDELLTEAK 652
Query: 207 PLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRS---MGYTNLTL- 262
E++ D ++W + + H RLL R F RS + T+L L
Sbjct: 653 AFVEKDRDAIKKWSK------------------YTHTRLLHRRFAARSGVDIANTHLWLQ 694
Query: 263 ---------------------GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRS 301
S +R+EFLGD+VLQL++S++L + FP H E L+ +RS
Sbjct: 695 TMTHASFQKPQIDDDEFIGHDPSYERIEFLGDSVLQLLSSEFLVDAFPYHQEHLLTQVRS 754
Query: 302 SLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKD-RADLLEAFLGAMYIDK--GMEA 355
SLV N+ ++V + G F N + L ++D AD+ EA LGA+Y++ +
Sbjct: 755 SLVKNKKLAIVARNAGYEEFIRLGNEVKKNGTLYVEDVLADVFEATLGAVYMENPGDLGK 814
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKL 384
FPRL I ++W +P+ L
Sbjct: 815 VRSILDKLLFPRLTEAIRRRQWMNPRKVL 843
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNN-------RTQSVVCNDIGM 318
+RLEFLGD VL + + + P EG L R +VNN +T + C +
Sbjct: 527 ERLEFLGDAVLGFLVASSAFLKLPNADEGFLHQTRVDIVNNISLGKMAKTANFGCLLLSA 586
Query: 319 PFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEAC 356
A + D K K AD EA LGA+Y D+G+ C
Sbjct: 587 FDLAKL---NEDTKGKITADCFEALLGALYKDQGIVPC 621
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
F I LL T +S LG +N+RLEFLGDTVL L+ ++YL +P++ EG L
Sbjct: 18 FRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYLMVTYPKYPEGIL 77
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S + +V+ T + V +G+ F I + + +++ AD +EA + A+Y+D G
Sbjct: 78 SKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAMEAVIAAIYLDSG 137
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
++A F F ++ + D K+ LQ+ C R L+ +P+Y+V++ GP
Sbjct: 138 LDAARTFIIGHFRSVIEQTVHEDSIQDYKTDLQEYC--QRELE----TLPVYQVMDQRGP 191
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ + + VAV + + + +G S ++AE AAK AL +
Sbjct: 192 DHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSR 230
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L +P EG L+ ++ +V LA +++ +G+ F+L G +L
Sbjct: 53 GDTVLGLVVAEYLMVTYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELT 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E +A+ EA++ A++LD G+D A
Sbjct: 113 QGREKSSLLADAMEAVIAAIYLDSGLDAA 141
>gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417886270|ref|ZP_12530417.1| ribonuclease III [Lactobacillus oris F0423]
gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341593768|gb|EGS36593.1| ribonuclease III [Lactobacillus oris F0423]
Length = 232
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLI 279
++++LQ YL + F+ RLLA FT S Y N N +R+EFLGD VL+LI
Sbjct: 1 MIEELQDYLAKEFDIHFSDPRLLAEAFTQAS--YVNEHPHQNLKFYERIEFLGDAVLELI 58
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA-- 337
S+Y+Y +PE +G L+ LR+++V + S + + + + + + R
Sbjct: 59 VSEYIYKRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGL 118
Query: 338 --DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
D+ E+F+GA+Y+D+G A E+F + FP+ L+ W D + D
Sbjct: 119 LCDIFESFVGALYLDQGRPAVEKFVRRVIFPK-----LDMGWFDHAVDAKTSLQEFLQRD 173
Query: 396 GGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G D+ I Y ++E G N+ ++ V V + +A G+S +QAEM AA+ AL+K
Sbjct: 174 G---DVLIEYHLLEESGTENNPAFHVDVAANGQVIADGQGSSKKQAEMQAAQRALKK 227
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +++ +P++ +G L RAA+V + AK + ++ HG +L
Sbjct: 51 GDAVLELIVSEYIYKRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G ++ V++
Sbjct: 111 GARQRPGLLCDIFESFVGALYLDQGRPAVEKFVRRVIF 148
>gi|365853510|ref|ZP_09393777.1| ribonuclease III [Lactobacillus parafarraginis F0439]
gi|363712135|gb|EHL95834.1| ribonuclease III [Lactobacillus parafarraginis F0439]
Length = 229
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 17/214 (7%)
Query: 245 LLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLR 300
LL FT S Y N N +RLEFLGD VLQLI S+Y++ +P+ +G L+ LR
Sbjct: 15 LLDEAFTQAS--YVNEHRDQNLKFYERLEFLGDAVLQLIVSEYIFTRYPKLPQGRLTRLR 72
Query: 301 SSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEAC 356
+++VN ++ S + + + + +DR D+ E+F+GA+Y+D+G +
Sbjct: 73 AAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVGALYLDQGKKVV 132
Query: 357 EQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSR 416
E F + FP+L + E+ D K++LQ+ + G DI Y++++ GP N R
Sbjct: 133 EGFVQQVIFPKLDEGMF-AEFFDHKTELQELA-----QEDGPVDID-YELVDEYGPENDR 185
Query: 417 SYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ V V ++ L G+S + AE AA+ AL+
Sbjct: 186 LFKVNVAIDHKVLGIGVGHSKKDAEQKAAQQALK 219
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S ++F +P + +G L RAA+V Q + A+ ++ G +
Sbjct: 44 GDAVLQLIVSEYIFTRYPKLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKA 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G V + V++
Sbjct: 104 GARDRDSLLCDIFESFVGALYLDQGKKVVEGFVQQVIF 141
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLYNH 287
L+ S G F I LL + FT S Y N + N+RLEFLGD VL+L S+YL+N
Sbjct: 7 LQESVGFDFQDIELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNK 64
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+P+ EGH++ +R+++V + + + + + + R AD+ E+F
Sbjct: 65 YPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFESF 124
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQ---YFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
+GA+Y+D G+E +F + FP++ Y E D K++LQ+ R D
Sbjct: 125 IGALYLDNGLEKVVKFLERVIFPKIDAGAYL----ETVDYKTQLQEIVQRDR-------D 173
Query: 401 IPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 174 VLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FE+ +GAL+LD G++ + V++
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGLEKVVKFLERVIF 146
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 25/238 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F + LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFYFEDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQ---YFILNQEWNDPKSKLQQCCLTLRTL 394
D+ E+F+GA+Y+D G+ F + FP++ Y E D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIAKVVTFLERIIFPKIDAGAYL----ETVDYKTQLQEIVQRDR-- 172
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 -----DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+A+ FE+ +GAL+LD GI
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGI 134
>gi|417003249|ref|ZP_11942320.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 236
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 18/235 (7%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITSD 282
LK+++ E G FN L+ FT S YTN G SN+RLEFLGD++L +I S+
Sbjct: 8 LKKIEEFENKIGYSFNDKELIDVAFTHSS--YTNEARGESKSNERLEFLGDSILDMIVSE 65
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVD----LKMKDRAD 338
L+ H+ EG L+ RS LV + + C M + N + + LK +AD
Sbjct: 66 ILFKHYNNKPEGWLTKTRSRLVCTSSFAKACEKFDMSSYLNFGKGEKEHGGHLKKHVKAD 125
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE--WNDPKSKLQQCCLTLRTLDG 396
EA A+Y+D E V + I+N + +ND K+KLQ+ +
Sbjct: 126 TFEAVCAAIYLDSSYEKLFDIL-VKNYKEEALVIINDDSIFNDYKTKLQEYH------NA 178
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ I Y++++ GP +++++T+AV N LA G + +QAE +AAK A K
Sbjct: 179 KDKKILKYELVKEEGPEHAKTFTMAVKLGNRILATGVGKNKKQAEQDAAKAAYNK 233
>gi|407477596|ref|YP_006791473.1| ribonuclease 3 [Exiguobacterium antarcticum B7]
gi|407061675|gb|AFS70865.1| Ribonuclease 3 [Exiguobacterium antarcticum B7]
Length = 269
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 240 FNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
F+++ LL + FT S + + G N+RLEFLGD VL+L S YL+ H+ EG L+
Sbjct: 55 FSNVDLLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQHYHLVDEGELTK 114
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYIDKG 352
LR+++V + N F I+ K + R AD+ EAF+GA+Y+D+G
Sbjct: 115 LRAAIVCEPSLVQFANH--YQFSEMILLGKGEELTGGRNRPALLADVFEAFIGALYLDQG 172
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
++A E+F FP++ +E D KS+LQ+ ++ + G+ + Y++IE GP
Sbjct: 173 IDAAERFLAEAVFPKVASGFF-EEQTDFKSQLQEA---IQRVGLGQIE---YEIIEERGP 225
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+SR + V+ ++ TG S ++AE AAK AL
Sbjct: 226 AHSREFISRVHVSDKLEGIGTGRSKKEAEQQAAKQAL 262
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF + ++EG L RAAIV L A + +L G +L
Sbjct: 88 GDAVLELTVSRYLFQHYHLVDEGELTKLRAAIVCEPSLVQFANHYQFSEMILLGKGEELT 147
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD GID A++ + ++
Sbjct: 148 GGRNRPALLADVFEAFIGALYLDQGIDAAERFLAEAVF 185
>gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S]
gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S]
Length = 245
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
+ FN+ LL + S Y+N G+N+RLEFLGD+VL LI +D+LY +P EG
Sbjct: 27 IDFNNFDLLNTALSHSS--YSNELDQKSGNNERLEFLGDSVLNLIITDHLYKTYPNKSEG 84
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
LS RS +V+ + S + +I + + + + +++ AD +EAF+GA+Y+D
Sbjct: 85 ELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLD 144
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G +F F ++ ++ D KS LQ+ + P YK+ + +
Sbjct: 145 SGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKIS------PSYKLDKEI 198
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 199 GPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 243
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+ +A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
K +A+ EA +GA++LD G +A +
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSIATE 152
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 11/209 (5%)
Query: 244 RLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSL 303
++L R T RS Y L +N+RLEFLGD+VL L+ +D L+ P+ EG L+ LR+++
Sbjct: 24 KILLRALTHRSYAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHPDLPEGQLAKLRAAV 83
Query: 304 VNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQF 359
VN R + V +G+ + + + +D+ AD LEA +GA+Y+D+G++ +F
Sbjct: 84 VNMRALADVARGLGVGAYIRLGRGEEGTGGRDKSSILADTLEAVIGAVYLDRGLDVASEF 143
Query: 360 CKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYT 419
F P + D K+ LQ+ LT + G +P Y V E GP + +++
Sbjct: 144 VHRLFDPLIATASGLGAGLDWKTSLQE--LTAAEMLG----VPEYHVDES-GPDHQKTFR 196
Query: 420 VAVYFKNERLAKATGNSIQQAEMNAAKVA 448
V E G S ++AE AA+ A
Sbjct: 197 ATVRVAGESYGLGEGRSKKEAEQQAAESA 225
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + LF PD+ EG LA RAA+V + LA +A+ +G+ ++ G +
Sbjct: 52 GDSVLGLVVTDTLFRKHPDLPEGQLAKLRAAVVNMRALADVARGLGVGAYIRLGRGEEGT 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EA++GA++LD G+DVA +
Sbjct: 112 GGRDKSSILADTLEAVIGAVYLDRGLDVASE 142
>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
Length = 229
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 20/241 (8%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITS 281
Q ++K ++ LE S F LL T +S + +N+RLEFLGD VL L+
Sbjct: 2 QGKMMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVG 57
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+YL++ F + EG LS LR++LVN ++ + + N + + F + + + K++ +
Sbjct: 58 EYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILS 117
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
D LEA +GA++++ G E + FP++ IL +++ K+KLQ+
Sbjct: 118 DALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------ 168
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
G P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K +
Sbjct: 169 QGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 228
Query: 455 I 455
+
Sbjct: 229 L 229
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 48 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 108 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 166
>gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13]
Length = 247
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
GV F++ +LL + FT S Y N N+RLEFLGD VL+L S +LY +P
Sbjct: 28 GVKFHNEKLLYQAFTHSS--YVNEHRRKPYEDNERLEFLGDAVLELTISQFLYKKYPMMS 85
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG L+ LR+S+V + ND+ + + + + R AD+ EAF+GA+Y
Sbjct: 86 EGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLADVFEAFIGALY 145
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D G+E QF + +P++ + D KS+LQ+ + R G + Y+V+E
Sbjct: 146 LDLGLETVFQFLEKYVYPKINEGAFSHVM-DFKSQLQE--MIQRNALG----VIEYEVLE 198
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP ++R + V E + G S ++AE +AA+ ALQK +
Sbjct: 199 EKGPAHNREFVSKVSLNKEEMGIGVGRSKKEAEQHAAQFALQKLKKV 245
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RA+IV L A + ++L G ++
Sbjct: 65 GDAVLELTISQFLYKKYPMMSEGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEIT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQH----- 206
+A+ FEA +GAL+LD G++ Q +Y K NE F M +
Sbjct: 125 GGRARPALLADVFEAFIGALYLDLGLETVFQFLEKYVYPKINEGAFSHVMDFKSQLQEMI 184
Query: 207 -----------PLQEQEPDGDRQWVEQSPLLKQ 228
L+E+ P +R++V + L K+
Sbjct: 185 QRNALGVIEYEVLEEKGPAHNREFVSKVSLNKE 217
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 25/238 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F + LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFYFEDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQ---YFILNQEWNDPKSKLQQCCLTLRTL 394
D+ E+F+GA+Y+D G+ F + FP++ Y E D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIAKVVTFLERIIFPKIDAGAYL----ETVDYKTQLQEIVQRDR-- 172
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 -----DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+A+ FE+ +GAL+LD GI
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGI 134
>gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c]
gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c]
Length = 319
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 14/211 (6%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD VLQL+ +D LYN P+ EG L+ R+S+V
Sbjct: 45 LLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRASVV 104
Query: 305 NNRTQSVVCNDIGMPFFANII---NPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACE 357
N+R + V IG + + +D+ AD LEA +GA+Y++ G+E
Sbjct: 105 NSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEVAA 164
Query: 358 QFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
Q F P L D K+ LQ+ L G PD V+ GP +++
Sbjct: 165 QLVHRYFDPLLDEAAGRGAGLDWKTSLQERTAELGM---GPPDY----VVTDSGPDHAKR 217
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T + + G S ++AE AA+ A
Sbjct: 218 FTARARISDRIYGEGEGGSKKEAEQRAAERA 248
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGS 149
G+ Q + + L++ PD+ EG LA RA++V ++ LA +A+ I G+ ++L G
Sbjct: 72 GDAVLQLVVTDALYNRHPDLPEGALAKQRASVVNSRALADVARVIGPKGIGPYLLLGKGE 131
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ + +A+ EAL+GA++L+ G++VA Q+
Sbjct: 132 ETTGGRDKASILADTLEALIGAVYLELGLEVAAQLV 167
>gi|417935021|ref|ZP_12578341.1| ribonuclease III [Streptococcus mitis bv. 2 str. F0392]
gi|340771591|gb|EGR94106.1| ribonuclease III [Streptococcus mitis bv. 2 str. F0392]
Length = 232
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVISETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|404493023|ref|YP_006717129.1| ribonuclease III [Pelobacter carbinolicus DSM 2380]
gi|90101632|sp|Q3A4Q8.1|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|77545087|gb|ABA88649.1| ribonuclease III [Pelobacter carbinolicus DSM 2380]
Length = 232
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 12/230 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYL 284
K LE + +F++ LL T +S + T N+RLEFLGD VL ++ S Y+
Sbjct: 5 KSAALLEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVSHYI 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL---- 340
+ FP EG L+ +RS +V+ + +V+ I + + + + + ++ LL
Sbjct: 65 FRTFPHLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLANTM 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA LGA++ D G ++ + + F P +Q + D K++LQ+ L D
Sbjct: 125 EALLGAVFCDGGFDSVRRVIEALFIPHIQRAARRKTGVDYKTRLQE------RLQARFGD 178
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+P Y +I GP + RSY+V +F+ + + G S + AE AAK AL+
Sbjct: 179 VPQYVLIHADGPPHQRSYSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALE 228
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S ++F FP + EG L R+ +V + L + K I L D+M G +
Sbjct: 52 GDAVLGVVVSHYIFRTFPHLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERS 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ +AN EAL+GA+F DGG D +V ++
Sbjct: 112 GGRQKSSLLANTMEALLGAVFCDGGFDSVRRVIEALF 148
>gi|417914953|ref|ZP_12558583.1| ribonuclease III [Streptococcus mitis bv. 2 str. SK95]
gi|342835607|gb|EGU69843.1| ribonuclease III [Streptococcus mitis bv. 2 str. SK95]
Length = 232
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI +GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVISEIGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116]
gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116]
Length = 245
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 16/233 (6%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYN 286
++LE S + FN+ LL + S Y+N G+N+RLEFLGD+VL LI +D+LY
Sbjct: 20 EFLENLS-IDFNNFDLLNTALSHSS--YSNELDQKSGNNERLEFLGDSVLNLIITDHLYK 76
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
+P EG LS RS +V+ + S + +I + + + + +++ AD +EA
Sbjct: 77 TYPNKSEGELSKARSYIVSEDSLSNIAREIDLGSYILLGRGEESNDGRNKKGILADAIEA 136
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D G +F F ++ ++ D KS LQ+ + P
Sbjct: 137 FVGAIYLDSGFSVATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYIQKKYKIS------P 190
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
YK+ + +GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 191 SYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 243
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+++A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREIDLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
K +A+ EA +GA++LD G VA +
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSVATE 152
>gi|339009341|ref|ZP_08641913.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
gi|338773819|gb|EGP33350.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
Length = 239
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 21/233 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLYNH 287
L+ G++F L+ + FT S Y N G N+RLEFLGD VL+L S +LY
Sbjct: 16 LQEKIGIVFTDESLMRQAFTHSS--YVNEQRGKRISDNERLEFLGDAVLELTVSQFLYKM 73
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLE 341
FP+ EG ++ LR+++V S+V + F ++ K + R AD+ E
Sbjct: 74 FPKMSEGEMTKLRAAIVCE--PSLVKFAELLQFGELVLLGKGEELTGGRQRPALLADVFE 131
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AF+GA+Y+D+G++A QF + +PR+ Q D KS+LQ+ ++ GE
Sbjct: 132 AFVGALYLDQGLDAVFQFLEKYVYPRIDKGEFTQ-VTDFKSQLQEL---VQQDSLGE--- 184
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
IY++++ GP ++R + V +L +G S ++AE AA +AL K +
Sbjct: 185 IIYRILQERGPAHNREFVSEVILNGNQLGVGSGRSKKEAEQRAAALALMKIET 237
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +FP + EG + RAAIV L A+ + + +L G +L
Sbjct: 58 GDAVLELTVSQFLYKMFPKMSEGEMTKLRAAIVCEPSLVKFAELLQFGELVLLGKGEELT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ +A+ FEA +GAL+LD G+D Q +Y
Sbjct: 118 GGRQRPALLADVFEAFVGALYLDQGLDAVFQFLEKYVY 155
>gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135]
gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135]
Length = 244
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
+ FN I LL + S Y N +N+RLEFLGD+VL LI +DYLY +PE EG
Sbjct: 26 IDFNDIDLLNMSLSHSS--YANEFDQKYANNERLEFLGDSVLNLIITDYLYRFYPEKSEG 83
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
LS RS +V+ + S + ++ + + + + + +++ AD +EAF+GA+Y+D
Sbjct: 84 ELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEAFVGALYLD 143
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G F F ++ ++ D KS LQ+ + P YK+ + +
Sbjct: 144 GGFLKTLDFVIELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKIS------PTYKLAKEL 197
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP +++ + V +Y ++ ++ G S ++AEM AA++AL+ +I
Sbjct: 198 GPDHNKVFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKNIANI 242
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + +L+ +P+ EG L+ R+ IV + L+ +A+ + L +++L G +
Sbjct: 61 GDSVLNLIITDYLYRFYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENN 120
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
K +A+ EA +GAL+LDGG
Sbjct: 121 DGRNKKGILADAIEAFVGALYLDGG 145
>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
Length = 232
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNH 287
L+ +E G F LLA T R+ Y N G NQRLEF GD VL + SD L
Sbjct: 9 LEGIEGRLGYRFRDRGLLAEALTHRT--YVNEAGGRDNQRLEFFGDAVLDFLLSDMLLVR 66
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAF 343
FP+ EG L+ +R++LV+ + + + D+G + + K AD EA
Sbjct: 67 FPDSREGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERGGGRQKRSLLADAFEAL 126
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
L A+Y+D G++ + + F P L L D K++LQ+ R + G ++P
Sbjct: 127 LAALYLDGGLDPARRVVEALFAPLLSSRDL-LSGRDAKTELQEKA---RLVKG---ELPR 179
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
Y++ E GP + + +TV VY E + + G S ++AE +AA+ A
Sbjct: 180 YQLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAARAA 224
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ S L FPD EG L RAA+V LA +A + L + G +
Sbjct: 51 GDAVLDFLLSDMLLVRFPDSREGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERG 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 188
+ + +A+ FEAL+ AL+LDGG+D A +V ++
Sbjct: 111 GGRQKRSLLADAFEALLAALYLDGGLDPARRVVEAL 146
>gi|333979683|ref|YP_004517628.1| ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823164|gb|AEG15827.1| Ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
Length = 243
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 108/213 (50%), Gaps = 12/213 (5%)
Query: 245 LLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
LL T S Y + G +NQRLEFLGD VL+L+ SDYLY +P H EG L+ LR++
Sbjct: 24 LLCLALTHSSYAYEKIFRGQENNQRLEFLGDAVLELVVSDYLYRTYPGHTEGELTRLRAA 83
Query: 303 LVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQ 358
+V + + D+G + + + + AD EA LGA+Y+D+G+E +
Sbjct: 84 IVCEPSLARTARELDLGSCLYMGRGEERSGGRERPSILADAFEALLGAVYLDQGLEMARK 143
Query: 359 FCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSY 418
P + + + D K++LQ+ + G+ DI Y ++ GP + + +
Sbjct: 144 VALQYLKPVIDDVLEGRVERDYKTELQEIL-----QEEGQVDIS-YAILREEGPDHHKIF 197
Query: 419 TVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T AVYF + + + G + ++AE AA AL +
Sbjct: 198 TAAVYFGGKEMGRGQGRTKKEAEQQAACRALAR 230
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ +P EG L RAAIV LA A+ + L + G +
Sbjct: 53 GDAVLELVVSDYLYRTYPGHTEGELTRLRAAIVCEPSLARTARELDLGSCLYMGRGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
E +A+ FEAL+GA++LD G+++A +V
Sbjct: 113 GGRERPSILADAFEALLGAVYLDQGLEMARKV 144
>gi|421872840|ref|ZP_16304457.1| ribonuclease III [Brevibacillus laterosporus GI-9]
gi|372458255|emb|CCF14006.1| ribonuclease III [Brevibacillus laterosporus GI-9]
Length = 229
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 21/233 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLYNH 287
L+ G++F L+ + FT S Y N G N+RLEFLGD VL+L S +LY
Sbjct: 6 LQEKIGIVFTDESLMRQAFTHSS--YVNEQRGKRISDNERLEFLGDAVLELTVSQFLYKM 63
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLE 341
FP+ EG ++ LR+++V S+V + F ++ K + R AD+ E
Sbjct: 64 FPKMSEGEMTKLRAAIVCE--PSLVKFAELLQFGELVLLGKGEELTGGRQRPALLADVFE 121
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AF+GA+Y+D+G++A QF + +PR+ Q D KS+LQ+ + GE
Sbjct: 122 AFVGALYLDQGLDAVFQFLEKYVYPRIDKGEFTQ-VTDFKSQLQELV---QQDSLGE--- 174
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
IY++++ GP ++R + V +L +G S ++AE AA +AL K +
Sbjct: 175 IIYRILQERGPAHNREFVSEVILNGNQLGVGSGRSKKEAEQRAAALALMKIET 227
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +FP + EG + RAAIV L A+ + + +L G +L
Sbjct: 48 GDAVLELTVSQFLYKMFPKMSEGEMTKLRAAIVCEPSLVKFAELLQFGELVLLGKGEELT 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ +A+ FEA +GAL+LD G+D Q +Y
Sbjct: 108 GGRQRPALLADVFEAFVGALYLDQGLDAVFQFLEKYVY 145
>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 20/241 (8%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITS 281
QS +K ++ LE S F LL T +S + +N+RLEFLGD VL L+
Sbjct: 21 QSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVG 76
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+YL++ F + EG LS LR++LVN ++ + + N + + F + + + K++ +
Sbjct: 77 EYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILS 136
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
D LEA +GA++++ G E + FP++ IL +++ K+KLQ+
Sbjct: 137 DALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------ 187
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
G P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K +
Sbjct: 188 QGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247
Query: 455 I 455
+
Sbjct: 248 L 248
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 67 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 126
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 127 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 185
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F + LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+YL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>gi|189043297|sp|A8Z6F6.1|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
Length = 223
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 125/236 (52%), Gaps = 22/236 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ E + G F LL T +S T L +N+RLEFLGD V+ L+ ++YL+
Sbjct: 1 MKNLEEFERNLGYKFKKSELLEEALTHKS---TKQAL-NNERLEFLGDAVMDLLVAEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
F + EG +S LR++LVN ++ + + + M F + + + +++ +D E
Sbjct: 57 KKFSKIAEGDMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFE 116
Query: 342 AFLGAMYIDKGM----EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
A +GA+Y++ G+ E ++C +P++ + L +++ ++ Q L +
Sbjct: 117 AVMGAIYLEAGLLKVREISISLLELC-YPQIDFAHLEKDYKTALQEVTQATLGV------ 169
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
IP Y++I GP + + + +A+ + +++A G+S +QA+ AAK+AL+K
Sbjct: 170 ---IPTYELIGSFGPDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEKIK 222
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 54/97 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +LF F I EG ++ RAA+V + A++A+R+ + +F+ + +
Sbjct: 43 GDAVMDLLVAEYLFKKFSKIAEGDMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +++ FEA+MGA++L+ G+ ++ S+L
Sbjct: 103 GGREKDSILSDAFEAVMGAIYLEAGLLKVREISISLL 139
>gi|363889235|ref|ZP_09316599.1| ribonuclease III [Eubacteriaceae bacterium CM5]
gi|361966837|gb|EHL19719.1| ribonuclease III [Eubacteriaceae bacterium CM5]
Length = 233
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 10/224 (4%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
+E + G IF + L+ T S N N+RLEFLGD++L L+ S+Y++N+
Sbjct: 11 IEKNIGYIFENKGLIKTALTHSSYVNENKNSRDNERLEFLGDSILSLVVSNYIFNYKSNL 70
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG L+ +R+S V ++ V N + + + + + + K R AD EA + A+
Sbjct: 71 KEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKGEQNSGGKKRTSILADATEAIIAAI 130
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D +E ++ + + I +++ +D KSKLQ+ ++ + G + Y+V+
Sbjct: 131 YLDSDLETVSKYVILWLEDTIVSAIKHKKDSDYKSKLQE---EIQKVKG---RVLKYEVV 184
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ GP + R +T+ VY N+ + K GNS ++AE NAA+ AL K
Sbjct: 185 DVEGPDHDRKFTICVYCDNKLIGKGQGNSKKEAEQNAAQDALSK 228
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S ++F+ +++EG L RA+ V + L ++A ++ + D++ G
Sbjct: 51 GDSILSLVVSNYIFNYKSNLKEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKGEQNS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA---------DQVFSSVLYKDN---------E 194
+ +A+ EA++ A++LD ++ D + S++ +K + E
Sbjct: 111 GGKKRTSILADATEAIIAAIYLDSDLETVSKYVILWLEDTIVSAIKHKKDSDYKSKLQEE 170
Query: 195 VRFKQWMYYPQHPLQEQEPDGDRQWV 220
++ + + + PD DR++
Sbjct: 171 IQKVKGRVLKYEVVDVEGPDHDRKFT 196
>gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 243
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 15/215 (6%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F ++LA T +S + N+R+EFLGD++L I ++ LY +P EG LS
Sbjct: 17 FGDPKILATALTHKSYAAETVGENYNRRMEFLGDSILSAIVAETLYLRYPRESEGKLSQF 76
Query: 300 RSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEA 355
++ +++ S D+G + + + ++ D+ EA +GA+Y+D G E
Sbjct: 77 KAQIISAHNLSSWAREMDLGGCIYLGKSEDTKEARQRESLLCDVFEAVIGAIYLDGGFEN 136
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNS 415
++F V F Q I E D KS+LQ+ ++ ++P YKVI+ GP ++
Sbjct: 137 AKKF--VLRFLNDQKEI---EITDYKSRLQEILQSIY------KELPEYKVIKESGPDHN 185
Query: 416 RSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ + VAVY K+E L K GNS ++A+ AAK A++
Sbjct: 186 KKFEVAVYIKSELLGKGAGNSKKEAQQFAAKQAMK 220
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + L+ +P EG L+ ++A I+ +L+ A+ + L + D
Sbjct: 49 GDSILSAIVAETLYLRYPRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGKSEDTK 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQ 209
+ + + + FEA++GA++LDGG + A + L E+ + Q LQ
Sbjct: 109 EARQRESLLCDVFEAVIGAIYLDGGFENAKKFVLRFLNDQKEIEITDYKSRLQEILQ 165
>gi|406927413|gb|EKD63451.1| hypothetical protein ACD_51C00278G0004 [uncultured bacterium]
Length = 239
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 123/237 (51%), Gaps = 22/237 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSD 282
+ + Q LE G+ F LL + F +S Y N N+RLEFLGD VL+L+ ++
Sbjct: 1 MTKYQNLEKLIGIKFKDEHLLDQAFIHKS--YVNEASEDKEHNERLEFLGDAVLELVVTE 58
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
+LY + ++ EG L+ RS+LV + + +G+ + + + +++ A+
Sbjct: 59 FLYKTY-KNPEGDLTNWRSALVRGANLAEIAKKLGLNKYLYLGRGEEKSGGREKGYILAN 117
Query: 339 LLEAFLGAMYIDKGMEACEQFCK---VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
+EA +GA+Y+DKG + +F VC+ + + + D KSK Q+ + +
Sbjct: 118 TVEALIGAIYLDKGYKDAHKFITKFIVCYLGEI---LEKGSYIDSKSKFQEISQSKFNI- 173
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
P+Y++IE GP + +S+ + VY ++ + +G+S QQAE NAA AL+K
Sbjct: 174 -----TPVYQLIEESGPDHDKSFKMGVYIGDKMYGEGSGSSKQQAEQNAAGDALKKT 225
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + + L+ + + EG L +R+A+V+ +LA +AK++GL ++ G +
Sbjct: 48 GDAVLELVVTEFLYKTYKN-PEGDLTNWRSALVRGANLAEIAKKLGLNKYLYLGRGEEKS 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + +AN EAL+GA++LD G A + + +
Sbjct: 107 GGREKGYILANTVEALIGAIYLDKGYKDAHKFITKFI 143
>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
Length = 224
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL T +S + N+RLEFLGD VL LI ++LY FP EG L
Sbjct: 11 GYHFKNQNLLKEALTHKSAKKST----HNERLEFLGDAVLDLIIGEFLYKKFPSSPEGEL 66
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMYIDKG 352
S +R+S+VN + + + +G+ + I + + +D+ +L EA +GA+Y++ G
Sbjct: 67 SKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAIIGAIYLESG 126
Query: 353 MEACEQFC-KV--CFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
+E ++ K+ +P++ + + D K+ LQ+ L + IP Y V++
Sbjct: 127 LEKVQKIVLKILEILYPKID---IQHLFYDHKTSLQELTQALFGV------IPEYVVLDS 177
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP +++ + + V+ + + A A+G S ++A+ N AK+AL+
Sbjct: 178 KGPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALE 218
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 53/97 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I L+ FP EG L+ RA++V + A +A+ +G+ +++ +H +
Sbjct: 42 GDAVLDLIIGEFLYKKFPSSPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQN 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
H + ++N FEA++GA++L+ G++ ++ +L
Sbjct: 102 HGRDKDSILSNAFEAIIGAIYLESGLEKVQKIVLKIL 138
>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 236
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 11/217 (5%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL + T S N SN+RLEFLGD VL +I SDYLY P + EG L
Sbjct: 21 GYSFKKMLLLEKALTHTSCRVENNF--SNERLEFLGDAVLGMIISDYLYKTMPHYSEGEL 78
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANI---INPKVDLKMKDRADLLEAFLGAMYIDKGM 353
+ ++S +V+ T + V + G+ F + +N + A++ EA + A+YID G+
Sbjct: 79 TNVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLNDRDLFPKSLLANVFEALIAAIYIDGGI 138
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
EA +F + NQ + KS LQQ + P Y++++ +GP
Sbjct: 139 EAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYGI------TPTYRLLQQIGPD 192
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ +S+ + V K + G S ++AE +AAK AL+
Sbjct: 193 HGKSFEIVVSIKGSEYGRGWGKSKKEAEQSAAKEALK 229
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I S +L+ P EG L ++ +V LA + GL++F+L G +
Sbjct: 54 GDAVLGMIISDYLYKTMPHYSEGELTNVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLN-D 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
++ K +AN FEAL+ A+++DGGI+ A + L K+
Sbjct: 113 RDLFPKSLLANVFEALIAAIYIDGGIEAASEFTLRYLKKE 152
>gi|340355030|ref|ZP_08677724.1| ribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622827|gb|EGQ27340.1| ribonuclease III [Sporosarcina newyorkensis 2681]
Length = 255
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 31/243 (12%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 282
++ + L+ GV F LL FT S Y N N+RLEFLGD VL+L S
Sbjct: 22 EKFKALQQQLGVQFKDENLLFNAFTHSS--YVNEHRRKKFSDNERLEFLGDAVLELGVSK 79
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDI----------GMPFFANIINPKVDLK 332
+L+ P EG L+ LR+++V + N++ G + P +
Sbjct: 80 FLFRTEPTKSEGELTKLRAAIVCEPSLVKFSNELHFGDYILLGKGEELTGGRMRPAL--- 136
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
AD+ EA++GA+Y+D+GME E+F K FP++ + D KS+LQ+ ++
Sbjct: 137 ---LADVFEAYIGALYLDQGMEVVEEFLKRIVFPKISVGAFSH-VTDYKSRLQEL---VQ 189
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ G P+ Y+V+E GP +++ + V +++L K G S ++AE AA+ A+++
Sbjct: 190 QKNHG----PLQYEVVEEKGPAHAKKFVTVVNLDDQQLGKGIGKSKKEAEQEAARRAIEQ 245
Query: 452 CPS 454
S
Sbjct: 246 LQS 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF P EG L RAAIV L + + D++L G +L
Sbjct: 69 GDAVLELGVSKFLFRTEPTKSEGELTKLRAAIVCEPSLVKFSNELHFGDYILLGKGEELT 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD G++V ++ +++
Sbjct: 129 GGRMRPALLADVFEAYIGALYLDQGMEVVEEFLKRIVF 166
>gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379705722|ref|YP_005204181.1| Ribonuclease III [Streptococcus infantarius subsp. infantarius
CJ18]
gi|171281466|gb|EDT46901.1| ribonuclease III [Streptococcus infantarius subsp. infantarius ATCC
BAA-102]
gi|374682421|gb|AEZ62710.1| Ribonuclease III [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 228
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 19/227 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
L+ G+ F LL FT S Y N L + N+RLEFLGD VLQL+ S YL+
Sbjct: 8 LQRDFGIAFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISQYLFKK 65
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+P+ EG LS +RS +V + + G F + N + ++R DL EAF
Sbjct: 66 YPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILGDLFEAF 125
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+ +D+G+EA +F P+++ + D K+ LQ+ G D+ I
Sbjct: 126 LGALLMDQGVEAVNKFLNQVMIPQVEKGNF-ERVKDYKTTLQELL-------QGHSDVTI 177
Query: 404 -YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+V GP +++ + V VY +E +K G S + AE +AAK AL
Sbjct: 178 DYRVSSESGPAHAKVFEVTVYVNDEAKSKGIGKSKKLAEQDAAKNAL 224
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G ++F+ +G +
Sbjct: 50 GDAVLQLLISQYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL +D G++ ++ + V+ K N R K + Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus marinus MC-1]
gi|189043326|sp|A0L633.1|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus marinus MC-1]
Length = 246
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 113/232 (48%), Gaps = 16/232 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS------NQRLEFLGDTVLQLITSD 282
L+ LE + F LL T RS G N+RLEFLGD+VL LI S
Sbjct: 10 LERLEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGDSVLNLIVSH 69
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
LY F E EG LS R+ LVN R+ S V D+ + + + + +++ +
Sbjct: 70 RLYKRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGGREKYSILGN 129
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
LEA LGA+Y+D G EA E+ F ++ Q+ D K+ LQ+ L R GE
Sbjct: 130 ALEALLGAIYLDGGFEAAERVVDRLFAHQVAGIEPEQQGKDYKTLLQE-YLQAR----GE 184
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+PIY V+ GP + R + V+ + + + G S ++AE +AA+ AL+
Sbjct: 185 A-LPIYAVLSAEGPPHERVFVVSCHPREQLCGHGQGRSKREAEQHAAQQALE 235
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S L+ F ++ EG L+ +RA +V + L+ +AK + L ++ G
Sbjct: 59 GDSVLNLIVSHRLYKRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKS 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 188
E + N EAL+GA++LDGG + A++V +
Sbjct: 119 GGREKYSILGNALEALLGAIYLDGGFEAAERVVDRL 154
>gi|406586296|ref|ZP_11061229.1| ribonuclease III [Streptococcus sp. GMD1S]
gi|419816814|ref|ZP_14340987.1| ribonuclease III [Streptococcus sp. GMD4S]
gi|404466848|gb|EKA12142.1| ribonuclease III [Streptococcus sp. GMD4S]
gi|404474245|gb|EKA18563.1| ribonuclease III [Streptococcus sp. GMD1S]
Length = 232
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKDRFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVISETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+ + FEA +GAL LD +
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDV 135
>gi|363892437|ref|ZP_09319605.1| ribonuclease III [Eubacteriaceae bacterium CM2]
gi|363893925|ref|ZP_09321018.1| ribonuclease III [Eubacteriaceae bacterium ACC19a]
gi|402839311|ref|ZP_10887803.1| ribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361963192|gb|EHL16275.1| ribonuclease III [Eubacteriaceae bacterium ACC19a]
gi|361964387|gb|EHL17431.1| ribonuclease III [Eubacteriaceae bacterium CM2]
gi|402270517|gb|EJU19778.1| ribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 233
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 10/224 (4%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
+E + G +F + L+ T S N N+RLEFLGD++L L+ S+Y++N+
Sbjct: 11 IEKNIGYVFENKGLIKTALTHSSYVNENKNSRDNERLEFLGDSILSLVVSNYIFNYKSNL 70
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG L+ +R+S V ++ V N + + + + + + K R AD EA + A+
Sbjct: 71 KEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKGEQNSGGKKRTSILADATEAIIAAI 130
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D +E ++ + + I +++ +D KSKLQ+ ++ + G + Y+V+
Sbjct: 131 YLDSDLETVSKYVILWLEDTIVSAIKHKKDSDYKSKLQE---EIQKVKG---RVLKYEVV 184
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ GP + R +T+ VY N+ + K GNS ++AE NAA+ AL K
Sbjct: 185 DVEGPDHDRKFTICVYCDNKLIGKGQGNSKKEAEQNAAQDALSK 228
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S ++F+ +++EG L RA+ V + L ++A ++ + D++ G
Sbjct: 51 GDSILSLVVSNYIFNYKSNLKEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKGEQNS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA---------DQVFSSVLYKDN---------E 194
+ +A+ EA++ A++LD ++ D + S++ +K + E
Sbjct: 111 GGKKRTSILADATEAIIAAIYLDSDLETVSKYVILWLEDTIVSAIKHKKDSDYKSKLQEE 170
Query: 195 VRFKQWMYYPQHPLQEQEPDGDRQWV 220
++ + + + PD DR++
Sbjct: 171 IQKVKGRVLKYEVVDVEGPDHDRKFT 196
>gi|384085608|ref|ZP_09996783.1| ribonuclease 3 [Acidithiobacillus thiooxidans ATCC 19377]
Length = 226
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+ L L+ G F + LL + T RS G + N+RLEFLGD L + + L+
Sbjct: 1 MGSLDILQKRLGYRFAEMGLLTQALTHRSAGSAH-----NERLEFLGDAALNFVVAARLF 55
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP---KVDLKMKD--RADLL 340
FP+ EG LS +R+ LV T + + +I + + I+ P + +D RAD L
Sbjct: 56 GRFPKVSEGDLSRMRARLVREETLAEIAGEIALADYL-ILGPGEVRSGGARRDSIRADAL 114
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA ++D G A E PR+ + + E DPK++LQ+ L G
Sbjct: 115 EAVIGAAFLDGGFSAAEGIVLKLLEPRITDQLGDAELRDPKTRLQEF------LQGRGRP 168
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+PIY +IE G + R + +A S ++AE AA + L
Sbjct: 169 LPIYTLIEEKGQAHERRFVARCSVPGIEPTEAEDGSRRKAEQQAATLML 217
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + LF FP + EG L+ RA +V+ + LA +A I L D+++ G
Sbjct: 42 GDAALNFVVAARLFGRFPKVSEGDLSRMRARLVREETLAEIAGEIALADYLILGPGEVRS 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKDNEVRFKQW 200
A+ EA++GA FLDGG A+ + +L +D + R +++
Sbjct: 102 GGARRDSIRADALEAVIGAAFLDGGFSAAEGIVLKLLEPRITDQLGDAELRDPKTRLQEF 161
Query: 201 MYYPQHPL 208
+ PL
Sbjct: 162 LQGRGRPL 169
>gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23]
gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
gi|423335539|ref|ZP_17313314.1| ribonuclease III [Lactobacillus reuteri ATCC 53608]
gi|189043324|sp|A5VKP2.1|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|229564353|sp|B2G826.1|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016]
gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23]
gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
gi|337728769|emb|CCC03888.1| ribonuclease III [Lactobacillus reuteri ATCC 53608]
Length = 233
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITS 281
++++LQ YL + F++ LLA FT S + N L +R+EFLGD VL+LI S
Sbjct: 1 MIEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA---- 337
+Y+Y FPE +G L+ LR+++V + S + + + + + ++R
Sbjct: 61 EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D+G A E+F + FP+ L+ W D + DG
Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPK-----LDMGWFDHAVDAKTSLQEFLQRDG- 174
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
DI I Y ++E G N + V V + + + G+S + AEM AA+ AL
Sbjct: 175 --DIAIEYHLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQAL 225
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +++ FP++ +G L RAA+V + AK + ++ HG ++
Sbjct: 51 GDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E + + FE+ +GAL+LD G ++ V++
Sbjct: 111 GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIF 148
>gi|89094542|ref|ZP_01167480.1| ribonuclease III [Neptuniibacter caesariensis]
gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92]
Length = 226
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 16/230 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
++K + L G F+ + L T RS G N N+RLEFLGD++L + +D L
Sbjct: 1 MIKPVNELARRIGHDFSDLSLFELALTHRSCGKKN-----NERLEFLGDSILNFVIADDL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y FP+ EG LS LR+ +V T S V ++G+ + + + ++ R AD +
Sbjct: 56 YARFPKAKEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKSGGFRRDSILADAV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+Y+D M+ + F RL LN+ D K++LQ+ + R
Sbjct: 116 EAIIGAIYLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEFLQSRRLA------ 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
+P Y++ G +++++ + AK TG+S +QAE AAK AL
Sbjct: 170 LPEYELTNVEGEAHAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAAKNAL 219
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+ FP +EG L+ RA +V+ L+ +A+ +GL D++ G
Sbjct: 43 GDSILNFVIADDLYARFPKAKEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA--------DQVFSSV----LYKDNEVRFKQW 200
+A+ EA++GA++LD +D A +Q S++ KD++ R +++
Sbjct: 103 GGFRRDSILADAVEAIIGAIYLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEF 162
Query: 201 MYYPQHPLQEQE 212
+ + L E E
Sbjct: 163 LQSRRLALPEYE 174
>gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 233
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
QYL + F + LLA FT S Y N L +R+EFLGD VLQL S+Y+Y
Sbjct: 7 QYLADEFDIHFQNPDLLAEAFTQAS--YVNEHPEQHLKYYERIEFLGDAVLQLFVSEYIY 64
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
+PE +G L+ LR+++V + S + + + + ++R D+ E
Sbjct: 65 RRYPELLQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRPGLLCDIFE 124
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
+F+GA+Y+D+G +A E+F FP+L + D K+ LQ+ G+ DI
Sbjct: 125 SFIGALYLDQGRDAVERFIHRVIFPKLDMGWFDHAV-DTKTSLQEFLQR-----DGDVDI 178
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y +++ G N+ + V V + LA+ TG+S + AEM+AA AL+K
Sbjct: 179 E-YHLLDETGSENAPEFKVNVSADGQVLAQGTGSSKKHAEMDAAAQALKK 227
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P++ +G L RAA+V + AK + ++ G ++
Sbjct: 51 GDAVLQLFVSEYIYRRYPELLQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FE+ +GAL+LD G D ++ V++
Sbjct: 111 GARNRPGLLCDIFESFIGALYLDQGRDAVERFIHRVIF 148
>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
gi|90101623|sp|Q3Z7Q8.1|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
Length = 237
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 120/231 (51%), Gaps = 16/231 (6%)
Query: 229 LQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L LE S GV F ++ LL A + T+ N GSN+R+EFLGD VL +I +D LY+
Sbjct: 4 LTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYH 63
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLL 340
FP+ EG L+ RS LV R +S+V +G+ + + + K R A
Sbjct: 64 DFPDIQEGDLTRFRSLLV--RRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGAF 121
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA L A+Y+DKG++A + F ++ D KS+LQ+ L
Sbjct: 122 EAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQL------ 175
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y++I+ GP ++ + VY +++ LA+ +G S ++AE +AAK ALQ+
Sbjct: 176 TPRYRIIDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
I + L+H FPDI+EG L +R+ +V+ + L +A I L ++ G D
Sbjct: 56 IFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPA 115
Query: 160 AMANCFEALMGALFLDGGIDVADQV 184
+A FEA++ A++LD GID +V
Sbjct: 116 NLAGAFEAVLAAIYLDKGIDATREV 140
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 29/240 (12%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F + LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFQDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
+YL+N +P+ EGH++ +R+++V S+V + F I K + K R
Sbjct: 59 NYLFNKYPDMAEGHMTKMRAAIVCE--PSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPAL 116
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRL---QYFILNQEWNDPKSKLQQCCLTLR 392
AD+ E+F+GA+Y+D G++ F + FP++ +Y + D K++LQ+ R
Sbjct: 117 LADVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGEYL----QTVDYKTQLQEIVQRDR 172
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 -------DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ I ++ G +
Sbjct: 49 GDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FE+ +GAL+LD GID V++
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIF 146
>gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH]
gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH]
Length = 243
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
+ FN I LL + S Y N +N+RLEFLGD+VL LI +DYLY +PE EG
Sbjct: 25 IDFNDIDLLNMSLSHSS--YANEFDQKYANNERLEFLGDSVLNLIITDYLYKFYPEKSEG 82
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
LS RS +V+ + S + ++ + + + + + +++ AD +EAF+GA+Y+D
Sbjct: 83 ELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGIIADAIEAFVGALYLD 142
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G F F ++ ++ D KS LQ+ + P Y++ + +
Sbjct: 143 GGFLKASAFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKIS------PNYRLAKEL 196
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP +++ + V +Y ++ ++ G S ++AEM AA++AL+ +I
Sbjct: 197 GPDHNKIFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKTIANI 241
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + +L+ +P+ EG L+ R+ IV + L+ +A+ + L +++L G +
Sbjct: 60 GDSVLNLIITDYLYKFYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENN 119
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
K +A+ EA +GAL+LDGG
Sbjct: 120 DGRNKKGIIADAIEAFVGALYLDGG 144
>gi|297617466|ref|YP_003702625.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
gi|297145303|gb|ADI02060.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
Length = 232
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 114/210 (54%), Gaps = 11/210 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL + T S N + +NQRLEFLGD VL ++ ++YLY +FPE EG L+ +R+ +V
Sbjct: 24 LLTKALTHPSYSQENEAVENNQRLEFLGDAVLNMVVAEYLYKNFPERPEGDLTRIRAKVV 83
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
+ V N + + + + + + R AD +EA +GA+Y+D+G+E F
Sbjct: 84 CEKALVKVANTLKVGEYLYLGRGEELSGGRKRNSILADTVEAVVGAVYLDQGLEYARDFI 143
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
+ + + + + + D KS+LQ+ + G+ ++ Y ++E GP + +++
Sbjct: 144 -LRYLAQDIHEVAEGNFYDYKSQLQELVQSR-----GKDNV-TYAILEESGPAHDKTFIA 196
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
V+++++ LA+ G S ++AE AA+ LQ
Sbjct: 197 GVFYRHKLLAQGVGKSKKEAEQKAAEKVLQ 226
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L+ FP+ EG L RA +V + L +A + + +++ G +L
Sbjct: 51 GDAVLNMVVAEYLYKNFPERPEGDLTRIRAKVVCEKALVKVANTLKVGEYLYLGRGEELS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
+ +A+ EA++GA++LD G++ A L +D
Sbjct: 111 GGRKRNSILADTVEAVVGAVYLDQGLEYARDFILRYLAQD 150
>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 234
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 12/231 (5%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
S K L LE GV F+ L R T S + S +RLEFLGD VL L+ +D
Sbjct: 2 SARTKPLAELEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVAD 61
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF----ANIINPKVDLKMKDRAD 338
L+ FP EG LSL +SLVN T + V ++IG+ F ++ RAD
Sbjct: 62 KLFEMFPNADEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRAD 121
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
L+E+ + A+Y++ G++ F + + RL + + DPK+ LQ+ G E
Sbjct: 122 LMESLIAAIYLNSGLDDARAFIESHWGERLNKSVAAR--RDPKTALQEWAHQR----GPE 175
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
P P Y+V++ GP ++ + + V ++ G+S + AE +AA L
Sbjct: 176 P--PKYEVVDRSGPDHNPKFRIKVSIAGVDPSEGEGSSKRLAEQSAATAML 224
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDL- 151
G+ + + LF +FP+ +EG L+ ++V + A +A IGL +F+ G DL
Sbjct: 51 GDRVLGLVVADKLFEMFPNADEGELSLRLNSLVNAETCAAVADEIGLYEFVR--QGGDLR 108
Query: 152 -CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS----------VLYKDNEVRFKQW 200
K A+ E+L+ A++L+ G+D A S +D + ++W
Sbjct: 109 KLAASRTKSIRADLMESLIAAIYLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEW 168
Query: 201 MYY--PQHPLQE 210
+ P+ P E
Sbjct: 169 AHQRGPEPPKYE 180
>gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015]
gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015]
Length = 225
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L L+ + F++ LL T RS TN N+RLEFLGD++L + L+ F
Sbjct: 2 LSTLQSTLNYTFSNGDLLEVAVTHRSASKTN-----NERLEFLGDSILNFTVAAELFERF 56
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
PE EG LS LR+SLV+ + + + + F + ++ R AD +EA +
Sbjct: 57 PERPEGDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAII 116
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D G+E+ +QF + + + E D K++LQ+ L G +P Y
Sbjct: 117 GAIYLDGGIESAQQFIRDLYDGDFESLPTANELKDAKTRLQEW------LQGRHYALPQY 170
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERL-AKATGNSIQQAEMNAAKVAL 449
+++E G + + +TV+ Y + + ATG S ++AE AA+ AL
Sbjct: 171 EMVEVSGKPHEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAAETAL 216
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Query: 62 QAYCNYTIFVGVVLFVI------SVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEG 115
Q+ NYT G +L V S R+ G++ F + LF FP+ EG
Sbjct: 6 QSTLNYTFSNGDLLEVAVTHRSASKTNNERLEFL---GDSILNFTVAAELFERFPERPEG 62
Query: 116 GLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLD 175
L+ RA++V LA AK++ L F+ G +A+ EA++GA++LD
Sbjct: 63 DLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGAIYLD 122
Query: 176 GGIDVADQVFSSVLY-------------KDNEVRFKQWMYYPQHPLQEQE 212
GGI+ A Q F LY KD + R ++W+ + L + E
Sbjct: 123 GGIESAQQ-FIRDLYDGDFESLPTANELKDAKTRLQEWLQGRHYALPQYE 171
>gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly]
gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1]
gi|386859939|ref|YP_006272645.1| ribonuclease 3 [Borrelia crocidurae str. Achema]
gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly]
gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1]
gi|384934820|gb|AFI31493.1| Ribonuclease 3 [Borrelia crocidurae str. Achema]
Length = 243
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
+ FN I LL + S Y N +N+RLEFLGD+VL LI +DYLY +P+ EG
Sbjct: 25 IDFNDIYLLNMSLSHSS--YANEFDQKYANNERLEFLGDSVLNLIITDYLYKFYPDKSEG 82
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
LS RS +V+ + S + ++ + + + + + +++ AD +EAF+GA+Y+D
Sbjct: 83 ELSKARSYIVSEDSLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEAFVGALYLD 142
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G F F ++ ++ D KS LQ+ + P YK+ + +
Sbjct: 143 GGFSKASTFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKIS------PSYKLAKEL 196
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP +++ + V +Y ++ ++ G S ++AEM AA++AL+ +I
Sbjct: 197 GPDHNKIFCVELYVNDKFVSNGKGKSKKEAEMIAAEMALKNIVNI 241
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + +L+ +PD EG L+ R+ IV L+ +A+ + L +++L G +
Sbjct: 60 GDSVLNLIITDYLYKFYPDKSEGELSKARSYIVSEDSLSSIARELNLGNYILLGRGEENN 119
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
K +A+ EA +GAL+LDGG A
Sbjct: 120 DGRNKKGILADAIEAFVGALYLDGGFSKA 148
>gi|344199888|ref|YP_004784214.1| ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
gi|343775332|gb|AEM47888.1| Ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
Length = 226
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 15/225 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ L+ S G F LL++ T RS G + N+RLEFLGD L + + LY F
Sbjct: 4 LEGLQKSVGYHFREQSLLSQALTHRSAGAQH-----NERLEFLGDAALNFVVAAKLYARF 58
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF----ANIINPKVDLKMKDRADLLEAFL 344
P+ EG LS +R+ LV T + + I + F + I + RAD LEA +
Sbjct: 59 PKVSEGDLSRMRARLVREETLAEIAGKIALADFLILGSGEIRSGGARRDSIRADALEAVI 118
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA ++D G A E P + + +E DPK++LQ+ L G +PIY
Sbjct: 119 GAAFLDGGFAAAEDIVAQLVEPLMTDHLSGEELRDPKTRLQEF------LQGQGRPLPIY 172
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
++ G + R + +A S ++AE AA + L
Sbjct: 173 ALVAEKGQAHERRFVARCNVPGTEATEAEDGSRRKAEQQAAALML 217
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + L+ FP + EG L+ RA +V+ + LA +A +I L DF++ G
Sbjct: 42 GDAALNFVVAAKLYARFPKVSEGDLSRMRARLVREETLAEIAGKIALADFLILGSGEIRS 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKDNEVRFKQW 200
A+ EA++GA FLDGG A+ + + ++ +D + R +++
Sbjct: 102 GGARRDSIRADALEAVIGAAFLDGGFAAAEDIVAQLVEPLMTDHLSGEELRDPKTRLQEF 161
Query: 201 MYYPQHPL 208
+ PL
Sbjct: 162 LQGQGRPL 169
>gi|389575595|ref|ZP_10165623.1| ribonuclease III [Eubacterium cellulosolvens 6]
gi|389311080|gb|EIM56013.1| ribonuclease III [Eubacterium cellulosolvens 6]
Length = 228
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 27/236 (11%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITS 281
+K+L+ LE +G +FN I L + S Y N G N+RLEFLGD VL+L++S
Sbjct: 1 MKKLRELEQKTGHVFNDISWLKLAMSHSS--YANEQHLGHRGCNERLEFLGDAVLELVSS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+YLY+ +PE EG L+ LR+SLV T + IG+P + + + + R +
Sbjct: 59 EYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVS 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE----WNDPKSKLQQCCLTLRT 393
D LEA +GA++ D G E ++F L+Y + + E ++D K++LQ+ ++
Sbjct: 119 DALEATIGAIFKDGGFEEAKKFI-------LRYIMNDVENKQLFHDSKTRLQEMIQSVTD 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+ Y+++ GP + + + V ++ L + TG+S + AE AA A+
Sbjct: 172 ------EELSYQIVAESGPDHEKVFEAEVRLGDKLLGRGTGHSKKAAEQQAAYKAI 221
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + ++S +L+ +P++ EG L RA++V LA+ A+ IGL +++L G D
Sbjct: 49 GDAVLELVSSEYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDAT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ +++ EA +GA+F DGG + A + + Y N+V KQ + + LQE
Sbjct: 109 GGRKRDSVVSDALEATIGAIFKDGGFEEAKKFI--LRYIMNDVENKQLFHDSKTRLQE 164
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFL 271
D++ + KQ + + G+ F + +LL + FT S Y N N+RLEFL
Sbjct: 6 DKERKSFRAIEKQFKEFQTEIGIQFENEKLLKQAFTHSS--YVNEHRRKPYEDNERLEFL 63
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+L S +LY +P EG L+ LR+++V S+V + F + ++ K +
Sbjct: 64 GDAVLELTVSKFLYLKYPMMSEGELTKLRAAVVCE--PSLVSFAHALSFGSLVLLGKGEE 121
Query: 332 KMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
R AD+ EAF+GA+Y+DKG++ F + FP++ + D KS+LQ
Sbjct: 122 MTGGRTRPALLADVFEAFIGALYLDKGLDTVVGFLEKVVFPKIDSGAFSHVM-DFKSQLQ 180
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ L DG YK+++ GP ++R + V L TG S ++AE +AA
Sbjct: 181 E----LVQRDGA--GTIEYKILQEKGPAHNREFVSTVSLNGRELGTGTGRSKKEAEQHAA 234
Query: 446 KVALQ 450
++AL+
Sbjct: 235 QMALE 239
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAA+V L A + +L G ++
Sbjct: 64 GDAVLELTVSKFLYLKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGEEMT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD G+D V++
Sbjct: 124 GGRTRPALLADVFEAFIGALYLDKGLDTVVGFLEKVVF 161
>gi|358465043|ref|ZP_09175000.1| ribonuclease III [Streptococcus sp. oral taxon 058 str. F0407]
gi|357066117|gb|EHI76275.1| ribonuclease III [Streptococcus sp. oral taxon 058 str. F0407]
Length = 232
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVSRVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVISETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVSRVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
Length = 246
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 22/245 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFL 271
D++ + + K Q L+ G+ F + +LL + FT S Y N N+RLEFL
Sbjct: 6 DKERIHEKRRAK-FQELQKKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFL 62
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+L S YL+ FP EG L+ LR+++V + N + F ++ K +
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEE 120
Query: 332 KMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
R AD+ EAF+GA+Y+D+GM+A +F + FP++ + D KS+LQ
Sbjct: 121 LTGGRTRPALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVM-DFKSQLQ 179
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ DG Y ++E GP +++ + V + L G S ++AE +AA
Sbjct: 180 ELV----QRDG--SGTLEYAILEEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAA 233
Query: 446 KVALQ 450
++AL+
Sbjct: 234 QMALE 238
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D + ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQ-LQE 180
>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
gi|189043301|sp|A7H5Y2.1|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
Length = 225
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFTKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLMEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K S+
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGSL 224
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFTKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLMEKNFPQIDAKILIKDYKTKLQE 161
>gi|406959925|gb|EKD87146.1| hypothetical protein ACD_37C00027G0006 [uncultured bacterium]
Length = 229
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 15/219 (6%)
Query: 240 FNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
F + LL + RS + + SN+RLEFLGD+++ I S YLY++F + EG L+
Sbjct: 16 FKNKALLNQALVHRSYLNENKEIITSNERLEFLGDSIISFIVSSYLYDNFKNYDEGRLTN 75
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYIDKG 352
LRS LVN ++ + ++ + + ++ K + + R AD+ EA +GA+++D G
Sbjct: 76 LRSLLVNTKSLADCARELDLG--SRLLLSKGEEESGGRNNQSLLADVFEALVGALFLDSG 133
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
++A ++ + P+ Q F+ DPKS LQ+ + + P Y V+ G
Sbjct: 134 VQAVKKLLEEVLLPKTQSFVEKNMLKDPKSLLQEY------IQSHKKSSPKYVVLLEEGL 187
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+++ +TV + + K G S Q+AE AA AL+K
Sbjct: 188 PHAKLFTVGAFVGEKLYGKGEGKSKQEAEEIAASNALEK 226
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ FI S +L+ F + +EG L R+ +V + LA A+ + L +L + G +
Sbjct: 49 GDSIISFIVSSYLYDNFKNYDEGRLTNLRSLLVNTKSLADCARELDLGSRLLLSKGEEES 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ +A+ FEAL+GALFLD G+ ++ VL K K + P+ LQE
Sbjct: 109 GGRNNQSLLADVFEALVGALFLDSGVQAVKKLLEEVLLPKTQSFVEKNMLKDPKSLLQE 167
>gi|419780331|ref|ZP_14306181.1| ribonuclease III [Streptococcus oralis SK100]
gi|383185490|gb|EIC77986.1| ribonuclease III [Streptococcus oralis SK100]
Length = 232
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVISETGPAHDKVFNVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415]
gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415]
Length = 228
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
+ L+ G++F LL FT S Y N L + N+RLEFLGD VLQL+ S YL+
Sbjct: 6 EKLKADFGIVFKDKSLLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLISRYLF 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
FP+ EG LS +RS +V + + D G F + + ++R DL E
Sbjct: 64 EKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKTGGRERETILGDLFE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+ +D+G+E E+F P+++ Q D K+ LQ+ + +
Sbjct: 124 AFLGALDLDQGIEVVEKFLNQVMIPKVEVGDYEQ-VKDYKTALQEKLQV-------KGSV 175
Query: 402 PI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
I Y+VI GP + + + V V + L+ G S
Sbjct: 176 QINYRVISETGPAHDKHFEVVVSADGKDLSGGQGKS 211
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF FP EG L+ R+ IV+ + LA +K G E F+ G +
Sbjct: 50 GDAVLQLLISRYLFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
E + + + FEA +GAL LD GI+V ++ + V+ EV + + + LQE+
Sbjct: 110 GGRERETILGDLFEAFLGALDLDQGIEVVEKFLNQVMIPKVEVGDYEQVKDYKTALQEK 168
>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
Length = 246
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 22/245 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFL 271
D++ + + K Q L+ G+ F + +LL + FT S Y N N+RLEFL
Sbjct: 6 DKERIHEKRRAK-FQELQKKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFL 62
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+L S YL+ FP EG L+ LR+++V + N + F ++ K +
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEE 120
Query: 332 KMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
R AD+ EAF+GA+Y+D+GM+A +F + FP++ + D KS+LQ
Sbjct: 121 LTGGRTRPALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVM-DFKSQLQ 179
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ DG Y ++E GP +++ + V + L G S ++AE +AA
Sbjct: 180 ELV----QRDG--SGTLEYAILEEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAA 233
Query: 446 KVALQ 450
++AL+
Sbjct: 234 QMALE 238
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D + ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQ-LQE 180
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ LL + FT S Y N N+RLEFLGD VL+L S +L+ +P
Sbjct: 24 GINFHDESLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTISKFLFKKYPIMS 81
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG L+ +R+++V + + ND+ + + ++R AD+ EAF+GA+Y
Sbjct: 82 EGELTKMRAAIVCEPSLVTLANDLQFGELVLLGKGEEMTGGRERPALLADVFEAFIGALY 141
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G+E QF + P++ + D KS+LQ+ L DG + Y+V++
Sbjct: 142 LDQGLEVVNQFLEKTVIPKINAGAFSHVM-DYKSQLQE----LVQRDG--IGLIEYRVLQ 194
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP +SR + V E L TG S ++AE +AA++AL+
Sbjct: 195 EKGPAHSREFVSRVSLNGEELGTGTGKSKKEAEQHAAEIALK 236
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + + +L G ++
Sbjct: 61 GDAVLELTISKFLFKKYPIMSEGELTKMRAAIVCEPSLVTLANDLQFGELVLLGKGEEMT 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF-SSVLYKDNEVRFKQWMYYPQH----- 206
E +A+ FEA +GAL+LD G++V +Q +V+ K N F M Y
Sbjct: 121 GGRERPALLADVFEAFIGALYLDQGLEVVNQFLEKTVIPKINAGAFSHVMDYKSQLQELV 180
Query: 207 -----------PLQEQEPDGDRQWVEQSPL 225
LQE+ P R++V + L
Sbjct: 181 QRDGIGLIEYRVLQEKGPAHSREFVSRVSL 210
>gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5]
gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5]
Length = 247
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 12/226 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNL-TLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
LE G +F LL T RS ++N + +N+RLEFLGD+VL LI S YL FP
Sbjct: 14 LEERLGYVFMRKELLHTALTHRSFFHSNRKSAENNERLEFLGDSVLGLIISHYLLESFPA 73
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCND---IGMPFFANIINPKVDLKMKDR--ADLLEAFLG 345
EG LS +RS +VN +T S V + +G F + K AD +EA +
Sbjct: 74 QSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEENTGGRNKASILADAMEAVVA 133
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D G+ A ++ + + D K++LQ+ +L P Y+
Sbjct: 134 AIYLDGGLNAARNIILELMSEEIESTVFSNRHRDYKTELQELSQGSLSL------APEYR 187
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
V GP + + + V++Y ++ G S + AE AA+ A++K
Sbjct: 188 VEREWGPDHQKHFAVSLYLHDQVYGHGEGTSKKSAEQKAARAAMEK 233
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK-RIGLEDFMLYAHGSDL 151
G++ I S +L FP EG L+ R+ IV + L+ +A+ +I L ++ G +
Sbjct: 55 GDSVLGLIISHYLLESFPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEEN 114
Query: 152 CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+A+ EA++ A++LDGG++ A + ++ ++ E
Sbjct: 115 TGGRNKASILADAMEAVVAAIYLDGGLNAARNIILELMSEEIE 157
>gi|384915457|ref|ZP_10015677.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
gi|384527143|emb|CCG91546.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
Length = 242
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 18/240 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL-TLGSN-QRLEFLGDTVLQLITSDYLYN 286
L LE G F + +LL T S ++ T G + QRLEFLGD VL L ++ LY
Sbjct: 3 LAELEERLGHTFRNNQLLEEALTHPSYFVESMKTTGKDFQRLEFLGDAVLGLAITEKLYE 62
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLL 340
FP EG L+ LR+ LV+ + S + + +G+ + + K + K + R A+ L
Sbjct: 63 IFPSFDEGKLTKLRAKLVSRKVLSPLSSSLGIGKYLRL--GKGEEKNQGRTKPSNLANAL 120
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ---QCCLTLRTLDGG 397
E+ +GA+Y+D G E + F F P + + DP + L+ L L
Sbjct: 121 ESVIGALYLDGGWEKTKSFVFQLFSP-----LFLELHKDPSAFLEYENSKGLLQEFLQKK 175
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
++P+Y+++ G +++ Y V V +KN+ L K +G S ++AE+ AAK A +K S P
Sbjct: 176 GMELPVYRIVMESGEAHNKWYEVEVLWKNQVLGKGSGKSKKEAELRAAKEAFEKLISQTP 235
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+ +FP +EG L RA +V + L+ L+ +G+ ++ G + +AN
Sbjct: 60 LYEIFPSFDEGKLTKLRAKLVSRKVLSPLSSSLGIGKYLRLGKGEEKNQGRTKPSNLANA 119
Query: 165 FEALMGALFLDGGIDVAD----QVFSSV---LYKD 192
E+++GAL+LDGG + Q+FS + L+KD
Sbjct: 120 LESVIGALYLDGGWEKTKSFVFQLFSPLFLELHKD 154
>gi|333909022|ref|YP_004482608.1| ribonuclease 3 [Marinomonas posidonica IVIA-Po-181]
gi|333479028|gb|AEF55689.1| Ribonuclease 3 [Marinomonas posidonica IVIA-Po-181]
Length = 227
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL T RS G N N+RLEFLGD++L + ++ L++ FP+ EG L
Sbjct: 13 GYFFADLGLLELALTHRSYGGKN-----NERLEFLGDSILNYVIAEDLFHRFPKAKEGEL 67
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S LR+SLV T + + + + F + ++ R AD +E +GAMY+D G
Sbjct: 68 SRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADSVEGIIGAMYLDAG 127
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ C Q + RL+ L D K++LQ+ L + +P Y V++ VG
Sbjct: 128 MDICRQHILAWYKDRLEATSLKVVTKDAKTRLQE------YLQARKHALPQYDVVDIVGE 181
Query: 413 TNSRSYTVAVYFK--NERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+ +++ V + + NE + + GNS + AE NAA AL+K +
Sbjct: 182 PHDQTFHVHCHIELCNEAI-EGCGNSRRIAEQNAAAKALEKLEKV 225
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ ++ + LFH FP +EG L+ RA++V+ LA LA+ L DF+ G
Sbjct: 43 GDSILNYVIAEDLFHRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKDNEVRFKQW 200
+A+ E ++GA++LD G+D+ Q V+ KD + R +++
Sbjct: 103 GGFRRDSILADSVEGIIGAMYLDAGMDICRQHILAWYKDRLEATSLKVVTKDAKTRLQEY 162
Query: 201 MYYPQHPL 208
+ +H L
Sbjct: 163 LQARKHAL 170
>gi|419542137|ref|ZP_14081268.1| ribonuclease III [Campylobacter coli 2548]
gi|380523896|gb|EIA49530.1| ribonuclease III [Campylobacter coli 2548]
Length = 224
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
Length = 246
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 22/253 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFL 271
D++ + + K Q L+ G+ F + +LL + FT S Y N N+RLEFL
Sbjct: 6 DKERIHEKRRAK-FQELQNKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFL 62
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+L S YL+ FP EG L+ LR+++V + N + F ++ K +
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEE 120
Query: 332 KMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
R AD+ EAF+GA+Y+D+GM+A +F + FP++ + D KS+LQ
Sbjct: 121 LTGGRTRPALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVM-DFKSQLQ 179
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ DG Y ++E GP +++ + V + L G S ++AE +AA
Sbjct: 180 ELV----QRDG--SGTLEYAILEEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAA 233
Query: 446 KVALQKCPSICPQ 458
++AL+ + Q
Sbjct: 234 QMALETLRAADQQ 246
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D + ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQ-LQE 180
>gi|335030027|ref|ZP_08523526.1| ribonuclease III [Streptococcus infantis SK1076]
gi|334267489|gb|EGL85949.1| ribonuclease III [Streptococcus infantis SK1076]
Length = 232
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE ++F+ +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELETVLEQRFDLVFSDKQLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +D+ + + F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDRDLARVKDFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+VI +GP + + + V V + + L G S + AE AAK A+++ C
Sbjct: 173 GDVDIR-YQVISEIGPAHDKMFQVEVLVEGKSLGTGQGRSKKLAEQEAAKNAVEEGLDSC 231
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V D ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDRDLARVKDFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|401683573|ref|ZP_10815459.1| ribonuclease III [Streptococcus sp. BS35b]
gi|400187651|gb|EJO21845.1| ribonuclease III [Streptococcus sp. BS35b]
Length = 232
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V K + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVKGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + FEA +GAL LD DVA
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDK--DVA 136
>gi|385260571|ref|ZP_10038715.1| ribonuclease III [Streptococcus sp. SK140]
gi|385191121|gb|EIF38545.1| ribonuclease III [Streptococcus sp. SK140]
Length = 232
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 17/227 (7%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F LL FT S Y N L + N+RLEFLGD VLQL+ S+YL+ +P+ E
Sbjct: 14 LVFTDKSLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLISEYLFKKYPKKPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LR+ +V + + D F + + ++R D EAFLGA+ +
Sbjct: 72 GDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
DK ++ + F P+++ D K+ LQ+ G+ DI Y+VI
Sbjct: 132 DKDIKTVKTFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----NGDVDIR-YQVISE 184
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
+GP + + + V V + + L G S + AE AAK A++K C
Sbjct: 185 IGPAHDKMFEVEVLVEGQSLGSGKGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLFKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+ + FEA +GAL LD I
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDI 135
>gi|375088734|ref|ZP_09735072.1| ribonuclease III [Dolosigranulum pigrum ATCC 51524]
gi|374561699|gb|EHR33038.1| ribonuclease III [Dolosigranulum pigrum ATCC 51524]
Length = 232
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 16/234 (6%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN-----QRLEFLGDTVLQLITSDYL 284
Q+++ + ++FN R+L FT S + L +RLEFLGD V++L SDYL
Sbjct: 6 QHIKDNFNIVFNDDRILIEAFTHASYANDHRHLVDEPIKNLERLEFLGDAVIELFVSDYL 65
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLL 340
+N F E EG L+ LR+S+V + + + + + F + + + + R D+
Sbjct: 66 FNQFKELPEGQLTRLRASIVRAESLAELATECQLAQFIRLGKGEEKMGGRQRPALLCDVF 125
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EAF+GA+Y D+G+E+ +F + F +++ + + D K+ LQ+ G +
Sbjct: 126 EAFVGAIYQDQGVESVRRFLRQVMFSKVEQNSFSYD-TDYKTALQEFMQQ-----SGVVN 179
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
I Y V+E GP + R +TV V + + G S + AE AAK AL+ S
Sbjct: 180 IE-YTVLETSGPDHDREFTVEVSIEGDYHGVGMGKSKKLAEQKAAKQALEALSS 232
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ F ++ EG L RA+IV+ + LA LA L F+ G +
Sbjct: 53 GDAVIELFVSDYLFNQFKELPEGQLTRLRASIVRAESLAELATECQLAQFIRLGKGEEKM 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FEA +GA++ D G++ + V++
Sbjct: 113 GGRQRPALLCDVFEAFVGAIYQDQGVESVRRFLRQVMF 150
>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
Length = 225
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 20/238 (8%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
++K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL
Sbjct: 1 MMKNIEKLERSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYL 56
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
++ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D L
Sbjct: 57 FHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDAL 116
Query: 341 EAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
EA +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 EAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGK 167
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 IGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 225
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 44 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 104 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 162
>gi|333371186|ref|ZP_08463148.1| ribonuclease III [Desmospora sp. 8437]
gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437]
Length = 231
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
N+RLEFLGD VL+L S++LY+ FP EG L+ +R+ +V + + D+
Sbjct: 41 DNERLEFLGDAVLELTVSEHLYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVR 100
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + ++R AD+ EAF+GA+Y++KG++ F PR+ L Q +D
Sbjct: 101 LGKGEELTGGRNRPALLADVFEAFIGALYLEKGLDGVIDFMNRVILPRIDDQWLAQ-GSD 159
Query: 380 PKSKLQQCCLT--LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
KS+LQ+ L +L +Y++++ GP + R + V+ E+L G S
Sbjct: 160 AKSRLQEAVQQEHLGSL--------VYQIVDVQGPAHDRQFVAEVWLSGEKLGTGAGRSK 211
Query: 438 QQAEMNAAKVALQK 451
++AE AA LQ+
Sbjct: 212 KEAEQQAAAEGLQR 225
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S HL+H FP ++EG L RA IV LA A+ + + G +L
Sbjct: 49 GDAVLELTVSEHLYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRLGKGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FEA +GAL+L+ G+D
Sbjct: 109 GGRNRPALLADVFEAFIGALYLEKGLD 135
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 11/217 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL FT RS Y N L +N+RLEFLGD+VL +I ++ L+ + P+ EG L+ LR+++V
Sbjct: 31 LLEHAFTHRSFAYENGGLPTNERLEFLGDSVLGVIVTESLFRNHPDLSEGRLAKLRAAVV 90
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N R + V D+ + + + + +D+ AD +EA +GA+Y+D+G E +
Sbjct: 91 NMRALAGVARDLKLGKYLRLGRGEEATGGRDKSSILADCVEALIGAVYLDRGFEVAGRVV 150
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F ++ D K+ LQ+ L +P Y VI GP +++++
Sbjct: 151 HTLFDDLMESSARLGAGLDWKTSLQELVAQLGV------GVPEY-VIAESGPDHAKTFEA 203
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
V ++ G S ++AE AA+ A + + P
Sbjct: 204 RVRIGSDTYGHGIGRSKKEAEQQAAETAWKALRAAHP 240
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + LF PD+ EG LA RAA+V + LA +A+ + L ++ G +
Sbjct: 58 GDSVLGVIVTESLFRNHPDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRLGRGEEAT 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
+ +A+C EAL+GA++LD G +VA +V + L+ D
Sbjct: 118 GGRDKSSILADCVEALIGAVYLDRGFEVAGRVVHT-LFDD 156
>gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem]
gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem]
Length = 232
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNH 287
L+ +E G F+ LL T R+ Y N G NQRLEF GD VL + SD L
Sbjct: 9 LEGIEGRLGYRFSDRGLLVEALTHRT--YVNEAGGRDNQRLEFFGDAVLDFLLSDMLLVR 66
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAF 343
FP+ EG L+ +R++LV+ + + + D+G K + K AD EA
Sbjct: 67 FPDSREGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKGGGRQKRSLLADAFEAL 126
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
L A+Y+D G++ + + F P L L D K++LQ+ T R G ++P
Sbjct: 127 LAALYLDGGLDPARRVVEALFAPLLSSRDL-LSGRDAKTELQE---TARLFKG---ELPR 179
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
Y++ + GP + + +TV VY E + + G + ++AE +AA+ A
Sbjct: 180 YQLKQVTGPDHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAARAA 224
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ S L FPD EG L RAA+V L +A + L + G +
Sbjct: 51 GDAVLDFLLSDMLLVRFPDSREGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKG 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 188
+ + +A+ FEAL+ AL+LDGG+D A +V ++
Sbjct: 111 GGRQKRSLLADAFEALLAALYLDGGLDPARRVVEAL 146
>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
Length = 225
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 20/238 (8%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
++K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL
Sbjct: 1 MMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYL 56
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
++ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D L
Sbjct: 57 FHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTL 116
Query: 341 EAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
EA +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 EAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGK 167
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 IGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 225
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 44 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 104 GGKEKPSILSDTLEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 162
>gi|399910407|ref|ZP_10778721.1| ribonuclease III [Halomonas sp. KM-1]
Length = 230
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 118/244 (48%), Gaps = 27/244 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
K L G F+ I LL T RS G N N+RLEFLGD+++ + ++ LY
Sbjct: 3 KSLSAFSRRIGHDFSDITLLELAMTHRSFGGQN-----NERLEFLGDSIVNFVIAEALYE 57
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
FP+ EG LS LR+ LV +T + + ++ + + ++ R AD +EA
Sbjct: 58 RFPQAREGQLSRLRARLVRGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVEA 117
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
LGA+Y+D GM+ + RL+ L DPK++LQ+ L + +P
Sbjct: 118 VLGAIYLDAGMDVARTRVLAWYAERLESIDLQDTQKDPKTRLQEF------LQSRQSPLP 171
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAK---ATGNSIQQAEMNAAKVALQKCPSICPQL 459
Y V+ G + +++TV + E LA TG+S + AE AA++AL QL
Sbjct: 172 RYDVVSVEGEAHDQTFTVECHV--ELLATHTLGTGSSRRHAEQQAAELAL-------LQL 222
Query: 460 DHQK 463
++QK
Sbjct: 223 ENQK 226
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+ FP EG L+ RA +V+ Q LA LA+ + + + G
Sbjct: 43 GDSIVNFVIAEALYERFPQAREGQLSRLRARLVRGQTLAELAREMSFGECLRLGSGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD--------QVFSSV----LYKDNEVRFKQW 200
+A+ EA++GA++LD G+DVA + S+ KD + R +++
Sbjct: 103 GGHRRDSILADAVEAVLGAIYLDAGMDVARTRVLAWYAERLESIDLQDTQKDPKTRLQEF 162
Query: 201 MYYPQHPL 208
+ Q PL
Sbjct: 163 LQSRQSPL 170
>gi|375008162|ref|YP_004981795.1| ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287011|gb|AEV18695.1| Ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 246
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 22/245 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFL 271
D++ + + K Q L+ G+ F + +LL + FT S Y N N+RLEFL
Sbjct: 6 DKERIHEKRRAK-FQELQNKIGITFRNEKLLIQAFTHSS--YVNEHRRRLHEDNERLEFL 62
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+L S YL+ FP EG L+ LR+++V + N + F ++ K +
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEE 120
Query: 332 KMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
R AD+ EAF+GA+Y+D+GMEA F FP++ + D KS+LQ
Sbjct: 121 LTGGRTRPALLADVFEAFIGALYLDQGMEAVLHFLGQTIFPKIDEGAFSHVM-DFKSQLQ 179
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ DG Y ++E GP +++ + V + L G S ++AE +AA
Sbjct: 180 ELV----QRDG--SGTLEYAILEEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAA 233
Query: 446 KVALQ 450
++AL+
Sbjct: 234 QMALE 238
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G++ ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDQGMEAVLHFLGQTIFPKIDEGAFSHVMDFKSQ-LQE 180
>gi|333923291|ref|YP_004496871.1| ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748852|gb|AEF93959.1| Ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 246
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 10/195 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
NQRLEFLGD VL+L+ S+YLY FP+ EG L+ +R++ V + + V + + +
Sbjct: 46 NQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRM 105
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ ++R AD EA LGA+Y+D G+EA +F P + + + D
Sbjct: 106 GRGEERSGGRERPSILADAFEALLGAIYLDHGLEAARRFVLEQLNPIITDVVAGRLDRDY 165
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K++LQ+ L PD Y +++ GP + + +T V ++ + + + +G+S ++A
Sbjct: 166 KTELQE------RLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEA 219
Query: 441 EMNAAKVALQKCPSI 455
E AAK A + ++
Sbjct: 220 EQQAAKDAFNRLDAL 234
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ FPD EG L RAA V LA +A+ + L + G +
Sbjct: 53 GDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRMGRGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E +A+ FEAL+GA++LD G++ A
Sbjct: 113 GGRERPSILADAFEALLGAIYLDHGLEAA 141
>gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi]
gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr]
gi|81609804|sp|Q660G7.1|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi]
gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr]
Length = 245
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 15/225 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
+ FN+ LL + S Y+N +N+RLEFLGD+VL LI +D+LY +P EG
Sbjct: 27 IDFNNFDLLNTALSHSS--YSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEG 84
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
LS RS +V+ + S + +I + + + + +++ AD +EAF+GA+Y+D
Sbjct: 85 ELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLD 144
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G +F F ++ ++ D KS LQ+ + P YK+ + +
Sbjct: 145 SGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKIS------PSYKLDKEI 198
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 199 GPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 243
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+ +A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
K +A+ EA +GA++LD G +A +
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSMATE 152
>gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04]
gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04]
Length = 246
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 15/225 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
+ FN+ LL + S Y+N +N+RLEFLGD+VL LI +D+LY +P EG
Sbjct: 28 IDFNNFDLLNTALSHSS--YSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEG 85
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
LS RS +V+ + S V +I + + + + +++ AD +EAF+GA+Y+D
Sbjct: 86 ELSKARSYIVSEDSLSSVAREIELGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLD 145
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G +F F ++ ++ D KS LQ+ + P YK+ + +
Sbjct: 146 SGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKIS------PSYKLDKEI 199
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 200 GPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 244
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+ +A+ I L ++L G +
Sbjct: 63 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSVAREIELGSYILLGRGEESN 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
K +A+ EA +GA++LD G +A +
Sbjct: 123 DGRNKKGILADAIEAFVGAIYLDSGFSMATE 153
>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
Length = 248
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 116/234 (49%), Gaps = 22/234 (9%)
Query: 229 LQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L LE S GV F LL A + T+ N GSN+R+EFLGD VL +I +D LY+
Sbjct: 15 LTELENSLGVKFEQPSLLEQALIHTSWVNENPNHPSGSNERMEFLGDAVLGVIFADRLYH 74
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLL 340
FP+ EG L+ RS LV R +S+V +G+ + + + K R A
Sbjct: 75 DFPDIQEGDLTRFRSLLV--RRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 132
Query: 341 EAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
EA L A+YIDKGM+ + F R+Q N ++ +L Q L L
Sbjct: 133 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQL------ 186
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y++ GP ++R + VY ++ A+ +G S ++AE +AAKVALQ+
Sbjct: 187 ---TPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAEASAAKVALQQ 237
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
I + L+H FPDI+EG L +R+ +V+ + L +A I L ++ G D+
Sbjct: 67 IFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPA 126
Query: 160 AMANCFEALMGALFLDGGIDVADQV 184
+A FEA++ A+++D G+DV +V
Sbjct: 127 NLAGAFEAVLAAIYIDKGMDVTREV 151
>gi|452911420|ref|ZP_21960088.1| Ribonuclease III [Kocuria palustris PEL]
gi|452833348|gb|EME36161.1| Ribonuclease III [Kocuria palustris PEL]
Length = 241
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
Query: 249 VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRT 308
T RS Y + N+RLEFLGD+VL L +D ++ +PE EG L+ +R+S+V+ RT
Sbjct: 24 ALTHRSYAYEHAGQKHNERLEFLGDSVLGLTVTDEIFTRYPERSEGDLAKIRASVVSTRT 83
Query: 309 QSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCF 364
+ + + G+ F + ++ D+ AD +EA +GA+Y+ +G++A F
Sbjct: 84 LAQLARERGLGEFIRLGRGEIRTNGHDKSSILADTMEAVIGALYLSQGLDAARAFVLRMI 143
Query: 365 FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYF 424
P L+ + +E D K+++Q+ +R + + +E GP ++RS+T +
Sbjct: 144 VPLLEDDFVIREGRDWKTEIQELA-AMRGMG------AVTYEVEGTGPDHNRSFTASCLL 196
Query: 425 KNERLAKATGNSIQQAEMNAAKVA 448
G S ++AE AA+ A
Sbjct: 197 GGTVHGTGPGTSKKEAERRAAESA 220
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 84 YRMYMYIHKGNNFSQ-----------FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 132
+R Y Y H G ++ + +F +P+ EG LA RA++V + LA
Sbjct: 27 HRSYAYEHAGQKHNERLEFLGDSVLGLTVTDEIFTRYPERSEGDLAKIRASVVSTRTLAQ 86
Query: 133 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 181
LA+ GL +F+ G + + +A+ EA++GAL+L G+D A
Sbjct: 87 LARERGLGEFIRLGRGEIRTNGHDKSSILADTMEAVIGALYLSQGLDAA 135
>gi|406918003|gb|EKD56659.1| hypothetical protein ACD_58C00123G0005 [uncultured bacterium]
Length = 232
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLY 285
++ E + + FN L +VF RS N L N+RLEFLGD VL+L+ ++YLY
Sbjct: 7 EIAKFEKKNHLSFNDKDLFRQVFVHRSYLNENPGFNLDHNERLEFLGDAVLELVVTEYLY 66
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
++P + EG L+ RS+LV S V + + + + K R A+ E
Sbjct: 67 KNYP-NPEGELTNWRSALVKGERLSQVATKLNIEKLLYLSRGEQKSSGKSRQLILANAFE 125
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y+DKG + +++ L+ + + + D KS LQ+ ++
Sbjct: 126 ALIGAIYLDKGYQKVQKYIYDNIIIYLEEILDKKLFRDAKSTLQEISQEKFSI------T 179
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P Y V+E GP +++ + V V+ ++++ + G S Q AE +AAK +L+
Sbjct: 180 PNYNVLEESGPDHNKHFIVGVFIGDKQVGRGNGYSKQTAEQDAAKNSLE 228
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 73/146 (50%), Gaps = 19/146 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + + +L+ +P+ EG L +R+A+V+ + L+ +A ++ +E + + G
Sbjct: 53 GDAVLELVVTEYLYKNYPN-PEGELTNWRSALVKGERLSQVATKLNIEKLLYLSRGEQKS 111
Query: 153 HEVELKHAMANCFEALMGALFLDGG------------IDVADQVFSSVLYKD-----NEV 195
+ +AN FEAL+GA++LD G I +++ L++D E+
Sbjct: 112 SGKSRQLILANAFEALIGAIYLDKGYQKVQKYIYDNIIIYLEEILDKKLFRDAKSTLQEI 171
Query: 196 RFKQWMYYPQHP-LQEQEPDGDRQWV 220
+++ P + L+E PD ++ ++
Sbjct: 172 SQEKFSITPNYNVLEESGPDHNKHFI 197
>gi|358461418|ref|ZP_09171581.1| Ribonuclease 3 [Frankia sp. CN3]
gi|357073297|gb|EHI82806.1| Ribonuclease 3 [Frankia sp. CN3]
Length = 309
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD VLQL+ +D LY P+ EG L+ R+S+V
Sbjct: 26 LLDRALTHRSYAYENGNLPTNERLEFLGDAVLQLVVTDALYRRHPDLAEGALAKQRASVV 85
Query: 305 NNRTQSVVCNDIGM----PFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEAC 356
N R + V DIG P+ + + +D+ AD LEA +GA+Y + G+E
Sbjct: 86 NMRALAAVARDIGSVGIGPYLL-LGKGEETTGGRDKPSILADTLEALIGAVYEELGLEIA 144
Query: 357 EQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSR 416
F F P L D K+ LQ+ L G PD V+ GP +++
Sbjct: 145 SAFVHRYFDPLLDEAAGRGAGLDWKTSLQERTAELGM---GPPDY----VVTDSGPDHAK 197
Query: 417 SYTVAVYFKNERLAKATGNSIQQAEMNAAK---VALQ 450
+ + + G S ++AE AA+ VALQ
Sbjct: 198 RFRARARISDRIYGEGEGGSKKEAEQRAAEHAFVALQ 234
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGS 149
G+ Q + + L+ PD+ EG LA RA++V + LA +A+ I G+ ++L G
Sbjct: 53 GDAVLQLVVTDALYRRHPDLAEGALAKQRASVVNMRALAAVARDIGSVGIGPYLLLGKGE 112
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + +A+ EAL+GA++ + G+++A
Sbjct: 113 ETTGGRDKPSILADTLEALIGAVYEELGLEIA 144
>gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 236
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 13/212 (6%)
Query: 245 LLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
LL FT S + + L +RLEFLGD VLQLI S+Y++ +P+ +G L+ LR++
Sbjct: 22 LLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTRLRAA 81
Query: 303 LVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQ 358
+VN ++ S + + + + +DR D+ E+F+GA+Y+D+G + E
Sbjct: 82 MVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVGALYLDQGKKVVEG 141
Query: 359 FCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSY 418
F + FP+L + + + D K++LQ+ G DI Y++++ GP N R +
Sbjct: 142 FVQQVIFPKLDEGMFAK-FFDHKTELQELAQA-----DGPVDID-YELVDEYGPDNDRLF 194
Query: 419 TVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
V V ++ L G+S + AE AA+ AL+
Sbjct: 195 KVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S ++F +P + +G L RAA+V Q + A+ ++ G +
Sbjct: 51 GDAVLQLIVSEYIFKRYPKLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G V + V++
Sbjct: 111 GARDRDSLLCDIFESFVGALYLDQGKKVVEGFVQQVIF 148
>gi|386854106|ref|YP_006203391.1| Ribonuclease III [Borrelia garinii BgVir]
gi|408671311|ref|YP_006871382.1| ribonuclease III [Borrelia garinii NMJW1]
gi|365194140|gb|AEW69038.1| Rnc [Borrelia garinii BgVir]
gi|407241133|gb|AFT84016.1| ribonuclease III [Borrelia garinii NMJW1]
Length = 245
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 16/233 (6%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYN 286
++LE S + FN+ LL + S Y+N +N+RLEFLGD+VL LI +D+LY
Sbjct: 20 EFLENLS-IDFNNFDLLNTALSHSS--YSNELDQKADNNERLEFLGDSVLNLIITDHLYK 76
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
+P EG LS RS +V+ + S + +I + + + + +++ AD +EA
Sbjct: 77 TYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEA 136
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D G +F F ++ ++ D KS LQ+ + P
Sbjct: 137 FVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKIS------P 190
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
YK+ + +GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 191 SYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 243
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+ +A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKD-----NEV 195
K +A+ EA +GA++LD G +A + +F+ +KD E
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEY 181
Query: 196 RFKQWMYYPQHPL-QEQEPDGDR 217
K++ P + L +E PD D+
Sbjct: 182 VQKKYKISPSYKLDKEIGPDHDK 204
>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
Length = 204
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 10/195 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
NQRLEFLGD VL+L+ S+YLY FP+ EG L+ +R++ V + + V + + +
Sbjct: 4 NQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRM 63
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ ++R AD EA LGA+Y+D G+EA +F P + + + D
Sbjct: 64 GRGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLEQLNPIITDVVAGRLDRDY 123
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K++LQ+ L PD Y +++ GP + + +T V ++ + + + +G+S ++A
Sbjct: 124 KTELQE------RLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEA 177
Query: 441 EMNAAKVALQKCPSI 455
E AAK A + ++
Sbjct: 178 EQQAAKDAFNRLDAL 192
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ FPD EG L RAA V LA +A+ + L + G +
Sbjct: 11 GDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRMGRGEERS 70
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E +A+ FEAL+GA++LD G++ A
Sbjct: 71 GGRERPSILADAFEALLGAIYLDHGLEAA 99
>gi|392957494|ref|ZP_10323017.1| ribonuclease III [Bacillus macauensis ZFHKF-1]
gi|391876457|gb|EIT85054.1| ribonuclease III [Bacillus macauensis ZFHKF-1]
Length = 261
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 21/245 (8%)
Query: 217 RQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLG 272
R+ +++ ++++ L+ + F +LL + FT S Y N G N+RLEFLG
Sbjct: 24 RKQMDEKVRIQKVAPLQEKISLYFVDEKLLVQAFTHSS--YVNEHRGRPYEDNERLEFLG 81
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
D VL+L S +LY +P EG L+ LR+++V + ++ N++ + + + +
Sbjct: 82 DAVLELTISQFLYKKYPTMSEGELTKLRAAIVCEPSLVLLANELHFGDYVLLGKGEENTG 141
Query: 333 MKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
+ R AD+ EAF+GA+Y+DKG++A + F ++ PR+ + D KS+LQ+
Sbjct: 142 GRTRPALLADVFEAFIGALYLDKGIDAVKAFLEIHVHPRINEGAFSHVM-DFKSQLQEYV 200
Query: 389 LT--LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
L T+D Y +I+ GP ++R + V E G S ++AE +AA+
Sbjct: 201 QREGLGTID--------YAIIQEKGPAHNREFVSEVKLNQEGCGVGFGRSKKEAEQHAAQ 252
Query: 447 VALQK 451
AL K
Sbjct: 253 EALGK 257
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAAIV L LA + D++L G +
Sbjct: 81 GDAVLELTISQFLYKKYPTMSEGELTKLRAAIVCEPSLVLLANELHFGDYVLLGKGEENT 140
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+A+ FEA +GAL+LD GID
Sbjct: 141 GGRTRPALLADVFEAFIGALYLDKGIDA 168
>gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium hydrogeniformans]
gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium hydrogeniformans]
Length = 238
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 12/218 (5%)
Query: 244 RLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRS 301
+LL R T +S NL++ N+RLEFLGD+VL L S Y++N F + EG L+ +R+
Sbjct: 25 KLLQRALTHKSFPNENKNLSIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAKMRA 84
Query: 302 SLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACE 357
+V+ + ++G F + +D AD +EA GA+Y+D+G A
Sbjct: 85 VVVSAPILAEAAKKLELGRYLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFTAAS 144
Query: 358 QFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F ++ + D K+ LQ+ DG P Y+VI+ GP ++++
Sbjct: 145 DFVLKILKEDIKEVAMGNHIQDYKTMLQEII----QQDGNIR--PEYEVIDEKGPDHNKT 198
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+ VAV K L G+S ++AE AAK AL K I
Sbjct: 199 FIVAVKLKENSLGSGQGSSKKEAEQEAAKFALHKLDKI 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ S ++F+ F D EG LA RA +V LA AK++ L ++ G ++
Sbjct: 55 GDSVLSLAVSTYIFNKFSDFPEGELAKMRAVVVSAPILAEAAKKLELGRYLFLGKGEEMT 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E +A+ EA+ GAL+LD G A +L +D
Sbjct: 115 GGRERDSILADSMEAIFGALYLDQGFTAASDFVLKILKED 154
>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
Length = 259
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 19/233 (8%)
Query: 228 QLQYLEYSS--GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q+ E+ G+ F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 EMQFREFQKKIGISFENEKLLKQAFTHSS--YVNEHRRKPYEDNERLEFLGDAVLELTVS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+LY +P EG L+ LR+++V + N++ + + ++R A
Sbjct: 75 QFLYKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLA 134
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ EAF+GA+Y++KG++ F + FP++ + D KS+LQ+ L DG
Sbjct: 135 DVFEAFIGALYLEKGIDTVIGFLEQTVFPKINSGAFSHVM-DFKSQLQE----LVQRDGA 189
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
YK+++ GP +SR + V L TG S ++AE +AA++AL+
Sbjct: 190 --GAIEYKILQEKGPAHSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALE 240
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAA+V L A + +L G ++
Sbjct: 65 GDAVLELTVSQFLYKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
E +A+ FEA +GAL+L+ GID
Sbjct: 125 GGRERPALLADVFEAFIGALYLEKGIDT 152
>gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4]
gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4]
Length = 240
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
F LL T RS + N + G NQRLEF GD V+ + S L FP+ EG
Sbjct: 20 FADRSLLTEALTHRS--FVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLERFPDSREGA 77
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDK 351
L+ +R+SLV+ + + + +IG+ F + + + + AD EA + A+Y+D
Sbjct: 78 LTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERSGGRRKRSLLADAYEALMAAVYLDG 137
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G+E ++ + F + + D K++ Q+ LR +P Y + G
Sbjct: 138 GIEPVQRLVEAHFARLMAGREVLSAGRDYKTEFQELAHALRG------SMPRYVLRGISG 191
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P + RS+TVA++ +ER+ + G S ++AE AA+ + + SI
Sbjct: 192 PDHERSFTVALFIGDERMGEGAGRSKKEAEQAAAREGIARLESI 235
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ S L FPD EG L RA++V LA LA+ IGL F+ G +
Sbjct: 54 GDAVIDFLLSRMLLERFPDSREGALTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERS 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ +EALM A++LDGGI+
Sbjct: 114 GGRRKRSLLADAYEALMAAVYLDGGIE 140
>gi|419779382|ref|ZP_14305258.1| ribonuclease III [Streptococcus oralis SK10]
gi|383186410|gb|EIC78880.1| ribonuclease III [Streptococcus oralis SK10]
Length = 232
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKDRFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+ + FEA +GAL LD +
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDV 135
>gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71]
gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71]
Length = 224
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 16/211 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
Q+LE G N+ LL + + RS+G N N+RLEFLGD+VL + S+ LY FP
Sbjct: 5 QWLERQFGCRLNNDALLHQALSHRSVGSRN-----NERLEFLGDSVLGYVVSEELYRRFP 59
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLG 345
+ EG LS LR SLV + V +I + + + + R AD EA LG
Sbjct: 60 DADEGQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFEAILG 119
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+ +D G+EAC F R + L Q DPK++LQ+ L G +P Y
Sbjct: 120 AIVLDLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQEL------LQGSGRPLPEYV 173
Query: 406 VIEHVGPTNSRSYTVAVYFKNER-LAKATGN 435
+ + G ++R +TVA + R +A+ G+
Sbjct: 174 LRKATGEDHARIFTVACELADGREVAEGIGD 204
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ ++ S L+ FPD +EG L+ R ++V+ LA +A+ I L + + G
Sbjct: 42 GDSVLGYVVSEELYRRFPDADEGQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHG 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE-VRFKQWMYYPQHPLQE 210
+A+ FEA++GA+ LD GI+ V + E ++ +Q P+ LQE
Sbjct: 102 GGRRRNSILADSFEAILGAIVLDLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQE 160
>gi|408791618|ref|ZP_11203228.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463028|gb|EKJ86753.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 242
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGY--TNLTLGSNQRLEFLGDTVLQLITSDY 283
LK+LQ L + F I LL F RS ++ L N+RLEFLGD+VL ++ +++
Sbjct: 17 LKELQVL---TKTQFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEF 73
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD---RADLL 340
LY P+ EG L+ L+S +V+ + + P + + + D + +AD
Sbjct: 74 LYRSLPKGKEGKLAKLKSKMVSAPAIAKLARVYRFPEYLLLGKGERDKGEANANLQADCF 133
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EAFLGA+Y+D+G+E+C +F F + +E D K+ LQ+ C
Sbjct: 134 EAFLGALYLDQGLESCRKFLTPHFQMMEKAVDDAEETKDYKTILQEFC------QKKWKK 187
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+P Y V++ GP + + + V+V + A G + ++AE AAK AL+
Sbjct: 188 LPEYSVMKEEGPDHDKEFLVSVVLEKNFQATGEGKNKRRAEQMAAKAALR 237
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 19/156 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ P +EG LA ++ +V +A LA+ +++L G
Sbjct: 62 GDSVLGILAAEFLYRSLPKGKEGKLAKLKSKMVSAPAIAKLARVYRFPEYLLLGKGERDK 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGID---------------VADQVFSSVLYKDNEVRF 197
E + A+CFEA +GAL+LD G++ D + YK F
Sbjct: 122 GEANA-NLQADCFEAFLGALYLDQGLESCRKFLTPHFQMMEKAVDDAEETKDYKTILQEF 180
Query: 198 --KQWMYYPQHP-LQEQEPDGDRQWVEQSPLLKQLQ 230
K+W P++ ++E+ PD D++++ L K Q
Sbjct: 181 CQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLEKNFQ 216
>gi|393201759|ref|YP_006463601.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
gi|406664636|ref|ZP_11072411.1| Ribonuclease 3 [Bacillus isronensis B3W22]
gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
gi|405387484|gb|EKB46908.1| Ribonuclease 3 [Bacillus isronensis B3W22]
Length = 253
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 17/230 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 283
Q + LE + F + LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 22 QFEILENEMNIHFQNKDLLYQAFTHSS--YVNEHRRKLFTDNERLEFLGDAVLELSVSKY 79
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ FP EG L+ LR+S+V + V N++ F + + ++R AD+
Sbjct: 80 LFEKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADV 139
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
E+F+GA+Y+D+G+E F + FP+++ + D KS+LQ+ + +T +G
Sbjct: 140 FESFVGALYLDQGLEVVVAFLERVVFPKVEVGAFSHVM-DFKSQLQE--IIQQTNNG--- 193
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+ Y++++ GP ++R++ V ++ L G S ++AE AA+ A+
Sbjct: 194 -LLNYEIVDEKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAAQSAM 242
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RA+IV L A + F+L G +L
Sbjct: 68 GDAVLELSVSKYLFEKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 195
E +A+ FE+ +GAL+LD G++V V++ EV
Sbjct: 128 GGRERPALLADVFESFVGALYLDQGLEVVVAFLERVVFPKVEV 170
>gi|322375351|ref|ZP_08049864.1| ribonuclease III [Streptococcus sp. C300]
gi|321279614|gb|EFX56654.1| ribonuclease III [Streptococcus sp. C300]
Length = 232
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + FEA +GAL LD DVA
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDK--DVA 136
>gi|419659778|ref|ZP_14190291.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|419667284|ref|ZP_14197262.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
gi|380638585|gb|EIB56135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|380646268|gb|EIB63243.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
Length = 224
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDTLEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 228
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL T RS G N N+RLE+LGD VL ++ +++L+ PE EG LS LR++LV
Sbjct: 19 LLTEALTHRSAGSPN-----NERLEYLGDAVLGMVMAEHLFKAHPEASEGDLSRLRATLV 73
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N + +V+ G+ N+ ++ R AD +EA +GA+Y+D G +A +F
Sbjct: 74 NKDSLAVIGKAQGLGGHINLGQGELKSGGARRNSILADAVEAVIGAVYLDSGFDAARRFV 133
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
+ RL+ DPK++LQ+ L G ++P+Y+V G + + +
Sbjct: 134 LALYADRLESLPALDALKDPKTRLQEW------LQGRSRELPVYEVTSVTGKAHEQRFRA 187
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
++ G S ++AE AA+ AL+
Sbjct: 188 LCRVGDQEY-PGEGTSRRRAEQAAAECALK 216
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + HLF P+ EG L+ RA +V LA + K GL + G
Sbjct: 41 GDAVLGMVMAEHLFKAHPEASEGDLSRLRATLVNKDSLAVIGKAQGLGGHINLGQGELKS 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-------------KDNEVRFKQ 199
+A+ EA++GA++LD G D A + F LY KD + R ++
Sbjct: 101 GGARRNSILADAVEAVIGAVYLDSGFDAARR-FVLALYADRLESLPALDALKDPKTRLQE 159
Query: 200 WM 201
W+
Sbjct: 160 WL 161
>gi|294507352|ref|YP_003571410.1| ribonuclease III [Salinibacter ruber M8]
gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8]
Length = 243
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 12/216 (5%)
Query: 248 RVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVN 305
R T RS+ + T SN+RLEFLGD +L + + LY+ FPE EG L+ LR+ LV+
Sbjct: 32 RALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDRFPEKDEGALTRLRARLVS 91
Query: 306 NRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCK 361
R + +G+ + + +D AD EAF+GA+Y+D G EA F +
Sbjct: 92 ERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAFVGAVYLDLGHEAARGFVQ 151
Query: 362 VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVA 421
+ + ++ KS+L + L G P P Y V+E GP++ +++TV
Sbjct: 152 DRVLAPVDLEDVATRDDNYKSQLLEHLQAL-----GRPQ-PTYHVVEEKGPSHDKTFTVE 205
Query: 422 VYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
V + + T S Q AE AA+ L + S P
Sbjct: 206 VRVGDADYERGTAGSKQDAEQQAARRTLDEMASDPP 241
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
F+ + L+ FP+ +EG L RA +V + LA A+ +GL +L + + +
Sbjct: 65 FVGEV-LYDRFPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNP 123
Query: 159 HAMANCFEALMGALFLDGGIDVA-----DQVFSSVLYKDNEVR---FK-------QWMYY 203
+A+ FEA +GA++LD G + A D+V + V +D R +K Q +
Sbjct: 124 SILADAFEAFVGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGR 183
Query: 204 PQ---HPLQEQEPDGDRQWV 220
PQ H ++E+ P D+ +
Sbjct: 184 PQPTYHVVEEKGPSHDKTFT 203
>gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500]
Length = 1043
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 29/268 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ +F + +L+ ++P+ EG L T R+ + N +L ++ + ++D + L
Sbjct: 710 GDSILKFCITYYLYFLYPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLG----LS 765
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ + K A+ EAL A++L+ GI+V + ++L+K V F
Sbjct: 766 NTEDYKKPKADVIEALFAAVYLECGINVVYEFIINLLFKIENVVF--------------- 810
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFN-HIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
P + ++PL E V+FN +I + +M ++ + QRLEFL
Sbjct: 811 PTYKCEHTNETPLS------ESQKSVLFNMNINIKDTCLFQEAMNCSSDPKMNYQRLEFL 864
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD+ + L+ S++LY++FP EG LS R+ LV N + N + + I+P V
Sbjct: 865 GDSYIDLVVSEFLYHNFPREQEGFLSQTRALLVRNEKLANTANHLRI---RQSIDPSVVP 921
Query: 332 KMKDRADLLEAFLGAMYIDKGMEACEQF 359
K DL E+F G + +D G++ + F
Sbjct: 922 TTKRMGDLFESFTGCLLLDGGLQDTKSF 949
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 241 NHIRLLARVFTTRSMGYTN--------------LTLGSNQRLEFLGDTVLQLITSDYLYN 286
N+ RLL VFT S+ N L NQRLE+ GD++L+ + YLY
Sbjct: 665 NNQRLLREVFTHPSINRNNTVPPRSLKVFKDYQLFKSDNQRLEYFGDSILKFCITYYLYF 724
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGA 346
+P EG L+ RS + +N +C+ + + + K +AD++EA A
Sbjct: 725 LYPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLGLSNTEDYKKPKADVIEALFAA 784
Query: 347 MYIDKGMEACEQF 359
+Y++ G+ +F
Sbjct: 785 VYLECGINVVYEF 797
>gi|304310579|ref|YP_003810177.1| ribonuclease III [gamma proteobacterium HdN1]
gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1]
Length = 231
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 112/232 (48%), Gaps = 21/232 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSM-GYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+KQ L G FN LL T RS+ G TN N+RLEFLGD+VL LI L
Sbjct: 1 MKQTSLLCSRIGYTFNDFNLLNLALTHRSVSGQTN-----NERLEFLGDSVLNLIIGGEL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR-----ADL 339
+ FP+ EG LS LR+SLV T + + + G+ F I+ P R AD
Sbjct: 56 FTKFPQGKEGQLSRLRASLVRGETLAQIGGEFGLGEFL-ILGPGEHKSGGARRESTLADA 114
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA +GA++ + G + F R+Q LN D K++LQ+ L+
Sbjct: 115 VEAIIGAIFCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEILQHLKM------ 168
Query: 400 DIPIYKVIEHVGPTNSRSYTV--AVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+P Y+++ G ++ + + + A+ ER A +G S +QAE AA AL
Sbjct: 169 GLPEYRILSVSGSSHQQVFQIECAITGVEERFA-GSGLSRRQAEQQAAGFAL 219
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I LF FP +EG L+ RA++V+ + LA + GL +F++ G
Sbjct: 43 GDSVLNLIIGGELFTKFPQGKEGQLSRLRASLVRGETLAQIGGEFGLGEFLILGPGEHKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL--------YKDNEVRFKQW 200
+ +A+ EA++GA+F + G + A +V F S + KDN+ R ++
Sbjct: 103 GGARRESTLADAVEAIIGAIFCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEI 162
Query: 201 MYYPQHPLQE 210
+ + + L E
Sbjct: 163 LQHLKMGLPE 172
>gi|148993857|ref|ZP_01823259.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
gi|149007089|ref|ZP_01830758.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
gi|149012300|ref|ZP_01833369.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
gi|149019239|ref|ZP_01834601.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
gi|168486568|ref|ZP_02711076.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
gi|168489075|ref|ZP_02713274.1| ribonuclease III [Streptococcus pneumoniae SP195]
gi|182684025|ref|YP_001835772.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
gi|225854713|ref|YP_002736225.1| ribonuclease III [Streptococcus pneumoniae JJA]
gi|225859042|ref|YP_002740552.1| ribonuclease III [Streptococcus pneumoniae 70585]
gi|303254257|ref|ZP_07340366.1| ribonuclease III [Streptococcus pneumoniae BS455]
gi|303258883|ref|ZP_07344862.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
gi|303261566|ref|ZP_07347513.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
gi|303264237|ref|ZP_07350157.1| ribonuclease III [Streptococcus pneumoniae BS397]
gi|303266132|ref|ZP_07352025.1| ribonuclease III [Streptococcus pneumoniae BS457]
gi|303268141|ref|ZP_07353941.1| ribonuclease III [Streptococcus pneumoniae BS458]
gi|307127162|ref|YP_003879193.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
gi|387759308|ref|YP_006066286.1| ribonuclease III [Streptococcus pneumoniae INV200]
gi|410476655|ref|YP_006743414.1| ribonuclease III [Streptococcus pneumoniae gamPNI0373]
gi|417676982|ref|ZP_12326391.1| ribonuclease III [Streptococcus pneumoniae GA17545]
gi|417679207|ref|ZP_12328604.1| ribonuclease III [Streptococcus pneumoniae GA17570]
gi|418094054|ref|ZP_12731181.1| ribonuclease III [Streptococcus pneumoniae GA49138]
gi|418096336|ref|ZP_12733449.1| ribonuclease III [Streptococcus pneumoniae GA16531]
gi|418102961|ref|ZP_12740035.1| ribonuclease III [Streptococcus pneumoniae NP070]
gi|418112591|ref|ZP_12749591.1| ribonuclease III [Streptococcus pneumoniae GA41538]
gi|418125884|ref|ZP_12762792.1| ribonuclease III [Streptococcus pneumoniae GA44511]
gi|418132058|ref|ZP_12768933.1| ribonuclease III [Streptococcus pneumoniae GA11304]
gi|418139526|ref|ZP_12776353.1| ribonuclease III [Streptococcus pneumoniae GA13338]
gi|418141807|ref|ZP_12778620.1| ribonuclease III [Streptococcus pneumoniae GA13455]
gi|418152964|ref|ZP_12789703.1| ribonuclease III [Streptococcus pneumoniae GA16121]
gi|418155239|ref|ZP_12791968.1| ribonuclease III [Streptococcus pneumoniae GA16242]
gi|418164556|ref|ZP_12801226.1| ribonuclease III [Streptococcus pneumoniae GA17371]
gi|418180639|ref|ZP_12817209.1| ribonuclease III [Streptococcus pneumoniae GA41688]
gi|418185047|ref|ZP_12821591.1| ribonuclease III [Streptococcus pneumoniae GA47283]
gi|418191800|ref|ZP_12828303.1| ribonuclease III [Streptococcus pneumoniae GA47388]
gi|418214431|ref|ZP_12841166.1| ribonuclease III [Streptococcus pneumoniae GA54644]
gi|418225636|ref|ZP_12852264.1| ribonuclease III [Streptococcus pneumoniae NP112]
gi|418234444|ref|ZP_12861022.1| ribonuclease III [Streptococcus pneumoniae GA08780]
gi|419466647|ref|ZP_14006530.1| ribonuclease III [Streptococcus pneumoniae GA05248]
gi|419475625|ref|ZP_14015465.1| ribonuclease III [Streptococcus pneumoniae GA14688]
gi|419484472|ref|ZP_14024248.1| ribonuclease III [Streptococcus pneumoniae GA43257]
gi|419486779|ref|ZP_14026543.1| ribonuclease III [Streptococcus pneumoniae GA44128]
gi|419493399|ref|ZP_14033125.1| ribonuclease III [Streptococcus pneumoniae GA47210]
gi|419508315|ref|ZP_14047968.1| ribonuclease III [Streptococcus pneumoniae GA49542]
gi|419509825|ref|ZP_14049469.1| ribonuclease III [Streptococcus pneumoniae NP141]
gi|419514656|ref|ZP_14054281.1| ribonuclease III [Streptococcus pneumoniae England14-9]
gi|419516870|ref|ZP_14056486.1| ribonuclease III [Streptococcus pneumoniae GA02506]
gi|419519010|ref|ZP_14058616.1| ribonuclease III [Streptococcus pneumoniae GA08825]
gi|419530129|ref|ZP_14069660.1| ribonuclease III [Streptococcus pneumoniae GA40028]
gi|421209085|ref|ZP_15666100.1| ribonuclease III [Streptococcus pneumoniae 2070005]
gi|421213299|ref|ZP_15670256.1| ribonuclease III [Streptococcus pneumoniae 2070108]
gi|421215545|ref|ZP_15672466.1| ribonuclease III [Streptococcus pneumoniae 2070109]
gi|421220397|ref|ZP_15677241.1| ribonuclease III [Streptococcus pneumoniae 2070425]
gi|421222707|ref|ZP_15679493.1| ribonuclease III [Streptococcus pneumoniae 2070531]
gi|421225122|ref|ZP_15681862.1| ribonuclease III [Streptococcus pneumoniae 2070768]
gi|421234222|ref|ZP_15690842.1| ribonuclease III [Streptococcus pneumoniae 2061617]
gi|421249533|ref|ZP_15705991.1| ribonuclease III [Streptococcus pneumoniae 2082239]
gi|421268539|ref|ZP_15719409.1| ribonuclease III [Streptococcus pneumoniae SPAR95]
gi|421279023|ref|ZP_15729830.1| ribonuclease III [Streptococcus pneumoniae GA17301]
gi|421289847|ref|ZP_15740598.1| ribonuclease III [Streptococcus pneumoniae GA54354]
gi|421294113|ref|ZP_15744836.1| ribonuclease III [Streptococcus pneumoniae GA56113]
gi|421295927|ref|ZP_15746639.1| ribonuclease III [Streptococcus pneumoniae GA58581]
gi|421301110|ref|ZP_15751780.1| ribonuclease III [Streptococcus pneumoniae GA19998]
gi|421305166|ref|ZP_15755822.1| ribonuclease III [Streptococcus pneumoniae GA62331]
gi|444388194|ref|ZP_21186184.1| ribonuclease III [Streptococcus pneumoniae PCS125219]
gi|444389638|ref|ZP_21187553.1| ribonuclease III [Streptococcus pneumoniae PCS70012]
gi|444391946|ref|ZP_21189707.1| ribonuclease III [Streptococcus pneumoniae PCS81218]
gi|444395175|ref|ZP_21192721.1| ribonuclease III [Streptococcus pneumoniae PNI0002]
gi|444397700|ref|ZP_21195183.1| ribonuclease III [Streptococcus pneumoniae PNI0006]
gi|444400182|ref|ZP_21197598.1| ribonuclease III [Streptococcus pneumoniae PNI0007]
gi|444402660|ref|ZP_21199818.1| ribonuclease III [Streptococcus pneumoniae PNI0008]
gi|444404707|ref|ZP_21201652.1| ribonuclease III [Streptococcus pneumoniae PNI0009]
gi|444407320|ref|ZP_21203987.1| ribonuclease III [Streptococcus pneumoniae PNI0010]
gi|444416966|ref|ZP_21213031.1| ribonuclease III [Streptococcus pneumoniae PNI0360]
gi|444419213|ref|ZP_21215091.1| ribonuclease III [Streptococcus pneumoniae PNI0427]
gi|238691158|sp|B2IPN5.1|RNC_STRPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807901|sp|C1C7M6.1|RNC_STRP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807904|sp|C1CEK4.1|RNC_STRZJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|147761393|gb|EDK68359.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
gi|147763626|gb|EDK70561.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
gi|147927682|gb|EDK78707.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
gi|147931109|gb|EDK82088.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
gi|182629359|gb|ACB90307.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
gi|183570477|gb|EDT91005.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
gi|183572564|gb|EDT93092.1| ribonuclease III [Streptococcus pneumoniae SP195]
gi|225722013|gb|ACO17867.1| ribonuclease III [Streptococcus pneumoniae 70585]
gi|225722854|gb|ACO18707.1| ribonuclease III [Streptococcus pneumoniae JJA]
gi|301801897|emb|CBW34621.1| ribonuclease III [Streptococcus pneumoniae INV200]
gi|302598751|gb|EFL65788.1| ribonuclease III [Streptococcus pneumoniae BS455]
gi|302637146|gb|EFL67634.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
gi|302639826|gb|EFL70282.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
gi|302642358|gb|EFL72705.1| ribonuclease III [Streptococcus pneumoniae BS458]
gi|302644302|gb|EFL74556.1| ribonuclease III [Streptococcus pneumoniae BS457]
gi|302646049|gb|EFL76276.1| ribonuclease III [Streptococcus pneumoniae BS397]
gi|306484224|gb|ADM91093.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
gi|332073586|gb|EGI84065.1| ribonuclease III [Streptococcus pneumoniae GA17570]
gi|332074581|gb|EGI85055.1| ribonuclease III [Streptococcus pneumoniae GA17545]
gi|353764550|gb|EHD45098.1| ribonuclease III [Streptococcus pneumoniae GA49138]
gi|353769340|gb|EHD49858.1| ribonuclease III [Streptococcus pneumoniae GA16531]
gi|353775594|gb|EHD56074.1| ribonuclease III [Streptococcus pneumoniae NP070]
gi|353782953|gb|EHD63382.1| ribonuclease III [Streptococcus pneumoniae GA41538]
gi|353796665|gb|EHD77004.1| ribonuclease III [Streptococcus pneumoniae GA44511]
gi|353806058|gb|EHD86332.1| ribonuclease III [Streptococcus pneumoniae GA13455]
gi|353807724|gb|EHD87993.1| ribonuclease III [Streptococcus pneumoniae GA11304]
gi|353817515|gb|EHD97717.1| ribonuclease III [Streptococcus pneumoniae GA16121]
gi|353820617|gb|EHE00800.1| ribonuclease III [Streptococcus pneumoniae GA16242]
gi|353829417|gb|EHE09548.1| ribonuclease III [Streptococcus pneumoniae GA17371]
gi|353845341|gb|EHE25383.1| ribonuclease III [Streptococcus pneumoniae GA41688]
gi|353849366|gb|EHE29372.1| ribonuclease III [Streptococcus pneumoniae GA47283]
gi|353856873|gb|EHE36840.1| ribonuclease III [Streptococcus pneumoniae GA47388]
gi|353871714|gb|EHE51585.1| ribonuclease III [Streptococcus pneumoniae GA54644]
gi|353880833|gb|EHE60647.1| ribonuclease III [Streptococcus pneumoniae NP112]
gi|353887735|gb|EHE67512.1| ribonuclease III [Streptococcus pneumoniae GA08780]
gi|353905386|gb|EHE80821.1| ribonuclease III [Streptococcus pneumoniae GA13338]
gi|379544770|gb|EHZ09914.1| ribonuclease III [Streptococcus pneumoniae GA05248]
gi|379561170|gb|EHZ26191.1| ribonuclease III [Streptococcus pneumoniae GA14688]
gi|379574869|gb|EHZ39807.1| ribonuclease III [Streptococcus pneumoniae GA40028]
gi|379583983|gb|EHZ48860.1| ribonuclease III [Streptococcus pneumoniae GA43257]
gi|379586488|gb|EHZ51339.1| ribonuclease III [Streptococcus pneumoniae GA44128]
gi|379593574|gb|EHZ58386.1| ribonuclease III [Streptococcus pneumoniae GA47210]
gi|379612033|gb|EHZ76755.1| ribonuclease III [Streptococcus pneumoniae GA49542]
gi|379633018|gb|EHZ97587.1| ribonuclease III [Streptococcus pneumoniae NP141]
gi|379635205|gb|EHZ99763.1| ribonuclease III [Streptococcus pneumoniae England14-9]
gi|379638943|gb|EIA03487.1| ribonuclease III [Streptococcus pneumoniae GA02506]
gi|379640847|gb|EIA05385.1| ribonuclease III [Streptococcus pneumoniae GA08825]
gi|395574147|gb|EJG34729.1| ribonuclease III [Streptococcus pneumoniae 2070005]
gi|395579531|gb|EJG40029.1| ribonuclease III [Streptococcus pneumoniae 2070108]
gi|395579752|gb|EJG40247.1| ribonuclease III [Streptococcus pneumoniae 2070109]
gi|395587513|gb|EJG47860.1| ribonuclease III [Streptococcus pneumoniae 2070425]
gi|395587769|gb|EJG48111.1| ribonuclease III [Streptococcus pneumoniae 2070531]
gi|395589817|gb|EJG50133.1| ribonuclease III [Streptococcus pneumoniae 2070768]
gi|395601170|gb|EJG61319.1| ribonuclease III [Streptococcus pneumoniae 2061617]
gi|395613877|gb|EJG73902.1| ribonuclease III [Streptococcus pneumoniae 2082239]
gi|395870034|gb|EJG81148.1| ribonuclease III [Streptococcus pneumoniae SPAR95]
gi|395879635|gb|EJG90692.1| ribonuclease III [Streptococcus pneumoniae GA17301]
gi|395889088|gb|EJH00099.1| ribonuclease III [Streptococcus pneumoniae GA54354]
gi|395894403|gb|EJH05383.1| ribonuclease III [Streptococcus pneumoniae GA56113]
gi|395897140|gb|EJH08104.1| ribonuclease III [Streptococcus pneumoniae GA58581]
gi|395898670|gb|EJH09614.1| ribonuclease III [Streptococcus pneumoniae GA19998]
gi|395905828|gb|EJH16733.1| ribonuclease III [Streptococcus pneumoniae GA62331]
gi|406369600|gb|AFS43290.1| ribonuclease III [Streptococcus pneumoniae gamPNI0373]
gi|444250344|gb|ELU56825.1| ribonuclease III [Streptococcus pneumoniae PCS125219]
gi|444256101|gb|ELU62439.1| ribonuclease III [Streptococcus pneumoniae PCS70012]
gi|444258494|gb|ELU64816.1| ribonuclease III [Streptococcus pneumoniae PNI0002]
gi|444260357|gb|ELU66665.1| ribonuclease III [Streptococcus pneumoniae PNI0006]
gi|444264202|gb|ELU70303.1| ribonuclease III [Streptococcus pneumoniae PCS81218]
gi|444266147|gb|ELU72118.1| ribonuclease III [Streptococcus pneumoniae PNI0008]
gi|444267040|gb|ELU72960.1| ribonuclease III [Streptococcus pneumoniae PNI0007]
gi|444270916|gb|ELU76667.1| ribonuclease III [Streptococcus pneumoniae PNI0010]
gi|444276329|gb|ELU81895.1| ribonuclease III [Streptococcus pneumoniae PNI0009]
gi|444284727|gb|ELU89844.1| ribonuclease III [Streptococcus pneumoniae PNI0360]
gi|444287260|gb|ELU92193.1| ribonuclease III [Streptococcus pneumoniae PNI0427]
Length = 232
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|317511632|ref|ZP_07968930.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|384448848|ref|YP_005656899.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|403056346|ref|YP_006633751.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407942970|ref|YP_006858617.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
gi|415731373|ref|ZP_11473447.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|419620986|ref|ZP_14154381.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|419623819|ref|ZP_14156940.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|419625061|ref|ZP_14158085.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|419628386|ref|ZP_14161245.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|419629909|ref|ZP_14162621.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|419630965|ref|ZP_14163565.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|419633703|ref|ZP_14166131.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|419635954|ref|ZP_14168241.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|419637815|ref|ZP_14169964.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|419639421|ref|ZP_14171450.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|419645376|ref|ZP_14176925.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|419647079|ref|ZP_14178522.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|419649109|ref|ZP_14180411.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|419650140|ref|ZP_14181366.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|419651560|ref|ZP_14182656.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|419656399|ref|ZP_14187201.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|419658399|ref|ZP_14189029.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|419661780|ref|ZP_14192099.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|419663951|ref|ZP_14194134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|419671772|ref|ZP_14201414.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|419673128|ref|ZP_14202607.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|419675820|ref|ZP_14205079.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|419677786|ref|ZP_14206919.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|419679551|ref|ZP_14208544.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|419681434|ref|ZP_14210268.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|419684794|ref|ZP_14213374.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|419687924|ref|ZP_14216256.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|419690916|ref|ZP_14219105.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|419696155|ref|ZP_14224025.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|424849058|ref|ZP_18273527.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|22654076|sp|Q9PM40.1|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|356487695|gb|EHI17637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|380597882|gb|EIB18338.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|380599969|gb|EIB20317.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|380604482|gb|EIB24496.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|380605405|gb|EIB25378.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|380606913|gb|EIB26800.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|380611214|gb|EIB30771.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|380611347|gb|EIB30900.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|380611932|gb|EIB31472.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|380614766|gb|EIB34092.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|380616423|gb|EIB35627.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|380620465|gb|EIB39355.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|380621996|gb|EIB40766.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|380625526|gb|EIB44108.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|380628846|gb|EIB47133.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|380631159|gb|EIB49369.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|380633483|gb|EIB51436.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|380635405|gb|EIB53222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|380639431|gb|EIB56924.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|380641974|gb|EIB59278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|380648961|gb|EIB65749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|380651181|gb|EIB67749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|380653448|gb|EIB69868.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|380654393|gb|EIB70755.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|380657044|gb|EIB73153.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|380658109|gb|EIB74142.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|380666172|gb|EIB81720.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|380666470|gb|EIB82007.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|380668031|gb|EIB83415.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|380675351|gb|EIB90258.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|401781998|emb|CCK67709.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407906808|gb|AFU43637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
Length = 224
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855]
gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855]
Length = 248
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 104/216 (48%), Gaps = 12/216 (5%)
Query: 248 RVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVN 305
R T RS+ + T SN+RLEFLGD +L + + LY+ FPE EG L+ LR+ LV+
Sbjct: 37 RALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDRFPEKDEGALTRLRARLVS 96
Query: 306 NRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCK 361
R + +G+ + + +D AD EAF+GA+Y+D G EA F +
Sbjct: 97 ERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAFVGAVYLDLGHEAARGFVQ 156
Query: 362 VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVA 421
+ + ++ KS+L + L G P P Y V+E GP++ +++TV
Sbjct: 157 DRVLAPVDLEDVATRDDNYKSQLLEHLQAL-----GRPQ-PTYHVVEEKGPSHDKTFTVE 210
Query: 422 VYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
V + + T S Q AE AA+ L + S P
Sbjct: 211 VRVGDAAYERGTAGSKQDAEQQAARRTLDEMASDPP 246
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
F+ + L+ FP+ +EG L RA +V + LA A+ +GL +L + + +
Sbjct: 70 FVGEV-LYDRFPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNP 128
Query: 159 HAMANCFEALMGALFLDGGIDVA-----DQVFSSVLYKDNEVR---FK-------QWMYY 203
+A+ FEA +GA++LD G + A D+V + V +D R +K Q +
Sbjct: 129 SILADAFEAFVGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGR 188
Query: 204 PQ---HPLQEQEPDGDRQWV 220
PQ H ++E+ P D+ +
Sbjct: 189 PQPTYHVVEEKGPSHDKTFT 208
>gi|421227452|ref|ZP_15684156.1| ribonuclease III [Streptococcus pneumoniae 2072047]
gi|395595154|gb|EJG55388.1| ribonuclease III [Streptococcus pneumoniae 2072047]
Length = 232
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRNTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRNTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
Length = 224
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLERSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|146318845|ref|YP_001198557.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
gi|145689651|gb|ABP90157.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
Length = 196
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 11/195 (5%)
Query: 260 LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP 319
L + N+RLEFLGD VLQL+ S YLY +P+ EG +S LRS+ V + + G
Sbjct: 6 LKISHNERLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFD 65
Query: 320 FFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ 375
F + + ++R D EAFLGA+ +DKG + E+F PRL+ +
Sbjct: 66 RFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNF-E 124
Query: 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGN 435
D K+ LQ+ GE I Y+VI GP + +++ V V + + G
Sbjct: 125 RVTDYKTALQEILQV-----NGEIAIS-YQVIAESGPAHDKTFEVEVSADQRVIGRGRGR 178
Query: 436 SIQQAEMNAAKVALQ 450
S + AE AAK A++
Sbjct: 179 SKKLAEQAAAKNAVE 193
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +PD EG ++ R+ V+ + LA ++ G + F+ G +
Sbjct: 18 GDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKS 77
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV----LYKDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD G ++ V L K N R + Q L
Sbjct: 78 GGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEIL 137
Query: 209 Q 209
Q
Sbjct: 138 Q 138
>gi|392411929|ref|YP_006448536.1| ribonuclease III [Desulfomonile tiedjei DSM 6799]
gi|390625065|gb|AFM26272.1| ribonuclease III [Desulfomonile tiedjei DSM 6799]
Length = 247
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 12/228 (5%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
Q +E G FN+ L T RS + N + N+RLEFLGD VL L+ ++ LY
Sbjct: 10 QEIELILGHAFNNNGHLLAALTRRSFWHENRGFCIRHNERLEFLGDAVLGLVIAEILYRE 69
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
FP+ EG L R+SLVN + + + + F + +DR AD LEA
Sbjct: 70 FPKAEEGELQKKRASLVNRAALAQLMRRLNLAPFIRMGRGDELSGCRDRDSILADTLEAL 129
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ A+++D G K F+P ++ +D KS LQ+ + + P
Sbjct: 130 IAAVFLDGGFTKASDMIKQHFYPLIKRCSTRDGVDDCKSALQEKAQAVMGV------TPT 183
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+VI+ G + ++++VAV+ N TG + ++A NAA+ AL +
Sbjct: 184 YEVIDQWGEEHQKTFSVAVFLGNHMAGLGTGRNKREAAQNAAREALDR 231
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+ FP EEG L RA++V LA L +R+ L F+ G +L + +A+
Sbjct: 66 LYREFPKAEEGELQKKRASLVNRAALAQLMRRLNLAPFIRMGRGDELSGCRDRDSILADT 125
Query: 165 FEALMGALFLDGGIDVADQVFSSVLY 190
EAL+ A+FLDGG A + Y
Sbjct: 126 LEALIAAVFLDGGFTKASDMIKQHFY 151
>gi|419694651|ref|ZP_14222609.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
gi|380670012|gb|EIB85278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
Length = 224
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLE 341
+ F + EG LS LR++LVN ++ + + N ++G F ++ K K +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGNFIFMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L +F+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGNFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|421240779|ref|ZP_15697324.1| ribonuclease III [Streptococcus pneumoniae 2080913]
gi|395607157|gb|EJG67254.1| ribonuclease III [Streptococcus pneumoniae 2080913]
Length = 232
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEMITDYKTH-LQE 167
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 18/255 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
+ +LE + GV + LL R T RS Y N L +N+RLEFLGD+VL ++ + L+++
Sbjct: 11 IGHLEAAFGVSLDP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNH 69
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP-FFANIINPKVDLKMKDR------ADLLE 341
P+ EG L+ LR+S+VN R + V +G A ++ K + R AD LE
Sbjct: 70 PDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILADTLE 129
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A LGA+Y+ G++ F P + D K+ LQ+ L +
Sbjct: 130 ALLGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGL------GV 183
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDH 461
P Y+ IE GP + +++T V R A G S ++AE AA+ A ++ + Q +
Sbjct: 184 PEYR-IEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWRE---LTEQAER 239
Query: 462 QKRVIAKSIELQKHE 476
+ AK ++ ++ +
Sbjct: 240 DRAARAKQMQAEQEQ 254
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGS 149
G++ + + LFH PD+ EG LA RA++V + LA +A+ + GL ++L G
Sbjct: 53 GDSVLGVVITTALFHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGE 112
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + +A+ EAL+GA++L G+D A
Sbjct: 113 ESTGGRDKASILADTLEALLGAIYLQYGLDTA 144
>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|419617831|ref|ZP_14151397.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|419654145|ref|ZP_14185094.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|419665962|ref|ZP_14196014.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|419668873|ref|ZP_14198676.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|419687215|ref|ZP_14215623.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|419691430|ref|ZP_14219550.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|380596428|gb|EIB17120.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|380631711|gb|EIB49874.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|380642199|gb|EIB59482.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|380648273|gb|EIB65135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|380662839|gb|EIB78523.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|380672387|gb|EIB87559.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
Length = 224
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLERSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLE 341
+ F + EG LS LR++LVN ++ + + N ++G F ++ K K +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 14/224 (6%)
Query: 238 VIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
+ FN++ LL F RS N + +N+RLEFLGD+VL + T+ YLY + ++ EG
Sbjct: 31 IKFNNLELLDLAFHHRSFSNENSSHQHLNNERLEFLGDSVLGMATATYLYENLSDNPEGE 90
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL-----KMKDRADLLEAFLGAMYID 350
L+ ++S +V+ T + + IG+ ++ ++ K AD +EA GA Y+D
Sbjct: 91 LAKIKSVVVSEETLAPIAVKIGIDRML-VLGKGEEMSGGRQKKAILADAVEALFGAYYLD 149
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G EA ++ P ++ + N+ D KS LQ+ + P+Y++++
Sbjct: 150 TGYEAVQKLVLSFIAPEVRKVLENKGHKDYKSLLQEW------YQKKYKECPVYELVKKS 203
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
GP + + + V V+ K A G S ++AE NAAK A ++ S
Sbjct: 204 GPEHDKVFWVTVHLKGASYGPAQGKSKKEAEQNAAKAAYEELTS 247
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ T+ +L+ D EG LA ++ +V + LA +A +IG++ ++ G ++
Sbjct: 67 GDSVLGMATATYLYENLSDNPEGELAKIKSVVVSEETLAPIAVKIGIDRMLVLGKGEEMS 126
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ K +A+ EAL GA +LD G + ++ S +
Sbjct: 127 GGRQKKAILADAVEALFGAYYLDTGYEAVQKLVLSFI 163
>gi|374334746|ref|YP_005091433.1| ribonuclease III [Oceanimonas sp. GK1]
gi|372984433|gb|AEY00683.1| ribonuclease III [Oceanimonas sp. GK1]
Length = 222
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 19/201 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K+L L+ G FN LL R T RS G + N+RLEFLGD++L ++ +D L+
Sbjct: 1 MKKLNNLQKQLGHTFNDEALLVRALTHRSAGSRH-----NERLEFLGDSILSMVIADALF 55
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD------RADL 339
+ FP+ +EG +S +R++LV +T + + + + I+ P +LK AD
Sbjct: 56 HRFPKVNEGDMSRMRATLVREKTLAELARAFELGEYL-ILGPG-ELKSGGYRRESILADA 113
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA +GA+Y+D G+E Q + RL E DPK++LQ+ L G
Sbjct: 114 VEALIGAIYLDSGIERITQLLLSWYDSRLNDIQPGVEQKDPKTRLQEL------LQGKRK 167
Query: 400 DIPIYKVIEHVGPTNSRSYTV 420
+P Y+V++ +G +++ +TV
Sbjct: 168 PLPTYEVVDVIGEAHNQKFTV 188
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + LFH FP + EG ++ RA +V+ + LA LA+ L ++++ G
Sbjct: 42 GDSILSMVIADALFHRFPKVNEGDMSRMRATLVREKTLAELARAFELGEYLILGPGELKS 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSS------------VLYKDNEVRFKQW 200
+ +A+ EAL+GA++LD GI+ Q+ S V KD + R ++
Sbjct: 102 GGYRRESILADAVEALIGAIYLDSGIERITQLLLSWYDSRLNDIQPGVEQKDPKTRLQEL 161
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 162 LQGKRKPL 169
>gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118]
gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|385840297|ref|YP_005863621.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
salivarius CECT 5713]
gi|417788145|ref|ZP_12435828.1| ribonuclease III [Lactobacillus salivarius NIAS840]
gi|122449142|sp|Q1WUA0.1|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118]
gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
salivarius CECT 5713]
gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|334308322|gb|EGL99308.1| ribonuclease III [Lactobacillus salivarius NIAS840]
Length = 232
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 114/234 (48%), Gaps = 23/234 (9%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT------LGSNQRLEFLGDTVLQLITSDY 283
+ L+ + F + LL FT S Y N T L +R+EFLGD V+QL S+Y
Sbjct: 7 EMLKRDFNITFKDVDLLDAAFTHAS--YVNETPERKKKLKYYERIEFLGDAVMQLCVSEY 64
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
+Y H+PE EG +S LR+++V R S I F I K + K R
Sbjct: 65 IYEHYPEMPEGKMSRLRAAMV--RADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLC 122
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D+G + +F FP+L+ + D K++LQ+ G
Sbjct: 123 DIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDH-MMDNKTELQEVLQQ-----NG 176
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
E I Y + GP N R YT+ V NE + + TG + + AE AA AL+K
Sbjct: 177 ECKIK-YNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKK 229
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P++ EG ++ RAA+V+ + A +++ G +
Sbjct: 53 GDAVMQLCVSEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKG 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + + + FE+ +GAL+LD G D + S V++ E+ + M + LQE
Sbjct: 113 NARQRPSLLCDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQE 170
>gi|374986247|ref|YP_004961742.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
Length = 276
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 17/199 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 39 LLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVV 98
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+DKG++A +
Sbjct: 99 NSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDKGLDAAAELV 158
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ T +P Y V E GP + ++
Sbjct: 159 HRLFDPLIDRSSNLGAGLDW---KTSLQELTATEGL------GVPEYLVSE-TGPDHEKT 208
Query: 418 YTVAVYFKNERLAKATGNS 436
+T A TG S
Sbjct: 209 FTAAARVGGVAYGTGTGRS 227
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ + PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 66 GDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGT 125
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ + + E+
Sbjct: 126 GGRDKASILADTLEAVIGAVYLDKGLDAAAELVHRLFDPLIDRSSNLGAGLDWKTSLQEL 185
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 186 TATEGLGVPEYLVSETGPDHEKTFT 210
>gi|352518402|ref|YP_004887719.1| ribonuclease III [Tetragenococcus halophilus NBRC 12172]
gi|348602509|dbj|BAK95555.1| ribonuclease III [Tetragenococcus halophilus NBRC 12172]
Length = 231
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 17/221 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYL 284
L+ L+ + ++F+ + LL + FT S Y N L L N+RLEFLGD VL+L+ S +L
Sbjct: 6 LKELKENFSIVFHDVNLLNQAFTHSS--YVNEHRQLQLSDNERLEFLGDAVLELLVSRFL 63
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y + + EG L+ LR+++V + + + + + + + R DL
Sbjct: 64 YFQYQDVPEGTLTKLRAAIVREDSLASFAKECHFDRYIALGKGEEHSGGRQRLALLCDLF 123
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EAFLGA+YID+G+E E+F ++ +P++ + E D K++LQ+ L
Sbjct: 124 EAFLGALYIDQGLEKVEKFLEMVIYPKVVSGTFSHEM-DYKTRLQE------VLQRSGDR 176
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
I Y++++ GP + R + + VY +E + K G S + AE
Sbjct: 177 IIDYRLVKEEGPAHERLFWIEVYCDDELVGKGHGKSKKIAE 217
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S L+ + D+ EG L RAAIV+ LA AK + ++ G +
Sbjct: 51 GDAVLELLVSRFLYFQYQDVPEGTLTKLRAAIVREDSLASFAKECHFDRYIALGKGEEHS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
+ + + FEA +GAL++D G++ ++ V+Y K F M Y +
Sbjct: 111 GGRQRLALLCDLFEAFLGALYIDQGLEKVEKFLEMVIYPKVVSGTFSHEMDYKTRLQEVL 170
Query: 212 EPDGDR 217
+ GDR
Sbjct: 171 QRSGDR 176
>gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
gi|404489084|ref|YP_006713190.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385589|sp|Q65JQ5.1|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52348075|gb|AAU40709.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
Length = 249
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 17/234 (7%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 282
+Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 18 EQFKKFQERISVQFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTISQ 75
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
+LY +P EG L+ LR+++V + + +++ + + + R AD
Sbjct: 76 FLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLAD 135
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+ EAF+GA+Y+D+G+EA F K FP++ + D KS+LQ+ DG
Sbjct: 136 VFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSH-VMDFKSQLQEFV----QRDG-- 188
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
I YK+++ GP ++R + V K E L +G S ++AE +AA+ AL K
Sbjct: 189 RGILEYKILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAAIV L LA + + +L G ++
Sbjct: 65 GDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ FEA +GAL+LD G++
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLEA 152
>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
Length = 231
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 16/219 (7%)
Query: 240 FNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
F ++LL + FT S Y N T+ N+RLEFLGD VLQL+ S+YL+ +P EG
Sbjct: 17 FKQLKLLKQAFTHTS--YVNEHKHGTIEHNERLEFLGDAVLQLLVSEYLFAAYPNRPEGE 74
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDK 351
L+ +R+S+V + + + + + + L + R ADL EAF+GA+++D
Sbjct: 75 LTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLADLFEAFVGAIFLDA 134
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G+E F + FP ++ D KSKLQ+ R G + Y+++E G
Sbjct: 135 GIERTRAFLETHMFPYIESNDYGLLVKDFKSKLQE-----RAQHKGLGAVE-YRIMEERG 188
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P + R + V V +G + ++AE AA VA Q
Sbjct: 189 PAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAAAVAWQ 227
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P+ EG L RA++V LA A+R+ L + G +
Sbjct: 51 GDAVLQLLVSEYLFAAYPNRPEGELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQL 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ FEA +GA+FLD GI+
Sbjct: 111 GGRQRPALLADLFEAFVGAIFLDAGIE 137
>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|384442208|ref|YP_005658511.1| ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|415746574|ref|ZP_11475582.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|419641678|ref|ZP_14173557.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|419643328|ref|ZP_14175076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|419697815|ref|ZP_14225542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
gi|189043300|sp|A8FNU7.1|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|380616054|gb|EIB35273.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|380622316|gb|EIB41076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|380676845|gb|EIB91721.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
Length = 224
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
Length = 248
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 117/235 (49%), Gaps = 24/235 (10%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTL--GSNQRLEFLGDTVLQLITSDYLYN 286
L LE S GV F + LL + S N T GSN+R+EFLGD VL +I +D LY+
Sbjct: 15 LTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRLYH 74
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN----------PKVDLKMKDR 336
FP+ EG L+ RS LV R +S+V +G+ N+ N K K +
Sbjct: 75 DFPDIQEGDLTRFRSLLV--RRESLVRVALGI----NLGNYLYLGRGEDVSKGRFKPANL 128
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
A EA L A+YIDKG++ + F ++ D KS+LQ+ +
Sbjct: 129 AGAFEAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRLQELIQAQMQM-- 186
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y++ GP ++R + VY +++ LA+ +G S ++AE +AAK ALQ+
Sbjct: 187 ----TPRYRITNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAAKAALQQ 237
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
I + L+H FPDI+EG L +R+ +V+ + L +A I L +++ G D+
Sbjct: 67 IFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYLGRGEDVSKGRFKPA 126
Query: 160 AMANCFEALMGALFLDGGIDVADQV 184
+A FEA++ A+++D GID+ +V
Sbjct: 127 NLAGAFEAVLAAIYIDKGIDITREV 151
>gi|419683175|ref|ZP_14211884.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|380659791|gb|EIB75756.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
Length = 224
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLMHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGEI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
gi|333904610|ref|YP_004478481.1| ribonuclease III [Streptococcus parauberis KCTC 11537]
gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
gi|333119875|gb|AEF24809.1| ribonuclease III [Streptococcus parauberis KCTC 11537]
gi|456370486|gb|EMF49382.1| Ribonuclease III [Streptococcus parauberis KRS-02109]
gi|457095933|gb|EMG26404.1| Ribonuclease III [Streptococcus parauberis KRS-02083]
Length = 230
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 119/240 (49%), Gaps = 24/240 (10%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L+ S + F LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEVLLKDSFDITFADRNLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P EG +S RS +V R +S+ F I K + K R
Sbjct: 59 SEYLFEKYPNKAEGDMSKQRSMIV--REESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E +F P+++ Q D K+ LQ+ +
Sbjct: 117 ILGDLFEAFLGALLLDKGVEKVRKFLYQVMIPQVEKGTFEQVM-DYKTNLQELLQS---- 171
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ DI I Y+VI GP + + + VAV + L++ G S + AE AAK AL++
Sbjct: 172 ---QGDIIIDYQVISEEGPAHDKVFEVAVLSNEKTLSQGKGKSKKLAEQAAAKNALEQLK 228
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P+ EG ++ R+ IV+ + LA ++ ++++ G +
Sbjct: 50 GDAVLQLIISEYLFEKYPNKAEGDMSKQRSMIVREESLAGFSRFCTFDNYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYP---QHPL 208
+ + FEA +GAL LD G++ + V+ E F+Q M Y Q L
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEKVRKFLYQVMIPQVEKGTFEQVMDYKTNLQELL 169
Query: 209 QEQ 211
Q Q
Sbjct: 170 QSQ 172
>gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 236
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 111/212 (52%), Gaps = 13/212 (6%)
Query: 245 LLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
LL FT S + + L +RLEFLGD VLQLI S+Y++ +P+ +G L+ LR++
Sbjct: 22 LLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTRLRAA 81
Query: 303 LVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQ 358
+VN ++ S + + + + +DR D+ E+F+GA+Y+D+G E
Sbjct: 82 MVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVGALYLDQGKTVVEG 141
Query: 359 FCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSY 418
F + FP+L + + + D K++LQ+ G DI Y++++ GP N R +
Sbjct: 142 FVQQVIFPKLDEGMFAK-FFDHKTELQELAQA-----DGPVDID-YELVDEYGPDNDRLF 194
Query: 419 TVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
V V ++ L G+S + AE AA+ AL+
Sbjct: 195 KVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S ++F +P + +G L RAA+V Q + A+ ++ G +
Sbjct: 51 GDAVLQLIVSEYIFKRYPKLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G V + V++
Sbjct: 111 GARDRDSLLCDIFESFVGALYLDQGKTVVEGFVQQVIF 148
>gi|381151474|ref|ZP_09863343.1| ribonuclease III [Methylomicrobium album BG8]
gi|380883446|gb|EIC29323.1| ribonuclease III [Methylomicrobium album BG8]
Length = 227
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 20/233 (8%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
++++ + L + G+ FN+ L + T RS G N N+RLEFLGD++L + ++ L
Sbjct: 1 MIREPKILSRNLGLTFNNPELFSTALTHRSAGAKN-----NERLEFLGDSILGFVIAEIL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD------RAD 338
Y F E EG LS LR++LVN + + + F ++ +LK +D
Sbjct: 56 YEKFSEAPEGVLSRLRANLVNQASLAELAR--AHRFGDYLLLGSGELKSGGFRRESILSD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
LEA +GA+++D+G+EAC+Q+ + F +LQ L+ DPK++LQ+ + R
Sbjct: 114 ALEAVIGALFLDQGIEACKQWIRHLFQEKLQALTLDNWQKDPKTQLQELMQSKRV----- 168
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAK-ATGNSIQQAEMNAAKVALQ 450
++P Y ++ G + +++ V + A TG S ++AE AA+ LQ
Sbjct: 169 -ELPEYTLLTMSGLPHQQTFKVKCTIPLLKDASIGTGVSRKRAEQAAAEKMLQ 220
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+ F + EG L+ RA +V LA LA+ D++L G
Sbjct: 43 GDSILGFVIAEILYEKFSEAPEGVLSRLRANLVNQASLAELARAHRFGDYLLLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ +++ EA++GALFLD GI+ Q + K + W P+ LQE
Sbjct: 103 GGFRRESILSDALEAVIGALFLDQGIEACKQWIRHLFQEKLQALTLDNWQKDPKTQLQE 161
>gi|423682137|ref|ZP_17656976.1| ribonuclease III [Bacillus licheniformis WX-02]
gi|383438911|gb|EID46686.1| ribonuclease III [Bacillus licheniformis WX-02]
Length = 253
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 17/234 (7%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 282
+Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 22 EQFKKFQERISVQFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTISQ 79
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
+LY +P EG L+ LR+++V + + +++ + + + R AD
Sbjct: 80 FLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLAD 139
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+ EAF+GA+Y+D+G+EA F K FP++ + D KS+LQ+ DG
Sbjct: 140 VFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSH-VMDFKSQLQEFV----QRDG-- 192
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
I YK+++ GP ++R + V K E L +G S ++AE +AA+ AL K
Sbjct: 193 RGILEYKILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 246
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAAIV L LA + + +L G ++
Sbjct: 69 GDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMT 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ FEA +GAL+LD G++
Sbjct: 129 GGRKRPALLADVFEAFIGALYLDQGLEA 156
>gi|419622547|ref|ZP_14155777.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
gi|380599261|gb|EIB19635.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
Length = 224
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALILDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|418966604|ref|ZP_13518330.1| ribonuclease III [Streptococcus mitis SK616]
gi|383346814|gb|EID24828.1| ribonuclease III [Streptococcus mitis SK616]
Length = 232
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|417810411|ref|ZP_12457090.1| ribonuclease III [Lactobacillus salivarius GJ-24]
gi|418961233|ref|ZP_13513120.1| ribonuclease III [Lactobacillus salivarius SMXD51]
gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|335349207|gb|EGM50707.1| ribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344900|gb|EIA33246.1| ribonuclease III [Lactobacillus salivarius SMXD51]
Length = 232
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 114/234 (48%), Gaps = 23/234 (9%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT------LGSNQRLEFLGDTVLQLITSDY 283
+ L+ + F + LL FT S Y N T L +R+EFLGD V+QL S+Y
Sbjct: 7 EMLKRDFDITFKDVDLLDAAFTHAS--YVNETPERKKKLKYYERIEFLGDAVMQLCVSEY 64
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
+Y H+PE EG +S LR+++V R S I F I K + K R
Sbjct: 65 IYEHYPEMPEGKMSRLRAAMV--RADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLC 122
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D+G + +F FP+L+ + D K++LQ+ G
Sbjct: 123 DIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDH-MMDNKTELQEVLQQ-----NG 176
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
E I Y + GP N R YT+ V NE + + TG + + AE AA AL+K
Sbjct: 177 ECKIK-YNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKK 229
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P++ EG ++ RAA+V+ + A +++ G +
Sbjct: 53 GDAVMQLCVSEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKG 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + + + FE+ +GAL+LD G D + S V++ E+ + M + LQE
Sbjct: 113 NARQRPSLLCDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQE 170
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 22/234 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYLYNHF 288
LE G+ F + LL + FT S Y N G N+RLEFLGD VL+L+ S++L+ +
Sbjct: 8 LEARLGITFRNASLLRQAFTHSS--YRNEHRGDVEDNERLEFLGDAVLELLVSEFLFRAY 65
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P EG L+ +R+++V + +G+ + + + + R AD+ EA +
Sbjct: 66 PRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMSGGRRRPSLLADVYEALI 125
Query: 345 GAMYIDKGMEACEQFCKVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
GA+++D+G+EA +F + FP R Q IL +D K+ LQ+ + G P
Sbjct: 126 GAIFLDQGLEAAREFLQRMMFPALQREQAPIL----DDYKTMLQEHVQKV----GLGP-- 175
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
Y++ + GP + R + V+ + + +G S ++AE +AA+ AL K ++
Sbjct: 176 LTYRITDERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAAREALMKLTAL 229
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S LF +P EG L RAAIV L A +GL+ ++ G ++
Sbjct: 49 GDAVLELLVSEFLFRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMS 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ +EAL+GA+FLD G++ A + +++
Sbjct: 109 GGRRRPSLLADVYEALIGAIFLDQGLEAAREFLQRMMF 146
>gi|421243175|ref|ZP_15699694.1| ribonuclease III [Streptococcus pneumoniae 2081074]
gi|395608763|gb|EJG68855.1| ribonuclease III [Streptococcus pneumoniae 2081074]
Length = 232
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTYLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + FEA +GAL LD DVA
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDK--DVA 136
>gi|15901109|ref|NP_345713.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
gi|111658429|ref|ZP_01409108.1| hypothetical protein SpneT_02000400 [Streptococcus pneumoniae
TIGR4]
gi|419482279|ref|ZP_14022070.1| ribonuclease III [Streptococcus pneumoniae GA40563]
gi|421247506|ref|ZP_15703992.1| ribonuclease III [Streptococcus pneumoniae 2082170]
gi|22654070|sp|Q97QG6.1|RNC_STRPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|14972730|gb|AAK75353.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
gi|379579819|gb|EHZ44716.1| ribonuclease III [Streptococcus pneumoniae GA40563]
gi|395614327|gb|EJG74348.1| ribonuclease III [Streptococcus pneumoniae 2082170]
Length = 232
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|424737014|ref|ZP_18165470.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|422948846|gb|EKU43222.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
Length = 254
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 283
Q + L++ + F + LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSS--YVNEHRRKLFTDNERLEFLGDAVLELSVSKY 79
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ +P EG L+ LR+S+V + + N++G F + + ++R AD+
Sbjct: 80 LFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADV 139
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
E+F+GA+Y+D+ ++ F + FP+++ + D KS+LQ+ + +T +G
Sbjct: 140 FESFVGALYLDQDLQTVVSFLERVVFPKVEVGAFSHVM-DFKSQLQE--MVQQTNNG--- 193
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ Y++I+ GP ++R++ +V + L G S ++AE AA+ A++
Sbjct: 194 -LLHYEIIDEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA+IV L A +G F+L G +L
Sbjct: 68 GDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 195
E +A+ FE+ +GAL+LD + V++ EV
Sbjct: 128 GGRERPALLADVFESFVGALYLDQDLQTVVSFLERVVFPKVEV 170
>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
Length = 254
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 283
Q + L++ + F + LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 22 QFELLQHELNITFVNKNLLYQAFTHSS--YVNEHRRKLFTDNERLEFLGDAVLELSVSKY 79
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ +P EG L+ LR+S+V + + N++G F + + ++R AD+
Sbjct: 80 LFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADV 139
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
E+F+GA+Y+D+ ++ F + FP+++ + D KS+LQ+ + +T +G
Sbjct: 140 FESFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVM-DFKSQLQE--MVQQTNNG--- 193
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ Y++I+ GP ++R++ +V + L G S ++AE AA+ A++
Sbjct: 194 -LLHYEIIDEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA+IV L A +G F+L G +L
Sbjct: 68 GDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 195
E +A+ FE+ +GAL+LD + +++ EV
Sbjct: 128 GGRERPALLADVFESFVGALYLDQDLQTVVSFLERIVFPKVEV 170
>gi|383939627|ref|ZP_09992781.1| ribonuclease III [Streptococcus pseudopneumoniae SK674]
gi|418973026|ref|ZP_13521068.1| ribonuclease III [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383350582|gb|EID28447.1| ribonuclease III [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383712463|gb|EID69515.1| ribonuclease III [Streptococcus pseudopneumoniae SK674]
Length = 232
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVTKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVTKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|261416404|ref|YP_003250087.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
gi|385791265|ref|YP_005822388.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
gi|261372860|gb|ACX75605.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
gi|302326232|gb|ADL25433.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
Length = 270
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 18/228 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRS--MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
LE G F LLA RS +G +N+RLEFLGD+VL ++T+++LY +P
Sbjct: 23 LEAKLGYRFRDPELLAHALVHRSFLVGKDVPYASNNERLEFLGDSVLNMLTTEFLYRTYP 82
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAF 343
EG LS +S++V+ + + + + I K + KM R AD EA
Sbjct: 83 SDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKI--GKSEAKMGGRGKESILADAYEAV 140
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCL-TLRTLDGGEPDIP 402
LGA+Y+D G+E FPR+Q I ++ + KS+L + C LR P
Sbjct: 141 LGAVYLDGGLEEVRAILNKFHFPRVQEIISATDFVNYKSELLEFCQGKLRC-------SP 193
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y ++ GP + + +TV V + A+ G + ++AE A++++L+
Sbjct: 194 EYVIVGEEGPEHQKVFTVEVVVNGKSYARGQGPNKKKAEQEASRLSLE 241
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ +T+ L+ +P EG L+ ++AIV A +K L +++
Sbjct: 65 GDSVLNMLTTEFLYRTYPSDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKIGKSEAKM 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ +EA++GA++LDGG++
Sbjct: 125 GGRGKESILADAYEAVLGAVYLDGGLE 151
>gi|270292630|ref|ZP_06198841.1| ribonuclease III [Streptococcus sp. M143]
gi|270278609|gb|EFA24455.1| ribonuclease III [Streptococcus sp. M143]
Length = 232
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEVGDFEM-ITDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V +GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSEMGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + + V+ EV F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEVGDFEMITDYKTH-LQE 167
>gi|298245671|ref|ZP_06969477.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
gi|297553152|gb|EFH87017.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
Length = 251
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 12/230 (5%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+ L LE V F+ LL R T S S LEFLGD ++ +Y+Y
Sbjct: 7 IDNLLALEALLQVTFHDRSLLLRAITHHSCCTETALRDSYDTLEFLGDAIISAHVVEYIY 66
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM-PFF-ANIINPKV-DLKMKDR--ADLL 340
FP EG ++ L+S +V+ R +++ +G+ PF +I N + + + +D AD+L
Sbjct: 67 RSFPNASEGDMTALKSEVVSRRVFALIGQQLGLFPFIRVDIANLRTFNERSRDSLCADVL 126
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA++ID+G E F P ++ + + N PK +LQ+ L RT
Sbjct: 127 EALVGAIHIDQGSEVARDFVARAILPMVEQISVQADTN-PKGRLQKIILQ-RT-----GS 179
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+P Y+V+E G N R + V VY + L +SI++A AA+ AL+
Sbjct: 180 LPRYRVLEQSGRNNDRIFLVGVYDQETLLGLGKASSIKEAGRLAAREALE 229
>gi|223932807|ref|ZP_03624804.1| Ribonuclease III [Streptococcus suis 89/1591]
gi|302023944|ref|ZP_07249155.1| ribonuclease III [Streptococcus suis 05HAS68]
gi|330832996|ref|YP_004401821.1| ribonuclease III [Streptococcus suis ST3]
gi|386584385|ref|YP_006080788.1| ribonuclease III [Streptococcus suis D9]
gi|389856424|ref|YP_006358667.1| ribonuclease III [Streptococcus suis ST1]
gi|223898516|gb|EEF64880.1| Ribonuclease III [Streptococcus suis 89/1591]
gi|329307219|gb|AEB81635.1| ribonuclease III [Streptococcus suis ST3]
gi|353736531|gb|AER17540.1| ribonuclease III [Streptococcus suis D9]
gi|353740142|gb|AER21149.1| ribonuclease III [Streptococcus suis ST1]
Length = 228
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ + LL FT S Y N L + N+RLEFLGD VLQL+ S YLY +P+
Sbjct: 13 GIDFSDLNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDRP 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG +S LRS+ V + + G F + + ++R D EAFLGA+
Sbjct: 71 EGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALL 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+DKG + E+F PRL+ + D K+ LQ+ GE I Y+VI
Sbjct: 131 LDKGEKTVEEFIHKVMIPRLEKGNF-ERVTDYKTALQEILQV-----NGEIAIS-YQVIA 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP + +++ V V + + G S + AE AAK A++
Sbjct: 184 ESGPAHDKTFEVEVSADRRVIGRGRGRSKKLAEQAAAKNAVE 225
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +PD EG ++ R+ V+ + LA ++ G + F+ G +
Sbjct: 50 GDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV----LYKDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD G ++ V L K N R + Q L
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPRLEKGNFERVTDYKTALQEIL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>gi|385264719|ref|ZP_10042806.1| ribonuclease III [Bacillus sp. 5B6]
gi|385149215|gb|EIF13152.1| ribonuclease III [Bacillus sp. 5B6]
Length = 253
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 21 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 78
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 79 QFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 135
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E +QF KV FP++ + D KS+LQ+
Sbjct: 136 LLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVM-DFKSQLQEFVQR---- 190
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G+ + YK++ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 191 -DGKGSLE-YKILNEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAK 245
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 69 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ +A+ FEA +GAL+LD G++ Q ++ K N+ F M + LQE
Sbjct: 129 GGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQ-LQE 186
>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
Length = 254
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 283
Q + L++ + F + LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 22 QFELLQHELNITFINKNLLYQAFTHSS--YVNEHRRKLFTDNERLEFLGDAVLELSVSKY 79
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ +P EG L+ LR+S+V + + N++G F + + ++R AD+
Sbjct: 80 LFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADV 139
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
E+F+GA+Y+D+ ++ F + FP+++ + D KS+LQ+ + +T +G
Sbjct: 140 FESFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVM-DFKSQLQE--MVQQTNNG--- 193
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ Y++I+ GP ++R++ +V + L G S ++AE AA+ A++
Sbjct: 194 -LLHYEIIDEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA+IV L A +G F+L G +L
Sbjct: 68 GDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 195
E +A+ FE+ +GAL+LD + +++ EV
Sbjct: 128 GGRERPALLADVFESFVGALYLDQDLQTVVSFLERIVFPKVEV 170
>gi|384265175|ref|YP_005420882.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898172|ref|YP_006328468.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
gi|380498528|emb|CCG49566.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172282|gb|AFJ61743.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
Length = 249
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 QFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E +QF KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVM-DFKSQLQEFVQR---- 186
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G+ + YK++ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 -DGKGSLE-YKILNEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYY 203
+ +A+ FEA +GAL+LD G++ Q ++ K N+ F M +
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDF 176
>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|384159423|ref|YP_005541496.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
gi|384164142|ref|YP_005545521.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
gi|384168470|ref|YP_005549848.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
gi|341827749|gb|AEK89000.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
Length = 249
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 23/238 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 QFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E +QF KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVM-DFKSQLQEFVQR---- 186
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
G+ + YK++ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 -DGKGSLE-YKILNEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYY 203
+ +A+ FEA +GAL+LD G++ Q ++ K N+ F M +
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDF 176
>gi|306825115|ref|ZP_07458457.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|417794226|ref|ZP_12441485.1| ribonuclease III [Streptococcus oralis SK255]
gi|421489105|ref|ZP_15936493.1| ribonuclease III [Streptococcus oralis SK304]
gi|304432551|gb|EFM35525.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|334270464|gb|EGL88868.1| ribonuclease III [Streptococcus oralis SK255]
gi|400368322|gb|EJP21337.1| ribonuclease III [Streptococcus oralis SK304]
Length = 232
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLGSC 231
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1]
gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1]
Length = 245
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 16/233 (6%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYN 286
++LE S + FN+ LL + S Y+N +N+RLEFLGD+VL LI +D+LY
Sbjct: 20 EFLENLS-IDFNNFDLLNTALSHSS--YSNELDQKSDNNERLEFLGDSVLNLIITDHLYK 76
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
+P EG LS RS +V+ + S + +I + + + + +++ AD +EA
Sbjct: 77 TYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEA 136
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D G +F F ++ ++ D KS LQ+ + P
Sbjct: 137 FVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKIS------P 190
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
YK+ + +GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 191 NYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 243
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+ +A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
K +A+ EA +GA++LD G +A +
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSIATE 152
>gi|410667365|ref|YP_006919736.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
gi|409105112|gb|AFV11237.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
Length = 235
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 12/227 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS-NQRLEFLGDTVLQLITSDYLYNH 287
L L+ V F+ RLL T S + + NQRLEFLGD +L + + YLY H
Sbjct: 5 LDELQKKINVFFSEPRLLETALTHPSYMVEHAEVEHHNQRLEFLGDAILGSVVAYYLYEH 64
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
FP+ EGHL+ R+++V + + V + + + + + + + R AD EA
Sbjct: 65 FPKFGEGHLTKTRAAVVCEPSLAAVARKLELGKYLRLGKGEENSGGRKRPSILADAFEAL 124
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
A+++D+G EA F ++ + + D K+ LQ+ + G E P
Sbjct: 125 TAAVFLDQGWEATCDFLAGLLKEEIEKNV-HGVTRDYKTHLQELVQS----KGNES--PY 177
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y+++E GP + + +T V+ K++ L K TG S +++E NAA+ AL+
Sbjct: 178 YQILEESGPDHDKKFTSGVFLKDKLLGKGTGKSKKESEQNAARAALE 224
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
+ + +L+ FP EG L RAA+V LA +A+++ L ++ G + +
Sbjct: 56 VVAYYLYEHFPKFGEGHLTKTRAAVVCEPSLAAVARKLELGKYLRLGKGEENSGGRKRPS 115
Query: 160 AMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+A+ FEAL A+FLD G + + +L ++ E
Sbjct: 116 ILADAFEALTAAVFLDQGWEATCDFLAGLLKEEIE 150
>gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
Length = 1385
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 45/268 (16%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + +++I+LF +P + EG L+ R+ +N HL ++KR+GLE+ + +
Sbjct: 1101 GDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILRFTT----- 1155
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E E + A+ EAL+GA+++D G A ++ ++ + + + + + L QE
Sbjct: 1156 -EEEFRKPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFEETLAHQE 1214
Query: 213 P----DGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRL 268
DG + S LL++ YS F + S Y QRL
Sbjct: 1215 IRAFLDGIGVHISHSSLLEEALCFPYS--------------FHSASKSY--------QRL 1252
Query: 269 EFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK 328
E++GD VL SD+LY FP EG L+ RS LV N S + + +P P
Sbjct: 1253 EYVGDAVLDFFVSDFLYATFPLAQEGQLTDYRSRLVRNSNLSSISRKLCLP-------PT 1305
Query: 329 VD------LKMKDRADLLEAFLGAMYID 350
V L +K D LE+F+G ++D
Sbjct: 1306 VSKGIRDTLPIKKLGDYLESFIGCCFVD 1333
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 22/154 (14%)
Query: 244 RLLARVFT---TRSMGYTNLT-----------LGSNQRLEFLGDTVLQLITSDYLYNHFP 289
++L VFT T+++ LT LG NQRLEFLGD+VL+L+++ YL+ +P
Sbjct: 1059 KILREVFTHPSTKTIPKRTLTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFFKYP 1118
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM-KDRADLLEAFLGAMY 348
+ EG LS RS N V +G+ I+ + + K +AD++EA +GA+Y
Sbjct: 1119 KMSEGFLSQTRSDFTKNDHLLDVSKRLGL---EEILRFTTEEEFRKPQADVIEALIGAVY 1175
Query: 349 IDKGMEACEQFCKVCFF---PRLQYFILNQEWND 379
ID+G + VC+ P +Y I N ++ +
Sbjct: 1176 IDRGFFEAYKLT-VCWIFDEPDAEYPIYNTKFEE 1208
>gi|417848443|ref|ZP_12494388.1| ribonuclease III [Streptococcus mitis SK1073]
gi|339452657|gb|EGP65280.1| ribonuclease III [Streptococcus mitis SK1073]
Length = 232
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVVKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFNVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGG-IDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVVKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110]
gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110]
Length = 269
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 257 YTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDI 316
Y+ SN+RLEFLGD VL L+ ++ LY FP++ EG L+ LRS LVN RT + I
Sbjct: 72 YSKKKFVSNERLEFLGDAVLDLVVAECLYTRFPDYDEGKLTKLRSQLVNARTLASFARKI 131
Query: 317 GMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFI 372
+ + + ++D AD EA +GA+Y+D ++F + + +
Sbjct: 132 HLGSLLIVSEAAEAIGVRDSETTLADAFEALVGAIYLDSDYLQTKRFLEKKILEGIDFRE 191
Query: 373 LNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKA 432
L+ N+ KS L L +IP Y VI+ GP++ + +TVAVY +E L K
Sbjct: 192 LSSTDNNFKSVL------LEYAQAHHLEIPTYTVIDEEGPSHKKVFTVAVYIGDEMLGKG 245
Query: 433 TGNS 436
G S
Sbjct: 246 VGRS 249
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+ FPD +EG L R+ +V + LA A++I L ++ + ++ + + +A+
Sbjct: 99 LYTRFPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSEAAEAIGVRDSETTLADA 158
Query: 165 FEALMGALFLDG 176
FEAL+GA++LD
Sbjct: 159 FEALVGAIYLDS 170
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 15/227 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
+ +LE + GV + LL R T RS Y N L +N+RLEFLGD+VL ++ + L+++
Sbjct: 11 IGHLEAAFGVSMDP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNH 69
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII---NPKVDLKMKDR----ADLLE 341
P+ EG L+ LR+S+VN R + V +G + + +D+ AD LE
Sbjct: 70 PDLPEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTLE 129
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A LGA+Y+ G++ + F P + D K+ LQ+ L +
Sbjct: 130 ALLGAIYLQYGLDTAAEVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGL------GV 183
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
P Y+ IE GP + +++T V R A G S ++AE AA+ A
Sbjct: 184 PEYR-IEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAESA 229
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGS 149
G++ + + LFH PD+ EG LA RA++V + LA +A+ + GL ++L G
Sbjct: 53 GDSVLGVVITTALFHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGE 112
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ + +A+ EAL+GA++L G+D A +V
Sbjct: 113 ETTGGRDKASILADTLEALLGAIYLQYGLDTAAEVI 148
>gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
Length = 223
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 26/209 (12%)
Query: 241 NHIRLLARVFTTRSM-GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
NH++L T +S G N N+RLEFLGD V+ LI ++YLY F EG LS L
Sbjct: 16 NHLKL---ALTHKSFKGAQN-----NERLEFLGDAVMDLIVAEYLYEKFRHTQEGDLSKL 67
Query: 300 RSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEA 355
R++LVN ++ + IG F ++ + KD +D EA GA+Y++ G+E
Sbjct: 68 RAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAIYLESGLEV 127
Query: 356 CEQFC-KVC--FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
C+ K+ FP++ + + D K++LQ+ L P YK++ GP
Sbjct: 128 CKSLSIKILEEIFPQIDKSL----YKDFKTELQEITQANFAL------TPTYKLLSATGP 177
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAE 441
+ + + +AV+F ++++A A G S ++AE
Sbjct: 178 DHKKEFEMAVFFDDKKIAAAKGKSKKEAE 206
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + +L+ F +EG L+ RAA+V + A A+++ + + + + G +
Sbjct: 40 GDAVMDLIVAEYLYEKFRHTQEGDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHN 99
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA--------DQVFSSV---LYKD 192
+ +++ FEA+ GA++L+ G++V +++F + LYKD
Sbjct: 100 GGRKKDSILSDAFEAIFGAIYLESGLEVCKSLSIKILEEIFPQIDKSLYKD 150
>gi|410679488|ref|YP_006931890.1| ribonuclease III [Borrelia afzelii HLJ01]
gi|408536876|gb|AFU75007.1| ribonuclease III [Borrelia afzelii HLJ01]
Length = 245
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 16/233 (6%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYN 286
++LE S + FN+ LL + S Y+N +N+RLEFLGD+VL LI +D+LY
Sbjct: 20 EFLENLS-IDFNNFDLLNTALSHSS--YSNELDQKSDNNERLEFLGDSVLNLIITDHLYK 76
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
+P EG LS RS +V+ + S + +I + + + + +++ AD +EA
Sbjct: 77 TYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEA 136
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D G +F F ++ ++ D KS LQ+ + P
Sbjct: 137 FVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKIS------P 190
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
YK+ + +GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 191 NYKLEKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 243
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 18/143 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+ +A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKD-----NEV 195
K +A+ EA +GA++LD G +A + +F+ +KD E
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEY 181
Query: 196 RFKQWMYYPQHPLQEQ-EPDGDR 217
K++ P + L+++ PD D+
Sbjct: 182 VQKKYKISPNYKLEKEIGPDHDK 204
>gi|333395987|ref|ZP_08477804.1| ribonuclease III [Lactobacillus coryniformis subsp. coryniformis
KCTC 3167]
gi|336391225|ref|ZP_08572624.1| ribonuclease III [Lactobacillus coryniformis subsp. torquens KCTC
3535]
gi|420145061|ref|ZP_14652537.1| Ribonuclease 3 (Ribonuclease III) [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403296|gb|EJN56551.1| Ribonuclease 3 (Ribonuclease III) [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 230
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 13/221 (5%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G+ + ++ LL+ FT S + NL L QR+EFLGD V++L S+YLY +P + EG
Sbjct: 14 GIEYQNVDLLSEAFTQSSYVNEHPNLKLQDYQRIEFLGDAVMELTVSEYLYAKYPNYPEG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ LR+++V + S + + + + +DR D+ E+F+G++Y+D
Sbjct: 74 KLTRLRAAIVCEDSFSAFARECHFDRYIKLGKGEEKNGARDRNSLLCDIFESFVGSLYLD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G EA ++F FP+++ + D K+ LQ+ GE +I Y ++
Sbjct: 134 QGKEAVQRFVAQVVFPKVEQGAFSYVM-DHKTNLQEFLQK-----DGEVEIS-YPLVAEA 186
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP N +TV V + E L + TG++ + AE AA+VAL+K
Sbjct: 187 GPANDAQFTVQVVARGEVLGQGTGHTKKAAEQAAAEVALRK 227
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P+ EG L RAAIV + A+ + ++ G +
Sbjct: 51 GDAVMELTVSEYLYAKYPNYPEGKLTRLRAAIVCEDSFSAFARECHFDRYIKLGKGEEKN 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +G+L+LD G + + + V++
Sbjct: 111 GARDRNSLLCDIFESFVGSLYLDQGKEAVQRFVAQVVF 148
>gi|293365563|ref|ZP_06612272.1| ribonuclease III [Streptococcus oralis ATCC 35037]
gi|315613276|ref|ZP_07888185.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
gi|406576568|ref|ZP_11052196.1| ribonuclease III [Streptococcus sp. GMD6S]
gi|291315931|gb|EFE56375.1| ribonuclease III [Streptococcus oralis ATCC 35037]
gi|315314511|gb|EFU62554.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
gi|404461316|gb|EKA07289.1| ribonuclease III [Streptococcus sp. GMD6S]
Length = 232
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|383762960|ref|YP_005441942.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381383228|dbj|BAM00045.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 254
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 18/233 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS------NQRLEFLGDTVLQLITSD 282
L LE + G+ F++ +LL + F RS Y N G N+RLEFLGD VL I S+
Sbjct: 6 LSTLEQALGITFHNKQLLQQAFVHRS--YLNELSGDKGQLLDNERLEFLGDAVLSYIFSE 63
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL-- 340
+LY P+ EG L+ LRS+LV T + + + + + + + + + + R L
Sbjct: 64 FLYLRHPDAREGRLTNLRSALVRRETLAHLARQLHLGDYLLLGHGEEESGGRHRPATLCA 123
Query: 341 --EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
EA +GA+Y+D+G++ C + F L+ QE DPKS+LQ+ T
Sbjct: 124 TFEALIGAVYLDQGVDVCREVVVRLFAAELEKLEQIQESRDPKSRLQE--FAQETFG--- 178
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P YK I+ GP + + + + V G S Q+A AA +AL +
Sbjct: 179 -HTPRYKEIDSGGPDHDKYFVMVVQINGRPYGIGEGRSKQEASQQAAAMALYR 230
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +I S L+ PD EG L R+A+V+ + LAHLA+++ L D++L HG +
Sbjct: 53 GDAVLSYIFSEFLYLRHPDAREGRLTNLRSALVRRETLAHLARQLHLGDYLLLGHGEEES 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLYKDNEVRFKQWMYYPQHPL 208
+ FEAL+GA++LD G+DV +V F++ L K ++ Q P+ L
Sbjct: 113 GGRHRPATLCATFEALIGAVYLDQGVDVCREVVVRLFAAELEKLEQI---QESRDPKSRL 169
Query: 209 QE 210
QE
Sbjct: 170 QE 171
>gi|419782205|ref|ZP_14308014.1| ribonuclease III [Streptococcus oralis SK610]
gi|383183309|gb|EIC75846.1| ribonuclease III [Streptococcus oralis SK610]
Length = 232
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|225860919|ref|YP_002742428.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
gi|298229966|ref|ZP_06963647.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254343|ref|ZP_06977929.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298502755|ref|YP_003724695.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
gi|387788118|ref|YP_006253186.1| ribonuclease III [Streptococcus pneumoniae ST556]
gi|417312775|ref|ZP_12099487.1| ribonuclease III [Streptococcus pneumoniae GA04375]
gi|418083148|ref|ZP_12720347.1| ribonuclease III [Streptococcus pneumoniae GA44288]
gi|418085289|ref|ZP_12722471.1| ribonuclease III [Streptococcus pneumoniae GA47281]
gi|418100278|ref|ZP_12737366.1| ribonuclease III [Streptococcus pneumoniae 7286-06]
gi|418119953|ref|ZP_12756904.1| ribonuclease III [Streptococcus pneumoniae GA18523]
gi|418150704|ref|ZP_12787452.1| ribonuclease III [Streptococcus pneumoniae GA14798]
gi|418171175|ref|ZP_12807802.1| ribonuclease III [Streptococcus pneumoniae GA19451]
gi|418195455|ref|ZP_12831935.1| ribonuclease III [Streptococcus pneumoniae GA47688]
gi|418198049|ref|ZP_12834510.1| ribonuclease III [Streptococcus pneumoniae GA47778]
gi|418223282|ref|ZP_12849923.1| ribonuclease III [Streptococcus pneumoniae 5185-06]
gi|418227807|ref|ZP_12854425.1| ribonuclease III [Streptococcus pneumoniae 3063-00]
gi|419425244|ref|ZP_13965441.1| ribonuclease III [Streptococcus pneumoniae 7533-05]
gi|419427195|ref|ZP_13967378.1| ribonuclease III [Streptococcus pneumoniae 5652-06]
gi|419429372|ref|ZP_13969539.1| ribonuclease III [Streptococcus pneumoniae GA11856]
gi|419436089|ref|ZP_13976179.1| ribonuclease III [Streptococcus pneumoniae 8190-05]
gi|419438322|ref|ZP_13978392.1| ribonuclease III [Streptococcus pneumoniae GA13499]
gi|419444572|ref|ZP_13984587.1| ribonuclease III [Streptococcus pneumoniae GA19923]
gi|419446704|ref|ZP_13986709.1| ribonuclease III [Streptococcus pneumoniae 7879-04]
gi|419448854|ref|ZP_13988851.1| ribonuclease III [Streptococcus pneumoniae 4075-00]
gi|419451557|ref|ZP_13991543.1| ribonuclease III [Streptococcus pneumoniae EU-NP02]
gi|419501952|ref|ZP_14041636.1| ribonuclease III [Streptococcus pneumoniae GA47628]
gi|419528630|ref|ZP_14068172.1| ribonuclease III [Streptococcus pneumoniae GA17719]
gi|421236367|ref|ZP_15692965.1| ribonuclease III [Streptococcus pneumoniae 2071004]
gi|421287445|ref|ZP_15738211.1| ribonuclease III [Streptococcus pneumoniae GA58771]
gi|254807906|sp|C1CR56.1|RNC_STRZT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|225726586|gb|ACO22437.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
gi|298238350|gb|ADI69481.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
gi|327389483|gb|EGE87828.1| ribonuclease III [Streptococcus pneumoniae GA04375]
gi|353755224|gb|EHD35829.1| ribonuclease III [Streptococcus pneumoniae GA44288]
gi|353757244|gb|EHD37838.1| ribonuclease III [Streptococcus pneumoniae GA47281]
gi|353772987|gb|EHD53486.1| ribonuclease III [Streptococcus pneumoniae 7286-06]
gi|353789066|gb|EHD69462.1| ribonuclease III [Streptococcus pneumoniae GA18523]
gi|353815130|gb|EHD95351.1| ribonuclease III [Streptococcus pneumoniae GA14798]
gi|353837345|gb|EHE17431.1| ribonuclease III [Streptococcus pneumoniae GA19451]
gi|353861982|gb|EHE41915.1| ribonuclease III [Streptococcus pneumoniae GA47688]
gi|353863431|gb|EHE43359.1| ribonuclease III [Streptococcus pneumoniae GA47778]
gi|353879408|gb|EHE59234.1| ribonuclease III [Streptococcus pneumoniae 5185-06]
gi|353882035|gb|EHE61847.1| ribonuclease III [Streptococcus pneumoniae 3063-00]
gi|379137860|gb|AFC94651.1| ribonuclease III [Streptococcus pneumoniae ST556]
gi|379538327|gb|EHZ03508.1| ribonuclease III [Streptococcus pneumoniae GA13499]
gi|379551320|gb|EHZ16415.1| ribonuclease III [Streptococcus pneumoniae GA11856]
gi|379564653|gb|EHZ29649.1| ribonuclease III [Streptococcus pneumoniae GA17719]
gi|379572265|gb|EHZ37222.1| ribonuclease III [Streptococcus pneumoniae GA19923]
gi|379600165|gb|EHZ64946.1| ribonuclease III [Streptococcus pneumoniae GA47628]
gi|379614244|gb|EHZ78954.1| ribonuclease III [Streptococcus pneumoniae 7879-04]
gi|379615109|gb|EHZ79818.1| ribonuclease III [Streptococcus pneumoniae 8190-05]
gi|379618648|gb|EHZ83323.1| ribonuclease III [Streptococcus pneumoniae 5652-06]
gi|379619681|gb|EHZ84351.1| ribonuclease III [Streptococcus pneumoniae 7533-05]
gi|379623262|gb|EHZ87896.1| ribonuclease III [Streptococcus pneumoniae EU-NP02]
gi|379623912|gb|EHZ88545.1| ribonuclease III [Streptococcus pneumoniae 4075-00]
gi|395602212|gb|EJG62355.1| ribonuclease III [Streptococcus pneumoniae 2071004]
gi|395889854|gb|EJH00861.1| ribonuclease III [Streptococcus pneumoniae GA58771]
Length = 232
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
gi|189043318|sp|A4IM67.1|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
Length = 246
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 21/241 (8%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTL----GSNQRLEFLGDTVLQLITSDY 283
+ Q L+ G+ F + +LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 17 KFQELQKKIGITFQNEKLLIQAFTHSS--YVNEHRRRFHEDNERLEFLGDAVLELTVSQY 74
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
L+ FP EG L+ LR+++V + N + F ++ K + R A
Sbjct: 75 LFQKFPHMSEGQLTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEELTGGRTRPALLA 132
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ EAF+GA+Y+D+GM+ +F FP++ + D KS+LQ+ DG
Sbjct: 133 DVFEAFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVM-DFKSQLQELV----QRDG- 186
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
Y ++E GP +++ + V + L G S ++AE +AA++AL+ +
Sbjct: 187 -SGTLEYAILEEKGPAHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALETLRAADK 245
Query: 458 Q 458
Q
Sbjct: 246 Q 246
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFQKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+DV + ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQ-LQE 180
>gi|407977619|ref|ZP_11158456.1| ribonuclease III [Bacillus sp. HYC-10]
gi|407415872|gb|EKF37453.1| ribonuclease III [Bacillus sp. HYC-10]
Length = 247
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 21/246 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGD 273
D+Q +QS L+Q + + V F + +LL + FT S + N+RLEFLGD
Sbjct: 7 DKQ--KQSKKLEQFREFQQRISVHFKNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGD 64
Query: 274 TVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM 333
VL+L S +L+ +P EG L+ LR+++V + + +++ F +++ +M
Sbjct: 65 AVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEM 121
Query: 334 ---KDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+ R AD+ EAF+GA+Y+D+G+E EQF + +P++ + D KS+LQ+
Sbjct: 122 TGGRKRPALLADVFEAFIGALYLDQGLEPVEQFLEAYVYPKINDGAFSHVM-DFKSQLQE 180
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
DG + Y+++ GP ++R + V + E L G S ++AE +AA+
Sbjct: 181 FV----QRDG--KGVLEYRILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQ 234
Query: 447 VALQKC 452
AL K
Sbjct: 235 EALAKL 240
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 63 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 201
+ +A+ FEA +GAL+LD G++ +Q + +Y K N+ F M
Sbjct: 123 GGRKRPALLADVFEAFIGALYLDQGLEPVEQFLEAYVYPKINDGAFSHVM 172
>gi|15903170|ref|NP_358720.1| ribonuclease III [Streptococcus pneumoniae R6]
gi|116517072|ref|YP_816576.1| ribonuclease III [Streptococcus pneumoniae D39]
gi|148989271|ref|ZP_01820651.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
gi|148998680|ref|ZP_01826119.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
gi|168575703|ref|ZP_02721618.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
gi|194398097|ref|YP_002037848.1| ribonuclease III [Streptococcus pneumoniae G54]
gi|307067896|ref|YP_003876862.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
gi|418076390|ref|ZP_12713626.1| ribonuclease III [Streptococcus pneumoniae GA47502]
gi|418121287|ref|ZP_12758231.1| ribonuclease III [Streptococcus pneumoniae GA44194]
gi|419491133|ref|ZP_14030872.1| ribonuclease III [Streptococcus pneumoniae GA47179]
gi|419504025|ref|ZP_14043694.1| ribonuclease III [Streptococcus pneumoniae GA47760]
gi|419532439|ref|ZP_14071955.1| ribonuclease III [Streptococcus pneumoniae GA47794]
gi|421211313|ref|ZP_15668296.1| ribonuclease III [Streptococcus pneumoniae 2070035]
gi|421231988|ref|ZP_15688631.1| ribonuclease III [Streptococcus pneumoniae 2080076]
gi|421238858|ref|ZP_15695424.1| ribonuclease III [Streptococcus pneumoniae 2071247]
gi|421245135|ref|ZP_15701634.1| ribonuclease III [Streptococcus pneumoniae 2081685]
gi|421266264|ref|ZP_15717145.1| ribonuclease III [Streptococcus pneumoniae SPAR27]
gi|421274965|ref|ZP_15725795.1| ribonuclease III [Streptococcus pneumoniae GA52612]
gi|421313783|ref|ZP_15764373.1| ribonuclease III [Streptococcus pneumoniae GA47562]
gi|73917586|sp|Q8DPJ8.1|RNC_STRR6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|122278538|sp|Q04K72.1|RNC_STRP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226741378|sp|B5E4Y2.1|RNC_STRP4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|15458754|gb|AAK99930.1| Ribonuclease III [Streptococcus pneumoniae R6]
gi|116077648|gb|ABJ55368.1| ribonuclease III [Streptococcus pneumoniae D39]
gi|147755517|gb|EDK62565.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
gi|147925249|gb|EDK76328.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
gi|183578209|gb|EDT98737.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
gi|194357764|gb|ACF56212.1| ribonuclease III [Streptococcus pneumoniae G54]
gi|306409433|gb|ADM84860.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
gi|353749091|gb|EHD29741.1| ribonuclease III [Streptococcus pneumoniae GA47502]
gi|353793189|gb|EHD73558.1| ribonuclease III [Streptococcus pneumoniae GA44194]
gi|379593269|gb|EHZ58082.1| ribonuclease III [Streptococcus pneumoniae GA47179]
gi|379606223|gb|EHZ70972.1| ribonuclease III [Streptococcus pneumoniae GA47794]
gi|379606702|gb|EHZ71449.1| ribonuclease III [Streptococcus pneumoniae GA47760]
gi|395573271|gb|EJG33862.1| ribonuclease III [Streptococcus pneumoniae 2070035]
gi|395595617|gb|EJG55847.1| ribonuclease III [Streptococcus pneumoniae 2080076]
gi|395601295|gb|EJG61443.1| ribonuclease III [Streptococcus pneumoniae 2071247]
gi|395608571|gb|EJG68664.1| ribonuclease III [Streptococcus pneumoniae 2081685]
gi|395867480|gb|EJG78603.1| ribonuclease III [Streptococcus pneumoniae SPAR27]
gi|395874076|gb|EJG85164.1| ribonuclease III [Streptococcus pneumoniae GA52612]
gi|395914283|gb|EJH25127.1| ribonuclease III [Streptococcus pneumoniae GA47562]
Length = 232
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 240 FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
F +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+ EG
Sbjct: 16 FADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGD 73
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDK 351
LS LR+ +V + + D F + + ++R D EAFLGA+ +DK
Sbjct: 74 LSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDK 133
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHV 410
+ ++F P+++ D K+ LQ+ L ++G D+ I Y+VI
Sbjct: 134 DVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG---DVAIRYQVISET 185
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP + + + V V + + + + G S + AE AAK A++K C
Sbjct: 186 GPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 231
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
K ++ L+ G+ F +RLL FT S N TLG+ ++LEFLGD VL+ SDYL
Sbjct: 5 KFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI-INPKVDLKMKDRA---DLL 340
Y HF +EG L+ LRS++V S V D G N+ + + K +A D+
Sbjct: 65 YRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQ--YFILNQEWN-DPKSKLQQ---CCLTLRTL 394
EAF GA+++D+G+EA E+F +P + YF ++++ D + LQQ + R L
Sbjct: 125 EAFNGALFLDQGIEAVEKFSSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVL 184
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ E P + + V V ++LA G + ++AE +AA AL+
Sbjct: 185 N--ESQQPPH-------------FEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F S +L+ F + EG L R+ IV+ + + +A G ++ + G +
Sbjct: 52 GDAVLEFTVSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ K + + FEA GALFLD GI+ ++ S +Y
Sbjct: 112 GGRKRKALLEDVFEAFNGALFLDQGIEAVEKFSSQTVY 149
>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|384443998|ref|YP_005660250.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|81353160|sp|Q5HSF8.1|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
Length = 224
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLERSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + +++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFTKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + Q+ + +L KD + + ++
Sbjct: 103 GGREKPSILSDALEAIIGAIHLEAGFEFTKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|418146451|ref|ZP_12783231.1| ribonuclease III [Streptococcus pneumoniae GA13637]
gi|353813659|gb|EHD93887.1| ribonuclease III [Streptococcus pneumoniae GA13637]
Length = 232
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEMITDYKTH-LQE 167
>gi|331266250|ref|YP_004325880.1| ribonuclease III [Streptococcus oralis Uo5]
gi|326682922|emb|CBZ00539.1| ribonuclease III [Streptococcus oralis Uo5]
Length = 232
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + K G S + AE AAK A++K + C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGRSIGKGQGRSKKLAEQEAAKNAVEKGLNSC 231
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|430848263|ref|ZP_19466089.1| ribonuclease 3 [Enterococcus faecium E1133]
gi|430535606|gb|ELA76006.1| ribonuclease 3 [Enterococcus faecium E1133]
Length = 228
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 15/217 (6%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
L+ + ++F+ + LL + FT S + NL L N+RLEFLGD VL+L+ S YL+ +P
Sbjct: 9 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLG 345
EG L+ R+++V + S + + + + + + R DL EAFLG
Sbjct: 69 HLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLG 128
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-Y 404
A+Y+D+G + F + FP+++ + E D K+KLQ+ D+ I Y
Sbjct: 129 ALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEM-DHKTKLQEVLQK-------SGDVSIEY 180
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
++I GP + R + + VY ++ + G S + AE
Sbjct: 181 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKKLAE 217
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +LF ++P + EG L RAAIV+ L+ AK + ++L G +
Sbjct: 51 GDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD G D V++
Sbjct: 111 GGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 148
>gi|406994955|gb|EKE13831.1| hypothetical protein ACD_12C00799G0004 [uncultured bacterium]
Length = 230
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 17/214 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
LE + + F LL VF RS + SN+RLEFLGD+VL LITS YL+ H+P
Sbjct: 8 LESTIKIKFKDRVLLENVFIHRSYLNEHKKSPFQSNERLEFLGDSVLSLITSVYLFKHYP 67
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAF 343
E EG + ++S++V + + I + + ++ K + K R AD EA
Sbjct: 68 ELKEGDYTEIKSAIVKMDSLAEASKKIELNKY--LLLSKGEEKGAGRTNNNILADCFEAL 125
Query: 344 LGAMYIDKGMEACEQF-CKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+ +++D+ EA +F F +L Y + N + KSKLQ+ + P
Sbjct: 126 IAGIFLDRNFEAAYKFVVDFLFKDKLDYLLKNNLYLSSKSKLQEI------IQRKYKKTP 179
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
IYKVIE GP + R + + VYF N+ L + S
Sbjct: 180 IYKVIEEKGPEHKRIFKIGVYFNNKLLGEGIAPS 213
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 83 IYRMYMYIHK-------------GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQH 129
I+R Y+ HK G++ ITS++LF +P+++EG ++AIV+
Sbjct: 27 IHRSYLNEHKKSPFQSNERLEFLGDSVLSLITSVYLFKHYPELKEGDYTEIKSAIVKMDS 86
Query: 130 LAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
LA +K+I L ++L + G + + +A+CFEAL+ +FLD + A + L
Sbjct: 87 LAEASKKIELNKYLLLSKGEEKGAGRTNNNILADCFEALIAGIFLDRNFEAAYKFVVDFL 146
Query: 190 YKD 192
+KD
Sbjct: 147 FKD 149
>gi|383316368|ref|YP_005377210.1| ribonuclease III [Frateuria aurantia DSM 6220]
gi|379043472|gb|AFC85528.1| ribonuclease III [Frateuria aurantia DSM 6220]
Length = 216
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 107/219 (48%), Gaps = 19/219 (8%)
Query: 239 IFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
+F L T RSMG N N+RLEFLGD +L +I ++ LY P+ EG LS
Sbjct: 6 VFEKPELAQLALTHRSMGRPN-----NERLEFLGDALLGVIVAELLYEAHPKASEGELSR 60
Query: 299 LRSSLVNNRTQSVVCNDI----GMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGME 354
LR+ LVN + +V+ + G+ + + AD EA + A+Y+D G E
Sbjct: 61 LRAQLVNGQALAVLARKLALGDGLRLGPGELKSGGYRRDSILADACEAMIAAIYLDAGFE 120
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
C Q F P Q L + D K++LQ+ L G +P+Y +I+ G +
Sbjct: 121 TCRQVVGRWFAP--QIAALPRSSKDAKTRLQEW------LQGKGLSLPVYTLIDSHGEDH 172
Query: 415 SRSYTVAVYFKNER--LAKATGNSIQQAEMNAAKVALQK 451
+++ V+ + + LA+A G+S + AE NAA+ L +
Sbjct: 173 DKTFDVSCAITDPQPMLAQAQGSSRRSAEQNAAEQILAR 211
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + L+ P EG L+ RA +V Q LA LA+++ L D + G
Sbjct: 34 GDALLGVIVAELLYEAHPKASEGELSRLRAQLVNGQALAVLARKLALGDGLRLGPGELKS 93
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY------KDNEVRFKQWM 201
+A+ EA++ A++LD G + QV F+ + KD + R ++W+
Sbjct: 94 GGYRRDSILADACEAMIAAIYLDAGFETCRQVVGRWFAPQIAALPRSSKDAKTRLQEWL 152
>gi|409358245|ref|ZP_11236608.1| ribonuclease III [Dietzia alimentaria 72]
Length = 232
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 243 IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
I L + T RS Y + L N+RLEFLGD VL+L+ ++YLY+ +P+ EG L+ +R+S
Sbjct: 18 IELATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYSAYPDRPEGDLAKIRAS 77
Query: 303 LVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR-----------ADLLEAFLGAMYIDK 351
LVN + V DI + + + L + AD LEA GA+Y+
Sbjct: 78 LVN----TYVLADIARELGDDGLGAHLRLGRGEELTGGNDKHSILADTLEAVFGAVYLTH 133
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G+E + + RLQ D K+ LQ+ ++ G P Y+ I G
Sbjct: 134 GLETARRVIEAIIGERLQLVPTLGAALDWKTSLQEKAASI-----GRPKAR-YE-ITSTG 186
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
P + ++++ V+ + L + TG + ++AE AA+ A
Sbjct: 187 PDHDKTFSAVVFVGEDSLGQGTGRTKKEAEQKAAEQA 223
>gi|306829619|ref|ZP_07462809.1| ribonuclease III [Streptococcus mitis ATCC 6249]
gi|304428705|gb|EFM31795.1| ribonuclease III [Streptococcus mitis ATCC 6249]
Length = 232
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F +LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKDRFAIEFADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVVRVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKIFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHP 207
+ + FEA +GAL LD + VR K+++Y P
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDV----------------VRVKEFIYQVMIP 148
>gi|406881398|gb|EKD29472.1| hypothetical protein ACD_78C00391G0002 [uncultured bacterium (gcode
4)]
Length = 248
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF-- 321
SN+RLEFLGD VL+LIT++ L++ FP+ E L+ +RS+LV + + + +G+P +
Sbjct: 53 SNERLEFLGDAVLELITTELLFHAFPDKPEWELTDIRSALVRGKNLAAIGLTLGLPEYIL 112
Query: 322 --------ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFIL 373
NP + A+ EAFLGA+Y+D G + F + L +
Sbjct: 113 LSKGEELAGGSTNPYI------VANTFEAFLGALYLDLGYAHAKAFVEKYVLTTLPDILS 166
Query: 374 NQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT 433
Q DPKS LQ+ + P Y+VI G +S+SYTV+ ++ T
Sbjct: 167 LQLHVDPKSHLQEISQARYS------TTPTYEVIRESGSDHSKSYTVSAAIGLVQVGTGT 220
Query: 434 GNSIQQAEMNAAKVALQK 451
G S ++A+ AA+ AL +
Sbjct: 221 GTSKKKAQQEAAENALSR 238
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + IT+ LFH FPD E L R+A+V+ ++LA + +GL +++L + G +L
Sbjct: 61 GDAVLELITTELLFHAFPDKPEWELTDIRSALVRGKNLAAIGLTLGLPEYILLSKGEELA 120
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ +AN FEA +GAL+LD G
Sbjct: 121 GGSTNPYIVANTFEAFLGALYLDLG 145
>gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
Length = 224
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 24/228 (10%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
QYL Y F++ LL T +S + N+RLEFLGD VL LI ++LY FP
Sbjct: 8 QYLGYH----FSNQNLLQEALTHKSAKKST----HNERLEFLGDAVLDLIIGEFLYKKFP 59
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLG 345
EG LS +R+S+VN + + + +IG + + + + + KD ++ EA +G
Sbjct: 60 HSPEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIVG 119
Query: 346 AMYIDKGMEACEQFC-KV--CFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
A+Y++ G+E + K+ +P++ L + D K+ LQ+ L + P
Sbjct: 120 AIYLESGLEKVQTIVLKILDILYPKID---LENLFYDYKTSLQELTQALFGI------TP 170
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y V++ GP +++ + + V+ +N+ A+A G S ++A+ N AK+AL+
Sbjct: 171 EYVVLDSKGPDHNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALK 218
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I L+ FP EG L+ RA++V + A +A+ + + +++ +H +
Sbjct: 42 GDAVLDLIIGEFLYKKFPHSPEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQN 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ E ++N FEA++GA++L+ G++ + +L
Sbjct: 102 NGREKDSILSNAFEAIVGAIYLESGLEKVQTIVLKIL 138
>gi|419766139|ref|ZP_14292354.1| ribonuclease III [Streptococcus mitis SK579]
gi|383354415|gb|EID31980.1| ribonuclease III [Streptococcus mitis SK579]
Length = 232
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGKGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653]
gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653]
Length = 312
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 11/196 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 49 LLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVV 108
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 109 NSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDRGLDAAAELV 168
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 169 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVSE-TGPDHEKTFTA 221
Query: 421 AVYFKNERLAKATGNS 436
A TG S
Sbjct: 222 AARVGGVAYGTGTGRS 237
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ + PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 76 GDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGT 135
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 136 GGRDKASILADTLEAVIGAVYLDRGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 195
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 196 TATEGLGVPEYLVSETGPDHEKTFT 220
>gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
Length = 251
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 14/233 (6%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSD 282
+K LQ YL + F + LLA FT S + + L +R+EFLGD VL+LI S+
Sbjct: 20 IKDLQDYLAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFYERIEFLGDAVLELIVSE 79
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----D 338
Y+Y FPE +G L+ LR+++V + S + + + + + + R D
Sbjct: 80 YIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRPGLLCD 139
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+ E+F+GA+Y+D+G A E+F + FP+L + D K+ LQ+ G+
Sbjct: 140 IFESFIGALYLDQGRPAVEKFVRRVIFPKLDLGWFDHAV-DAKTSLQEFLQR-----DGD 193
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
DI Y +++ G N + V V + + + TG+S + AEM AA AL K
Sbjct: 194 VDIE-YHLLQESGTENDPEFKVNVSADGKVIGEGTGSSKKHAEMKAASQALNK 245
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +++ FP++ +G L RAA+V + AK + ++ HG ++
Sbjct: 69 GDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMA 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G ++ V++
Sbjct: 129 GARQRPGLLCDIFESFIGALYLDQGRPAVEKFVRRVIF 166
>gi|307708796|ref|ZP_07645258.1| ribonuclease III [Streptococcus mitis NCTC 12261]
gi|307615162|gb|EFN94373.1| ribonuclease III [Streptococcus mitis NCTC 12261]
Length = 232
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|421298687|ref|ZP_15749375.1| ribonuclease III [Streptococcus pneumoniae GA60080]
gi|395902643|gb|EJH13576.1| ribonuclease III [Streptococcus pneumoniae GA60080]
Length = 232
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRETIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRETILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|418976305|ref|ZP_13524186.1| ribonuclease III [Streptococcus mitis SK575]
gi|383351694|gb|EID29470.1| ribonuclease III [Streptococcus mitis SK575]
Length = 232
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYKVMIPKVETGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYKVMIPKVETGEFEMITDYKTH-LQE 167
>gi|372324770|ref|ZP_09519359.1| Ribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366983578|gb|EHN58977.1| Ribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 231
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 12/218 (5%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSN--QRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G+ F+ +LL FT + + G QRLEFLGD+V+QLI +DYL+ +P+ EG
Sbjct: 13 GIEFSDQKLLLEAFTQGNYLNEHPEEGGRDYQRLEFLGDSVMQLIVADYLFTRYPDWEEG 72
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMYID 350
L+ +R ++V +++ S + + + ++R LL EAF+GA+Y D
Sbjct: 73 QLTEMRIAMVQSKSFSHFARLAHFDRYIRLGKGEELSGARNRDGLLEDIWEAFVGALYKD 132
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G +A F FFP + +E+ D KSKLQ+ G DI V E +
Sbjct: 133 QGAKAVFDFLNQIFFPAVDAGFF-EEFIDYKSKLQELLQR-----DGSVDIEYKVVKEDL 186
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ VAV+ + L +G SI+ AE AAKVA
Sbjct: 187 SDAQKPHFEVAVFVDGQPLGSGSGRSIKIAEKKAAKVA 224
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +PD EEG L R A+VQ++ +H A+ + ++ G +L
Sbjct: 50 GDSVMQLIVADYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAHFDRYIRLGKGEELS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGG----IDVADQVF 185
+ + +EA +GAL+ D G D +Q+F
Sbjct: 110 GARNRDGLLEDIWEAFVGALYKDQGAKAVFDFLNQIF 146
>gi|417941213|ref|ZP_12584500.1| ribonuclease III [Streptococcus oralis SK313]
gi|343388506|gb|EGV01092.1| ribonuclease III [Streptococcus oralis SK313]
Length = 232
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKKRFAIEFVDKHLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYTKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEM-IKDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + + K G S + AE AAK A++K C
Sbjct: 173 GDVDIR-YQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYTKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTH-LQE 167
>gi|169833544|ref|YP_001694678.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
gi|221231942|ref|YP_002511094.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
gi|307706718|ref|ZP_07643523.1| ribonuclease III [Streptococcus mitis SK321]
gi|307709493|ref|ZP_07645950.1| ribonuclease III [Streptococcus mitis SK564]
gi|387626545|ref|YP_006062720.1| ribonuclease III [Streptococcus pneumoniae INV104]
gi|387757579|ref|YP_006064558.1| ribonuclease III [Streptococcus pneumoniae OXC141]
gi|415698831|ref|ZP_11457330.1| ribonuclease III [Streptococcus pneumoniae 459-5]
gi|415749607|ref|ZP_11477551.1| ribonuclease III [Streptococcus pneumoniae SV35]
gi|415752293|ref|ZP_11479404.1| ribonuclease III [Streptococcus pneumoniae SV36]
gi|417694159|ref|ZP_12343347.1| ribonuclease III [Streptococcus pneumoniae GA47901]
gi|417849433|ref|ZP_12495354.1| ribonuclease III [Streptococcus mitis SK1080]
gi|417924294|ref|ZP_12567740.1| ribonuclease III [Streptococcus mitis SK569]
gi|418123498|ref|ZP_12760431.1| ribonuclease III [Streptococcus pneumoniae GA44378]
gi|418128087|ref|ZP_12764982.1| ribonuclease III [Streptococcus pneumoniae NP170]
gi|418137270|ref|ZP_12774110.1| ribonuclease III [Streptococcus pneumoniae GA11663]
gi|418166884|ref|ZP_12803540.1| ribonuclease III [Streptococcus pneumoniae GA17971]
gi|418178262|ref|ZP_12814846.1| ribonuclease III [Streptococcus pneumoniae GA41565]
gi|418232282|ref|ZP_12858869.1| ribonuclease III [Streptococcus pneumoniae GA07228]
gi|418236743|ref|ZP_12863311.1| ribonuclease III [Streptococcus pneumoniae GA19690]
gi|419473287|ref|ZP_14013138.1| ribonuclease III [Streptococcus pneumoniae GA13430]
gi|419480130|ref|ZP_14019936.1| ribonuclease III [Streptococcus pneumoniae GA19101]
gi|419499826|ref|ZP_14039520.1| ribonuclease III [Streptococcus pneumoniae GA47597]
gi|419512596|ref|ZP_14052230.1| ribonuclease III [Streptococcus pneumoniae GA05578]
gi|421206709|ref|ZP_15663764.1| ribonuclease III [Streptococcus pneumoniae 2090008]
gi|421229884|ref|ZP_15686552.1| ribonuclease III [Streptococcus pneumoniae 2061376]
gi|421283397|ref|ZP_15734184.1| ribonuclease III [Streptococcus pneumoniae GA04216]
gi|421292162|ref|ZP_15742897.1| ribonuclease III [Streptococcus pneumoniae GA56348]
gi|421312094|ref|ZP_15762697.1| ribonuclease III [Streptococcus pneumoniae GA58981]
gi|444382056|ref|ZP_21180261.1| ribonuclease III [Streptococcus pneumoniae PCS8106]
gi|444384499|ref|ZP_21182593.1| ribonuclease III [Streptococcus pneumoniae PCS8203]
gi|238688328|sp|B1IC43.1|RNC_STRPI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807902|sp|B8ZJR8.1|RNC_STRPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|168996046|gb|ACA36658.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
gi|220674402|emb|CAR68952.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
gi|301794330|emb|CBW36755.1| ribonuclease III [Streptococcus pneumoniae INV104]
gi|301800168|emb|CBW32773.1| ribonuclease III [Streptococcus pneumoniae OXC141]
gi|307617803|gb|EFN96965.1| ribonuclease III [Streptococcus mitis SK321]
gi|307619807|gb|EFN98926.1| ribonuclease III [Streptococcus mitis SK564]
gi|332203096|gb|EGJ17164.1| ribonuclease III [Streptococcus pneumoniae GA47901]
gi|339456311|gb|EGP68903.1| ribonuclease III [Streptococcus mitis SK1080]
gi|342836081|gb|EGU70304.1| ribonuclease III [Streptococcus mitis SK569]
gi|353796844|gb|EHD77182.1| ribonuclease III [Streptococcus pneumoniae GA44378]
gi|353799518|gb|EHD79836.1| ribonuclease III [Streptococcus pneumoniae NP170]
gi|353830480|gb|EHE10610.1| ribonuclease III [Streptococcus pneumoniae GA17971]
gi|353845036|gb|EHE25079.1| ribonuclease III [Streptococcus pneumoniae GA41565]
gi|353887009|gb|EHE66789.1| ribonuclease III [Streptococcus pneumoniae GA07228]
gi|353892975|gb|EHE72723.1| ribonuclease III [Streptococcus pneumoniae GA19690]
gi|353901261|gb|EHE76805.1| ribonuclease III [Streptococcus pneumoniae GA11663]
gi|379552794|gb|EHZ17883.1| ribonuclease III [Streptococcus pneumoniae GA13430]
gi|379570701|gb|EHZ35662.1| ribonuclease III [Streptococcus pneumoniae GA19101]
gi|379599134|gb|EHZ63917.1| ribonuclease III [Streptococcus pneumoniae GA47597]
gi|379637066|gb|EIA01624.1| ribonuclease III [Streptococcus pneumoniae GA05578]
gi|381309989|gb|EIC50822.1| ribonuclease III [Streptococcus pneumoniae SV36]
gi|381316703|gb|EIC57448.1| ribonuclease III [Streptococcus pneumoniae 459-5]
gi|381317901|gb|EIC58626.1| ribonuclease III [Streptococcus pneumoniae SV35]
gi|395575506|gb|EJG36074.1| ribonuclease III [Streptococcus pneumoniae 2090008]
gi|395595444|gb|EJG55676.1| ribonuclease III [Streptococcus pneumoniae 2061376]
gi|395881360|gb|EJG92409.1| ribonuclease III [Streptococcus pneumoniae GA04216]
gi|395892290|gb|EJH03281.1| ribonuclease III [Streptococcus pneumoniae GA56348]
gi|395910523|gb|EJH21395.1| ribonuclease III [Streptococcus pneumoniae GA58981]
gi|429316205|emb|CCP35874.1| ribonuclease III [Streptococcus pneumoniae SPN034156]
gi|429319547|emb|CCP32827.1| ribonuclease III [Streptococcus pneumoniae SPN034183]
gi|429321364|emb|CCP34801.1| ribonuclease III [Streptococcus pneumoniae SPN994039]
gi|429323184|emb|CCP30842.1| ribonuclease III [Streptococcus pneumoniae SPN994038]
gi|444252259|gb|ELU58723.1| ribonuclease III [Streptococcus pneumoniae PCS8203]
gi|444253655|gb|ELU60110.1| ribonuclease III [Streptococcus pneumoniae PCS8106]
Length = 232
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|332298046|ref|YP_004439968.1| ribonuclease 3 [Treponema brennaborense DSM 12168]
gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
Length = 256
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 17/229 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL---TLGSNQRLEFLGDTVLQLITSDYL 284
QL E + V FN ++LL F RS Y+N T +N+RLEFLGD VL + T+ YL
Sbjct: 28 QLLDFERAISVHFNDLQLLDLAFHHRS--YSNEGANTRYNNERLEFLGDAVLGMATATYL 85
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL-----KMKDRADL 339
Y E EG L+ ++S +V+ T + + +IG+ ++ +L K AD
Sbjct: 86 YESMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCL-VLGKGEELSGGRTKKAILADA 144
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA +GA Y+D G A E+ P +Q + N+ D K+ LQ+
Sbjct: 145 VEAVIGAYYLDSGYSAAEKLVLELIVPEIQKVLQNKHHRDYKTLLQEF------YQKKYK 198
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ P+Y++++ GP + R++ V+V+ + A+G + ++AE +AA++A
Sbjct: 199 ECPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAARLA 247
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ T+ +L+ + EG LA ++ +V LA +A IG++ ++ G +L
Sbjct: 73 GDAVLGMATATYLYESMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCLVLGKGEELS 132
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
K +A+ EA++GA +LD G A+++
Sbjct: 133 GGRTKKAILADAVEAVIGAYYLDSGYSAAEKL 164
>gi|419471171|ref|ZP_14011030.1| ribonuclease III [Streptococcus pneumoniae GA07914]
gi|379545887|gb|EHZ11026.1| ribonuclease III [Streptococcus pneumoniae GA07914]
Length = 232
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 240 FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
F +LL FT S Y N L + N+RLEFLGD VLQL+ S+YLY +P+ EG
Sbjct: 16 FADKKLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGD 73
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDK 351
LS LR+ +V + + D F + + ++R D EAFLGA+ +DK
Sbjct: 74 LSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDK 133
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHV 410
+ ++F P+++ D K+ LQ+ L ++G D+ I Y+VI
Sbjct: 134 DVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG---DVAIRYQVISET 185
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP + + + V V + + + + G S + AE AAK A++K C
Sbjct: 186 GPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122]
gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122]
Length = 312
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 39/289 (13%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+L ++ GV F+ I +L T S S +RLEFLGD++L I ++ ++
Sbjct: 10 KLDLAQHVIGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAFHA 69
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADL-------L 340
+PE EG L+ ++ +LV+ + S V +G FA+II + R L
Sbjct: 70 YPEIDEGGLTRIKVALVSGSSLSDVAAKLG---FADIIVFGSSERGTGRRGLHSALENVY 126
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA + A+++DKGM+ F + PR+ + +E +PKS LQ+ E
Sbjct: 127 EALVAALFLDKGMDGARDFVRRTLIPRMD-IEMAREPENPKSALQEKLQE-------EGI 178
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ-------KCP 453
P YK++E GP + R++ V+ LA+ G + +++E AAK AL + P
Sbjct: 179 TPTYKLVETQGPPHDRTFVSQVFAGLTALAQGIGRTKKESESQAAKAALDMIDADGAQAP 238
Query: 454 SICP----QLDHQKRVIAKSIELQKH----------EGIFGAWASFSCW 488
Q KR AK+ E Q+ E G ASF W
Sbjct: 239 DARAMKELQKAEAKRAQAKAKEEQRRAKEEAKRQRAEARKGKDASFFGW 287
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + FH +P+I+EGGL + A+V L+ +A ++G D +++
Sbjct: 54 GDSILGAIVANEAFHAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
L A+ N +EAL+ ALFLD G+D A L ++ + P+ LQE+
Sbjct: 114 GRRGLHSALENVYEALVAALFLDKGMDGARDFVRRTLIPRMDIEMAREPENPKSALQEK 172
>gi|385816004|ref|YP_005852395.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|418035104|ref|ZP_12673563.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|354691042|gb|EHE90982.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 231
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
K ++ L+ G+ F +RLL FT S N TLG+ ++LEFLGD VL+ SDYL
Sbjct: 5 KFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI-INPKVDLKMKDRA---DLL 340
Y HF +EG L+ LRS++V S V D G N+ + + K +A D+
Sbjct: 65 YRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQ--YFILNQEWN-DPKSKLQQ---CCLTLRTL 394
EAF GA+++D+G+EA E+F +P + YF ++++ D + LQQ + R L
Sbjct: 125 EAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVL 184
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ E P + + V V ++LA G + ++AE +AA AL+
Sbjct: 185 N--ESQQPPH-------------FEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F S +L+ F + EG L R+ IV+ + + +A G ++ + G +
Sbjct: 52 GDAVLEFTVSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ K + + FEA GALFLD GI+ ++ S +Y
Sbjct: 112 GGRKRKALLEDVFEAFNGALFLDQGIEAVEKFLSQTVY 149
>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 224
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE + F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQNLTYEFKDKNLLMHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLE 341
+ F + EG LS LR++LVN ++ + + N ++G F ++ K K +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + +A+A S ++A+ AAK+AL+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKEIARAIAGSKKEAQQMAAKIALEKLGAL 224
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKSSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|168493169|ref|ZP_02717312.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
gi|418074019|ref|ZP_12711275.1| ribonuclease III [Streptococcus pneumoniae GA11184]
gi|418078713|ref|ZP_12715936.1| ribonuclease III [Streptococcus pneumoniae 4027-06]
gi|418080686|ref|ZP_12717898.1| ribonuclease III [Streptococcus pneumoniae 6735-05]
gi|418086947|ref|ZP_12724117.1| ribonuclease III [Streptococcus pneumoniae GA47033]
gi|418089620|ref|ZP_12726776.1| ribonuclease III [Streptococcus pneumoniae GA43265]
gi|418098594|ref|ZP_12735693.1| ribonuclease III [Streptococcus pneumoniae 6901-05]
gi|418105312|ref|ZP_12742370.1| ribonuclease III [Streptococcus pneumoniae GA44500]
gi|418114792|ref|ZP_12751780.1| ribonuclease III [Streptococcus pneumoniae 5787-06]
gi|418116958|ref|ZP_12753928.1| ribonuclease III [Streptococcus pneumoniae 6963-05]
gi|418130403|ref|ZP_12767287.1| ribonuclease III [Streptococcus pneumoniae GA07643]
gi|418135286|ref|ZP_12772142.1| ribonuclease III [Streptococcus pneumoniae GA11426]
gi|418173607|ref|ZP_12810220.1| ribonuclease III [Streptococcus pneumoniae GA41277]
gi|418182861|ref|ZP_12819421.1| ribonuclease III [Streptococcus pneumoniae GA43380]
gi|418187250|ref|ZP_12823777.1| ribonuclease III [Streptococcus pneumoniae GA47360]
gi|418216676|ref|ZP_12843399.1| ribonuclease III [Streptococcus pneumoniae Netherlands15B-37]
gi|418229988|ref|ZP_12856591.1| ribonuclease III [Streptococcus pneumoniae EU-NP01]
gi|419431632|ref|ZP_13971772.1| ribonuclease III [Streptococcus pneumoniae EU-NP05]
gi|419434348|ref|ZP_13974465.1| ribonuclease III [Streptococcus pneumoniae GA40183]
gi|419440451|ref|ZP_13980499.1| ribonuclease III [Streptococcus pneumoniae GA40410]
gi|419455628|ref|ZP_13995586.1| ribonuclease III [Streptococcus pneumoniae EU-NP04]
gi|419464547|ref|ZP_14004439.1| ribonuclease III [Streptococcus pneumoniae GA04175]
gi|419469086|ref|ZP_14008957.1| ribonuclease III [Streptococcus pneumoniae GA06083]
gi|419477902|ref|ZP_14017726.1| ribonuclease III [Streptococcus pneumoniae GA18068]
gi|419497409|ref|ZP_14037118.1| ribonuclease III [Streptococcus pneumoniae GA47522]
gi|419534718|ref|ZP_14074219.1| ribonuclease III [Streptococcus pneumoniae GA17457]
gi|421270670|ref|ZP_15721525.1| ribonuclease III [Streptococcus pneumoniae SPAR48]
gi|421281209|ref|ZP_15732007.1| ribonuclease III [Streptococcus pneumoniae GA04672]
gi|421307562|ref|ZP_15758205.1| ribonuclease III [Streptococcus pneumoniae GA60132]
gi|421309660|ref|ZP_15760287.1| ribonuclease III [Streptococcus pneumoniae GA62681]
gi|183576640|gb|EDT97168.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
gi|353747904|gb|EHD28560.1| ribonuclease III [Streptococcus pneumoniae 4027-06]
gi|353749519|gb|EHD30163.1| ribonuclease III [Streptococcus pneumoniae GA11184]
gi|353753226|gb|EHD33850.1| ribonuclease III [Streptococcus pneumoniae 6735-05]
gi|353759208|gb|EHD39794.1| ribonuclease III [Streptococcus pneumoniae GA47033]
gi|353761618|gb|EHD42184.1| ribonuclease III [Streptococcus pneumoniae GA43265]
gi|353769954|gb|EHD50470.1| ribonuclease III [Streptococcus pneumoniae 6901-05]
gi|353777377|gb|EHD57850.1| ribonuclease III [Streptococcus pneumoniae GA44500]
gi|353786305|gb|EHD66718.1| ribonuclease III [Streptococcus pneumoniae 5787-06]
gi|353789319|gb|EHD69714.1| ribonuclease III [Streptococcus pneumoniae 6963-05]
gi|353803695|gb|EHD83987.1| ribonuclease III [Streptococcus pneumoniae GA07643]
gi|353838424|gb|EHE18502.1| ribonuclease III [Streptococcus pneumoniae GA41277]
gi|353849002|gb|EHE29012.1| ribonuclease III [Streptococcus pneumoniae GA43380]
gi|353851544|gb|EHE31536.1| ribonuclease III [Streptococcus pneumoniae GA47360]
gi|353872268|gb|EHE52134.1| ribonuclease III [Streptococcus pneumoniae Netherlands15B-37]
gi|353887510|gb|EHE67288.1| ribonuclease III [Streptococcus pneumoniae EU-NP01]
gi|353901434|gb|EHE76976.1| ribonuclease III [Streptococcus pneumoniae GA11426]
gi|379537581|gb|EHZ02763.1| ribonuclease III [Streptococcus pneumoniae GA04175]
gi|379547189|gb|EHZ12327.1| ribonuclease III [Streptococcus pneumoniae GA06083]
gi|379564066|gb|EHZ29063.1| ribonuclease III [Streptococcus pneumoniae GA17457]
gi|379565338|gb|EHZ30330.1| ribonuclease III [Streptococcus pneumoniae GA18068]
gi|379575732|gb|EHZ40662.1| ribonuclease III [Streptococcus pneumoniae GA40183]
gi|379578591|gb|EHZ43500.1| ribonuclease III [Streptococcus pneumoniae GA40410]
gi|379600878|gb|EHZ65657.1| ribonuclease III [Streptococcus pneumoniae GA47522]
gi|379628762|gb|EHZ93364.1| ribonuclease III [Streptococcus pneumoniae EU-NP04]
gi|379630199|gb|EHZ94789.1| ribonuclease III [Streptococcus pneumoniae EU-NP05]
gi|395867799|gb|EJG78919.1| ribonuclease III [Streptococcus pneumoniae SPAR48]
gi|395882370|gb|EJG93417.1| ribonuclease III [Streptococcus pneumoniae GA04672]
gi|395907475|gb|EJH18366.1| ribonuclease III [Streptococcus pneumoniae GA60132]
gi|395911081|gb|EJH21950.1| ribonuclease III [Streptococcus pneumoniae GA62681]
Length = 232
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTYLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + FEA +GAL LD DVA
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDK--DVA 136
>gi|405760786|ref|YP_006701382.1| ribonuclease III [Streptococcus pneumoniae SPNA45]
gi|404277675|emb|CCM08218.1| ribonuclease III [Streptococcus pneumoniae SPNA45]
Length = 232
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEMITDYKTH-LQE 167
>gi|342163889|ref|YP_004768528.1| ribonuclease III [Streptococcus pseudopneumoniae IS7493]
gi|341933771|gb|AEL10668.1| ribonuclease III [Streptococcus pseudopneumoniae IS7493]
Length = 232
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVTKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVTKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
Length = 228
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 10/220 (4%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G FN I L T S Y + N+RLE LGD+VL +I +DYL+ +PE EG+L
Sbjct: 12 GYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVTYPELSEGNL 71
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV----DLKMKDRADLLEAFLGAMYIDKG 352
S LRS++V+ + V + + + + + D++ AD +EA +GA+Y+D G
Sbjct: 72 SKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMRPSTLADTVEAIIGAVYLDGG 131
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+A + F P ++ +ND KS+LQ+ R G DI Y++I GP
Sbjct: 132 FDAAKVFVLSLLAPIIEETAAISNFNDYKSELQE-----RLQIDGYSDIK-YEIIREEGP 185
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+ + + V + + + +G S + AE AA+ AL +
Sbjct: 186 DHDKMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQALSEL 225
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + +LF +P++ EG L+ R+ IV + L +A + L ++L + G L
Sbjct: 47 GDSVLNIIITDYLFVTYPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLS 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
H +A+ EA++GA++LDGG D A +VF
Sbjct: 107 HGDMRPSTLADTVEAIIGAVYLDGGFDAA-KVF 138
>gi|417686722|ref|ZP_12335998.1| ribonuclease III [Streptococcus pneumoniae GA41301]
gi|418159970|ref|ZP_12796669.1| ribonuclease III [Streptococcus pneumoniae GA17227]
gi|419521208|ref|ZP_14060803.1| ribonuclease III [Streptococcus pneumoniae GA05245]
gi|332074858|gb|EGI85330.1| ribonuclease III [Streptococcus pneumoniae GA41301]
gi|353821703|gb|EHE01879.1| ribonuclease III [Streptococcus pneumoniae GA17227]
gi|379538508|gb|EHZ03688.1| ribonuclease III [Streptococcus pneumoniae GA05245]
Length = 232
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVVIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 237
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 10/228 (4%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G+ F + +L T S + N+RLEFLGD+VLQL + YL+N++ + EG L
Sbjct: 14 GIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDKSEGEL 73
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +R+ +V + V ++ + + + + ++R AD LEA + A+Y+DKG
Sbjct: 74 TKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAAVYLDKG 133
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+E F F + I + D K++LQ+ GE +I +Y +++H GP
Sbjct: 134 IEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQK-----NGEVNI-VYNLVKHEGP 187
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLD 460
+ R + + NE + + G S +++E NAAK ALQ+ I + D
Sbjct: 188 PHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLGEIKWEKD 235
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF+ + D EG L RA +V L ++K + L ++ + G +L
Sbjct: 49 GDSVLQLCVTKYLFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD 182
E A+ EA++ A++LD GI+VA+
Sbjct: 109 GGRERTSIQADALEAVIAAVYLDKGIEVAN 138
>gi|345009585|ref|YP_004811939.1| ribonuclease 3 [Streptomyces violaceusniger Tu 4113]
gi|344035934|gb|AEM81659.1| Ribonuclease 3 [Streptomyces violaceusniger Tu 4113]
Length = 278
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 11/196 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 38 LLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVV 97
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 98 NSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAAAELV 157
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 158 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVSE-TGPDHEKTFTA 210
Query: 421 AVYFKNERLAKATGNS 436
A TG S
Sbjct: 211 AARVGGVAYGTGTGRS 226
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ + PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 65 GDSVLGLVVTDTLYRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 125 GGRDKASILADTLEAVIGAVYLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 184
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 185 TATEGLGVPEYLVSETGPDHEKTFT 209
>gi|343128004|ref|YP_004777935.1| ribonuclease III [Borrelia bissettii DN127]
gi|342222692|gb|AEL18870.1| ribonuclease III [Borrelia bissettii DN127]
Length = 245
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 10/196 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
+N+RLEFLGD+VL LI +D+LY +P EG LS RS +V+ + S + +I + +
Sbjct: 54 NNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYIL 113
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + +++ AD +EAF+GA+Y+D G +F F ++ ++ D
Sbjct: 114 LGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKD 173
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
KS LQ+ + P YK+ + +GP + + + V +Y ++ G S ++
Sbjct: 174 YKSLLQEYVQKKYKIS------PSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKE 227
Query: 440 AEMNAAKVALQKCPSI 455
AEM AA+VAL+ +I
Sbjct: 228 AEMRAAEVALKAMENI 243
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+++A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKD-----NEV 195
K +A+ EA +GA++LD G A + +F+ +KD E
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEY 181
Query: 196 RFKQWMYYPQHPL-QEQEPDGDR 217
K++ P + L +E PD D+
Sbjct: 182 VQKKYKISPSYKLDKEIGPDHDK 204
>gi|424846628|ref|ZP_18271222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|356485926|gb|EHI15913.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
Length = 224
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ G
Sbjct: 117 AIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+ L+K ++
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLNGKELARAIAGSKKEAQQMAAKITLEKLGAL 224
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 103 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 161
>gi|289168052|ref|YP_003446321.1| ribonuclease III [Streptococcus mitis B6]
gi|288907619|emb|CBJ22456.1| ribonuclease III [Streptococcus mitis B6]
Length = 232
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVTIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 26/245 (10%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRL 268
P+ DR EQ L+ + G+ F++ LL FT S Y N N+RL
Sbjct: 14 PEQDRAKFEQ---------LQDNLGLHFDNKNLLYNAFTHSS--YVNEHRRKQYEDNERL 62
Query: 269 EFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK 328
EFLGD VL+L S +L+ FP+ EG L+ LR+++V + + N++ F + +
Sbjct: 63 EFLGDAVLELTVSKFLFLKFPKMTEGELTKLRAAIVCEPSLVIFANELNFGEFVLLGKGE 122
Query: 329 VDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKL 384
++R AD EAF+GA+Y+D+G+E F + FP+++ + + D KS+L
Sbjct: 123 EITGGRERPALLADCFEAFVGALYLDQGLETVVGFLETVVFPKVELGMFSHVM-DFKSQL 181
Query: 385 QQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNA 444
Q+ ++ + G Y +I+ GP ++R++ V + L G S ++AE A
Sbjct: 182 QEM---VQQANSGALQ---YTIIKENGPAHNRTFVSQVMLNGKELGVGNGKSKKEAEQKA 235
Query: 445 AKVAL 449
A+ A+
Sbjct: 236 AQSAM 240
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF FP + EG L RAAIV L A + +F+L G ++
Sbjct: 66 GDAVLELTVSKFLFLKFPKMTEGELTKLRAAIVCEPSLVIFANELNFGEFVLLGKGEEIT 125
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E +A+CFEA +GAL+LD G++ +V++
Sbjct: 126 GGRERPALLADCFEAFVGALYLDQGLETVVGFLETVVF 163
>gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|418028850|ref|ZP_12667399.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|354691187|gb|EHE91125.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 231
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
K ++ L+ G+ F +RLL FT S N TLG+ ++LEFLGD VL+ SDYL
Sbjct: 5 KFIKMLDEKYGIRFKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTVSDYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI-INPKVDLKMKDRA---DLL 340
Y HF +EG L+ LRS++V S V D G N+ + + K +A D+
Sbjct: 65 YRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQ--YFILNQEWN-DPKSKLQQ---CCLTLRTL 394
EAF GA+++D+G+EA E+F +P + YF ++++ D + LQQ + R L
Sbjct: 125 EAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVL 184
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ E P + + V V ++LA G + ++AE +AA AL+
Sbjct: 185 N--ESQQPPH-------------FEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F S +L+ F + EG L R+ IV+ + + +A G ++ + G +
Sbjct: 52 GDAVLEFTVSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ K + + FEA GALFLD GI+ ++ S +Y
Sbjct: 112 GGRKRKALLEDVFEAFNGALFLDQGIEAVEKFLSQTVY 149
>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
Length = 241
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 10/228 (4%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G+ F + +L T S + N+RLEFLGD+VLQL + YL+N++ + EG L
Sbjct: 18 GIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDKSEGEL 77
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +R+ +V + V ++ + + + + ++R AD LEA + A+Y+DKG
Sbjct: 78 TKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAAVYLDKG 137
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+E F F + I + D K++LQ+ GE +I +Y +++H GP
Sbjct: 138 IEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQK-----NGEVNI-VYNLVKHEGP 191
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLD 460
+ R + + NE + + G S +++E NAAK ALQ+ I + D
Sbjct: 192 PHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLGEIKWEKD 239
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF+ + D EG L RA +V L ++K + L ++ + G +L
Sbjct: 53 GDSVLQLCVTKYLFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELT 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD 182
E A+ EA++ A++LD GI+VA+
Sbjct: 113 GGRERTSIQADALEAVIAAVYLDKGIEVAN 142
>gi|322376803|ref|ZP_08051296.1| ribonuclease III [Streptococcus sp. M334]
gi|321282610|gb|EFX59617.1| ribonuclease III [Streptococcus sp. M334]
Length = 232
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKKFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKKFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|116333590|ref|YP_795117.1| ribonuclease III [Lactobacillus brevis ATCC 367]
gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
Length = 229
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 13/227 (5%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
Q L+ + F LL FT S + + L +R+EFLGD V+QL+ S+Y++
Sbjct: 7 QELKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVSNYIFRR 66
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAF 343
+P +G L+ LR+++VN ++ + + + + + + + R D+ E+F
Sbjct: 67 YPAMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQRDSLLCDIFESF 126
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y+D+G++ +F FP+L + E+ D K++LQ+ G DI
Sbjct: 127 IGALYMDQGLDKVVEFVTTVVFPKLDEGRFD-EFFDHKTELQELVQK-----NGPVDID- 179
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y++++ GP N R++ VAVY ++ L + G+S + AE NAA+ AL+
Sbjct: 180 YRLLDEEGPDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQNAARHALE 226
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S ++F +P + +G L RAA+V Q A A+ + ++ G +
Sbjct: 51 GDAVMQLVVSNYIFRRYPAMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ + + FE+ +GAL++D G+D
Sbjct: 111 QARQRDSLLCDIFESFIGALYMDQGLD 137
>gi|333897188|ref|YP_004471062.1| ribonuclease 3 [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112453|gb|AEF17390.1| Ribonuclease 3 [Thermoanaerobacterium xylanolyticum LX-11]
Length = 232
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 11/237 (4%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT-LGSNQRLEFLGDTVLQLITSD 282
L + + LE + G FN+ +LL T S + L SN+RLEFLGD+VL ++ S+
Sbjct: 2 ELSDRYENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISE 61
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
YLY + + EG+LS R+ +V + + +I + + NI + ++R AD
Sbjct: 62 YLYKNRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNRDSILAD 121
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA + A+Y+D ++ + F + + + D K+KLQ+ + G E
Sbjct: 122 AMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKM----GSE 177
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
IYK+I+ GP +++ + + V+ RL + G S ++AE AA AL K I
Sbjct: 178 R--VIYKLIDEYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGLI 232
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +L+ D+EEG L+ YRA IV LA A+ I + ++ G ++
Sbjct: 51 GDSVLSIVISEYLYKNRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGI------------DVADQVFSSVLYKDNEVRFKQ 199
+A+ EAL+ A++LD + + ++V S ++Y+D + + ++
Sbjct: 111 GGRNRDSILADAMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQE 169
>gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13]
gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422346389|ref|ZP_16427303.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|422874639|ref|ZP_16921124.1| ribonuclease III [Clostridium perfringens F262]
gi|22654058|sp|Q8XJN8.1|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13]
gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239]
gi|373225934|gb|EHP48261.1| ribonuclease 3 [Clostridium perfringens WAL-14572]
gi|380304280|gb|EIA16569.1| ribonuclease III [Clostridium perfringens F262]
Length = 237
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 10/228 (4%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G+ F + +L T S + N+RLEFLGD+VLQL + YL+N++ + EG L
Sbjct: 14 GIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDKSEGEL 73
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +R+ +V + V ++ + + + + ++R AD LEA + A+Y+DKG
Sbjct: 74 TKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAAVYLDKG 133
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+E F F + I + D K++LQ+ GE +I +Y +++H GP
Sbjct: 134 IEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQK-----NGEVNI-VYNLVKHEGP 187
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLD 460
+ R + + NE + + G S +++E NAAK ALQ+ I + D
Sbjct: 188 PHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLGEIKWEKD 235
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF+ + D EG L RA +V L ++K + L ++ + G +L
Sbjct: 49 GDSVLQLCVTKYLFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD 182
E A+ EA++ A++LD GI+VA+
Sbjct: 109 GGRERTSIQADALEAVIAAVYLDKGIEVAN 138
>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
Length = 254
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 124/251 (49%), Gaps = 23/251 (9%)
Query: 218 QWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS-----NQRLEFLG 272
QW++ P+L E G F+ + L +S +TN T N+RLEFLG
Sbjct: 6 QWMQNLPVL------EERLGYRFSSLERLEEATIHKS--FTNETKKGGVRRDNERLEFLG 57
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVL L+ ++YL +P+ EG LS L+ +V+ + + + +IG+ + I + +
Sbjct: 58 DTVLGLVVAEYLMRLWPDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQ 117
Query: 333 MKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
+++ +D LEA + A+Y D G++A QF F + + D K++LQ+ C
Sbjct: 118 GREKNSILSDALEAVIAAIYQDGGLDAARQFILREFRELFESVSRGESVADYKTQLQEYC 177
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
R L+ +P Y + GP + + + VAV +++ + G+S ++AE AAK A
Sbjct: 178 --QRELE----TLPQYVITGQSGPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAAKSA 231
Query: 449 LQKCPSICPQL 459
L++ L
Sbjct: 232 LERIARTTTDL 242
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L ++PD EG L+ + IV LA +A+ IGL ++L G ++
Sbjct: 57 GDTVLGLVVAEYLMRLWPDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMT 116
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
E +++ EA++ A++ DGG+D A Q
Sbjct: 117 QGREKNSILSDALEAVIAAIYQDGGLDAARQ 147
>gi|406926424|gb|EKD62651.1| hypothetical protein ACD_52C00102G0008 [uncultured bacterium]
Length = 224
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 240 FNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
F++ L T RS + + SN+RLEFLGD +L+ S +LY+ P+ EG L+
Sbjct: 10 FSNKLLFETAMTHRSWLNENGKSRASNERLEFLGDAILEFAVSAFLYDLLPDKEEGFLTA 69
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGME 354
+R++LVN + + N + + + + ++ AD +EA +GA+Y+D+G++
Sbjct: 70 IRANLVNTVNLASIANKLKLGTELYLSRGEEAGGGRENTSLLADTVEALIGALYLDQGLD 129
Query: 355 ACEQFCK-VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
A +F K V F + L+Q D KS LQ+ R L PIY+VIE GP
Sbjct: 130 AARKFIKDVLLFDIDEK--LSQPLKDAKSALQEAV-QARGLSA-----PIYEVIEESGPD 181
Query: 414 NSRSYTVAVYFKNERLAKATGNS 436
+++ +TV+V E +A +G S
Sbjct: 182 HNKQFTVSVLIAGEVVATGSGTS 204
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F S L+ + PD EEG L RA +V +LA +A ++ L + + G +
Sbjct: 43 GDAILEFAVSAFLYDLLPDKEEGFLTAIRANLVNTVNLASIANKLKLGTELYLSRGEEAG 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
E +A+ EAL+GAL+LD G+D A + VL D + + Q + + LQE
Sbjct: 103 GGRENTSLLADTVEALIGALYLDQGLDAARKFIKDVLLFDIDEKLSQPLKDAKSALQE 160
>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
Length = 229
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F + LL T S Y N + +RLEFLGD VLQLI S+YL + + EG LS
Sbjct: 14 FENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIFKYKDFDEGMLSRY 73
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEA 355
R+ V+ S + I + F + +++ KDR D+ E+ + AMY+D G
Sbjct: 74 RAYFVSEEFISELAKQIDLGNFIRLGKGELNSGGKDRPSILCDIFESIVAAMYLDGGYNE 133
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNS 415
+F ++ I + D KS+LQ+ LT + + +P YKV + GP +
Sbjct: 134 ARRFIITIASDKIDEVIQQNIFTDYKSELQK--LTQKIFES----LPDYKVKDETGPEHD 187
Query: 416 RSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+++ V +Y + +G S ++AE +AAK A
Sbjct: 188 KTFIVDLYINDRYYCSGSGKSKKKAEQDAAKKAF 221
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L + D +EG L+ YRA V + ++ LAK+I L +F+ G
Sbjct: 46 GDAVLQLIVSEYLIFKYKDFDEGMLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELNS 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + + FE+++ A++LDGG + A
Sbjct: 106 GGKDRPSILCDIFESIVAAMYLDGGYNEA 134
>gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo]
gi|384207191|ref|YP_005592913.1| ribonuclease III [Borrelia afzelii PKo]
gi|123341290|sp|Q0SMF0.1|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo]
gi|342857075|gb|AEL69923.1| ribonuclease III [Borrelia afzelii PKo]
Length = 245
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 16/233 (6%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSDYLYN 286
++LE S + FN+ LL + S Y+N +N+RLEFLGD+VL LI +D+LY
Sbjct: 20 EFLENLS-IDFNNFDLLNTALSHSS--YSNELDQKSDNNERLEFLGDSVLNLIITDHLYK 76
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
+P EG LS RS +V+ + S + +I + + + + +++ AD +EA
Sbjct: 77 TYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEA 136
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D G +F F ++ ++ D KS LQ+ + P
Sbjct: 137 FVGAIYLDSGFLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKIS------P 190
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
YK+ + +GP + + + V +Y + ++ G S ++AEM AA+VAL+ I
Sbjct: 191 NYKLDKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAMEDI 243
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+ +A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
K +A+ EA +GA++LD G +A +
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFLIATE 152
>gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124]
gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124]
Length = 241
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 10/228 (4%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G+ F + +L T S + N+RLEFLGD+VLQL + YL+N++ + EG L
Sbjct: 18 GIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDKSEGEL 77
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +R+ +V + V ++ + + + + ++R AD LEA + A+Y+DKG
Sbjct: 78 TKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAAVYLDKG 137
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+E F F + I + D K++LQ+ GE +I +Y +++H GP
Sbjct: 138 IEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQK-----NGEVNI-VYNLVKHEGP 191
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLD 460
+ R + + NE + + G S +++E NAAK ALQ+ I + D
Sbjct: 192 PHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLGEIKWEKD 239
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF+ + D EG L RA +V L ++K + L ++ + G +L
Sbjct: 53 GDSVLQLCVTKYLFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELT 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD 182
E A+ EA++ A++LD GI+VA+
Sbjct: 113 GGRERTSIQADALEAVIAAVYLDKGIEVAN 142
>gi|372268566|ref|ZP_09504614.1| ribonuclease III [Alteromonas sp. S89]
Length = 226
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
LQ L G F + LL T RS G N N+RLEFLGD++L S L+ F
Sbjct: 6 LQRLCGRLGYQFTNEELLDLALTHRSHGSRN-----NERLEFLGDSILGFTISAALFEKF 60
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
PE EG +S LR+ LV+ T + V ++ + + ++ R AD +EA +
Sbjct: 61 PEGREGQMSRLRAQLVSGETLAKVARELELGDCLRLGEGEMKSGGHRRASILADAVEAII 120
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GAMY+D G+EA + F PRLQ L + DPK++LQ+ L +P Y
Sbjct: 121 GAMYLDSGLEAARERVLAWFAPRLQSLSL-ETAKDPKTRLQEW------LQARHKPLPEY 173
Query: 405 KVIEHVGPTNSRSYTV 420
+V+E G +S+ + V
Sbjct: 174 QVVEVAGEEHSQQFIV 189
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F S LF FP+ EG ++ RA +V + LA +A+ + L D + G
Sbjct: 44 GDSILGFTISAALFEKFPEGREGQMSRLRAQLVSGETLAKVARELELGDCLRLGEGEMKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD-----------QVFSSVLYKDNEVRFKQWM 201
+A+ EA++GA++LD G++ A Q S KD + R ++W+
Sbjct: 104 GGHRRASILADAVEAIIGAMYLDSGLEAARERVLAWFAPRLQSLSLETAKDPKTRLQEWL 163
Query: 202 YYPQHPLQE 210
PL E
Sbjct: 164 QARHKPLPE 172
>gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H]
gi|90101619|sp|Q47WP5.1|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H]
Length = 266
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L L G FN LL + T RS + N+RLEFLGD++L + ++ LY+ F
Sbjct: 8 LARLTKKLGYEFNEPLLLVQALTHRSAKGAH-----NERLEFLGDSILGFVIAEALYDKF 62
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEA 342
P+H EG L+ +RSSLV T + V D + I+ P +LK D +EA
Sbjct: 63 PKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECL-ILGPG-ELKSGGHHRESILEDAIEA 120
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+GA+Y+D +E C+ F RL E DPK++LQ+ L G + +P
Sbjct: 121 IIGAVYLDSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEF------LQGRKIPLP 174
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAK 446
Y+VI+ G ++++ +TV + A G S ++AE AA+
Sbjct: 175 TYEVIDTTGQSHNQEFTVRCQTSVISEVVIAKGTSRRKAEQEAAQ 219
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+ FP +EG L R+++V+ LA +A+ L + ++ G
Sbjct: 46 GDSILGFVIAEALYDKFPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKS 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ + + EA++GA++LD I+
Sbjct: 106 GGHHRESILEDAIEAIIGAVYLDSNIE 132
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 30/238 (12%)
Query: 233 EYSSGVIFNHIRLLARVFTTRSMGYTNL--TLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
E G +F+ I LL + T +S N + +N+RLEFLGD VL+L S L F E
Sbjct: 26 EKKLGYVFSDISLLKKALTHKSYANENKLPSTENNERLEFLGDAVLELAVSHLLMQMFAE 85
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDI--GMPFFANIINPKVDLKMKDR--ADLLEAFLGA 346
+EG LS LR+++VN + + + +I G F + + KD +D EA LGA
Sbjct: 86 SNEGDLSKLRAAVVNETSLAALAREINLGEFLFLGKGEDQCQGRTKDSLLSDAFEAVLGA 145
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYF---ILNQE-----WNDPKSKLQQCCL-TLRTLDGG 397
+Y D G F KV FP +Q IL Q D K++LQ+ R
Sbjct: 146 IYQDSG------FPKV--FPVIQKLFQGILTQAQTENILKDYKTRLQEVSQEKFRA---- 193
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+P+Y++++ GP + + + V + + G S +QAE NAA++AL K ++
Sbjct: 194 ---VPVYRLVDEKGPDHDKIFHVEIIIAQQLFGNGEGKSKKQAEQNAARMALAKLGAL 248
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L +F + EG L+ RAA+V LA LA+ I L +F+ G D C
Sbjct: 67 GDAVLELAVSHLLMQMFAESNEGDLSKLRAAVVNETSLAALAREINLGEFLFLGKGEDQC 126
Query: 153 HEVELKHAMANCFEALMGALFLDGG----IDVADQVFSSVL--------YKDNEVRFKQ- 199
+++ FEA++GA++ D G V ++F +L KD + R ++
Sbjct: 127 QGRTKDSLLSDAFEAVLGAIYQDSGFPKVFPVIQKLFQGILTQAQTENILKDYKTRLQEV 186
Query: 200 ----WMYYPQHPL-QEQEPDGDR 217
+ P + L E+ PD D+
Sbjct: 187 SQEKFRAVPVYRLVDEKGPDHDK 209
>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
Length = 222
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 24/231 (10%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM-GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
++ LE G F +LL T +S+ G N N+RLEFLGD V+ L+ DYL++
Sbjct: 1 MRNLEEKLGYKFKDEKLLKTALTHKSVKGGAN-----NERLEFLGDAVMDLVIGDYLFHK 55
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVD-----LKMKDRADLLEA 342
F EG LS LR++LVN ++ + + + + N I+P + LK +D EA
Sbjct: 56 FSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLIN-ISPAEEHNGGRLKASILSDAFEA 114
Query: 343 FLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+GA+Y++ G +A F +P + + + +++ +L Q
Sbjct: 115 LMGAIYLESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFA--------- 165
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+IP Y ++ GP + + + +A+ +++A G S ++AE AAK AL+
Sbjct: 166 EIPKYVLVGSKGPDHKKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALE 216
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA-----H 147
G+ + +LFH F + EG L+ RAA+V + A LAK + L + + +
Sbjct: 40 GDAVMDLVIGDYLFHKFSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHN 99
Query: 148 GSDLCHEVELKHAMANCFEALMGALFLDGGIDV 180
G L + +++ FEALMGA++L+ G D
Sbjct: 100 GGRLKASI-----LSDAFEALMGAIYLESGFDA 127
>gi|385262508|ref|ZP_10040612.1| ribonuclease III [Streptococcus sp. SK643]
gi|385190409|gb|EIF37856.1| ribonuclease III [Streptococcus sp. SK643]
Length = 232
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVTKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGHGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVTKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|418148647|ref|ZP_12785412.1| ribonuclease III [Streptococcus pneumoniae GA13856]
gi|418200143|ref|ZP_12836588.1| ribonuclease III [Streptococcus pneumoniae GA47976]
gi|419523501|ref|ZP_14063079.1| ribonuclease III [Streptococcus pneumoniae GA13723]
gi|353813322|gb|EHD93555.1| ribonuclease III [Streptococcus pneumoniae GA13856]
gi|353865190|gb|EHE45099.1| ribonuclease III [Streptococcus pneumoniae GA47976]
gi|379557418|gb|EHZ22463.1| ribonuclease III [Streptococcus pneumoniae GA13723]
Length = 232
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTYLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + FEA +GAL LD DVA
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDK--DVA 136
>gi|149002616|ref|ZP_01827548.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
gi|168485011|ref|ZP_02709949.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
gi|168491168|ref|ZP_02715311.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
gi|225856914|ref|YP_002738425.1| ribonuclease III [Streptococcus pneumoniae P1031]
gi|237649948|ref|ZP_04524200.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974]
gi|237822503|ref|ZP_04598348.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974M2]
gi|417696436|ref|ZP_12345615.1| ribonuclease III [Streptococcus pneumoniae GA47368]
gi|417698650|ref|ZP_12347822.1| ribonuclease III [Streptococcus pneumoniae GA41317]
gi|418091874|ref|ZP_12729016.1| ribonuclease III [Streptococcus pneumoniae GA44452]
gi|418107669|ref|ZP_12744707.1| ribonuclease III [Streptococcus pneumoniae GA41410]
gi|418110218|ref|ZP_12747241.1| ribonuclease III [Streptococcus pneumoniae GA49447]
gi|418144084|ref|ZP_12780884.1| ribonuclease III [Streptococcus pneumoniae GA13494]
gi|418162305|ref|ZP_12798989.1| ribonuclease III [Streptococcus pneumoniae GA17328]
gi|418169269|ref|ZP_12805912.1| ribonuclease III [Streptococcus pneumoniae GA19077]
gi|418176059|ref|ZP_12812653.1| ribonuclease III [Streptococcus pneumoniae GA41437]
gi|418189477|ref|ZP_12825992.1| ribonuclease III [Streptococcus pneumoniae GA47373]
gi|418193858|ref|ZP_12830349.1| ribonuclease III [Streptococcus pneumoniae GA47439]
gi|418202484|ref|ZP_12838914.1| ribonuclease III [Streptococcus pneumoniae GA52306]
gi|418218986|ref|ZP_12845653.1| ribonuclease III [Streptococcus pneumoniae NP127]
gi|418221300|ref|ZP_12847953.1| ribonuclease III [Streptococcus pneumoniae GA47751]
gi|418238809|ref|ZP_12865362.1| ribonuclease III [Streptococcus pneumoniae NorthCarolina6A-23]
gi|419423034|ref|ZP_13963249.1| ribonuclease III [Streptococcus pneumoniae GA43264]
gi|419443120|ref|ZP_13983146.1| ribonuclease III [Streptococcus pneumoniae GA13224]
gi|419453348|ref|ZP_13993321.1| ribonuclease III [Streptococcus pneumoniae EU-NP03]
gi|419457632|ref|ZP_13997576.1| ribonuclease III [Streptococcus pneumoniae GA02254]
gi|419460077|ref|ZP_14000007.1| ribonuclease III [Streptococcus pneumoniae GA02270]
gi|419462410|ref|ZP_14002316.1| ribonuclease III [Streptococcus pneumoniae GA02714]
gi|419488228|ref|ZP_14027981.1| ribonuclease III [Streptococcus pneumoniae GA44386]
gi|419495514|ref|ZP_14035232.1| ribonuclease III [Streptococcus pneumoniae GA47461]
gi|419506161|ref|ZP_14045822.1| ribonuclease III [Streptococcus pneumoniae GA49194]
gi|419525983|ref|ZP_14065545.1| ribonuclease III [Streptococcus pneumoniae GA14373]
gi|421272820|ref|ZP_15723662.1| ribonuclease III [Streptococcus pneumoniae SPAR55]
gi|421303415|ref|ZP_15754079.1| ribonuclease III [Streptococcus pneumoniae GA17484]
gi|444410049|ref|ZP_21206603.1| ribonuclease III [Streptococcus pneumoniae PNI0076]
gi|444413110|ref|ZP_21209426.1| ribonuclease III [Streptococcus pneumoniae PNI0153]
gi|444414819|ref|ZP_21211069.1| ribonuclease III [Streptococcus pneumoniae PNI0199]
gi|444423315|ref|ZP_21218930.1| ribonuclease III [Streptococcus pneumoniae PNI0446]
gi|254807905|sp|C1CKY7.1|RNC_STRZP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|147759227|gb|EDK66220.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
gi|172041872|gb|EDT49918.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
gi|183574495|gb|EDT95023.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
gi|225724496|gb|ACO20348.1| ribonuclease III [Streptococcus pneumoniae P1031]
gi|332200695|gb|EGJ14767.1| ribonuclease III [Streptococcus pneumoniae GA41317]
gi|332201711|gb|EGJ15781.1| ribonuclease III [Streptococcus pneumoniae GA47368]
gi|353763974|gb|EHD44524.1| ribonuclease III [Streptococcus pneumoniae GA44452]
gi|353779852|gb|EHD60316.1| ribonuclease III [Streptococcus pneumoniae GA41410]
gi|353782421|gb|EHD62855.1| ribonuclease III [Streptococcus pneumoniae GA49447]
gi|353809825|gb|EHD90085.1| ribonuclease III [Streptococcus pneumoniae GA13494]
gi|353827734|gb|EHE07883.1| ribonuclease III [Streptococcus pneumoniae GA17328]
gi|353834454|gb|EHE14555.1| ribonuclease III [Streptococcus pneumoniae GA19077]
gi|353841498|gb|EHE21553.1| ribonuclease III [Streptococcus pneumoniae GA41437]
gi|353856619|gb|EHE36588.1| ribonuclease III [Streptococcus pneumoniae GA47373]
gi|353859078|gb|EHE39033.1| ribonuclease III [Streptococcus pneumoniae GA47439]
gi|353868287|gb|EHE48177.1| ribonuclease III [Streptococcus pneumoniae GA52306]
gi|353874610|gb|EHE54464.1| ribonuclease III [Streptococcus pneumoniae GA47751]
gi|353875641|gb|EHE55493.1| ribonuclease III [Streptococcus pneumoniae NP127]
gi|353893211|gb|EHE72957.1| ribonuclease III [Streptococcus pneumoniae NorthCarolina6A-23]
gi|379531505|gb|EHY96739.1| ribonuclease III [Streptococcus pneumoniae GA02254]
gi|379531881|gb|EHY97114.1| ribonuclease III [Streptococcus pneumoniae GA02714]
gi|379532052|gb|EHY97284.1| ribonuclease III [Streptococcus pneumoniae GA02270]
gi|379550585|gb|EHZ15682.1| ribonuclease III [Streptococcus pneumoniae GA13224]
gi|379558243|gb|EHZ23279.1| ribonuclease III [Streptococcus pneumoniae GA14373]
gi|379587560|gb|EHZ52408.1| ribonuclease III [Streptococcus pneumoniae GA43264]
gi|379590343|gb|EHZ55181.1| ribonuclease III [Streptococcus pneumoniae GA44386]
gi|379595596|gb|EHZ60404.1| ribonuclease III [Streptococcus pneumoniae GA47461]
gi|379608075|gb|EHZ72821.1| ribonuclease III [Streptococcus pneumoniae GA49194]
gi|379627057|gb|EHZ91673.1| ribonuclease III [Streptococcus pneumoniae EU-NP03]
gi|395874474|gb|EJG85557.1| ribonuclease III [Streptococcus pneumoniae SPAR55]
gi|395902037|gb|EJH12973.1| ribonuclease III [Streptococcus pneumoniae GA17484]
gi|444273269|gb|ELU78942.1| ribonuclease III [Streptococcus pneumoniae PNI0153]
gi|444278358|gb|ELU83814.1| ribonuclease III [Streptococcus pneumoniae PNI0076]
gi|444281068|gb|ELU86403.1| ribonuclease III [Streptococcus pneumoniae PNI0199]
gi|444287192|gb|ELU92130.1| ribonuclease III [Streptococcus pneumoniae PNI0446]
Length = 232
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVAKVKEFIYQVIIPKVEAGEFEMITDYKTH-LQE 167
>gi|404370911|ref|ZP_10976226.1| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
gi|404301521|gb|EEH98168.2| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 10/231 (4%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
++ +E S G+ FN +LL T S + N+R EFLGD++LQL ++YL+ ++
Sbjct: 6 IKEVEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEYLFLNY 65
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
EG L+ +RS +V + + + + +F I + ++R AD +EA L
Sbjct: 66 KNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELTGGRERVSIIADAVEALL 125
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
+Y+DKG+E + + F + I N D K+KLQ+ GE I IY
Sbjct: 126 AGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQE-----EMQKSGEVSI-IY 179
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+++++ GP + R + +V ++ L K G S +++E NAAK AL+ +
Sbjct: 180 ELLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKEALRNLEEL 230
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF + + EG L R+ IV L + K++ L F+ + G +L
Sbjct: 49 GDSILQLCITEYLFLNYKNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
E +A+ EAL+ ++LD G++
Sbjct: 109 GGRERVSIIADAVEALLAGIYLDKGLE 135
>gi|394993931|ref|ZP_10386670.1| ribonuclease III [Bacillus sp. 916]
gi|452855540|ref|YP_007497223.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|393805255|gb|EJD66635.1| ribonuclease III [Bacillus sp. 916]
gi|452079800|emb|CCP21557.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 249
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 23/238 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 QFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G++ +QF KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVM-DFKSQLQEFVQR---- 186
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
G+ + YK++ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 -DGKGSLE-YKILNEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYY 203
+ +A+ FEA +GAL+LD G+D Q ++ K N+ F M +
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDF 176
>gi|406967857|gb|EKD92839.1| hypothetical protein ACD_28C00319G0003 [uncultured bacterium]
Length = 232
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDI--GMPFF 321
SN+RLEFLGD VL+L+ +++L+ ++P + EG L+ RS+LV + + ++ G F
Sbjct: 43 SNERLEFLGDAVLELVVTEFLFKNYP-NDEGELTNWRSALVKGSHLAHIAKELNLGEYLF 101
Query: 322 ANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ K + K+ A+ EA LGA+Y+DKG E +F L+ + D
Sbjct: 102 LSHGEEKSGGRTKNYILANTFEALLGAIYLDKGYEVAHKFINDFVLIYLENILEKGLHID 161
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
PKSK Q+ E P+Y+++E GP + + +T+ VY +A G+S Q
Sbjct: 162 PKSKFQEMA------QDKEGVTPVYRLVEEQGPDHEKEFTMGVYLGEALIATGKGSSKQT 215
Query: 440 AEMNAAKVALQ 450
AE +AA L+
Sbjct: 216 AEQSAALEGLK 226
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 19/146 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + + LF +P+ +EG L +R+A+V+ HLAH+AK + L +++ +HG +
Sbjct: 51 GDAVLELVVTEFLFKNYPN-DEGELTNWRSALVKGSHLAHIAKELNLGEYLFLSHGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+ +AN FEAL+GA++LD G +VA + + L+ D + +F++
Sbjct: 110 GGRTKNYILANTFEALLGAIYLDKGYEVAHKFINDFVLIYLENILEKGLHIDPKSKFQEM 169
Query: 201 M-----YYPQHPL-QEQEPDGDRQWV 220
P + L +EQ PD ++++
Sbjct: 170 AQDKEGVTPVYRLVEEQGPDHEKEFT 195
>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
gi|429505144|ref|YP_007186328.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|189043290|sp|A7Z4L3.1|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
gi|429486734|gb|AFZ90658.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 249
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 23/237 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 QFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G++ +QF KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVM-DFKSQLQEFVQR---- 186
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G+ + YK++ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 -DGKGSLE-YKILNEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYY 203
+ +A+ FEA +GAL+LD G+D Q ++ K N+ F M +
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDF 176
>gi|402829248|ref|ZP_10878124.1| ribonuclease III [Slackia sp. CM382]
gi|402284229|gb|EJU32732.1| ribonuclease III [Slackia sp. CM382]
Length = 312
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 132/296 (44%), Gaps = 42/296 (14%)
Query: 221 EQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLIT 280
EQS L Q++ GV F+ I +L T S S +RLEFLGD++L I
Sbjct: 6 EQSAKLDLAQHV---IGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIV 62
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADL- 339
++ ++ +PE EG L+ ++ +LV+ + S V +G FA+II + R L
Sbjct: 63 ANEAFHAYPEIDEGGLTRIKVALVSGSSLSDVAAKLG---FADIIVFGSSERGTGRRGLH 119
Query: 340 ------LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRT 393
EA + A+++DKGM+ F + PR+ + +E +PKS LQ+
Sbjct: 120 SALENVYEAVVAALFLDKGMDGARDFVRRTLIPRMD-IEMAREPENPKSALQEKLQE--- 175
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ--- 450
E P YK++E GP + R++ V+ LA+ G + +++E AAK AL
Sbjct: 176 ----EGITPTYKLVETQGPPHDRTFVSQVFAGLTALAQGIGRTKKESESQAAKAALDMID 231
Query: 451 ----KCPSICP----QLDHQKRVIAKSIELQKH----------EGIFGAWASFSCW 488
+ P Q KR AK+ E Q+ E G ASF W
Sbjct: 232 ADGAQAPDARTMKELQKAEAKRAQAKAKEEQRRAKEEAKRQRAEARKGKDASFFGW 287
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + FH +P+I+EGGL + A+V L+ +A ++G D +++
Sbjct: 54 GDSILGAIVANEAFHAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
L A+ N +EA++ ALFLD G+D A L ++ + P+ LQE+
Sbjct: 114 GRRGLHSALENVYEAVVAALFLDKGMDGARDFVRRTLIPRMDIEMAREPENPKSALQEK 172
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 15/225 (6%)
Query: 231 YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
+LE + GV + LL R T RS Y N L +N+RLEFLGD+VL ++ + L+++ P+
Sbjct: 13 HLEAAFGVSLDP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMP-FFANIINPKVDLKMKDR------ADLLEAF 343
EG L+ LR+S+VN R + V +G A ++ K + R AD LEA
Sbjct: 72 LPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEAL 131
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+Y+ G++ F P + D K+ LQ+ L +P
Sbjct: 132 LGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGL------GVPE 185
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
Y+ IE GP + +++T V R A G S ++AE AA+ A
Sbjct: 186 YR-IEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESA 229
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGS 149
G++ + + LFH PD+ EG LA RA++V + LA +A+ + GL ++L G
Sbjct: 53 GDSVLGVVITTALFHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGE 112
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + +A+ EAL+GA++L G+D A
Sbjct: 113 EATGGRDKASILADTLEALLGAIYLQYGLDTA 144
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 15/225 (6%)
Query: 231 YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
+LE + GV + LL R T RS Y N L +N+RLEFLGD+VL ++ + L+++ P+
Sbjct: 13 HLEAAFGVSLDP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMP-FFANIINPKVDLKMKDR------ADLLEAF 343
EG L+ LR+S+VN R + V +G A ++ K + R AD LEA
Sbjct: 72 LPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEAL 131
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+Y+ G++ F P + D K+ LQ+ L +P
Sbjct: 132 LGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGL------GVPE 185
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
Y+ IE GP + +++T V R A G S ++AE AA+ A
Sbjct: 186 YR-IEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESA 229
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGS 149
G++ + + LFH PD+ EG LA RA++V + LA +A+ + GL ++L G
Sbjct: 53 GDSVLGVVITTALFHNHPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGE 112
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + +A+ EAL+GA++L G+D A
Sbjct: 113 EATGGRDKASILADTLEALLGAIYLQYGLDTA 144
>gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
Length = 238
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 15/231 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNH 287
++ ++ + V FN LL T S + N NQRLEFLGD VL +I ++ L+
Sbjct: 15 VERVKEKTRVSFNDKDLLIEALTHPSFKHENPNFKQDNQRLEFLGDAVLNMIITEILFQR 74
Query: 288 FPEHHEGHLSLLRSSLVNNRT--QSVVCNDIGMPFFANIINPKVDLKMKDR--ADLLEAF 343
+ E EG L+ R LV T + D+G + K + K +DL EAF
Sbjct: 75 YREASEGFLTQKRIYLVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAF 134
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y+DKG E + F + F ++ + +W + L+T E P
Sbjct: 135 IGALYLDKGYEYTKNFVEEIFKEEIESIEMEVDWKN----------LLQTYLQKEGKKPQ 184
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
Y V VGP + +++ V ++ +E++++ G + ++AE+ AA+ AL+K +
Sbjct: 185 YIVSREVGPEHDKTFYVELWIDDEKISEGEGKNKREAEIKAAQKALEKIKN 235
>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
Length = 241
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 124/235 (52%), Gaps = 24/235 (10%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
P +K + ++Y FN + LL + T +S + N+RLEFLGD VL +I ++
Sbjct: 20 PFVKLQRLIDYQ----FNDVSLLKQALTHKSAHRQH-----NERLEFLGDAVLGMIVGEH 70
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ FP EG L+ +RS++V T + + + G+ F + ++ K R AD+
Sbjct: 71 LFKAFPNSPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKSGGKQRYSILADV 130
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+E+ +GA+Y+D GM C F F R+ + D K++LQ+ L R +
Sbjct: 131 VESIIGAIYLDAGMNQCYDFIHAWFGARIAKLDPDVHPKDAKTRLQE-YLQSRGI----- 184
Query: 400 DIPIYKVIEHVGPTNSRSYTVA---VYFKNERLAKATGNSIQQAEMNAAKVALQK 451
++P+Y+V++ G +++++TV+ V + +A G S ++AE AA++ L+K
Sbjct: 185 ELPVYEVVDIKGKDHNQTFTVSCNTVTLSDP--IQAQGASRKRAEQIAAQLTLEK 237
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I HLF FP+ EG L R+AIV+ LA +A GL +F+ G
Sbjct: 59 GDAVLGMIVGEHLFKAFPNSPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKS 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ E+++GA++LD G++
Sbjct: 119 GGKQRYSILADVVESIIGAIYLDAGMN 145
>gi|307704936|ref|ZP_07641827.1| ribonuclease III [Streptococcus mitis SK597]
gi|307621550|gb|EFO00596.1| ribonuclease III [Streptococcus mitis SK597]
Length = 232
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFADKNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVVKVKEFIYQVMIPKVEAGEFEM-ITDYKTHLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGG-IDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + ++ ++ K F+ Y H LQE
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDKDVVKVKEFIYQVMIPKVEAGEFEMITDYKTH-LQE 167
>gi|452974503|gb|EME74323.1| ribonuclease III [Bacillus sonorensis L12]
Length = 249
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 19/244 (7%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFL 271
DR+ V++ +Q + + V F + +LL + FT S Y N N+RLEFL
Sbjct: 9 DRKMVQKKA--EQFKKFQERISVQFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFL 64
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+L S +LY +P EG L+ LR+++V + + +++ + +
Sbjct: 65 GDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMT 124
Query: 332 KMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQC 387
+ R AD+ EAF+GA+Y+D+G+++ F K FP++ + D KS+LQ+
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLDSVVAFLKAYVFPKIDDGAFSHVM-DFKSQLQEF 183
Query: 388 CLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKV 447
DG YK+++ GP ++R + V K E L +G S ++AE +AA+
Sbjct: 184 V----QRDG--RGTLEYKILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQE 237
Query: 448 ALQK 451
AL K
Sbjct: 238 ALAK 241
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAAIV L LA + + +L G ++
Sbjct: 65 GDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ FEA +GAL+LD G+D
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLD 151
>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|389867284|ref|YP_006374707.1| ribonuclease III [Enterococcus faecium DO]
gi|424763790|ref|ZP_18191255.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|424791403|ref|ZP_18217835.1| ribonuclease III [Enterococcus faecium V689]
gi|424797447|ref|ZP_18223031.1| ribonuclease III [Enterococcus faecium S447]
gi|424828237|ref|ZP_18252973.1| ribonuclease III [Enterococcus faecium R501]
gi|424854841|ref|ZP_18279184.1| ribonuclease III [Enterococcus faecium R499]
gi|424869418|ref|ZP_18293122.1| ribonuclease III [Enterococcus faecium R497]
gi|424950205|ref|ZP_18365376.1| ribonuclease III [Enterococcus faecium R496]
gi|424954344|ref|ZP_18369246.1| ribonuclease III [Enterococcus faecium R494]
gi|424958431|ref|ZP_18373077.1| ribonuclease III [Enterococcus faecium R446]
gi|424960282|ref|ZP_18374813.1| ribonuclease III [Enterococcus faecium P1986]
gi|424965596|ref|ZP_18379547.1| ribonuclease III [Enterococcus faecium P1190]
gi|424969514|ref|ZP_18383084.1| ribonuclease III [Enterococcus faecium P1140]
gi|424970489|ref|ZP_18383998.1| ribonuclease III [Enterococcus faecium P1139]
gi|424974109|ref|ZP_18387361.1| ribonuclease III [Enterococcus faecium P1137]
gi|424976652|ref|ZP_18389725.1| ribonuclease III [Enterococcus faecium P1123]
gi|424981080|ref|ZP_18393833.1| ribonuclease III [Enterococcus faecium ERV99]
gi|424984594|ref|ZP_18397122.1| ribonuclease III [Enterococcus faecium ERV69]
gi|424987454|ref|ZP_18399829.1| ribonuclease III [Enterococcus faecium ERV38]
gi|424990906|ref|ZP_18403096.1| ribonuclease III [Enterococcus faecium ERV26]
gi|424994563|ref|ZP_18406498.1| ribonuclease III [Enterococcus faecium ERV168]
gi|424997392|ref|ZP_18409155.1| ribonuclease III [Enterococcus faecium ERV165]
gi|425001410|ref|ZP_18412929.1| ribonuclease III [Enterococcus faecium ERV161]
gi|425003989|ref|ZP_18415319.1| ribonuclease III [Enterococcus faecium ERV102]
gi|425006908|ref|ZP_18418063.1| ribonuclease III [Enterococcus faecium ERV1]
gi|425010840|ref|ZP_18421771.1| ribonuclease III [Enterococcus faecium E422]
gi|425014158|ref|ZP_18424853.1| ribonuclease III [Enterococcus faecium E417]
gi|425017866|ref|ZP_18428347.1| ribonuclease III [Enterococcus faecium C621]
gi|425020875|ref|ZP_18431162.1| ribonuclease III [Enterococcus faecium C497]
gi|425030492|ref|ZP_18435665.1| ribonuclease III [Enterococcus faecium C1904]
gi|425032631|ref|ZP_18437657.1| ribonuclease III [Enterococcus faecium 515]
gi|425035582|ref|ZP_18440417.1| ribonuclease III [Enterococcus faecium 514]
gi|425037922|ref|ZP_18442559.1| ribonuclease III [Enterococcus faecium 513]
gi|425041759|ref|ZP_18446142.1| ribonuclease III [Enterococcus faecium 511]
gi|425045378|ref|ZP_18449484.1| ribonuclease III [Enterococcus faecium 510]
gi|425048552|ref|ZP_18452452.1| ribonuclease III [Enterococcus faecium 509]
gi|425051643|ref|ZP_18455300.1| ribonuclease III [Enterococcus faecium 506]
gi|425054205|ref|ZP_18457718.1| ribonuclease III [Enterococcus faecium 505]
gi|425058185|ref|ZP_18461576.1| ribonuclease III [Enterococcus faecium 504]
gi|425060584|ref|ZP_18463875.1| ribonuclease III [Enterococcus faecium 503]
gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
gi|388532533|gb|AFK57725.1| ribonuclease III [Enterococcus faecium DO]
gi|402421966|gb|EJV54209.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|402919418|gb|EJX40018.1| ribonuclease III [Enterococcus faecium V689]
gi|402921003|gb|EJX41473.1| ribonuclease III [Enterococcus faecium S447]
gi|402922876|gb|EJX43220.1| ribonuclease III [Enterococcus faecium R501]
gi|402932233|gb|EJX51763.1| ribonuclease III [Enterococcus faecium R499]
gi|402933494|gb|EJX52920.1| ribonuclease III [Enterococcus faecium R496]
gi|402935590|gb|EJX54830.1| ribonuclease III [Enterococcus faecium R497]
gi|402936978|gb|EJX56122.1| ribonuclease III [Enterococcus faecium R494]
gi|402940215|gb|EJX59069.1| ribonuclease III [Enterococcus faecium R446]
gi|402943291|gb|EJX61787.1| ribonuclease III [Enterococcus faecium P1190]
gi|402948361|gb|EJX66507.1| ribonuclease III [Enterococcus faecium P1986]
gi|402948484|gb|EJX66621.1| ribonuclease III [Enterococcus faecium P1140]
gi|402957456|gb|EJX74847.1| ribonuclease III [Enterococcus faecium P1137]
gi|402961653|gb|EJX78665.1| ribonuclease III [Enterococcus faecium P1139]
gi|402964694|gb|EJX81462.1| ribonuclease III [Enterococcus faecium ERV99]
gi|402968541|gb|EJX85020.1| ribonuclease III [Enterococcus faecium ERV69]
gi|402968950|gb|EJX85399.1| ribonuclease III [Enterococcus faecium P1123]
gi|402974331|gb|EJX90387.1| ribonuclease III [Enterococcus faecium ERV38]
gi|402978365|gb|EJX94109.1| ribonuclease III [Enterococcus faecium ERV26]
gi|402979859|gb|EJX95504.1| ribonuclease III [Enterococcus faecium ERV168]
gi|402986368|gb|EJY01496.1| ribonuclease III [Enterococcus faecium ERV165]
gi|402986862|gb|EJY01966.1| ribonuclease III [Enterococcus faecium ERV161]
gi|402990642|gb|EJY05507.1| ribonuclease III [Enterococcus faecium ERV102]
gi|402996112|gb|EJY10515.1| ribonuclease III [Enterococcus faecium ERV1]
gi|402998652|gb|EJY12898.1| ribonuclease III [Enterococcus faecium E422]
gi|402999508|gb|EJY13695.1| ribonuclease III [Enterococcus faecium E417]
gi|403002725|gb|EJY16671.1| ribonuclease III [Enterococcus faecium C1904]
gi|403003493|gb|EJY17390.1| ribonuclease III [Enterococcus faecium C621]
gi|403008053|gb|EJY21582.1| ribonuclease III [Enterococcus faecium C497]
gi|403012388|gb|EJY25615.1| ribonuclease III [Enterococcus faecium 515]
gi|403017688|gb|EJY30416.1| ribonuclease III [Enterococcus faecium 514]
gi|403020703|gb|EJY33211.1| ribonuclease III [Enterococcus faecium 513]
gi|403025540|gb|EJY37618.1| ribonuclease III [Enterococcus faecium 511]
gi|403027144|gb|EJY39053.1| ribonuclease III [Enterococcus faecium 510]
gi|403030483|gb|EJY42166.1| ribonuclease III [Enterococcus faecium 509]
gi|403036473|gb|EJY47821.1| ribonuclease III [Enterococcus faecium 505]
gi|403037263|gb|EJY48563.1| ribonuclease III [Enterococcus faecium 506]
gi|403038979|gb|EJY50160.1| ribonuclease III [Enterococcus faecium 504]
gi|403042468|gb|EJY53418.1| ribonuclease III [Enterococcus faecium 503]
Length = 231
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 219 WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVL 276
W + L K+L+ + ++F+ + LL + FT S + NL L N+RLEFLGD VL
Sbjct: 2 WKMDNQLTKELKE---NYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVL 58
Query: 277 QLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR 336
+L+ S YL+ +P EG L+ R+++V + S + + + + + + R
Sbjct: 59 ELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTR 118
Query: 337 A----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
DL EAFLGA+Y+D+G + F + FP+++ + E D K+KLQ+
Sbjct: 119 PALLCDLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEM-DHKTKLQEVLQK-- 175
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
D+ I Y++I GP + R + + VY ++ + G S
Sbjct: 176 -----SGDVSIEYRLINEEGPAHERVFWIEVYVDDQLIGTGQGKS 215
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +LF ++P + EG L RAAIV+ L+ AK + ++L G +
Sbjct: 54 GDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENS 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD G D V++
Sbjct: 114 GGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 151
>gi|408828137|ref|ZP_11213027.1| ribonuclease III [Streptomyces somaliensis DSM 40738]
Length = 257
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 248 RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307
R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++VN+R
Sbjct: 2 RALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSR 61
Query: 308 TQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVC 363
+ V + + F + + +D+ AD LEA +GA+Y+DKG++A +
Sbjct: 62 ALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDKGLDAASELVHPL 121
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVY 423
F P ++ D K+ LQ+ L +G +P Y V E GP + +++T A
Sbjct: 122 FDPLIEKSSNLGAGLDWKTSLQE----LTAAEG--LGVPEYLVTE-TGPDHEKTFTAAAR 174
Query: 424 FKNERLAKATGNS 436
TG S
Sbjct: 175 VGGVSYGTGTGRS 187
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 26 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGT 85
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 86 GGRDKASILADTLEAVIGAVYLDKGLDAASELVHPLFDPLIEKSSNLGAGLDWKTSLQEL 145
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 146 TAAEGLGVPEYLVTETGPDHEKTFT 170
>gi|373464406|ref|ZP_09555945.1| ribonuclease III [Lactobacillus kisonensis F0435]
gi|371762608|gb|EHO51137.1| ribonuclease III [Lactobacillus kisonensis F0435]
Length = 229
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 17/200 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLR 300
LL FT S Y N G N +RLEFLGD VLQLI S Y++ +P+ +G L+ LR
Sbjct: 15 LLDEAFTQAS--YVNEHKGQNLKFYERLEFLGDAVLQLIVSSYIFQRYPKMPQGRLTRLR 72
Query: 301 SSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEAC 356
+++VN ++ S + + + + ++R D+ E+F+GA+Y+D+G
Sbjct: 73 AAMVNEKSFSTFARECTFDKYIRLGRGEEKAGARNRDSLLCDIFESFVGAVYLDQGQATV 132
Query: 357 EQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSR 416
E+F + FP+L + E+ D K++LQ+ G DI Y++I+ GP N R
Sbjct: 133 EKFVQQVIFPKLDEGMF-AEFFDHKTELQELAQA-----DGPVDID-YELIDEFGPDNDR 185
Query: 417 SYTVAVYFKNERLAKATGNS 436
S+ V V ++ G+S
Sbjct: 186 SFKVNVSIGDKLFGVGIGHS 205
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 87 YMYIHKGNNFS-------------QFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 133
Y+ HKG N Q I S ++F +P + +G L RAA+V + +
Sbjct: 25 YVNEHKGQNLKFYERLEFLGDAVLQLIVSSYIFQRYPKMPQGRLTRLRAAMVNEKSFSTF 84
Query: 134 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KD 192
A+ + ++ G + + + FE+ +GA++LD G ++ V++ K
Sbjct: 85 ARECTFDKYIRLGRGEEKAGARNRDSLLCDIFESFVGAVYLDQGQATVEKFVQQVIFPKL 144
Query: 193 NEVRFKQWMYYPQHPLQEQEPDG 215
+E F ++ + + + DG
Sbjct: 145 DEGMFAEFFDHKTELQELAQADG 167
>gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a]
gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|365992396|ref|NP_212839.2| ribonuclease III [Borrelia burgdorferi B31]
gi|387826338|ref|YP_005805791.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|387827603|ref|YP_005806885.1| ribonuclease III [Borrelia burgdorferi N40]
gi|384872624|sp|O51648.2|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a]
gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7]
gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a]
gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b]
gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23]
gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a]
gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a]
gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26]
gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805]
gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1]
gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40]
gi|356609400|gb|AAC67040.2| ribonuclease III [Borrelia burgdorferi B31]
Length = 245
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 10/196 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
+N+RLEFLGD+VL LI +D+LY +P EG LS RS +V+ + S + +I + +
Sbjct: 54 NNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYIL 113
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + +++ AD +EAF+GA+Y+D G +F F ++ ++ D
Sbjct: 114 LGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKD 173
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
KS LQ+ + P YK+ + +GP + + + V +Y ++ G S ++
Sbjct: 174 YKSLLQEYVQKKYKIS------PSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKE 227
Query: 440 AEMNAAKVALQKCPSI 455
AEM AA+VAL+ +I
Sbjct: 228 AEMRAAEVALKAMENI 243
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+++A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKD-----NEV 195
K +A+ EA +GA++LD G A + +F+ +KD E
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEY 181
Query: 196 RFKQWMYYPQHPL-QEQEPDGDR 217
K++ P + L +E PD D+
Sbjct: 182 VQKKYKISPSYKLDKEIGPDHDK 204
>gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544]
gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544]
Length = 247
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFT-TRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+QL L GV F+ I LL + T T + N+RLEFLGD VL+L +S YLY
Sbjct: 15 QQLLVLSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLY 74
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
HFPE EG L+ R+S+V + T + + + + + + + + R D+ E
Sbjct: 75 EHFPEMPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFE 134
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y+D+G EA + + + D K+ LQ+ E
Sbjct: 135 AVIGAVYLDQGWEAAQAYVVRQLRGEFENAEHGAILKDYKTILQEIVFR------KEGQS 188
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDH 461
Y+++ GP +++ +T V + + + TG+S ++AE +AA+ AL+K I P
Sbjct: 189 IAYELVSESGPDHAKEFTFRVRVTGKVMGEGTGHSKKEAEQHAARRALEK---IAPHTQK 245
Query: 462 QK 463
++
Sbjct: 246 KR 247
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +S +L+ FP++ EG L RA+IV + LA LA + L D++L G ++
Sbjct: 61 GDAVLELASSTYLYEHFPEMPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMG 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + + FEA++GA++LD G + A
Sbjct: 121 GGRTRQTNLEDVFEAVIGAVYLDQGWEAA 149
>gi|385810564|ref|YP_005846960.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
gi|383802612|gb|AFH49692.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
Length = 258
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 18/198 (9%)
Query: 263 GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA 322
SN+RLEFLGD VL LIT++YL++ +P+ EG L+ +R+ +VN + + +IG+ F
Sbjct: 67 ASNERLEFLGDAVLSLITAEYLFHLYPDKDEGFLTKVRAKIVNRNSLADSAEEIGLVKFL 126
Query: 323 NIINPKVDLKMKDRA-----DLLEAFLGAMYIDKGMEACEQFC-KVCFFPRLQY--FILN 374
+IN + A D EA +GA+Y+D+G++A F KV P ++ +++
Sbjct: 127 -LINQNLSNTFSRGAKTVLSDAFEALVGALYLDQGLDAGRVFIRKVLIDPIVEAGEHLVD 185
Query: 375 QEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG 434
+ + KS+L L + ++P YKVI+ GP + R +TV V ++ + G
Sbjct: 186 ENY---KSQL------LEYAQANKLELPNYKVIKEEGPQHERIFTVQVSVGDKIIGIGKG 236
Query: 435 NSIQQAEMNAAKVALQKC 452
+ + AE NAA+ A++K
Sbjct: 237 KNKKSAEQNAAQKAMEKI 254
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ IT+ +LFH++PD +EG L RA IV LA A+ IGL F+L
Sbjct: 76 GDAVLSLITAEYLFHLYPDKDEGFLTKVRAKIVNRNSLADSAEEIGLVKFLLINQNLSNT 135
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
K +++ FEAL+GAL+LD G+D A +VF
Sbjct: 136 FSRGAKTVLSDAFEALVGALYLDQGLD-AGRVF 167
>gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
Length = 252
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLGDTVLQLITSD 282
K L+ LE G+ F+ R T S+ + G S +RLEFLGD VL L+ ++
Sbjct: 20 KPLEELESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRVLGLVVAE 79
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF----ANIINPKVDLKMKDRAD 338
L++ FP EG LSL +SLV+ T + + +++G+ F ++ K D RAD
Sbjct: 80 KLFDMFPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDLKKLKSDRTKSIRAD 139
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
L+E+ + A+Y+ +G+E F + RL + + D K+ LQ+ T
Sbjct: 140 LVESLIAAIYLGEGLETARDFIVRYWGGRLGKSVAAR--RDAKTALQEWAHTR------G 191
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
P P Y+++E GP + +TV V + A G S + AE AA L
Sbjct: 192 PVTPQYEIVERSGPDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVL 242
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDL- 151
G+ + + LF +FP +EG L+ ++V A +A +GL +F+ HG DL
Sbjct: 69 GDRVLGLVVAEKLFDMFPGADEGELSLRLNSLVSADTCAEIADELGLYEFVR--HGGDLK 126
Query: 152 -CHEVELKHAMANCFEALMGALFLDGGIDVADQVF----------SSVLYKDNEVRFKQW 200
K A+ E+L+ A++L G++ A S +D + ++W
Sbjct: 127 KLKSDRTKSIRADLVESLIAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQEW 186
Query: 201 MY-----YPQHPLQEQE-PDGD 216
+ PQ+ + E+ PD D
Sbjct: 187 AHTRGPVTPQYEIVERSGPDHD 208
>gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 231
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
K ++ L+ G+ F +RLL FT S N TLG+ ++LEFLGD VL+ SDYL
Sbjct: 5 KFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI-INPKVDLKMKDRA---DLL 340
Y HF +EG L+ LRS++V S V D G + + + K +A D+
Sbjct: 65 YRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKAGGRKRKALLEDVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQ--YFILNQEWN-DPKSKLQQ---CCLTLRTL 394
EAF GA+++D+G+EA E+F + +P + YF ++++ D + LQQ + R L
Sbjct: 125 EAFNGALFLDQGIEAVEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVL 184
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ E P + + V V ++LA G + ++AE +AA AL+
Sbjct: 185 N--ESQQPPH-------------FEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F S +L+ F + EG L R+ IV+ + + +A G + + G +
Sbjct: 52 GDAVLEFTVSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ K + + FEA GALFLD GI+ ++ +Y
Sbjct: 112 GGRKRKALLEDVFEAFNGALFLDQGIEAVEKFLRQTVY 149
>gi|163790810|ref|ZP_02185235.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
gi|159873878|gb|EDP67957.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
Length = 231
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L +L+ G++F + L FT S + NL L N+R+EFLGD VL+L S +LY
Sbjct: 6 LTHLKTKFGLVFQDLSYLEEAFTHSSYVNEHRNLKLKDNERIEFLGDAVLELTVSRFLYE 65
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEA 342
+P EG L+ LR+++V + S + F + + + + R DL E+
Sbjct: 66 LYPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERMNGRKRPALLCDLFES 125
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D+G++ F + FP+++ + D K+ LQ+ GE +I
Sbjct: 126 FVGALYLDQGLDGVLFFLEQTIFPKIKSGAFSHVM-DHKTNLQEFL-----QQKGEIEIE 179
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y +++ +GP + +++ V V + + L + G + + AE AA+ AL
Sbjct: 180 -YNLVDEIGPAHQKAFVVEVLAEGQLLGQGQGKTKKAAEQVAAENAL 225
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ ++P++ EG L RA IV + AK + F+ G +
Sbjct: 51 GDAVLELTVSRFLYELYPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERM 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ + + + FE+ +GAL+LD G+D
Sbjct: 111 NGRKRPALLCDLFESFVGALYLDQGLD 137
>gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246]
Length = 215
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 9/195 (4%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
N SN+RLEFLGD+VL L+T + LY FPE+ EG L+ ++S++V+ +T + +I
Sbjct: 14 ANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVSRKTCARFSQEIR 73
Query: 318 MP---FFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN 374
+ F +N ++ + A+ E+ + A+++D G +A F P + +
Sbjct: 74 LGDFLFLGRGVNSNGEMPLNILANAFESLVAAVFLDGGWDAARDFVLDFIDPEVDRVARD 133
Query: 375 QEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG 434
+ KS+LQ +T R D P Y +++ GP N++ + VA +ER A G
Sbjct: 134 AISANAKSQLQ--TVTQREYG----DTPRYFLLDEQGPDNNKCFKVAAQVHDERFPAAWG 187
Query: 435 NSIQQAEMNAAKVAL 449
++ ++AE+ AA AL
Sbjct: 188 HTKKEAELKAAMNAL 202
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ +T L+ FP+ +EG L ++A+V + A ++ I L DF+ G +
Sbjct: 28 GDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVSRKTCARFSQEIRLGDFLFLGRGVNSN 87
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E+ L + +AN FE+L+ A+FLDGG D A
Sbjct: 88 GEMPL-NILANAFESLVAAVFLDGGWDAA 115
>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 279
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
S +RLEFLGD++L + +D ++ FP+ EG L+ ++ SLV + S V N++G F
Sbjct: 46 SYERLEFLGDSILGAVVADAAFHRFPDLDEGGLTRIKVSLVAGSSLSQVANELGFADF-- 103
Query: 324 IINPKVDLKMKDRA------DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN--Q 375
II + + R ++ EA + A+Y+D GME F L Y ++ +
Sbjct: 104 IIFGQSEAGTGRRGLHSALENVYEAVVAALYLDGGMEVARSFIVQTL---LGYMSIDMAR 160
Query: 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGN 435
E +PKS LQ+ DG P YK+IE GP + R++ AVY + LA+ G
Sbjct: 161 EPENPKSALQEKLQE----DG---ITPTYKLIETQGPPHDRTFVAAVYAGLQALARGVGR 213
Query: 436 SIQQAEMNAAKVALQKCP 453
+ ++AE AA+ AL P
Sbjct: 214 TKKEAESKAAQTALSHLP 231
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + FH FPD++EGGL + ++V L+ +A +G DF+++
Sbjct: 54 GDSILGAVVADAAFHRFPDLDEGGLTRIKVSLVAGSSLSQVANELGFADFIIFGQSEAGT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
L A+ N +EA++ AL+LDGG++VA L + + P+ LQE+
Sbjct: 114 GRRGLHSALENVYEAVVAALYLDGGMEVARSFIVQTLLGYMSIDMAREPENPKSALQEK 172
>gi|426403897|ref|YP_007022868.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860565|gb|AFY01601.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 234
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYT-NLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
+ LE G F LL R T +S T+ N++LEFLGD VL L+ ++LY F
Sbjct: 7 KSLEERVGYHFKKPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKF 66
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFL 344
P EG LS R+S+VN S + ++G+ + + + L+ EA +
Sbjct: 67 PTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN-DPKSKLQQCCLTLRTLDGGEPDIPI 403
GA+Y+D G E F + F P ++++ D K++LQ+ + + P
Sbjct: 127 GALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQEL------VQKSSKETPR 180
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y+V+ GP + R + V V K + A+ G S + AE AAK AL+
Sbjct: 181 YEVLAEEGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + L+ FP EGGL+ RA+IV + L+ LA +GL M G L
Sbjct: 50 GDAVLDLVVGEFLYEKFPTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ FEA++GAL+LDGG +VA
Sbjct: 110 GGAQKPRLIASSFEAIVGALYLDGGFEVA 138
>gi|336053919|ref|YP_004562206.1| ribonuclease III [Lactobacillus kefiranofaciens ZW3]
gi|333957296|gb|AEG40104.1| Ribonuclease III [Lactobacillus kefiranofaciens ZW3]
Length = 228
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 21/234 (8%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYL 284
K L+ L+ + FN+ +LL FT S ++N + ++LEFLGD VL+L SDYL
Sbjct: 5 KFLKKLKEEYNIKFNNEKLLEEAFTHSSYSNEHSNDGIRDYEKLEFLGDAVLELAVSDYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLL 340
Y H+P+ +EG L+ LRS++V S + G ++ N + + R D+
Sbjct: 65 YRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQTEIHLGNGEEKAGARRRKTLLEDVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP---KSKLQQCCLTLRTLDGG 397
EAF GA+++D+GM A E F + +P I E++D K+ LQ+ G
Sbjct: 125 EAFNGALFLDQGMPAVEHFLHLTVYP----LIDKGEFDDSRDYKTDLQELLQQ-----DG 175
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
DI V E P++ + V + N+ + G++ + AE AAK ALQK
Sbjct: 176 PVDIEYSVVSESQLPSH---FVVELKINNKVQTQGEGHNKKAAEQQAAKSALQK 226
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P + EG L R+ IV+ + + A G + + +G +
Sbjct: 52 GDAVLELAVSDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQTEIHLGNGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
K + + FEA GALFLD G+ + +Y
Sbjct: 112 GARRRKTLLEDVFEAFNGALFLDQGMPAVEHFLHLTVY 149
>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|81617308|sp|Q6MLR5.1|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 234
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 12/227 (5%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYT-NLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
+ LE G F + LL R T +S T+ N++LEFLGD VL L+ ++LY F
Sbjct: 7 KSLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKF 66
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFL 344
P EG LS R+S+VN S + ++G+ + + + L+ EA +
Sbjct: 67 PTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN-DPKSKLQQCCLTLRTLDGGEPDIPI 403
GA+Y+D G E F + F P ++++ D K++LQ+ + + P
Sbjct: 127 GALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQEL------VQKSSKETPR 180
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y+V+ GP + R + V V K + A+ G S + AE AAK AL+
Sbjct: 181 YEVLAEEGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + L+ FP EGGL+ RA+IV + L+ LA +GL M G L
Sbjct: 50 GDAVLDLVVGEFLYEKFPTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ FEA++GAL+LDGG +VA
Sbjct: 110 GGAQKPRLIASSFEAIVGALYLDGGFEVA 138
>gi|377573013|ref|ZP_09802089.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377538287|dbj|GAB47254.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 295
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
PL +E GV+ + LL T RS Y N + +N+RLEFLGD+VL L+ ++
Sbjct: 16 PLADLASDIEKIIGVLLDEA-LLRHALTHRSFAYENGGVPNNERLEFLGDSVLGLVVTES 74
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
LY PE EG L+ LR+++VN R + V + + + + + +D+ AD
Sbjct: 75 LYGDHPEMAEGQLAKLRAAVVNMRALAEVARTLHVGSYLLLGRGEEATGGRDKASILADT 134
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA +G +Y+ +G++ F P L D K+ LQ+ + G
Sbjct: 135 MEALIGTIYLAEGLDKARMFVHHLIDPLLASSTRLGAGLDWKTSLQELAAS------GGH 188
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+P Y+V E GP + + +T +E L G S ++AE AA A
Sbjct: 189 GMPEYRVTEE-GPDHEKVFTAHAVVGDEDLGTGVGRSKKEAEQQAAHTA 236
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ P++ EG LA RAA+V + LA +A+ + + ++L G +
Sbjct: 63 GDSVLGLVVTESLYGDHPEMAEGQLAKLRAAVVNMRALAEVARTLHVGSYLLLGRGEEAT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ EAL+G ++L G+D A
Sbjct: 123 GGRDKASILADTMEALIGTIYLAEGLDKA 151
>gi|365157110|ref|ZP_09353391.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
gi|363625844|gb|EHL76855.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
Length = 243
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
N+RLEFLGD VL+L S+YL+N +P EG L+ LR+++V + N++ +
Sbjct: 53 DNERLEFLGDAVLELTVSNYLFNKYPFMSEGELTKLRAAVVCEPSLVGFSNELQFGQYIR 112
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + + R AD+ EAF+GA+Y+D+G+E QF + FP++ + D
Sbjct: 113 LGKGEELTGGRTRPALLADVFEAFIGALYLDQGLEVVVQFLEKIVFPKIDAGAFSHVM-D 171
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
K++LQ+ DG I Y++++ GP + R + V + L TG S ++
Sbjct: 172 FKTQLQEMV----QRDGN--GILTYRILQEKGPAHHREFVSEVALNGQVLGVGTGRSKKE 225
Query: 440 AEMNAAKVALQKC 452
AE AA+ AL K
Sbjct: 226 AEQRAAEQALSKL 238
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +P + EG L RAA+V L + + ++ G +L
Sbjct: 61 GDAVLELTVSNYLFNKYPFMSEGELTKLRAAVVCEPSLVGFSNELQFGQYIRLGKGEELT 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD G++V Q +++
Sbjct: 121 GGRTRPALLADVFEAFIGALYLDQGLEVVVQFLEKIVF 158
>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 23/227 (10%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F +LL + FT S Y N N+RLEFLGD VL+L S YL+ +P
Sbjct: 27 GITFTDEKLLIQAFTHSS--YVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMS 84
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR----ADLLEAFLG 345
EG L+ LR+++V + N++ F N++ +M ++R AD+ EAF+G
Sbjct: 85 EGELTKLRAAVVCEPSLVRFANELS---FGNLVLLGKGEEMTGGRERPALLADVFEAFIG 141
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D+G+E +F K +P++ + D KS+LQ+ G +I Y+
Sbjct: 142 ALYLDQGLETVWEFLKEIVYPKINEGAFSHVM-DYKSQLQELIQR-----DGSGNIE-YQ 194
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+++ GP ++R + V L +G S ++AE AA AL+K
Sbjct: 195 ILQEKGPAHNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEALKKL 241
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P + EG L RAA+V L A + + +L G ++
Sbjct: 64 GDAVLELTVSQYLFQKYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
E +A+ FEA +GAL+LD G++ + ++Y K NE F M Y LQE
Sbjct: 124 GGRERPALLADVFEAFIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQ-LQE 181
>gi|91794117|ref|YP_563768.1| ribonuclease III [Shewanella denitrificans OS217]
gi|123165871|sp|Q12KI1.1|RNC_SHEDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|91716119|gb|ABE56045.1| RNAse III [Shewanella denitrificans OS217]
Length = 226
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 16/230 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L L + G F + LL + T RS + N+RLEFLGD++L ++ SD LY
Sbjct: 4 VKNLARLSRTLGYEFTNQELLVQALTHRSAANKH-----NERLEFLGDSILSIVISDALY 58
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCND--IGMPFFANIINPKVDLKMKDR--ADLLE 341
+ FP+ EG LS +R++LV T +++ + +G F K ++ AD +E
Sbjct: 59 HQFPKATEGDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKSGGFRRESILADAVE 118
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y+D M+ACE + RL DPK+ LQ+ L G + +
Sbjct: 119 AIIGAVYLDANMQACETLLLSWYKVRLDEIKPGINQKDPKTILQEY------LQGYKKPL 172
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
P Y+V++ G + +++TV ++ + + G+S ++AE AA L+
Sbjct: 173 PDYQVVQVDGEAHDQTFTVECRIQDLDEVVTGVGSSRRKAEQLAAAQILE 222
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S L+H FP EG L+ RA +V+ + L +AK L D++ G
Sbjct: 45 GDSILSIVISDALYHQFPKATEGDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 187
+ +A+ EA++GA++LD + + + S
Sbjct: 105 GGFRRESILADAVEAIIGAVYLDANMQACETLLLS 139
>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 226
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 17/226 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ L+ S G F LL + T RS G + N+RLEFLGD L + + L+ F
Sbjct: 4 LESLQQSVGYQFREQSLLLQALTHRSAGARH-----NERLEFLGDAALNFVVAAKLFARF 58
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP---KVDLKMKD--RADLLEAF 343
P+ EG LS +R+ LV T + + I + + I+ P + +D RAD LEA
Sbjct: 59 PKVSEGDLSRMRARLVREETLAEIAGKIALA-DSLILGPGEIRSGGARRDSIRADALEAV 117
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA ++D G A E+ P + + +E DPK++LQ+ L G +P+
Sbjct: 118 IGAAFLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEF------LQGQGRPVPV 171
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y + G + R + +A S ++AE AA + L
Sbjct: 172 YTTVAEKGQAHERRFVARCSVPGAEATEAEDGSRRKAEQQAAALML 217
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + LF FP + EG L+ RA +V+ + LA +A +I L D ++ G
Sbjct: 42 GDAALNFVVAAKLFARFPKVSEGDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRS 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKDNEVRFKQW 200
A+ EA++GA FLDGG A+++ + ++ +D + R +++
Sbjct: 102 GGARRDSIRADALEAVIGAAFLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEF 161
Query: 201 MYYPQHPL 208
+ P+
Sbjct: 162 LQGQGRPV 169
>gi|403251460|ref|ZP_10917800.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
gi|402915220|gb|EJX36203.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
Length = 212
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
+L T RS Y + +N+RLEFLGD+VL LI ++ LY FP+ E LS LRS +V
Sbjct: 1 MLELALTHRSFSYEAGGIPTNERLEFLGDSVLGLIVTEELYKKFPDLDESRLSPLRSGVV 60
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N + + + +I + I + +D+ AD LEA +GA+Y+ G E +
Sbjct: 61 NMKALAQIAREIKLGSHLRIGKGEESTNGRDKNSILADSLEALVGAIYLQHGYEKTAEII 120
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
P L + D K+ LQ+ +L P P Y++ E GP + +S+
Sbjct: 121 LNWMKPSLNSVLTLGAALDAKTALQELAASLNL-----PS-PEYEISES-GPDHDKSFIA 173
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ER G S ++AE +AAK+A
Sbjct: 174 TALVGSERFETGQGKSKREAEQSAAKLA 201
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + L+ FPD++E L+ R+ +V + LA +A+ I L + G +
Sbjct: 28 GDSVLGLIVTEELYKKFPDLDESRLSPLRSGVVNMKALAQIAREIKLGSHLRIGKGEEST 87
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV--------FSSVLYKDNEVRFKQWMY-- 202
+ + +A+ EAL+GA++L G + ++ +SVL + K +
Sbjct: 88 NGRDKNSILADSLEALVGAIYLQHGYEKTAEIILNWMKPSLNSVLTLGAALDAKTALQEL 147
Query: 203 -------YPQHPLQEQEPDGDRQWV 220
P++ + E PD D+ ++
Sbjct: 148 AASLNLPSPEYEISESGPDHDKSFI 172
>gi|389573284|ref|ZP_10163359.1| ribonuclease III [Bacillus sp. M 2-6]
gi|388426981|gb|EIL84791.1| ribonuclease III [Bacillus sp. M 2-6]
Length = 247
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 21/246 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGD 273
D+Q +QS L+Q + + V F + +LL + FT S + N+RLEFLGD
Sbjct: 7 DKQ--KQSKKLEQFREFQQRISVHFKNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGD 64
Query: 274 TVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM 333
VL+L S +L+ +P EG L+ LR+++V + + +++ F +++ +M
Sbjct: 65 AVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEM 121
Query: 334 ---KDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+ R AD+ EAF+GA+Y+D+G+E E+F + +P++ + D KS+LQ+
Sbjct: 122 TGGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVM-DFKSQLQE 180
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
DG + Y+++ GP ++R + V + E L G S ++AE +AA+
Sbjct: 181 FV----QRDG--KGVLEYRILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQ 234
Query: 447 VALQKC 452
AL K
Sbjct: 235 EALAKL 240
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 63 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 201
+ +A+ FEA +GAL+LD G++ ++ + +Y K N+ F M
Sbjct: 123 GGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVM 172
>gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032]
gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032]
Length = 247
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 25/248 (10%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFL 271
D+Q +QS L+Q + + V F + +LL + FT S Y N N+RLEFL
Sbjct: 7 DKQ--KQSKKLEQFREFQQRISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFL 62
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD VL+L S +L+ +P EG L+ LR+++V + + +++ F +++
Sbjct: 63 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGE 119
Query: 332 KM---KDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKL 384
+M + R AD+ EAF+GA+Y+D+G+E E+F + +P++ + D KS+L
Sbjct: 120 EMTGGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVM-DFKSQL 178
Query: 385 QQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNA 444
Q+ DG + Y+++ GP ++R + V + E L G S ++AE +A
Sbjct: 179 QEFV----QRDG--KGVLEYRILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHA 232
Query: 445 AKVALQKC 452
A+ AL K
Sbjct: 233 AQEALAKL 240
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 63 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 201
+ +A+ FEA +GAL+LD G++ ++ + +Y K N+ F M
Sbjct: 123 GGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVM 172
>gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043]
gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043]
Length = 265
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 14/247 (5%)
Query: 214 DGDRQ--WVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
DGD V Q P+ L +LE G + LL R T RS Y N + +N+RLEFL
Sbjct: 7 DGDAGVVAVPQRPVDALLAHLEEVVGQEIDEP-LLLRSLTHRSFAYENGGVPNNERLEFL 65
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD+VL L+ +D LY P+ EG L+ LR+++VN R + V + + + +
Sbjct: 66 GDSVLGLVVTDTLYRSHPDLPEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEAT 125
Query: 332 KMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQC 387
+D+ AD +EA +G +Y+ ++ QF F L+ D K+ LQQ
Sbjct: 126 GGRDKASILADSMEALIGTVYLSTDIDLAAQFIHHHFDAILEEAATLGAGLDWKTSLQQV 185
Query: 388 CLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKV 447
+ P Y+V E GP + + + V E L + G S ++AE AA+
Sbjct: 186 AAAVGQ------GAPEYRVAEQ-GPDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQE 238
Query: 448 ALQKCPS 454
A Q S
Sbjct: 239 AWQSLES 245
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V + LA +A+ L +++ G +
Sbjct: 66 GDSVLGLVVTDTLYRSHPDLPEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEAT 125
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLYK--------DNEVRFKQ- 199
+ +A+ EAL+G ++L ID+A Q F ++L + D + +Q
Sbjct: 126 GGRDKASILADSMEALIGTVYLSTDIDLAAQFIHHHFDAILEEAATLGAGLDWKTSLQQV 185
Query: 200 ----WMYYPQHPLQEQEPDGDRQW 219
P++ + EQ PD ++++
Sbjct: 186 AAAVGQGAPEYRVAEQGPDHEKEF 209
>gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
Length = 253
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 109/194 (56%), Gaps = 15/194 (7%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
N+RLEFLGD VL+L S YL+ ++ EG ++ LR+++V + + + ++ + F
Sbjct: 66 DNERLEFLGDAVLELAISQYLFKNYANMSEGEMTKLRAAIVCEPSLAKIADE--LKFGER 123
Query: 324 IINPKVDLKMKDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW 377
++ K + R AD+ E+F+GA+Y+D GM+A F KV +P++ + +
Sbjct: 124 VLLGKGEEMTGGRKRPALLADVFESFVGALYLDLGMDAVYDFLKVNVYPKIADGAFS-DM 182
Query: 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
D KS+LQ+ L R G+ I YK+++ GP ++R + V+ +N+ L G S
Sbjct: 183 MDYKSQLQE--LVQRE---GQGQIQ-YKIVQERGPAHAREFVSEVWLENKLLGIGAGRSK 236
Query: 438 QQAEMNAAKVALQK 451
++AE AA+ AL+K
Sbjct: 237 KEAEQMAAQKALEK 250
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF + ++ EG + RAAIV LA +A + + +L G ++
Sbjct: 74 GDAVLELAISQYLFKNYANMSEGEMTKLRAAIVCEPSLAKIADELKFGERVLLGKGEEMT 133
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-------------VADQVFSSVL 189
+ +A+ FE+ +GAL+LD G+D +AD FS ++
Sbjct: 134 GGRKRPALLADVFESFVGALYLDLGMDAVYDFLKVNVYPKIADGAFSDMM 183
>gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
Length = 231
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 27/236 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
K ++ L+ G+ F +RLL FT S N T G+ ++LEFLGD VL+ SDYL
Sbjct: 5 KFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTVSDYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI-INPKVDLKMKDRA---DLL 340
Y HF +EG L+ LRS++V S V D G N+ + + K +A D+
Sbjct: 65 YRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQ--YFILNQEWN-DPKSKLQQ---CCLTLRTL 394
EAF GA+++D+G+EA E+F +P + YF ++++ D + LQQ + R L
Sbjct: 125 EAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVL 184
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ E P + + V V ++LA G + ++AE +AA AL+
Sbjct: 185 N--ESQQPPH-------------FEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F S +L+ F + EG L R+ IV+ + + +A G ++ + G +
Sbjct: 52 GDAVLEFTVSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ K + + FEA GALFLD GI+ ++ S +Y
Sbjct: 112 GGRKRKALLEDVFEAFNGALFLDQGIEAVEKFLSQTVY 149
>gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521]
gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521]
gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 232
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 10/227 (4%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ +E + GV FN+ LL T S N+RLEFLGD VLQL ++YL+N+F
Sbjct: 6 LKEIEENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEYLFNNF 65
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
EG L+ RS +V + + + + + + + ++R AD +EA +
Sbjct: 66 KSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELTGGRERISIQADAVEAVI 125
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
A+Y+DKG+ F + F ++ I N+ D K+KLQ+ GE I Y
Sbjct: 126 AAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFKTKLQEFLQK-----DGEVSIH-Y 179
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
++I+H GP + R + V +N + + G S ++AE NAAK AL K
Sbjct: 180 ELIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQNAAKQALMK 226
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + +LF+ F EG L R+ IV L +AK++ L +++ + G +L
Sbjct: 49 GDAVLQLCITEYLFNNFKSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
E A+ EA++ A++LD GI
Sbjct: 109 GGRERISIQADAVEAVIAAVYLDKGI 134
>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
Length = 223
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 14/226 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L++ E + G F LL T +S N+RLEFLGD VL LI ++LYN F
Sbjct: 4 LKHFEKTLGYHFKAQNLLKEALTHKSAKKGT----HNERLEFLGDAVLDLIIGEFLYNKF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFL 344
P EG LS +R+S+VN + + + +IG F + + + + KD ++ EA +
Sbjct: 60 PNSREGELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y++ G++ LN + D K+ LQ+ L GE P Y
Sbjct: 120 GAIYLESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQE----LTQAKFGE--TPEY 173
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+++ GP +++++ + V + + AKA+G S ++A+ AK+A++
Sbjct: 174 VLLDSSGPDHNKNFLIGVKIQGKEFAKASGKSKKEAQQICAKIAIE 219
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 53/85 (62%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L++ FP+ EG L+ RA++V + A +A+ + + +++ ++ + + + ++N
Sbjct: 55 LYNKFPNSREGELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNA 114
Query: 165 FEALMGALFLDGGIDVADQVFSSVL 189
FEA++GA++L+ G+D+A + ++L
Sbjct: 115 FEAVIGAIYLESGLDIARNLMHNLL 139
>gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942]
gi|419823905|ref|ZP_14347438.1| ribonuclease III [Bacillus atrophaeus C89]
gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942]
gi|388471942|gb|EIM08732.1| ribonuclease III [Bacillus atrophaeus C89]
Length = 249
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 23/237 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 QFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E E F KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQEFV----QR 186
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
DG YK+ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 DG--KGTLEYKIQNEKGPAHNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ FEA +GAL+LD G++
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLE 151
>gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 244
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F I LL T S + + N+RLEFLGD VL+L TS L+ + EG L
Sbjct: 18 GYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRAMKDMDEGGL 77
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--------ADLLEAFLGAMY 348
+ LR+ LV +G+ + I+ L+ K AD +EA GA+Y
Sbjct: 78 TRLRARLVRKEALLTWAEALGL---SGILRVNRGLRKKGEGCDLSSMHADAIEAIFGAVY 134
Query: 349 IDKGMEACEQFCKV---CFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
+D G + E F + Y DPKS+LQQ L ++ GEP +P Y+
Sbjct: 135 MDGGYDMAESVVNRYLDFLFEKGDYIQDGNSSIDPKSELQQ-ILQIK----GEP-LPEYR 188
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
++ GP +S S+ V +Y L+ G SI++AE+ AA L S+
Sbjct: 189 IMSREGPPHSPSFEVELYVSGVLLSSGRGRSIKEAEVQAALDGLSLVRSVA 239
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + TS LF D++EGGL RA +V+ + L A+ +GL + G
Sbjct: 53 GDAVLELATSTRLFRAMKDMDEGGLTRLRARLVRKEALLTWAEALGLSGILRVNRGLRKK 112
Query: 153 HE-VELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +L A+ EA+ GA+++DGG D+A+ V + L
Sbjct: 113 GEGCDLSSMHADAIEAIFGAVYMDGGYDMAESVVNRYL 150
>gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 242
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 11/227 (4%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGY--TNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
LQ L+ + F I LL F RS ++ L N+RLEFLGD+VL ++ ++YLY
Sbjct: 17 LQELQSITDTSFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEYLYK 76
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDRADLLEAF 343
P+ EG L+ L+S +V+ + + P F K + + +AD EAF
Sbjct: 77 SLPKGKEGILAKLKSKMVSAPAIAKLARFYRFPDFLLLGKGEKEKGEANLNLQADCFEAF 136
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+Y+D+G+ +C F F + +E D K+ LQ+ C +P
Sbjct: 137 LGALYLDQGLNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEYC------QKKWKKLPE 190
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y +++ GP + + ++V+V +N + G + ++AE AAK AL+
Sbjct: 191 YILLKEEGPDHDKDFSVSVSCENYFQSNGDGKNKRRAEQMAAKAALR 237
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + +L+ P +EG LA ++ +V +A LA+ DF+L G
Sbjct: 62 GDSVLGILAAEYLYKSLPKGKEGILAKLKSKMVSAPAIAKLARFYRFPDFLLLGKGEKEK 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGID------------VADQVFSSVLYKD-----NEV 195
E L + A+CFEA +GAL+LD G++ + V S+ KD E
Sbjct: 122 GEANL-NLQADCFEAFLGALYLDQGLNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEY 180
Query: 196 RFKQWMYYPQHP-LQEQEPDGDRQW 219
K+W P++ L+E+ PD D+ +
Sbjct: 181 CQKKWKKLPEYILLKEEGPDHDKDF 205
>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
gi|81666107|sp|Q7VIA9.1|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
Length = 240
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 126/251 (50%), Gaps = 22/251 (8%)
Query: 220 VEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLI 279
+ +S L K Q LE G +F + +LL T +S +N+RLEFLGD VL L+
Sbjct: 1 MSKSILPKSPQLLEKKLGYVFQNQQLLLEALTHKSCKKQY----NNERLEFLGDAVLDLL 56
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADL 339
+YL+ FP EG LS LR+ +VN + + + + + I + + + +A +
Sbjct: 57 VGEYLFKKFPLAKEGELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASI 116
Query: 340 L----EAFLGAMYIDKGMEACEQFCKVCFFPRLQY----FILNQEWNDPKSKLQQCCLTL 391
L EA +GA+Y++ + + + + L+Y L+ + D K+ LQ+
Sbjct: 117 LSNAFEALIGAIYLESSL----TYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAF 172
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GE IP Y +I GP + +S+ +A+ + + A+A+GNS ++A+ +A++A +K
Sbjct: 173 Y----GE--IPTYTLISESGPDHKKSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKK 226
Query: 452 CPSICPQLDHQ 462
S + H+
Sbjct: 227 LYSKMNKTHHK 237
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LF FP +EG L+ RA IV + LA+ + L ++ + +
Sbjct: 49 GDAVLDLLVGEYLFKKFPLAKEGELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENN 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + ++N FEAL+GA++L+ + + +L
Sbjct: 109 NGRQKASILSNAFEALIGAIYLESSLTYVQSIIYDLL 145
>gi|388258662|ref|ZP_10135837.1| ribonuclease III [Cellvibrio sp. BR]
gi|387937421|gb|EIK43977.1| ribonuclease III [Cellvibrio sp. BR]
Length = 226
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 20/227 (8%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
Q LE G F R L T RS G TN N+RLEFLGD++L I + L+ P
Sbjct: 7 QRLEQRLGYSFKDQRQLQLALTHRSHGATN-----NERLEFLGDSILNFIIGEALFTRLP 61
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLG 345
E EG LS LRS +V T +++ ++G K K +D AD +EA +G
Sbjct: 62 EAREGQLSRLRSQIVKGDTLALLAREFELGDCLILGEGELKSGGKSRDSILADSVEAIIG 121
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y++ G++ C + F PRL N D KS+LQ+ + R +P +P Y
Sbjct: 122 AIYLESGLDLCRERVLTWFAPRLNELSANTSAKDSKSRLQEYLQSQR-----QP-LPEYV 175
Query: 406 VIEHVGPTNSRSYTV---AVYFKNERLAKATGNSIQQAEMNAAKVAL 449
V E G +++ +T+ V K +A ++ ++AE AA + L
Sbjct: 176 VAEVGGEGHAQVFTIECRVVLAKQP--TRAIASNRREAEKQAAALML 220
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ FI LF P+ EG L+ R+ IV+ LA LA+ L D ++ G
Sbjct: 44 GDSILNFIIGEALFTRLPEAREGQLSRLRSQIVKGDTLALLAREFELGDCLILGEGELKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+A+ EA++GA++L+ G+D+ +++ ++ KD++ R +++
Sbjct: 104 GGKSRDSILADSVEAIIGAIYLESGLDLCRERVLTWFAPRLNELSANTSAKDSKSRLQEY 163
Query: 201 MYYPQHPLQE 210
+ + PL E
Sbjct: 164 LQSQRQPLPE 173
>gi|404497172|ref|YP_006721278.1| ribonuclease III [Geobacter metallireducens GS-15]
gi|418066666|ref|ZP_12704026.1| ribonuclease III [Geobacter metallireducens RCH3]
gi|90101627|sp|Q39T82.1|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|78194775|gb|ABB32542.1| ribonuclease III [Geobacter metallireducens GS-15]
gi|373560159|gb|EHP86431.1| ribonuclease III [Geobacter metallireducens RCH3]
Length = 246
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 17/246 (6%)
Query: 215 GDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS-----NQRLE 269
G+R ++S + + LE G F + + LA T RS + N G N+RLE
Sbjct: 2 GERGVEDKSAVQESATELEAGIGYRFVNRQFLAEALTHRS--WVNERRGEEGIRDNERLE 59
Query: 270 FLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV 329
FLGD VL L+ L+ FP+ EG L+ +++SLV T + + + G+ + +
Sbjct: 60 FLGDAVLGLLVGKMLFARFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEE 119
Query: 330 DLKMKDRADLL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
++R LL EA L A+Y+D G+ E+ + F P L D K++ Q
Sbjct: 120 RSGGRERRSLLANTYEALLAAVYLDGGLGPVERIVEQDFSPLLAGIASGATGRDFKTEFQ 179
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ T P Y++I GP + R +TV +R+ + G S ++AE AA
Sbjct: 180 EMVQTRFGT------APTYELIATDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAA 233
Query: 446 KVALQK 451
+ L +
Sbjct: 234 RQVLAR 239
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF FP EG LA +A++V + LA LA GL +L G + E + +AN
Sbjct: 74 LFARFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEERSGGRERRSLLANT 133
Query: 165 FEALMGALFLDGGID----VADQVFSSVL 189
+EAL+ A++LDGG+ + +Q FS +L
Sbjct: 134 YEALLAAVYLDGGLGPVERIVEQDFSPLL 162
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
GVI + LL T RS Y N L N+RLEFLGD VL L+ +D+LYN P+ EG L
Sbjct: 6 GVILD-PELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLPEGQL 64
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR----ADLLEAFLGAMYI 349
+ LR+S+VN + V +G + ++ +D+ AD LEA +GA+Y+
Sbjct: 65 AKLRASVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYL 124
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
+ G+E + F L L D K+ LQ+ + +P YKV E
Sbjct: 125 EHGIEIARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASAGL------GVPEYKV-ED 177
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKS 469
GP + + +T V L G++ ++AE AA+ A + S+ +++ QK+ +S
Sbjct: 178 TGPDHRKEFTATVLVAGRPLGHGAGSTKKEAEQKAAETAWR---SLSAEVEAQKKAEPES 234
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK---RIGLEDFMLYAHGS 149
G+ + + HL++ PD+ EG LA RA++V LA +A+ GL +L G
Sbjct: 40 GDAVLGLVVTDHLYNTHPDLPEGQLAKLRASVVNMHALARVARGLGEGGLGAHLLLGKGE 99
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+L + +A+ EA++GA++L+ GI++A ++
Sbjct: 100 ELTGGRDKASILADGLEAVIGAVYLEHGIEIARKLV 135
>gi|375362237|ref|YP_005130276.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731737|ref|ZP_16170860.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347036|ref|YP_007445667.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|371568231|emb|CCF05081.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407073950|gb|EKE46940.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850794|gb|AGF27786.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 249
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 23/238 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 QFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E +QF K FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVQQFLKEYVFPKINDGAFSHVM-DFKSQLQEFVQR---- 186
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
G+ + YK++ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 -DGKGSLE-YKILNEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYY 203
+ +A+ FEA +GAL+LD G++ Q ++ K N+ F M +
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKEYVFPKINDGAFSHVMDF 176
>gi|427394181|ref|ZP_18887683.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
gi|425730169|gb|EKU93012.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
Length = 235
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 11/190 (5%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
+RLEFLGD V++L TS YLY+ FPE EG L+ +R++ V + + + + +P F +
Sbjct: 45 ERLEFLGDAVVELCTSAYLYDKFPELPEGQLTRIRAASVRAESLAQLARECDLPQFILLG 104
Query: 326 NPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++ ++R D+ EAF GA++ D+G E QF FP++ + + D K
Sbjct: 105 KGEEMMQGRERPALLCDVFEAFTGAIFQDQGYEQARQFLSQVLFPKIDHDDFSHGM-DFK 163
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
+ LQ+ + GE I Y V++ GP ++R++ V V + + GNS ++A+
Sbjct: 164 TALQELM-----QENGEVKID-YDVVDTKGPDHNRTFYVEVKIEGDSYGVGQGNSKKRAQ 217
Query: 442 MNAAKVALQK 451
AAK AL++
Sbjct: 218 QQAAKKALEQ 227
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + TS +L+ FP++ EG L RAA V+ + LA LA+ L F+L G ++
Sbjct: 51 GDAVVELCTSAYLYDKFPELPEGQLTRIRAASVRAESLAQLARECDLPQFILLGKGEEMM 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E + + FEA GA+F D G + A Q S VL+
Sbjct: 111 QGRERPALLCDVFEAFTGAIFQDQGYEQARQFLSQVLF 148
>gi|336113778|ref|YP_004568545.1| ribonuclease III [Bacillus coagulans 2-6]
gi|335367208|gb|AEH53159.1| ribonuclease III [Bacillus coagulans 2-6]
Length = 246
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 21/223 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F LL + FT S Y N N+RLEFLGD VL+L S YL+ FP +
Sbjct: 24 GIHFQDGNLLKQAFTHSS--YVNEHPEKRRHDNERLEFLGDAVLELTVSHYLFKRFPSMN 81
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG ++ LR+S+V + + N+ + F I+ K + R AD+ EAF+GA
Sbjct: 82 EGEMTKLRASVVCEPSLVIFANE--LHFGEYILLGKGEEMTGGRTRPALLADVFEAFIGA 139
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+DKG++A + FP++ + + D KSKLQ+ RT + Y +
Sbjct: 140 LYLDKGLKAVVSLLEKVVFPKIDEGLFSS-TADYKSKLQEYVQK-RT-----SGVLEYTI 192
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
++ GP + + + V ++ L G S ++AE AA+ AL
Sbjct: 193 LDERGPAHDKEFVSRVSLNSKALGTGKGRSKKEAEQQAAQTAL 235
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG + RA++V L A + +++L G ++
Sbjct: 61 GDAVLELTVSHYLFKRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMT 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD G+ + V++
Sbjct: 121 GGRTRPALLADVFEAFIGALYLDKGLKAVVSLLEKVVF 158
>gi|334135564|ref|ZP_08509048.1| ribonuclease III [Paenibacillus sp. HGF7]
gi|333606900|gb|EGL18230.1| ribonuclease III [Paenibacillus sp. HGF7]
Length = 233
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 29/229 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F + LL + FT S Y N N+RLEFLGD VL+L S+YLY +P E
Sbjct: 14 IRFQDLDLLRQAFTHSS--YVNEHRMANYQDNERLEFLGDAVLELTVSEYLYFKYPHRTE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G L+ LR+S+V + + + + + + R AD+ E+F+GA+Y+
Sbjct: 72 GELTKLRASIVCEPSLVNFAEKLNFGSYVQLGKGEEMTGGRSRPALLADVFESFIGALYL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWN----DPKSKLQQCCL--TLRTLDGGEPDIPI 403
D+G+EA + F + FP ++ E D K++LQ+ + L+
Sbjct: 132 DQGLEAVKLFLQQHVFP-----YVSAEGKLLVIDYKTQLQEHTQHHNMGALE-------- 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
Y+++E GP + R + VY ++L K G S ++AE AA AL K
Sbjct: 179 YRIVEERGPAHEREFVAEVYMDAKQLGKGAGRSKKEAEQQAASQALTKL 227
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P EG L RA+IV L + A+++ ++ G ++
Sbjct: 50 GDAVLELTVSEYLYFKYPHRTEGELTKLRASIVCEPSLVNFAEKLNFGSYVQLGKGEEMT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+A+ FE+ +GAL+LD G++
Sbjct: 110 GGRSRPALLADVFESFIGALYLDQGLEA 137
>gi|387772294|ref|ZP_10128246.1| ribonuclease III [Haemophilus parahaemolyticus HK385]
gi|386907029|gb|EIJ71746.1| ribonuclease III [Haemophilus parahaemolyticus HK385]
Length = 222
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 16/227 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
QL+ L+ G F + L + T RS N N+RLEFLGD++L L++
Sbjct: 2 QLERLQKKLGYQFETLDYLTQALTHRSAASKN-----NERLEFLGDSILNFTIGKALFDK 56
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCN--DIG--MPFFANIINPKVDLKMKDRADLLEAF 343
FP+ +EG LS +R++LV +T +++ D+G M A + + AD +EA
Sbjct: 57 FPKANEGELSRMRATLVREQTLAIIARQFDLGDYMKLGAGELKSGGYRRESILADCVEAI 116
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ A+Y+DKGM+ Q + L DPK++LQ+ L G + +P
Sbjct: 117 IAAIYLDKGMDQAMQKVNDWYVTFLAEISPGDAQKDPKTRLQEF------LQGRKLPLPE 170
Query: 404 YKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
Y VI+ G +++++ V KN + + G S ++AE NAA+ L
Sbjct: 171 YDVIDIKGEAHNQTFKVTCKVKNVDEVFTGIGTSRRKAEQNAAEKVL 217
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F LF FP EG L+ RA +V+ Q LA +A++ L D+M G
Sbjct: 41 GDSILNFTIGKALFDKFPKANEGELSRMRATLVREQTLAIIARQFDLGDYMKLGAGELKS 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKDNEVRFKQW 200
+ +A+C EA++ A++LD G+D A Q + KD + R +++
Sbjct: 101 GGYRRESILADCVEAIIAAIYLDKGMDQAMQKVNDWYVTFLAEISPGDAQKDPKTRLQEF 160
Query: 201 MYYPQHPLQE 210
+ + PL E
Sbjct: 161 LQGRKLPLPE 170
>gi|167041438|gb|ABZ06190.1| putative RNase3 domain protein [uncultured marine microorganism
HF4000_006O13]
gi|167041995|gb|ABZ06732.1| putative RNase3 domain protein [uncultured marine microorganism
HF4000_141E02]
Length = 224
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Query: 242 HIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRS 301
H R + ++ + + ++ +N+RLEFLGD L L+ S+ LY + E EG+LS +RS
Sbjct: 13 HYRFKDDILLQTALTHRSHSVDNNERLEFLGDAALDLVISELLYQSYSEQTEGYLSRMRS 72
Query: 302 SLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACE 357
SLV T + + ++ + + + + ++R +D LEA +GA+++D G A +
Sbjct: 73 SLVKGNTLAELAKELDVGGYLILGKGENTSGGRERLSLLSDTLEAMIGAIFLDGGYVAVK 132
Query: 358 QFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F R+Q E D KS LQ+ L G + +P+Y ++ VG N ++
Sbjct: 133 NVIIKIFDSRIQALDPKSEHKDHKSVLQE------KLQGVKQGLPVYSLVRSVGDHN-KT 185
Query: 418 YTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+ V K+ E + +A+G +++ AE AA ALQ
Sbjct: 186 FVVECSIKSGEIVTQASGKTLRVAEQKAASKALQ 219
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ + + EG L+ R+++V+ LA LAK + + +++ G +
Sbjct: 43 GDAALDLVISELLYQSYSEQTEGYLSRMRSSLVKGNTLAELAKELDVGGYLILGKGENTS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
E +++ EA++GA+FLDGG
Sbjct: 103 GGRERLSLLSDTLEAMIGAIFLDGG 127
>gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
gi|90101616|sp|Q3AC58.1|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
Length = 235
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNHFP 289
LE G FN+ +L T S + + G N+RLEFLGD VL+L SDYL+ FP
Sbjct: 9 LEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFP 68
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI----INPKVDLKMKDRADLLEAFLG 345
+ EG L+ LRS LV + + I + F + + +M + A+ +EA +G
Sbjct: 69 QKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLANAVEAVIG 128
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y D G+EA F + +L+ L Q D K+ LQ+ L + ++ Y+
Sbjct: 129 AVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQEL------LQKEKNNVLRYE 182
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
++ GP + + +T V ++ +A G S ++AE AAK AL+
Sbjct: 183 ILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALE 227
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP EG L R+ +V + L LA +I L+ F+ G
Sbjct: 51 GDAVLELFISDYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +AN EA++GA++ D GI+ A
Sbjct: 111 GGNQRMSNLANAVEAVIGAVYFDCGIEAA 139
>gi|375094027|ref|ZP_09740292.1| ribonuclease III [Saccharomonospora marina XMU15]
gi|374654760|gb|EHR49593.1| ribonuclease III [Saccharomonospora marina XMU15]
Length = 243
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 22/233 (9%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
+PLL+ L GV + LL T RS Y N L N+RLEFLGD VL L+ +D
Sbjct: 14 APLLEAL-------GVELDD-ELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTD 65
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR--- 336
YLY PE EG L+ LR+S+VN + V D+G + ++ +D+
Sbjct: 66 YLYRKHPELPEGQLAKLRASVVNMHALASVARDLGDGGLGAHLLLGKGEELTGGRDKASI 125
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
AD LEA +GA Y+ G+E + F L L D K+ LQ+ +
Sbjct: 126 LADGLEAVIGATYLAHGIETARELVHRLFDGLLAEAPLRGAGLDWKTSLQELTASAGL-- 183
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+P YKV E GP + + ++ V+ L G + ++AE AA+ A
Sbjct: 184 ----GVPEYKV-EDTGPDHRKEFSAVVFVGGRDLGHGEGTTKKEAEQKAAEFA 231
>gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537]
Length = 236
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 12/226 (5%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
QYL + + F++ LL T R+ + + T QRLEFLGD V+Q ++YL+
Sbjct: 8 QYLNQTFAISFDNETLLLEALTQRNYLNEHPDETGRDYQRLEFLGDAVMQETVAEYLFRR 67
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAF 343
+P+ HEG L+ +R ++V R+ + + + + + +DR LL EAF
Sbjct: 68 YPKWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMNGARDRDSLLEDIWEAF 127
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y+D+G + ++F F + + + D KS+LQ+ G DI
Sbjct: 128 IGALYLDQGADTVKRFLDATLFAAVDTDFFDH-FIDFKSRLQEKLQA-----NGPVDIDY 181
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+ E + NS + +V + LA+ TG SI+ AE AA+ AL
Sbjct: 182 NTISETILADNSTCFEASVSLDDRELARGTGKSIKDAEKAAARKAL 227
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + +LF +P EG L R A+VQ + AH A+++ L + + G ++
Sbjct: 52 GDAVMQETVAEYLFRRYPKWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMN 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + +EA +GAL+LD G D + + L+
Sbjct: 112 GARDRDSLLEDIWEAFIGALYLDQGADTVKRFLDATLF 149
>gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4]
Length = 249
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 21/232 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+++ +L + FT S Y N N+RLEFLGD VL+L S +LYN +
Sbjct: 27 GISFSNVSILKQAFTHSS--YVNEHRKKPFEDNERLEFLGDAVLELTVSHFLYNKYATMS 84
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG L+ LR+++V + N+ + F + ++ K + R AD+ EAF+GA
Sbjct: 85 EGELTKLRAAIVCEPSLVKFANE--LDFGSVVLLGKGEELTGGRTRPALLADVFEAFIGA 142
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D+G+++ E+F + FP++ + D KS+LQ+ ++ G+ + Y++
Sbjct: 143 LYLDQGLQSVEKFLEQIVFPKINDGAFSHVM-DYKSQLQEL---IQREGSGQLE---YRI 195
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQ 458
+ GP +S+ + V + + G S ++AE +AA+ AL+ S+ Q
Sbjct: 196 LLEKGPAHSKEFVSQVLLNSMEIGVGNGRSKKEAEQHAAQKALEHLKSMNEQ 247
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L++ + + EG L RAAIV L A + +L G +L
Sbjct: 64 GDAVLELTVSHFLYNKYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE- 210
+A+ FEA +GAL+LD G+ ++ +++ K N+ F M Y LQE
Sbjct: 124 GGRTRPALLADVFEAFIGALYLDQGLQSVEKFLEQIVFPKINDGAFSHVMDYKSQ-LQEL 182
Query: 211 --QEPDGDRQW---VEQSPLLKQLQYLEYSSGVIFNHIRL 245
+E G ++ +E+ P + E+ S V+ N + +
Sbjct: 183 IQREGSGQLEYRILLEKGPAHSK----EFVSQVLLNSMEI 218
>gi|441504428|ref|ZP_20986422.1| Ribonuclease III [Photobacterium sp. AK15]
gi|441427895|gb|ELR65363.1| Ribonuclease III [Photobacterium sp. AK15]
Length = 224
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 16/228 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
L+ G FN+I L+ T RS T+ N+RLEFLGD++L + +D LY+ FP
Sbjct: 8 LQRKLGYQFNNIDLMTLALTHRSANGTH-----NERLEFLGDSILSFVIADDLYHRFPAV 62
Query: 292 HEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAM 347
EG +S +R++LV +T + + D+G K +D AD +EA +GA+
Sbjct: 63 DEGDMSRMRATLVRGKTLAELGREFDLGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D +E + + RL+ DPK++LQ+C L G +P Y V
Sbjct: 123 YLDSDIETVRKIVLGWYQTRLETIKPGINQKDPKTRLQEC------LQGRRLPLPAYTVT 176
Query: 408 EHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQKCPS 454
+ G +++ +TV ++ G S ++AE AA+VAL++ S
Sbjct: 177 KVQGEAHNQEFTVQCEVAGLDKPVIGKGGSRRKAEQAAAEVALKQLES 224
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+H FP ++EG ++ RA +V+ + LA L + L D +L G
Sbjct: 43 GDSILSFVIADDLYHRFPAVDEGDMSRMRATLVRGKTLAELGREFDLGDHLLLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+A+C EA++GA++LD I+ ++
Sbjct: 103 GGFRRDSILADCVEAIIGAIYLDSDIETVRKI 134
>gi|335040133|ref|ZP_08533269.1| Ribonuclease 3 [Caldalkalibacillus thermarum TA2.A1]
gi|334179958|gb|EGL82587.1| Ribonuclease 3 [Caldalkalibacillus thermarum TA2.A1]
Length = 234
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 14/238 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+Q + + GV F LL + FT S + + L N+RLEFLGD VL+L S YL
Sbjct: 5 EQFKAFQNRIGVSFKDETLLIQAFTHSSYVNEHKDKALKDNERLEFLGDAVLELTVSQYL 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y HF EG ++ LR+++V + +++ + + ++R AD+
Sbjct: 65 YKHFQTMSEGEMTKLRAAIVCEPSLVKFAHELEFGKLIRLGKGEEIAGGRERPALLADVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EAF+GA+Y+D+G+EA ++F +P+++ ++ D KS+LQ+ ++ + GE
Sbjct: 125 EAFIGALYLDQGLEAVDRFLATYVYPKIETGAFSK-VVDYKSQLQEY---VQHDNLGE-- 178
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQ 458
Y+++ GP ++R + VY + L TG S ++AE AA AL+K +C Q
Sbjct: 179 -LTYQIVSEKGPAHNREFVAKVYLSGKDLGMGTGRSKKEAEQRAAAQALKKL-GVCLQ 234
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ F + EG + RAAIV L A + + G ++
Sbjct: 52 GDAVLELTVSQYLYKHFQTMSEGEMTKLRAAIVCEPSLVKFAHELEFGKLIRLGKGEEIA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE-------VRFK-QWMYYP 204
E +A+ FEA +GAL+LD G++ D+ ++ +Y E V +K Q Y
Sbjct: 112 GGRERPALLADVFEAFIGALYLDQGLEAVDRFLATYVYPKIETGAFSKVVDYKSQLQEYV 171
Query: 205 QHP---------LQEQEPDGDRQWV 220
QH + E+ P +R++V
Sbjct: 172 QHDNLGELTYQIVSEKGPAHNREFV 196
>gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
Length = 249
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 RFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E E F KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQEYV----QR 186
Query: 395 DG-GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
DG G + YK+ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 DGKGSLE---YKITNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 201
+ +A+ FEA +GAL+LD G++ + ++ K N+ F M
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM 174
>gi|94502127|ref|ZP_01308628.1| ribonuclease III [Bermanella marisrubri]
gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65]
Length = 226
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 24/234 (10%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
+PL+K Q + Y+ FN I T RS G N N+RLEFLGD+++ + ++
Sbjct: 3 NPLIKLSQRIGYT----FNDISFFELALTHRSKGGKN-----NERLEFLGDSIVNFVVAE 53
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
L+ FP+ EG LS LR+ LV T + + D + F + + ++ +R AD
Sbjct: 54 ALFEKFPQAKEGKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKSGGFNRESILAD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA +GA+Y+D G++ + + RL L+ D K++LQ+ L +
Sbjct: 114 AVEAIIGAIYLDSGLDTVRERILTWYGKRLDDLQLDDVVKDAKTRLQEH------LQKNQ 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT---GNSIQQAEMNAAKVAL 449
+P Y+V+E G + +++ V+ + E L + T G+S + AE +AA+ AL
Sbjct: 168 SRLPKYEVMEITGQAHDQNFKVSCWV--ETLPEVTIGLGSSRRLAEQSAAQKAL 219
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + LF FP +EG L+ RA +V+ LA LA+ L +F+L G
Sbjct: 43 GDSIVNFVVAEALFEKFPQAKEGKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ EA++GA++LD G+D
Sbjct: 103 GGFNRESILADAVEAIIGAIYLDSGLDT 130
>gi|384208374|ref|YP_005594094.1| ribonuclease III [Brachyspira intermedia PWS/A]
gi|343386024|gb|AEM21514.1| ribonuclease III [Brachyspira intermedia PWS/A]
Length = 244
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
NQRLEFLGD+VL LI SDYL+ + EG LS ++SSLV+ ++ + + ++ + F +
Sbjct: 44 NQRLEFLGDSVLSLIISDYLFKKYNSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLL 103
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ + + R DL EA +GA+Y+D G+ + +F + RL+ + D
Sbjct: 104 GHGEEASGGRYRDNMLEDLFEAIVGAIYLDSGITSASKFVMRAYRERLKNLDIENFDKDY 163
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K+ Q+ + PIYK E+ N + VY ++ A G S ++A
Sbjct: 164 KTIFQEL------IQKKHKTSPIYKSYEYYDDNNHEMFKAEVYVNDKNFALGVGKSKKEA 217
Query: 441 EMNAAKVALQKCP 453
E NAAK AL K
Sbjct: 218 ETNAAKKALDKIE 230
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S +LF + +EG L+ ++++V + LA ++K + L DF+L HG +
Sbjct: 51 GDSVLSLIISDYLFKKYNSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEAS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ + + FEA++GA++LD GI A +
Sbjct: 111 GGRYRDNMLEDLFEAIVGAIYLDSGITSASK 141
>gi|322391777|ref|ZP_08065242.1| ribonuclease III [Streptococcus peroris ATCC 700780]
gi|321145257|gb|EFX40653.1| ribonuclease III [Streptococcus peroris ATCC 700780]
Length = 232
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 111/240 (46%), Gaps = 18/240 (7%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNRFAIEFADQNLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + + R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKSGGRHRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + + F P+++ D K+ LQ+
Sbjct: 119 GDAFEAFLGALLLDKDVATVKNFIYTVMIPKVETGDFEM-ITDYKTHLQELLQV-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ DI Y+V GP + + + V V + + K G S + AE AAK A++K C
Sbjct: 173 GDVDI-CYQVTSETGPAHDKIFEVEVLVEGTSIGKGQGRSKKLAEQEAAKNAVEKGLDSC 231
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ ++F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ + FEA +GAL LD + V + +++ ++ K F+ Y H LQE
Sbjct: 110 GGRHRDTILGDAFEAFLGALLLDKDVATVKNFIYTVMIPKVETGDFEMITDYKTH-LQE 167
>gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 240
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL T RS Y + + N+RLEFLGD+VL + +DYLY HFP++ EG L+ LR+++V
Sbjct: 26 LLGLALTHRSYAYEHGQIPHNERLEFLGDSVLGINVTDYLYRHFPDYAEGRLAKLRAAVV 85
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
++ + + V +G+ + + ++ +D+ AD EA +GA+Y+ A +F
Sbjct: 86 SSVSLAEVARSLGIGQLVKLGHGELTTGGRDKTSILADTTEALIGAIYMTDPSGAA-KFV 144
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P + + D K+ LQ+ + E D P Y++ E GP + + +T
Sbjct: 145 HHIFDPLVDRAVKMGAGLDWKTSLQEIAAAM------ESDPPEYRISE-TGPDHDKRFTA 197
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
G++ +QAE +AA+ A +
Sbjct: 198 VALVDGRTFDPGMGHNKKQAEQHAAENAFR 227
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 84 YRMYMYIHK-----------GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAH 132
+R Y Y H G++ + +L+ FPD EG LA RAA+V + LA
Sbjct: 33 HRSYAYEHGQIPHNERLEFLGDSVLGINVTDYLYRHFPDYAEGRLAKLRAAVVSSVSLAE 92
Query: 133 LAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFL--------------DGGI 178
+A+ +G+ + HG + +A+ EAL+GA+++ D +
Sbjct: 93 VARSLGIGQLVKLGHGELTTGGRDKTSILADTTEALIGAIYMTDPSGAAKFVHHIFDPLV 152
Query: 179 DVADQVFSSVLYKDN--EVRFKQWMYYPQHPLQEQEPDGDRQWV 220
D A ++ + + +K + E+ P++ + E PD D+++
Sbjct: 153 DRAVKMGAGLDWKTSLQEIAAAMESDPPEYRISETGPDHDKRFT 196
>gi|408356893|ref|YP_006845424.1| ribonuclease III [Amphibacillus xylanus NBRC 15112]
gi|407727664|dbj|BAM47662.1| ribonuclease III [Amphibacillus xylanus NBRC 15112]
Length = 229
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLYNH 287
LE G+ F + +LL + FT S Y N N+RLEFLGD VL+L S YLY
Sbjct: 6 LEKKLGITFKNQKLLIQAFTHSS--YVNENRNKIQQDNERLEFLGDAVLELGISQYLYRT 63
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLE 341
+P EG L+ LR+++V ++V + + F ++ K + + R AD+ E
Sbjct: 64 YPNKPEGELTKLRATIVCE--PALVKFALDLKFDQYVLLGKGEERTGGRKRPALLADVFE 121
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AF+GA+Y+D+ A F +P+++ + +E D KS+LQ+ + GE +
Sbjct: 122 AFIGALYLDQDFNAVVNFLHKYIYPKIKNGFMIKEI-DYKSQLQELIQQDKQ---GEIN- 176
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y++I GP + R + V N+ + G + +++E AAK+AL K
Sbjct: 177 --YEIISEKGPAHDREFIAQVKINNKVVGIGHGRTKKESEQRAAKIALDK 224
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 102 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 161
S +L+ +P+ EG L RA IV L A + + ++L G + + +
Sbjct: 57 SQYLYRTYPNKPEGELTKLRATIVCEPALVKFALDLKFDQYVLLGKGEERTGGRKRPALL 116
Query: 162 ANCFEALMGALFLD 175
A+ FEA +GAL+LD
Sbjct: 117 ADVFEAFIGALYLD 130
>gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
gi|122311783|sp|Q0A8Z1.1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1]
Length = 228
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 16/220 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F LL T RS+ T N+RLEFLGD +L + +D LY+ P+ EG L
Sbjct: 13 GYRFRRPELLDEALTHRSV-----TGPDNERLEFLGDGILNFVIADELYHRRPDATEGVL 67
Query: 297 SLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKG 352
S LR++LVN RT + + D+G K + + AD +EA GA+Y+D G
Sbjct: 68 SRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKSILADAVEALFGAIYLDGG 127
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+ + + RL E DPK++LQ+ L G +P Y+V+E G
Sbjct: 128 FDPSRETILRLYRDRLASLPTEAELKDPKTRLQEH------LQAGRRPLPRYEVLEVSGQ 181
Query: 413 TNSRSYTVAVYFKNERL-AKATGNSIQQAEMNAAKVALQK 451
++ +++ VA ++ + A+ S ++AE AA+ L++
Sbjct: 182 SHDQTFRVACRLQDAAVTAEGEAGSRRKAEQQAAEQMLKR 221
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + L+H PD EG L+ RA +V + LA + K + + + G
Sbjct: 43 GDGILNFVIADELYHRRPDATEGVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF------------SSVLYKDNEVRFKQW 200
K +A+ EAL GA++LDGG D + + + KD + R ++
Sbjct: 103 GGQRRKSILADAVEALFGAIYLDGGFDPSRETILRLYRDRLASLPTEAELKDPKTRLQEH 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQAGRRPL 170
>gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453]
gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453]
Length = 232
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 24/221 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITS 281
LKQLQ+ + F + LL + FT S Y N S N+RLEFLGD VL+L S
Sbjct: 5 LKQLQH---KLQIQFRNAMLLKQAFTHAS--YVNEHRFSQSQDNERLEFLGDAVLELTVS 59
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
++LYN FP+ EG L+ LR+++V S+V +G+ F ++ K + R
Sbjct: 60 EFLYNLFPDRPEGELTKLRAAIVCE--PSLVQFAVGLDFGRYVLLGKGEEMTGGRTRPAL 117
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
AD+ E+F+GA+Y+D+G+EA +F FP + Q +D K++LQ+ T
Sbjct: 118 LADVFESFVGALYLDQGLEAVRRFLSDHVFPSVTVNGRPQ-MSDYKTELQEL-----TQH 171
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
G + Y+++E GP + R + VY +E L + +G S
Sbjct: 172 HGMGALE-YRIVEERGPAHEREFVSEVYMGSECLGRGSGRS 211
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+++FPD EG L RAAIV L A + ++L G ++
Sbjct: 50 GDAVLELTVSEFLYNLFPDRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-----VADQVFSSV 188
+A+ FE+ +GAL+LD G++ ++D VF SV
Sbjct: 110 GGRTRPALLADVFESFVGALYLDQGLEAVRRFLSDHVFPSV 150
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 11/191 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD VL+L S+ LY +PE EG L+ LR+ LV + + + + + +
Sbjct: 44 NERLEFLGDAVLELAISETLYKKYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRL 103
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ +DR AD +EA +GA+Y+ + +Q F +L + I NQ D
Sbjct: 104 GKGEDSTGGRDRRSTLADTVEALIGAVYLQTNYDQTKQLILDLFKDQLSH-IDNQRIGDY 162
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K+ +Q+ G+P P Y++++ GP + +S+ V NE + + +G S ++A
Sbjct: 163 KTMIQELVQDRY----GDP--PKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSKKEA 216
Query: 441 EMNAAKVALQK 451
E NAA A QK
Sbjct: 217 EQNAAHFAFQK 227
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P++ EG L RA +V L +A+++ L ++ G D
Sbjct: 51 GDAVLELAISETLYKKYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKGEDST 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
+ + +A+ EAL+GA++L D Q+ L+KD
Sbjct: 111 GGRDRRSTLADTVEALIGAVYLQTNYDQTKQLILD-LFKD 149
>gi|440718234|ref|ZP_20898695.1| ribonuclease III [Rhodopirellula baltica SWK14]
gi|436436569|gb|ELP30300.1| ribonuclease III [Rhodopirellula baltica SWK14]
Length = 297
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL R T + G ++ L SN+RLEFLGD+VL L ++L+N +PE+ EG L
Sbjct: 73 GYDFRDLDLL-RSALTHASGASH-RLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDL 130
Query: 297 SLLRSSLVNNRTQSVV--------CNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
+ ++S++V+ R+ V C +G N PK + +D+ EA + A+Y
Sbjct: 131 TKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYPKSLV-----SDVFEAVIAALY 185
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
ID G E K+ + + Q + KS LQQ R L P+YK+I
Sbjct: 186 IDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQ--FAQRELSA----TPVYKLIR 239
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP + + + + + R A A GN+ + AE AA AL
Sbjct: 240 ETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 280
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF+ +P+ EG L ++A+V + +A ++GL+ ++ G K +++
Sbjct: 118 LFNEYPEYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYP-KSLVSDV 176
Query: 165 FEALMGALFLDGGIDV 180
FEA++ AL++DGG ++
Sbjct: 177 FEAVIAALYIDGGPEI 192
>gi|421285602|ref|ZP_15736379.1| ribonuclease III [Streptococcus pneumoniae GA60190]
gi|395887581|gb|EJG98596.1| ribonuclease III [Streptococcus pneumoniae GA60190]
Length = 232
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 20/241 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+LQ L+ + F LL F S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELQTVLKNHFAIEFTDKNLLETAFAHTS--YANEHRLLKISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YLY +P+ EG LS LR+ +V + + D F + + ++R
Sbjct: 59 SEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
D EAFLGA+ +DK + ++F P+++ D K+ LQ+ L ++G
Sbjct: 119 GDAFEAFLGALLLDKDVAKVKEFIYQVMIPKVEAGEFEM-ITDYKTYLQE----LLQVNG 173
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
D+ I Y+VI GP + + + V V + + + + G S + AE AAK A++K
Sbjct: 174 ---DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEKGLDS 230
Query: 456 C 456
C
Sbjct: 231 C 231
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +L+ +P EG L+ RA IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + FEA +GAL LD DVA
Sbjct: 110 GGRNRDTILGDAFEAFLGALLLDK--DVA 136
>gi|386813044|ref|ZP_10100269.1| ribonuclease III rncS [planctomycete KSU-1]
gi|386405314|dbj|GAB63150.1| ribonuclease III rncS [planctomycete KSU-1]
Length = 250
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 11/226 (4%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
++L + + G F++ +L + T S N SN+RLEFLGD +L +I SDYLY
Sbjct: 8 EKLNECQLAIGYCFHNTLVLEKALTHTSCRLENNL--SNERLEFLGDAILGMIISDYLYK 65
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDRADLLEAF 343
P++ EG L+ ++S +V+ T + V + + F +N + L A++ EA
Sbjct: 66 TLPQYSEGELTKIKSVVVSQATLARVSLEANLQDFLFVGKGLNDRNFLPKSLLANVFEAV 125
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ A+YID G EA F + NQ + KS LQQ + P
Sbjct: 126 IAAIYIDGGFEAAYNFTIKYLAKEIDIVCKNQHEKNYKSILQQYSQKEYGV------TPS 179
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+V++ +GP + +S+ V V K + G S ++AE +AAK L
Sbjct: 180 YRVLQQIGPDHGKSFEVIVLIKGNEYGRGWGKSKKEAEQSAAKETL 225
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I S +L+ P EG L ++ +V LA ++ L+DF+ G +
Sbjct: 51 GDAILGMIISDYLYKTLPQYSEGELTKIKSVVVSQATLARVSLEANLQDFLFVGKGLNDR 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + K +AN FEA++ A+++DGG + A
Sbjct: 111 NFLP-KSLLANVFEAVIAAIYIDGGFEAA 138
>gi|333892335|ref|YP_004466210.1| ribonuclease III [Alteromonas sp. SN2]
gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2]
Length = 229
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
L + G FN++ LL + T RS + N+RLEFLGD +L ++ + L+ FP+
Sbjct: 10 LSKALGYTFNNVALLEQALTHRSAAKQH-----NERLEFLGDAILGMVIGETLFKRFPDV 64
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG L+ +RS+LV T + + + M ++ ++ R AD +EA LGA+
Sbjct: 65 PEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAVEAVLGAI 124
Query: 348 YIDKGMEACEQFCKVCFF---PRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
Y+D GM E+ C V + R++ N D K++LQ+ L G + +P Y
Sbjct: 125 YLDSGM---EEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEY------LQGRKLPLPSY 175
Query: 405 KVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+VI G +++ + V+ ++ A+GNS ++AE AA++ L+
Sbjct: 176 EVISISGKDHAQVFEVSCTVTTLDKPVSASGNSRRKAEQEAARLTLE 222
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF FPD+ EG L R+ +V+ LA LA+ + + + G +A+
Sbjct: 57 LFKRFPDVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADA 116
Query: 165 FEALMGALFLDGGIDVADQVF------------SSVLYKDNEVRFKQWMYYPQHPLQEQE 212
EA++GA++LD G++ V + KD++ R ++++ + PL E
Sbjct: 117 VEAVLGAIYLDSGMEEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYE 176
>gi|421614937|ref|ZP_16055976.1| ribonuclease III [Rhodopirellula baltica SH28]
gi|408494274|gb|EKJ98893.1| ribonuclease III [Rhodopirellula baltica SH28]
Length = 266
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL R T + G ++ L SN+RLEFLGD+VL L ++L+N +PE+ EG L
Sbjct: 42 GYDFRDLDLL-RSALTHASGASH-RLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDL 99
Query: 297 SLLRSSLVNNRTQSVV--------CNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
+ ++S++V+ R+ V C +G N PK + +D+ EA + A+Y
Sbjct: 100 TKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYPKSLV-----SDVFEAVIAALY 154
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
ID G E K+ + + Q + KS LQQ R L P+YK+I
Sbjct: 155 IDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQ--FAQRELSA----TPVYKLIR 208
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP + + + + + R A A GN+ + AE AA AL
Sbjct: 209 ETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 249
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF+ +P+ EG L ++A+V + +A ++GL+ ++ G K +++
Sbjct: 87 LFNEYPEYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYP-KSLVSDV 145
Query: 165 FEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSP 224
FEA++ AL++DGG ++ R K W+ + + + G+ + V
Sbjct: 146 FEAVIAALYIDGGPEIVRD------------RLKLWLAEEVNLAVDTQGSGNHKSV---- 189
Query: 225 LLKQLQYLEYSSGVIFNHIR 244
L+Q E S+ ++ IR
Sbjct: 190 -LQQFAQRELSATPVYKLIR 208
>gi|398310689|ref|ZP_10514163.1| ribonuclease III [Bacillus mojavensis RO-H-1]
Length = 249
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 IEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 RFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E E F KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQEYV----QR 186
Query: 395 DG-GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
DG G + YK+ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 DGKGSLE---YKISNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 201
+ +A+ FEA +GAL+LD G++ + ++ K N+ F M
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM 174
>gi|381393604|ref|ZP_09919325.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330820|dbj|GAB54458.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 224
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 20/236 (8%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
P +K L L Y+ F+++ LL + T RS + N+RLEFLGD VL L+ +
Sbjct: 3 DPYIKLLAQLHYT----FSNVSLLQQALTHRSAARKH-----NERLEFLGDAVLGLVIAQ 53
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
+Y FP EG L+ +RS+LV T + V ++ + + ++ + R AD
Sbjct: 54 RVYEKFPNLPEGKLTRMRSNLVKGETLAKVARELSLGELMKLGPGEMKSGGRRRDSILAD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA LGA+Y++ G++A F R++ +++ D K++LQ+ L +
Sbjct: 114 AVEAILGAIYVESGIDAVALTINTLFEKRIKALDPDEQIKDNKTQLQEY------LQSRQ 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAK-ATGNSIQQAEMNAAKVALQKCP 453
D+P YKV + G +++ +TV ++ K G S + AE AAK L+ P
Sbjct: 168 LDLPDYKVTDIKGKDHAQMFTVKCNVHALKIHKTGAGKSRRIAEQEAAKKILEALP 223
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + ++ FP++ EG L R+ +V+ + LA +A+ + L + M G
Sbjct: 43 GDAVLGLVIAQRVYEKFPNLPEGKLTRMRSNLVKGETLAKVARELSLGELMKLGPGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL------------YKDNEVRFKQW 200
+A+ EA++GA++++ GID +++ KDN+ + +++
Sbjct: 103 GGRRRDSILADAVEAILGAIYVESGIDAVALTINTLFEKRIKALDPDEQIKDNKTQLQEY 162
Query: 201 MYYPQ 205
+ Q
Sbjct: 163 LQSRQ 167
>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
gi|383327459|ref|YP_005353343.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|406580108|ref|ZP_11055328.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|406582771|ref|ZP_11057868.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|406585121|ref|ZP_11060116.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410938000|ref|ZP_11369858.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|415897961|ref|ZP_11551209.1| ribonuclease III [Enterococcus faecium E4453]
gi|416134603|ref|ZP_11598307.1| ribonuclease III [Enterococcus faecium E4452]
gi|427396987|ref|ZP_18889613.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430820973|ref|ZP_19439591.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430823321|ref|ZP_19441893.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430826392|ref|ZP_19444576.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430828822|ref|ZP_19446936.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430831864|ref|ZP_19449912.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430834832|ref|ZP_19452834.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430836416|ref|ZP_19454397.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430839338|ref|ZP_19457279.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430842447|ref|ZP_19460362.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430843103|ref|ZP_19461005.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430850746|ref|ZP_19468503.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430853246|ref|ZP_19470976.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430855706|ref|ZP_19473412.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430858967|ref|ZP_19476585.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430861281|ref|ZP_19478870.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430866354|ref|ZP_19481631.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430892080|ref|ZP_19484486.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430952324|ref|ZP_19486367.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430999207|ref|ZP_19488175.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|431036460|ref|ZP_19492230.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|431081664|ref|ZP_19495754.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|431118143|ref|ZP_19498097.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|431209600|ref|ZP_19500961.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|431234955|ref|ZP_19502978.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|431255661|ref|ZP_19504784.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|431303493|ref|ZP_19508340.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|431380466|ref|ZP_19510847.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|431438089|ref|ZP_19513252.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|431506848|ref|ZP_19515674.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|431545032|ref|ZP_19518673.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|431592292|ref|ZP_19521528.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|431695910|ref|ZP_19524804.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|431739025|ref|ZP_19527965.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|431740695|ref|ZP_19529606.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|431744016|ref|ZP_19532889.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|431747189|ref|ZP_19535988.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|431749381|ref|ZP_19538122.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|431753069|ref|ZP_19541747.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|431755895|ref|ZP_19544537.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|431757896|ref|ZP_19546525.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|431760118|ref|ZP_19548722.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|431763163|ref|ZP_19551716.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|431764954|ref|ZP_19553480.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|431768030|ref|ZP_19556471.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|431769465|ref|ZP_19557875.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|431773324|ref|ZP_19561650.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|431776421|ref|ZP_19564683.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|431779658|ref|ZP_19567850.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|431782539|ref|ZP_19570672.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|431784360|ref|ZP_19572402.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|447911625|ref|YP_007393037.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|364090286|gb|EHM32892.1| ribonuclease III [Enterococcus faecium E4453]
gi|364092476|gb|EHM34848.1| ribonuclease III [Enterococcus faecium E4452]
gi|378937153|gb|AFC62225.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|404454612|gb|EKA01534.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|404457508|gb|EKA04045.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|404463103|gb|EKA08801.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410733639|gb|EKQ75562.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|425722734|gb|EKU85628.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430438958|gb|ELA49349.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430442419|gb|ELA52464.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430445116|gb|ELA54900.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430480505|gb|ELA57679.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430482717|gb|ELA59822.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430484901|gb|ELA61848.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430488543|gb|ELA65214.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430490796|gb|ELA67292.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430493528|gb|ELA69831.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430498157|gb|ELA74165.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430535105|gb|ELA75528.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430541068|gb|ELA81245.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430544486|gb|ELA84515.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430546248|gb|ELA86210.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430550314|gb|ELA90111.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430551582|gb|ELA91333.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430555745|gb|ELA95280.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430557459|gb|ELA96918.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430563000|gb|ELB02231.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|430563314|gb|ELB02543.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|430565596|gb|ELB04742.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|430568100|gb|ELB07157.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|430570632|gb|ELB09578.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|430572815|gb|ELB11651.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|430577859|gb|ELB16439.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|430580134|gb|ELB18614.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|430582334|gb|ELB20761.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|430586924|gb|ELB25166.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|430587235|gb|ELB25468.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|430591917|gb|ELB29944.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|430592080|gb|ELB30102.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|430596568|gb|ELB34392.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|430597863|gb|ELB35645.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|430602778|gb|ELB40328.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|430606079|gb|ELB43451.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|430606718|gb|ELB44056.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|430611510|gb|ELB48591.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|430612817|gb|ELB49848.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|430616010|gb|ELB52935.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|430618401|gb|ELB55248.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|430622857|gb|ELB59567.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|430625387|gb|ELB62027.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|430629725|gb|ELB66114.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|430629759|gb|ELB66147.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|430636747|gb|ELB72807.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|430637040|gb|ELB73084.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|430640972|gb|ELB76793.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|430641420|gb|ELB77222.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|430647176|gb|ELB82624.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|430649934|gb|ELB85301.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|445187334|gb|AGE28976.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 228
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 15/212 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
L+ + ++F+ + LL + FT S + NL L N+RLEFLGD VL+L+ S YL+ +P
Sbjct: 9 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLG 345
EG L+ R+++V + S + + + + + + R DL EAFLG
Sbjct: 69 HLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLG 128
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-Y 404
A+Y+D+G + F + FP+++ + E D K+KLQ+ D+ I Y
Sbjct: 129 ALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEM-DHKTKLQEVLQK-------SGDVSIEY 180
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
++I GP + R + + VY ++ + G S
Sbjct: 181 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKS 212
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +LF ++P + EG L RAAIV+ L+ AK + ++L G +
Sbjct: 51 GDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD G D V++
Sbjct: 111 GGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 148
>gi|77416567|sp|Q7UGZ7.2|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 266
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL R T + G ++ L SN+RLEFLGD+VL L ++L+N +PE+ EG L
Sbjct: 42 GYDFRDLDLL-RSALTHASGASH-RLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDL 99
Query: 297 SLLRSSLVNNRTQSVV--------CNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
+ ++S++V+ R+ V C +G N PK + +D+ EA + A+Y
Sbjct: 100 TKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYPKSLV-----SDVFEAVIAALY 154
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
ID G E K+ + + Q + KS LQQ R L P+YK+I
Sbjct: 155 IDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQ--FAQRELSA----TPVYKLIR 208
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP + + + + + R A A GN+ + AE AA AL
Sbjct: 209 ETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 249
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF+ +P+ EG L ++A+V + +A ++GL+ ++ G K +++
Sbjct: 87 LFNEYPEYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYP-KSLVSDV 145
Query: 165 FEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSP 224
FEA++ AL++DGG ++ R K W+ + + + G+ + V
Sbjct: 146 FEAVIAALYIDGGPEIVRD------------RLKLWLAEEVNLAVDTQGSGNHKSV---- 189
Query: 225 LLKQLQYLEYSSGVIFNHIR 244
L+Q E S+ ++ IR
Sbjct: 190 -LQQFAQRELSATPVYKLIR 208
>gi|406589966|ref|ZP_11064377.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
gi|404470038|gb|EKA14718.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
Length = 220
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 15/212 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
L+ + ++F+ + LL + FT S + NL L N+RLEFLGD VL+L+ S YL+ +P
Sbjct: 1 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 60
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLG 345
EG L+ R+++V + S + + + + + + R DL EAFLG
Sbjct: 61 HLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLG 120
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-Y 404
A+Y+D+G + F + FP+++ + E D K+KLQ+ D+ I Y
Sbjct: 121 ALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEM-DHKTKLQEVLQK-------SGDVSIEY 172
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
++I GP + R + + VY ++ + G S
Sbjct: 173 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKS 204
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +LF ++P + EG L RAAIV+ L+ AK + ++L G +
Sbjct: 43 GDAVLELMVSQYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD G D V++
Sbjct: 103 GGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 140
>gi|410727093|ref|ZP_11365316.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410599428|gb|EKQ53981.1| ribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 270
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 12/232 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ +E + GV FN+ LL T S G N+RLEFLGD+VLQL +++L+N++
Sbjct: 44 LKEIEENLGVYFNNPTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEHLFNNY 103
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
EG L+ +RS +V + + I + + + + ++R AD +EA +
Sbjct: 104 KHKSEGELTKIRSLIVCENSLYEIARKINLGSYIRMSKGEELTGGRERISIQADAVEAVI 163
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI- 403
A+Y+DKG+ F + F ++ I N+ D K+KLQ+ L DG ++ I
Sbjct: 164 AAVYLDKGIGFVRDFILLHFEEVIKKAINNEIVLDFKTKLQE----LLQKDG---EVAIQ 216
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
Y++I++ GP + R + V + + + +G S ++AE NAAK AL I
Sbjct: 217 YELIKYEGPPHRRKFYTNVIIDKKLMGEGSGYSKKEAEQNAAKQALDMLEGI 268
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + HLF+ + EG L R+ IV L +A++I L ++ + G +L
Sbjct: 87 GDSVLQLCITEHLFNNYKHKSEGELTKIRSLIVCENSLYEIARKINLGSYIRMSKGEELT 146
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
E A+ EA++ A++LD GI
Sbjct: 147 GGRERISIQADAVEAVIAAVYLDKGI 172
>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
Length = 297
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL R T + G ++ L SN+RLEFLGD+VL L ++L+N +PE+ EG L
Sbjct: 73 GYDFRDLDLL-RSALTHASGASH-RLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDL 130
Query: 297 SLLRSSLVNNRTQSVV--------CNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
+ ++S++V+ R+ V C +G N PK + +D+ EA + A+Y
Sbjct: 131 TKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYPKSLV-----SDVFEAVIAALY 185
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
ID G E K+ + + Q + KS LQQ R L P+YK+I
Sbjct: 186 IDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQ--FAQRELSA----TPVYKLIR 239
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP + + + + + R A A GN+ + AE AA AL
Sbjct: 240 ETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 280
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF+ +P+ EG L ++A+V + +A ++GL+ ++ G K +++
Sbjct: 118 LFNEYPEYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYP-KSLVSDV 176
Query: 165 FEALMGALFLDGGIDV 180
FEA++ AL++DGG ++
Sbjct: 177 FEAVIAALYIDGGPEI 192
>gi|255994063|ref|ZP_05427198.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993731|gb|EEU03820.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
+NQRLE+LGD +L L+ + L+ P++ EG+L+ RS++VNN + S + + +
Sbjct: 42 TNQRLEYLGDAILYLVIGELLFIKRPDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIE 101
Query: 324 IINPKVDLKMKDR-----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN 378
++ + M R AD EA +GA+++D G E +F F R++ +
Sbjct: 102 -MDSSTEKHMGRRNEAILADTFEALMGAIFLDAGYEKTHEFINKLFIKRIEEAATGEAKA 160
Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
D K++LQ+C G + I Y I G + +++ + Y N +L++ G S
Sbjct: 161 DYKTRLQECVHAC-----GITNYYIKYHTISEKGDQHCKTFRIGAYLNNTKLSEGVGKSK 215
Query: 438 QQAEMNAAKVALQKCPSICPQLDHQKRVIAK 468
++A+ NAA++ + + ++D + + IAK
Sbjct: 216 KEAQQNAARLFFENMKNDDKRIDKKLKSIAK 246
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF PD +EG L R+ IV N L+ +AK++ L + ++ + +A+
Sbjct: 62 LFIKRPDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIEMDSSTEKHMGRRNEAILADT 121
Query: 165 FEALMGALFLDGGIDVADQVFSSVLYK 191
FEALMGA+FLD G + + + + K
Sbjct: 122 FEALMGAIFLDAGYEKTHEFINKLFIK 148
>gi|410658788|ref|YP_006911159.1| Ribonuclease III [Dehalobacter sp. DCA]
gi|410661777|ref|YP_006914148.1| Ribonuclease III [Dehalobacter sp. CF]
gi|409021143|gb|AFV03174.1| Ribonuclease III [Dehalobacter sp. DCA]
gi|409024133|gb|AFV06163.1| Ribonuclease III [Dehalobacter sp. CF]
Length = 248
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 14/197 (7%)
Query: 259 NLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM 318
N L +NQRLEFLGD VL I +YLY ++P+ EG L+ +R+++VN T + I +
Sbjct: 57 NSGLENNQRLEFLGDAVLDFIIGEYLYQNYPDKPEGELTKMRAAVVNETTLARKARSINL 116
Query: 319 PFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN 374
+ + +DR AD LEA +GA+Y+ G E +F P + LN
Sbjct: 117 GQALFLGKGEQSSGGRDRPSIIADALEAVIGAIYLQYGFEKVRKFILDMLVPEI--LELN 174
Query: 375 Q-EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT 433
+ + D K+ LQ+ E ++ Y++IE GP + + +T VY E K
Sbjct: 175 EGNYGDFKTMLQEKA------QKKEYEV-CYRIIEETGPDHDKRFTAGVYLHGELQGKGI 227
Query: 434 GNSIQQAEMNAAKVALQ 450
G + ++AE AA AL+
Sbjct: 228 GKTKKEAEQQAAHFALK 244
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI +L+ +PD EG L RAA+V LA A+ I L + G
Sbjct: 70 GDAVLDFIIGEYLYQNYPDKPEGELTKMRAAVVNETTLARKARSINLGQALFLGKGEQSS 129
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD----NEVRFKQWMYYPQHPL 208
+ +A+ EA++GA++L G + + +L + NE + + Q
Sbjct: 130 GGRDRPSIIADALEAVIGAIYLQYGFEKVRKFILDMLVPEILELNEGNYGDFKTMLQEKA 189
Query: 209 QEQE------------PDGDRQWVEQSPLLKQLQ 230
Q++E PD D+++ L +LQ
Sbjct: 190 QKKEYEVCYRIIEETGPDHDKRFTAGVYLHGELQ 223
>gi|157374287|ref|YP_001472887.1| ribonuclease III [Shewanella sediminis HAW-EB3]
gi|189043354|sp|A8FSD6.1|RNC_SHESH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157316661|gb|ABV35759.1| Ribonuclease III [Shewanella sediminis HAW-EB3]
Length = 225
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 23/233 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K + L + G FN LL T RS + N+RLEFLGD++L +I SD L+
Sbjct: 4 IKNMPRLCRTLGYEFNDQSLLEHALTHRSASSKH-----NERLEFLGDSILSIIISDALF 58
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ FP+ EG LS +R++LV + + + + + + N+ ++ R AD +E
Sbjct: 59 HQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAVE 118
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYF-ILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
A +GA+YID G+E C + RL +NQ+ DPK+ LQ+ L G +
Sbjct: 119 AIIGAVYIDSGVEKCRCLVLSWYESRLAIIQPVNQK--DPKTLLQEL------LQGFKKP 170
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAK---ATGNSIQQAEMNAAKVALQ 450
+P+YKVI+ G +++++TV Y E L+K +S ++AE AA AL+
Sbjct: 171 LPVYKVIDIKGEAHAQTFTVECYV--EELSKPVIGIASSRRKAEQLAAADALE 221
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S LFH FP EG L+ RA +V + LA + L D++ G
Sbjct: 45 GDSILSIIISDALFHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ EA++GA+++D G++
Sbjct: 105 GGFRRESIIADAVEAIIGAVYIDSGVE 131
>gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1]
gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1]
Length = 245
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 10/196 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
+N+RLEFLGD+VL LI +D+LY +P EG LS RS +V+ + S + +I + +
Sbjct: 54 NNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYIL 113
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + +++ AD +EAF+GA+Y+D G +F F ++ ++ D
Sbjct: 114 LGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFLRATEFVVGLFDMYIRLMFNRGDFKD 173
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
KS LQ+ + P YK+ + +GP + + + V +Y ++ G S ++
Sbjct: 174 YKSLLQEYVQKKYKIS------PSYKLDKEIGPDHDKVFCVELYVGENFISNGKGKSKKE 227
Query: 440 AEMNAAKVALQKCPSI 455
AEM AA+VAL+ +I
Sbjct: 228 AEMRAAEVALKAMENI 243
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HL+ +P+ EG L+ R+ IV L+++A+ I L ++L G +
Sbjct: 62 GDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
K +A+ EA +GA++LD G
Sbjct: 122 DGRNKKGILADAIEAFVGAIYLDSG 146
>gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
Length = 231
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+L+ L G F+ I+LL RS + + +N+RLEFLGD VL LI+++Y+Y
Sbjct: 5 KLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLISTEYIY 64
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ +EG L+ L+S +++ S V +I + + + N + +DR D E
Sbjct: 65 TKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDRKSILGDAFE 124
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+++D G + ++ ++ +E D K+ LQ+ + + I
Sbjct: 125 ALIGAIFMDSGFDEAKRIALKYLKDKIDNIDDLEELKDYKTLLQELFQSKFHI------I 178
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
P Y+++ GP +++ + +AV K E + TG S ++AE NAA+ A
Sbjct: 179 PNYEILSEKGPDHNKKFEIAVKLKEEIVGIGTGTSKKEAEKNAAREA 225
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I++ +++ D EG LA ++ I+ + ++K I L +++ ++G ++
Sbjct: 51 GDAVLDLISTEYIYTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEIT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ K + + FEAL+GA+F+D G D A ++
Sbjct: 111 GGRDRKSILGDAFEALIGAIFMDSGFDEAKRI 142
>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
Length = 237
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 21/239 (8%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITSDYL 284
K L++ E S + FN+ LL R T +S N L L N+RLEFLGD+VL L S Y+
Sbjct: 9 KTLKF-EKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSISTYI 67
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLL 340
+N F + EG L+ +R+ +V+ + ++G F + +D AD +
Sbjct: 68 FNKFSDFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILADTM 127
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN----QEWNDPKSKLQQCCLTLRTLDG 396
EA GA+Y+D+ + F L+ I+N D K+ LQ+ +
Sbjct: 128 EAIFGALYLDQSFKVVSDFI----LELLKVDIINVAAGNHIQDYKTMLQEVIQDMGNFR- 182
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+VI+ GP +++++ VAV E L G+S ++AE AAKVAL K +
Sbjct: 183 -----PEYEVIDEEGPDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAAKVALDKLDKL 236
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ S ++F+ F D EG LA RA IV LA AKRI L ++ G ++
Sbjct: 55 GDSVLSLSISTYIFNKFSDFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMT 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E +A+ EA+ GAL+LD V +L D
Sbjct: 115 GGRERDSILADTMEAIFGALYLDQSFKVVSDFILELLKVD 154
>gi|417304879|ref|ZP_12091876.1| ribonuclease III [Rhodopirellula baltica WH47]
gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
Length = 297
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL R T + G ++ L SN+RLEFLGD+VL L ++L+N +PE+ EG L
Sbjct: 73 GYDFRDLDLL-RSALTHASGASH-RLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDL 130
Query: 297 SLLRSSLVNNRTQSVV--------CNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
+ ++S++V+ R+ V C +G N PK + +D+ EA + A+Y
Sbjct: 131 TKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYPKSLV-----SDVFEAVIAALY 185
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
ID G E K+ + + Q + KS LQQ R L P+YK+I
Sbjct: 186 IDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQ--FAQRELSA----TPVYKLIR 239
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP + + + + + R A A GN+ + AE AA AL
Sbjct: 240 ETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 280
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF+ +P+ EG L ++A+V + +A ++GL+ ++ G K +++
Sbjct: 118 LFNEYPEYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYP-KSLVSDV 176
Query: 165 FEALMGALFLDGGIDV 180
FEA++ AL++DGG ++
Sbjct: 177 FEAVIAALYIDGGPEI 192
>gi|435854133|ref|YP_007315452.1| ribonuclease III [Halobacteroides halobius DSM 5150]
gi|433670544|gb|AGB41359.1| ribonuclease III [Halobacteroides halobius DSM 5150]
Length = 232
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 16/207 (7%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
V F+ ++LL + T +S Y N L + N+RLEFLGD+VL LI S Y++ ++P+H E
Sbjct: 17 VQFSDLKLLEKAITHKS--YANEKQELKIKDNERLEFLGDSVLDLIISRYIFLNYPDHPE 74
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G L+ +RS +V+ + +I + + + + + R AD EA +G++Y+
Sbjct: 75 GELAKIRSVVVSAPILAEKAREIELGKYMLLGKGEEMTGGRKRDSILADGFEAVVGSIYL 134
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D+G+EA ++F P ++ D K+ LQ+ L P YKV+E
Sbjct: 135 DQGLEASQEFILDLLVPNIKEVEQGSYVRDYKTLLQELIQKDSNLR------PDYKVVEE 188
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNS 436
GP +++ +TV V F E L G S
Sbjct: 189 KGPDHNKRFTVEVIFDQEILGVGVGFS 215
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S ++F +PD EG LA R+ +V LA A+ I L +ML G ++
Sbjct: 53 GDSVLDLIISRYIFLNYPDHPEGELAKIRSVVVSAPILAEKAREIELGKYMLLGKGEEMT 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ +A+ FEA++G+++LD G++ + + +L
Sbjct: 113 GGRKRDSILADGFEAVVGSIYLDQGLEASQEFILDLL 149
>gi|390934856|ref|YP_006392361.1| ribonuclease 3 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570357|gb|AFK86762.1| Ribonuclease 3 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 232
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 11/237 (4%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT-LGSNQRLEFLGDTVLQLITSD 282
L + + LE + G FN+ +LL T S + L SN+RLEFLGD+VL ++ S+
Sbjct: 2 ELSDRYENLEKNIGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISE 61
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
YLY + + EG+LS R+ +V + + +I + + NI + ++R AD
Sbjct: 62 YLYKNRTDLEEGYLSKYRAEIVCEPSLARCAREIEIGKYLNIGRGEEMTGGRNRDSILAD 121
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA + A+Y+D ++ + F + + + D K+KLQ+ + G E
Sbjct: 122 AMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKM----GSE 177
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
IY++I+ GP +++ + + V+ RL + G S ++AE AA AL K I
Sbjct: 178 R--VIYRLIDEYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGLI 232
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +L+ D+EEG L+ YRA IV LA A+ I + ++ G ++
Sbjct: 51 GDSVLSIVISEYLYKNRTDLEEGYLSKYRAEIVCEPSLARCAREIEIGKYLNIGRGEEMT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGI------------DVADQVFSSVLYKDNEVRFKQ 199
+A+ EAL+ A++LD + + ++V S ++Y+D + + ++
Sbjct: 111 GGRNRDSILADAMEALIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQE 169
>gi|375091730|ref|ZP_09738018.1| ribonuclease III [Helcococcus kunzii ATCC 51366]
gi|374562617|gb|EHR33944.1| ribonuclease III [Helcococcus kunzii ATCC 51366]
Length = 238
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 13/234 (5%)
Query: 229 LQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L+ LE FN+ LL A V T+ + +++L N+RLEFLGD VL+++ S+ L+
Sbjct: 11 LKELEDKINYKFNNFELLNLAFVHTSYANEHSSLKGKHNERLEFLGDAVLEMVFSEILFK 70
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP--FFANIINPKVDLKMKD--RADLLEA 342
+F EG+L+ LRS+LV + S + ++I + K + KD +ADL EA
Sbjct: 71 NFKPKQEGYLTKLRSNLVCEASFSELSDEINLSKYLLLGKGEEKTGGRHKDSIKADLFEA 130
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRL-QYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
F GA+Y+D G E F ++ I+ + ND KS LQ+ + ++
Sbjct: 131 FNGALYLDAGYEVVYNFIYGLIKDKIFDENIVVENVNDYKSMLQEHLHKYKNIN------ 184
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
Y++++ GP++ +++ + Y ++ + G + + AE NAAK AL+K I
Sbjct: 185 LKYELVKEEGPSHDKTFYIEAYLDSKFIGAGKGRNKKFAEQNAAKNALKKLHVI 238
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S LF F +EG L R+ +V + L+ I L ++L G +
Sbjct: 56 GDAVLEMVFSEILFKNFKPKQEGYLTKLRSNLVCEASFSELSDEINLSKYLLLGKGEEKT 115
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA---------DQVFSSVLYKDNEVRFKQWMYY 203
A+ FEA GAL+LD G +V D++F + +N +K +
Sbjct: 116 GGRHKDSIKADLFEAFNGALYLDAGYEVVYNFIYGLIKDKIFDENIVVENVNDYKSMLQE 175
Query: 204 PQHP----------LQEQEPDGDRQW 219
H ++E+ P D+ +
Sbjct: 176 HLHKYKNINLKYELVKEEGPSHDKTF 201
>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642]
gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY]
gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5]
gi|384175334|ref|YP_005556719.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|386758316|ref|YP_006231532.1| ribonuclease III [Bacillus sp. JS]
gi|402775838|ref|YP_006629782.1| ribonuclease III [Bacillus subtilis QB928]
gi|418033261|ref|ZP_12671738.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|428279187|ref|YP_005560922.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
gi|430758984|ref|YP_007209705.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
gi|443632739|ref|ZP_21116918.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|449094285|ref|YP_007426776.1| ribonuclease III [Bacillus subtilis XF-1]
gi|452914014|ref|ZP_21962641.1| ribonuclease III [Bacillus subtilis MB73/2]
gi|7531275|sp|P51833.2|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5]
gi|349594558|gb|AEP90745.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|351469409|gb|EHA29585.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|384931598|gb|AFI28276.1| ribonuclease III [Bacillus sp. JS]
gi|402481020|gb|AFQ57529.1| Ribonuclease III [Bacillus subtilis QB928]
gi|407958999|dbj|BAM52239.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|407964576|dbj|BAM57815.1| ribonuclease III [Bacillus subtilis BEST7003]
gi|430023504|gb|AGA24110.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
gi|443347562|gb|ELS61620.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|449028200|gb|AGE63439.1| ribonuclease III [Bacillus subtilis XF-1]
gi|452116434|gb|EME06829.1| ribonuclease III [Bacillus subtilis MB73/2]
Length = 249
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 23/237 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 RFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E E F KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQEYVQR---- 186
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G+ + YK+ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 -DGKGSLE-YKISNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ FEA +GAL+LD G++
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLE 151
>gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2]
gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2]
Length = 233
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 16/227 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+L L S G + +I L R T RSMG N N+RLEFLGD+++ + +D L++
Sbjct: 9 KLNRLSKSLGYQYKNIEFLQRALTHRSMGAKN-----NERLEFLGDSLVNFMIADALFHQ 63
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
F + EG LS +R+ LV T + + + + + + ++ R AD +EA
Sbjct: 64 FHKISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKSGGYRRESIIADTVEAI 123
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ ++Y D G++AC F + RL+ ++ DPK++LQ+ L +P
Sbjct: 124 IASVYEDGGLDACRAFVMRLYENRLKELDPSKIGKDPKTRLQEF------LQSNREQLPE 177
Query: 404 YKVIEHVGPTNSRSYTVAVYF-KNERLAKATGNSIQQAEMNAAKVAL 449
Y V+ GP +++ +TV+ Y K R +AT + ++AE AA+ AL
Sbjct: 178 YSVMTVNGPAHAQEFTVSCYVAKLNRKFEATATNRRKAEQVAAQEAL 224
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + LFH F I EG L+ RA +V+ + LA + K L D+++ G
Sbjct: 48 GDSLVNFMIADALFHQFHKISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKS 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD--NEVRFKQWMYYPQHPLQE 210
+ +A+ EA++ +++ DGG+D A + F LY++ E+ + P+ LQE
Sbjct: 108 GGYRRESIIADTVEAIIASVYEDGGLD-ACRAFVMRLYENRLKELDPSKIGKDPKTRLQE 166
>gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563]
Length = 247
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Query: 259 NLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM 318
NL L N+R+EFLGD VL+L+ S+YLY ++PE EG +S LR+ +V + + C + G
Sbjct: 55 NLALQDNERIEFLGDAVLELVVSNYLYRNYPEMDEGRMSSLRALIVREESLAKRCVECGF 114
Query: 319 PFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN 374
F + N + + R DL E+ LGA+Y+D G++A E + +P+++
Sbjct: 115 DQFVRLGNGEEASNGRKRPSLLCDLFESVLGAIYLDLGLDAIEHLMSLTIYPKIKNGDFT 174
Query: 375 QEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKAT 433
+ +D K+ LQ+ E I + Y++ GP +S+ + VAV +E + +
Sbjct: 175 R-LSDAKTALQEELQK-------EGAIQLAYELESESGPAHSKEFHVAVRLYDEIIGRGV 226
Query: 434 GNS 436
G+S
Sbjct: 227 GHS 229
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 56/98 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ +P+++EG +++ RA IV+ + LA G + F+ +G +
Sbjct: 68 GDAVLELVVSNYLYRNYPEMDEGRMSSLRALIVREESLAKRCVECGFDQFVRLGNGEEAS 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + + FE+++GA++LD G+D + + S +Y
Sbjct: 128 NGRKRPSLLCDLFESVLGAIYLDLGLDAIEHLMSLTIY 165
>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
Length = 233
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 11/205 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
+L T RS Y N + +N+RLEFLGD++L + LY PE EG L+ R+SLV
Sbjct: 24 VLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLYRDNPELDEGDLAKRRASLV 83
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
++ + + IG+ + + + +++ AD +EA +GA Y+D G +A
Sbjct: 84 SSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVEAIIGAAYLDLGGDAATALV 143
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
P L DPK+ LQ+ L +P Y+ IE GP +S+ +
Sbjct: 144 LRLVAPLLADPERFGAAMDPKTSLQELAAQLGR------GVPDYR-IEDSGPDHSKRFHA 196
Query: 421 AVYFKNERLAKATGNSIQQAEMNAA 445
++ N+ +A TG+S +QAEM AA
Sbjct: 197 SLVLSNDVIATGTGSSKKQAEMAAA 221
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 60 ASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKG--NN----------FSQFITSIHLFH 107
+SQA + + V + V+++ +R + Y + G NN Q +T + L+
Sbjct: 7 SSQAELSAVLGVEINPDVLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVT-VKLYR 65
Query: 108 VFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEA 167
P+++EG LA RA++V + LA +A+ IGL ++ G + E +A+ EA
Sbjct: 66 DNPELDEGDLAKRRASLVSSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVEA 125
Query: 168 LMGALFLDGGIDVADQV---FSSVLYKDNEVRFKQWMYYPQHPLQE 210
++GA +LD G D A + + L D E RF M P+ LQE
Sbjct: 126 IIGAAYLDLGGDAATALVLRLVAPLLADPE-RFGAAM-DPKTSLQE 169
>gi|335996787|ref|ZP_08562704.1| ribonuclease III [Lactobacillus ruminis SPM0211]
gi|335351857|gb|EGM53348.1| ribonuclease III [Lactobacillus ruminis SPM0211]
Length = 230
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 11/189 (5%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
+R+EFLGD V+QL S+YL+ +P EG LS LR+++V + S + + +
Sbjct: 45 ERIEFLGDAVMQLCVSEYLFKRYPSFPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLG 104
Query: 326 NPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++R+ D+ E+F+GA+Y+D+G + +F FP+L + D K
Sbjct: 105 KGEEKADARNRSSLLCDIFESFIGALYLDQGKDKVVEFISAVVFPKLDMGWFDH-LLDHK 163
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
++LQ+ G+ I YK+++ GP N ++YT+AVY +++ + G+S + AE
Sbjct: 164 TELQEYLQQ-----NGDCKIE-YKMLDEKGPDNDKTYTMAVYADGKKIGEGVGSSKKNAE 217
Query: 442 MNAAKVALQ 450
AA AL+
Sbjct: 218 QAAAYQALK 226
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +LF +P EG L+ RAA+V + AK ++++ G +
Sbjct: 51 GDAVMQLCVSEYLFKRYPSFPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FE+ +GAL+LD G D + S+V++
Sbjct: 111 DARNRSSLLCDIFESFIGALYLDQGKDKVVEFISAVVF 148
>gi|350265905|ref|YP_004877212.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349598792|gb|AEP86580.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 249
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 RFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E E F KV FP++ + D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQEYV----QR 186
Query: 395 DG-GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
DG G + YK+ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 DGKGSLE---YKISNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ FEA +GAL+LD G++
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLE 151
>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
Length = 265
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F + LL + FT S Y N N+RLEFLGD VL+L S +L+ +P
Sbjct: 45 GIQFTNEALLFQAFTHSS--YVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFKKYPTMS 102
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG L+ LR+++V + N+ M F ++ K + R AD+ EAF+GA
Sbjct: 103 EGELTKLRAAVVCEPSLVTFANE--MDFGKLVLLGKGEEMTGGRSRPALLADVFEAFIGA 160
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG-GEPDIPIYK 405
+Y+D+G++ K FP++ + D KS+LQ+ DG G+ + YK
Sbjct: 161 LYLDQGLDTVVTILKKVVFPKINEGAFSHVM-DFKSQLQEVI----QRDGVGQLE---YK 212
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
V++ GP ++R + V E L G S ++AE AA+VA+ K
Sbjct: 213 VLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITKI 259
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAA+V L A + +L G ++
Sbjct: 82 GDAVLELTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMT 141
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D + V++ K NE F M + LQE
Sbjct: 142 GGRSRPALLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQ-LQE 199
>gi|384045183|ref|YP_005493200.1| Ribonuclease III [Bacillus megaterium WSH-002]
gi|345442874|gb|AEN87891.1| Ribonuclease III [Bacillus megaterium WSH-002]
Length = 248
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F + LL + FT S Y N N+RLEFLGD VL+L S +L+ +P
Sbjct: 28 GIQFTNEALLFQAFTHSS--YVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFKKYPTMS 85
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG L+ LR+++V + N+ M F ++ K + R AD+ EAF+GA
Sbjct: 86 EGELTKLRAAVVCEPSLVTFANE--MDFGKLVLLGKGEEMTGGRSRPALLADVFEAFIGA 143
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG-GEPDIPIYK 405
+Y+D+G++ K FP++ + D KS+LQ+ DG G+ + YK
Sbjct: 144 LYLDQGLDTVVTILKKVVFPKINEGAFSHVM-DFKSQLQEVI----QRDGVGQLE---YK 195
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
V++ GP ++R + V E L G S ++AE AA+VA+ K
Sbjct: 196 VLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITKI 242
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAA+V L A + +L G ++
Sbjct: 65 GDAVLELTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D + V++ K NE F M + LQE
Sbjct: 125 GGRSRPALLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQ-LQE 182
>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
Length = 248
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F + LL + FT S Y N N+RLEFLGD VL+L S +L+ +P
Sbjct: 28 GIQFTNEALLFQAFTHSS--YVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFKKYPTMS 85
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG L+ LR+++V + N+ M F ++ K + R AD+ EAF+GA
Sbjct: 86 EGELTKLRAAVVCEPSLVTFANE--MDFGKLVLLGKGEEMTGGRSRPALLADVFEAFIGA 143
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG-GEPDIPIYK 405
+Y+D+G++ K FP++ + D KS+LQ+ DG G+ + YK
Sbjct: 144 LYLDQGLDTVVTILKKVVFPKINEGAFSHVM-DFKSQLQEVI----QRDGVGQLE---YK 195
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
V++ GP ++R + V E L G S ++AE AA+VA+ K
Sbjct: 196 VLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITKI 242
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAA+V L A + +L G ++
Sbjct: 65 GDAVLELTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D + V++ K NE F M + LQE
Sbjct: 125 GGRSRPALLADVFEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQ-LQE 182
>gi|345019922|ref|ZP_08783535.1| ribonuclease III [Ornithinibacillus scapharcae TW25]
Length = 227
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 17/231 (7%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
LE + F +I ++ + FT S + +L N+RLEFLGD VL+L S YLY +P
Sbjct: 6 LEELLNIQFRNIDVVKQAFTHSSYVNEHRDLHTSDNERLEFLGDAVLELGVSQYLYRKYP 65
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAF 343
E EG ++ LR+++V + + F +I+ K + R AD+ EAF
Sbjct: 66 EMPEGEMTKLRAAIVCEPSLEAFAR--SLDFGEHILLGKGEEMTGGRNRPALLADVFEAF 123
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+Y+D+G E +F + FP++ + D KSKLQ+ R
Sbjct: 124 LGAVYLDQGFETALEFLEKHVFPKIDTGAFSHGM-DYKSKLQEKVQQDRN------KTIE 176
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
Y++I+ GP++++ + + + G + ++AE AAK AL K +
Sbjct: 177 YRIIDERGPSHNKEFVSELLINDNVFGTGIGRTKKEAEQRAAKNALDKLEN 227
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P++ EG + RAAIV L A+ + + +L G ++
Sbjct: 48 GDAVLELGVSQYLYRKYPEMPEGEMTKLRAAIVCEPSLEAFARSLDFGEHILLGKGEEMT 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+A+ FEA +GA++LD G + A
Sbjct: 108 GGRNRPALLADVFEAFLGAVYLDQGFETA 136
>gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
Length = 270
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 15/245 (6%)
Query: 214 DGDRQWVEQSPLL--KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRL 268
DG E P L + + YL G +++ L T RS+ + T + SNQRL
Sbjct: 19 DGGNGSNETVPALSAETIAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRL 78
Query: 269 EFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF----ANI 324
EFLGD+VL L+ SDYL+ FP EG LS RS +VN ++ + + + + +
Sbjct: 79 EFLGDSVLGLLISDYLFRTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESA 138
Query: 325 INPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKL 384
K+ AD E+ GA+Y+DKG+ A E F + + ++ + ++ KS+L
Sbjct: 139 DRNKITSSDSALADAFESLTGAIYLDKGILAAENFIRKHVLEHENFRMIVEAEHNYKSRL 198
Query: 385 QQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNA 444
+ + R L +P+Y V+E G + + +TV V + L T + AE A
Sbjct: 199 IEYTQS-RHL-----PMPVYSVLEECGAEHEKQFTVGVSCSDRHLGSGTARRKKDAEQLA 252
Query: 445 AKVAL 449
AK AL
Sbjct: 253 AKEAL 257
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +LF FP EG L++ R+ IV + LA A + L D++L +D
Sbjct: 82 GDSVLGLLISDYLFRTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESADRN 141
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD 182
A+A+ FE+L GA++LD GI A+
Sbjct: 142 KITSSDSALADAFESLTGAIYLDKGILAAE 171
>gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061]
gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061]
Length = 247
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 21/246 (8%)
Query: 216 DRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGD 273
D+Q +QS L+Q + + V F + +LL + FT S + N+RLEFLGD
Sbjct: 7 DKQ--KQSKKLEQFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGD 64
Query: 274 TVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM 333
VL+L S +L+ +P EG L+ LR+++V + + +++ F +++ +M
Sbjct: 65 AVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEM 121
Query: 334 ---KDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
+ R AD+ EAF+GA+Y+D+G+E E+F + +P++ + D KS+LQ+
Sbjct: 122 TGGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVM-DFKSQLQE 180
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
DG + Y ++ GP ++R + V + E L G S ++AE +AA+
Sbjct: 181 FV----QRDG--KGVLEYHILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQ 234
Query: 447 VALQKC 452
AL K
Sbjct: 235 EALAKL 240
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 63 GDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 201
+ +A+ FEA +GAL+LD G++ ++ + +Y K N+ F M
Sbjct: 123 GGRKRPALLADVFEAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVM 172
>gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
gi|38372423|sp|Q8ER05.1|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
Length = 228
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNH 287
LE G+ F LL FT S Y N L N+RLEFLGD VL+L S YLY +
Sbjct: 6 LEEHLGISFQQKALLKEAFTHSS--YVNEHRKQRLSDNERLEFLGDAVLELAVSQYLYRN 63
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
+ EG ++ LR+++V + ++ F + + ++R AD EAF
Sbjct: 64 NKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQTGGRERPAILADAFEAF 123
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+Y+D+G + F + FP+L + D KS+LQ+ + D I
Sbjct: 124 LGALYLDQGFDNVLDFLNIHVFPKLTTGAFSHAM-DYKSQLQEFVQQHK-------DQKI 175
Query: 404 -YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y++IE GP++++ + V + + TG + ++AE AAK AL
Sbjct: 176 EYRIIEEKGPSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNAL 222
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ D+ EG + RAAIV L + A+ + F+ G
Sbjct: 48 GDAVLELAVSQYLYRNNKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQT 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
E +A+ FEA +GAL+LD G D
Sbjct: 108 GGRERPAILADAFEAFLGALYLDQGFD 134
>gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168]
gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168]
Length = 236
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 12/224 (5%)
Query: 238 VIFNHIRLLARVFTTRSMGY--TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
+ FN I LL + T +S + ++ L N+RLEFLGD+VL ++ S YLY +FPE++EG
Sbjct: 19 IRFNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEGE 78
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDK 351
L+ +R+ +V++ + ++G+ + + + ++R AD LEA +GA+Y+D+
Sbjct: 79 LAKMRAYIVSSSHLACKARELGLGKYILMGKGEELNGGRERESILADTLEAVIGAIYLDQ 138
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G F ++ D K+ LQ+ G +I Y +I G
Sbjct: 139 GFNTITDLLINFFKDDVKKLDQGNIIRDYKTYLQEFIQK-----DGSCEIK-YNIINEYG 192
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P +++ + V V + L + TG S ++AE AAK AL I
Sbjct: 193 PDHNKKFEVGVKVNGKELGRGTGFSKKEAEQKAAKDALSNLGEI 236
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +L+ FP+ EG LA RA IV + HLA A+ +GL ++L G +L
Sbjct: 55 GDSVLSIVISTYLYKNFPEYNEGELAKMRAYIVSSSHLACKARELGLGKYILMGKGEELN 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQ 199
E + +A+ EA++GA++LD G + + + +KD+ + Q
Sbjct: 115 GGRERESILADTLEAVIGAIYLDQGFNTITDLLIN-FFKDDVKKLDQ 160
>gi|424782431|ref|ZP_18209278.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
gi|421959751|gb|EKU11359.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
Length = 222
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 24/231 (10%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM-GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
++ LE G F +LL T +S+ G N N+RLEFLGD V+ L+ DYL++
Sbjct: 1 MRNLEEKLGYKFKDEKLLKTALTHKSVKGGAN-----NERLEFLGDAVMDLVIGDYLFHK 55
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVD-----LKMKDRADLLEA 342
F EG LS LR++LVN ++ + + + + N I+P + K +D EA
Sbjct: 56 FSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLIN-ISPAEEHNGGRAKASILSDAFEA 114
Query: 343 FLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+GA+Y++ G +A F +P + + + +++ +L Q
Sbjct: 115 LMGAIYLESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFA--------- 165
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+IP Y ++ GP + + + +A+ +++A G S ++AE AAK AL+
Sbjct: 166 EIPKYVLVGSKGPDHKKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALE 216
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F + EG L+ RAA+V + A LAK + L + + +
Sbjct: 40 GDAVMDLVIGDYLFHKFSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHN 99
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+++ FEALMGA++L+ G D
Sbjct: 100 GGRAKASILSDAFEALMGAIYLESGFDA 127
>gi|78186018|ref|YP_374061.1| ribonuclease III [Chlorobium luteolum DSM 273]
gi|90101633|sp|Q3B6L3.1|RNC_PELLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|78165920|gb|ABB23018.1| RNAse III [Chlorobium luteolum DSM 273]
Length = 276
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 13/214 (6%)
Query: 243 IRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
+ L A T RSM + SNQRLEFLGD+VL LI S+YLY FPE EG LS
Sbjct: 45 LELYATALTHRSMVHDTTAPEITRSNQRLEFLGDSVLGLIISEYLYRRFPEGTEGELSSY 104
Query: 300 RSSLVNNRTQSVVCN--DIGMPFF--ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEA 355
R+ +VN ++ + D+G+ + ++ AD EA GA+Y+D+G++A
Sbjct: 105 RAKIVNGKSLAGFARNLDLGIHLIIGESADQQRIRTSTSTLADAFEALTGAIYLDRGLDA 164
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNS 415
+F + + + N+ KS+L + + + P+Y V+ G +
Sbjct: 165 VREFIEEQIIDSPAFEAMVSTENNHKSRLIEHTQSHQL------PPPVYTVLSEEGAEHE 218
Query: 416 RSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+++T+ V RL + T + AE AA+ A+
Sbjct: 219 KTFTIEVSCNGRRLGRGTALRKKDAEQLAAEEAM 252
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S +L+ FP+ EG L++YRA IV + LA A+ + L ++ +D
Sbjct: 77 GDSVLGLIISEYLYRRFPEGTEGELSSYRAKIVNGKSLAGFARNLDLGIHLIIGESADQQ 136
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-----VADQVFSSVLYK 191
+A+ FEAL GA++LD G+D + +Q+ S ++
Sbjct: 137 RIRTSTSTLADAFEALTGAIYLDRGLDAVREFIEEQIIDSPAFE 180
>gi|430760142|ref|YP_007215999.1| Ribonuclease III [Thioalkalivibrio nitratireducens DSM 14787]
gi|430009766|gb|AGA32518.1| Ribonuclease III [Thioalkalivibrio nitratireducens DSM 14787]
Length = 243
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 15/186 (8%)
Query: 246 LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVN 305
L + T RS G + N+R+EFLGD VL L+ +D LY P+ EG L+ LR++LVN
Sbjct: 37 LEQALTHRSAGSRH-----NERMEFLGDAVLGLVIADALYERLPDAPEGDLTRLRAALVN 91
Query: 306 NRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCK 361
+ + G+ + + + R AD LEA +GA Y G EA F
Sbjct: 92 RTALAELARGAGLEGALTLGQGERKSGGQRRESILADTLEALIGATYHAAGFEAARAFVL 151
Query: 362 VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVA 421
+ RL + + DPK++LQ+ L G +P Y+V+E GP + R + V
Sbjct: 152 RLYAERLAHLPSAESLKDPKTRLQEW------LQGRGEALPEYRVLEVSGPDHRRQFVVE 205
Query: 422 VYFKNE 427
V+ ++
Sbjct: 206 VWLPSQ 211
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ PD EG L RAA+V LA LA+ GLE + G
Sbjct: 58 GDAVLGLVIADALYERLPDAPEGDLTRLRAALVNRTALAELARGAGLEGALTLGQGERKS 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-------------KDNEVRFKQ 199
+ +A+ EAL+GA + G + A + F LY KD + R ++
Sbjct: 118 GGQRRESILADTLEALIGATYHAAGFEAA-RAFVLRLYAERLAHLPSAESLKDPKTRLQE 176
Query: 200 WMYYPQHPLQE------QEPDGDRQWV 220
W+ L E PD RQ+V
Sbjct: 177 WLQGRGEALPEYRVLEVSGPDHRRQFV 203
>gi|328952899|ref|YP_004370233.1| ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
Length = 231
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 108/233 (46%), Gaps = 20/233 (8%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITS 281
+ L +QL+Y F + R L + S Y G SN+RLEF GD VL L S
Sbjct: 7 TELERQLRY-------SFKNRRWLEQALVHSSYAYEFPLQGPSNERLEFFGDAVLSLFIS 59
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
D+L ++P+ EG LS R+SLVN R + + + + + + + + A
Sbjct: 60 DFLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQSGRRKPSVLA 119
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC-LTLRTLDG 396
D LEA L A+Y+D G A K+ F L D K+ LQ+ L+
Sbjct: 120 DALEAVLAAVYLDGGFAAARGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKV--- 176
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
P Y+V+ GP ++R++ V V+ ++ + G S +QA AA++AL
Sbjct: 177 ----TPTYRVVTATGPAHARTFEVEVWLADQPWGRGQGKSKKQAAQEAARLAL 225
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ S L +P EG L+ +RA++V +HLA +A+ + L + G +
Sbjct: 50 GDAVLSLFISDFLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQ 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+A+ EA++ A++LDGG A V
Sbjct: 110 SGRRKPSVLADALEAVLAAVYLDGGFAAARGV 141
>gi|433448711|ref|ZP_20411577.1| ribonuclease III [Weissella ceti NC36]
gi|429539638|gb|ELA07674.1| ribonuclease III [Weissella ceti NC36]
Length = 234
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 16/224 (7%)
Query: 238 VIFNHIRLLARVFTTRSMGYTNL---TLGSN-QRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F++ LL FT Y N +G++ QRLEFLGD V+Q T+ YL+ +PE E
Sbjct: 15 IRFDNESLLEEAFT--QANYINEHPDYVGNDYQRLEFLGDAVMQQSTAVYLFKRYPEWDE 72
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMYI 349
G L+ LR S+V R+ +++ ++ + + + + + R LL EAF+GA+Y+
Sbjct: 73 GRLTELRISMVQTRSFAILSRELHLDEYVRLGRGEELSGARKRDSLLEDIWEAFIGALYL 132
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D+G + F + F ++ Q + D KSKLQ+ G I K+ E
Sbjct: 133 DQGSDTVMDFLEQIMFKKIDEGFYEQ-FVDYKSKLQELLQQ-----KGAVTIKYAKIAEE 186
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
N++ +TVAV ++L G S + AE +AA+ A Q+
Sbjct: 187 RIENNNQLFTVAVTLDGQQLGTGQGTSTKAAEKDAARQAYQRLS 230
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q T+++LF +P+ +EG L R ++VQ + A L++ + L++++ G +L
Sbjct: 51 GDAVMQQSTAVYLFKRYPEWDEGRLTELRISMVQTRSFAILSRELHLDEYVRLGRGEELS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD-NEVRFKQWMYYPQHPLQE 210
+ + + +EA +GAL+LD G D +++K +E ++Q++ Y + LQE
Sbjct: 111 GARKRDSLLEDIWEAFIGALYLDQGSDTVMDFLEQIMFKKIDEGFYEQFVDY-KSKLQE 168
>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
Length = 243
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 26/240 (10%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYLY 285
L+ L S G+ FN + LL + S Y N G N+RLEFLGD VL+LI S+YLY
Sbjct: 13 LRDLAASLGISFNDLGLLHQALVHTS--YANEVKGGVEHNERLEFLGDAVLELIISEYLY 70
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+FPE EG L+ R+ LV + + + +G+ + + + ++R AD E
Sbjct: 71 RNFPELPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVSGGRERTSILADAFE 130
Query: 342 AFLGAMYIDKGMEACEQFC------KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
A +GA+Y+D G+ A F + R Y + D K+ LQ+
Sbjct: 131 AVIGAIYLDGGVSAATNFVLNHLHEDLALIWRGDYV-----FYDYKTVLQEVVQQ----- 180
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GE I Y+V+ GP +++++ V+V ++ L +G + ++AE NAAK ALQK +
Sbjct: 181 AGECKIS-YEVVAEYGPDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAAKEALQKLKKL 239
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ FP++ EG L RA +V LA A R+GL ++L G +
Sbjct: 57 GDAVLELIISEYLYRNFPELPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVS 116
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E +A+ FEA++GA++LDGG+ A + L++D
Sbjct: 117 GGRERTSILADAFEAVIGAIYLDGGVSAATNFVLNHLHED 156
>gi|427787085|gb|JAA58994.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 227
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA 60
M + NILLL+Q Y I +LS+C ++PM +H +F GHCLL++TG + DG F+ WA
Sbjct: 1 MGLGNILLLTQATCYTITLILSVCTVVPMAVHVSKFDGHCLLYTTGTFDSDDGHFIARWA 60
Query: 61 SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNN---FSQFITSI 103
S YC +T+ VG ++ +S+IQ+ RM ++++ G + S F+ S+
Sbjct: 61 SPFYCFFTLSVGGLMVAVSLIQLVRMSIFLYMGTDSSFLSAFLDSV 106
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNL 519
FGAW+S+ CWV V KLC YH+ +N+ +SM RER+ L
Sbjct: 168 FGAWSSWVCWVLQAVLCTRKLCLYHERENLMISMARERRLL 208
>gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
Length = 243
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 27/247 (10%)
Query: 221 EQSPLLKQLQYLEYSS-----GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGD 273
+QS ++K QY ++ G+ + H+ + + F+ S + L N+RLEFLGD
Sbjct: 4 KQSEMIKDFQY-QFDKKMKMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGD 62
Query: 274 TVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM 333
VL+L S YL++ +P EG+L+ +R+++V + + N I + I+ K + K
Sbjct: 63 AVLELTVSRYLFDKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQL--ILLGKGEEKT 120
Query: 334 KDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN--DPKSKLQ 385
R +D EAF+GA+Y+D+G+E +F + FP +++ N+ D K++ Q
Sbjct: 121 GGRTRPSLVSDAFEAFIGALYLDQGLEVVWKFAQKVIFPYVEH---NELIGVVDFKTQFQ 177
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ + D Y +I+ GP + R +T V +N+ +AK G + +++E AA
Sbjct: 178 EYIHSQSKGD------VTYHLIKEEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAA 231
Query: 446 KVALQKC 452
+ A K
Sbjct: 232 ESAYHKL 238
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA IV L A +I L +L G +
Sbjct: 61 GDAVLELTVSRYLFDKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKT 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+++ FEA +GAL+LD G++V + V++
Sbjct: 121 GGRTRPSLVSDAFEAFIGALYLDQGLEVVWKFAQKVIF 158
>gi|397670033|ref|YP_006511568.1| ribonuclease III [Propionibacterium propionicum F0230a]
gi|395142645|gb|AFN46752.1| ribonuclease III [Propionibacterium propionicum F0230a]
Length = 213
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 14/218 (6%)
Query: 244 RLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSL 303
+L FT RS + + + SN+RLEFLGD VLQ++ +++++ FP+ EG L+ LR+S+
Sbjct: 4 QLFELAFTHRSFAFEHGRIPSNERLEFLGDAVLQIVVTEHIFRSFPDLAEGQLAKLRASV 63
Query: 304 VNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQF 359
V++ + V + + + +++ D+ AD +EA +GA+++ G +A F
Sbjct: 64 VSSHALAEVARGLDLGELIRLGQGEINTGGADKTSILADTMEAVIGAIHMSCGADAAACF 123
Query: 360 CKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYT 419
R+ L + D K+ LQ+ C G EP P Y+++ GP + R +T
Sbjct: 124 VHALLDERIASSELKGHYTDYKTALQEYC----AHSGLEP--PRYEIVGE-GPDHQRIFT 176
Query: 420 VAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
+ + +S ++AE AA + C S+ P
Sbjct: 177 ATAMVGGKAVGSGVASSKKRAEQLAAH---EACRSLLP 211
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + + H+F FPD+ EG LA RA++V + LA +A+ + L + + G
Sbjct: 32 GDAVLQIVVTEHIFRSFPDLAEGQLAKLRASVVSSHALAEVARGLDLGELIRLGQGEINT 91
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA---------DQVFSSVL---YKDNEVRFKQW 200
+ +A+ EA++GA+ + G D A +++ SS L Y D + +++
Sbjct: 92 GGADKTSILADTMEAVIGAIHMSCGADAAACFVHALLDERIASSELKGHYTDYKTALQEY 151
Query: 201 MYY-----PQHPLQEQEPDGDR 217
+ P++ + + PD R
Sbjct: 152 CAHSGLEPPRYEIVGEGPDHQR 173
>gi|359687900|ref|ZP_09257901.1| ribonuclease III [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751524|ref|ZP_13307810.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
gi|418758724|ref|ZP_13314906.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384114626|gb|EIE00889.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274127|gb|EJZ41447.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
Length = 268
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 9/217 (4%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
G+ FN L F S N + N+RLEFLGD+VL L+ + YLY P +EG
Sbjct: 52 GLKFNKPSYLEIAFVHSSFRNENPSYKEDNERLEFLGDSVLGLVVAKYLYRTNPSANEGE 111
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGM 353
LS +++LV+ + + +G+ + + + + + A+L E+ +GA+Y+D+GM
Sbjct: 112 LSRKKATLVSTAMLNGLSEKLGLTSYVLLGKGEGQGGAQKKLGANLFESLVGAIYLDQGM 171
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
EA E+F ++ +E D KS LQ+ C L +P Y++++ VGP
Sbjct: 172 EAAEKFILEHLIDYIKNSDKVREATDYKSVLQEICQKKFKL------LPSYRLLKEVGPD 225
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ +++ V+V +++ A+ G + + AE +AAK L+
Sbjct: 226 HEKTFYVSVSIRDKFSAEGKGKNKKFAEQDAAKQLLK 262
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + +L+ P EG L+ +A +V L L++++GL ++L G
Sbjct: 88 GDSVLGLVVAKYLYRTNPSANEGELSRKKATLVSTAMLNGLSEKLGLTSYVLLGKGE--G 145
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
K AN FE+L+GA++LD G++ A++
Sbjct: 146 QGGAQKKLGANLFESLVGAIYLDQGMEAAEK 176
>gi|433655086|ref|YP_007298794.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433293275|gb|AGB19097.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 232
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 11/225 (4%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNHFPE 290
LE + G +FN+ +LL S + +G SN+RLEFLGD+VL +I S+YLY +
Sbjct: 10 LEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEYLYKSRSD 69
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGA 346
EG+LS RS +V + + +I + + + + ++R AD +EA + A
Sbjct: 70 LEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILADAMEALIAA 129
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D ++ F ++ + + D K+KLQ+ + G I IYK+
Sbjct: 130 IYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKM-----GSEKI-IYKL 183
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ GP +++ + + VY RL + G S ++AE AA AL K
Sbjct: 184 TDEYGPDHNKMFVIEVYVGGNRLGRGMGRSKKEAEQYAAMEALSK 228
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S +L+ D+EEG L+ YR+ IV LA A+ I L ++L G ++
Sbjct: 51 GDSVLSIIISEYLYKSRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
+ +A+ EAL+ A++LD + A +V S ++Y+D + + ++
Sbjct: 111 GGRNRESILADAMEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQE 169
>gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417974281|ref|ZP_12615102.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346329278|gb|EGX97576.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 230
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 11/189 (5%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
+R+EFLGD V+QL S+YL+ +P EG LS LR+++V + S + + +
Sbjct: 45 ERIEFLGDAVMQLCVSEYLFKRYPSLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLG 104
Query: 326 NPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++R+ D+ E+F+GA+Y+D+G + +F FP+L + D K
Sbjct: 105 KGEEKADARNRSSLLCDIFESFIGALYLDQGKDKVVEFISAVVFPKLDMGWFDH-LLDHK 163
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
++LQ+ G+ I YK+++ GP N ++YT+AVY +++ + G+S + AE
Sbjct: 164 TELQEYLQQ-----NGDCKIE-YKMLDEKGPDNDKTYTMAVYADGKKIGEGVGSSKKNAE 217
Query: 442 MNAAKVALQ 450
AA AL+
Sbjct: 218 QAAAYQALK 226
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +LF +P + EG L+ RAA+V + AK ++++ G +
Sbjct: 51 GDAVMQLCVSEYLFKRYPSLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FE+ +GAL+LD G D + S+V++
Sbjct: 111 DARNRSSLLCDIFESFIGALYLDQGKDKVVEFISAVVF 148
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
LE G F + +L+ T +S +N+RLEFLGD VL LI ++L++ FP+
Sbjct: 7 LERRLGYEFKNPQLIVEALTHKSYKKPY----NNERLEFLGDAVLDLIVGEFLFHKFPQS 62
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAM 347
EG LS +R+SLVN + + I + + + + + + + + LL EA +GA+
Sbjct: 63 DEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENNQGRSKPSLLSNAFEAVIGAI 122
Query: 348 YIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
Y++ G+E +PR+ L +++ K+ LQ+ + G PD Y
Sbjct: 123 YLEAGLENARSIVVRLLDETYPRIDLDTLCKDY---KTALQELT---QATHGVTPD---Y 173
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
++I GP + + + VAV E +A A G S + A+ AA++ALQK
Sbjct: 174 EMIGSSGPDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIALQK 220
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I LFH FP +EG L+ RA++V A LA+ I L ++ + +
Sbjct: 43 GDAVLDLIVGEFLFHKFPQSDEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
++N FEA++GA++L+ G++ A + +L
Sbjct: 103 QGRSKPSLLSNAFEAVIGAIYLEAGLENARSIVVRLL 139
>gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187]
gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187]
Length = 223
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 20/231 (8%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+L LE G F + LL R T RS G + N+RLEFLGD++L L+ ++ LY+
Sbjct: 4 KLSRLEQKLGYPFQNKDLLVRAITHRSAGSRH-----NERLEFLGDSILSLVIAEVLYHR 58
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLE 341
FP EG +S +R++LV +T + + + + + I+ P +LK AD +E
Sbjct: 59 FPNVSEGDMSRMRATLVREKTLAELAREFALGDYL-ILGPG-ELKSGGYRRESILADTVE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y+D ++ + RL E DPK++LQ+ L G +
Sbjct: 117 ALIGAIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEF------LQGRRRPL 170
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
P Y V + G +++ +TV + E G+S ++AE AA+ AL++
Sbjct: 171 PTYAVTDVKGEAHNQQFTVECAIDDIEAAFVGVGSSRRKAEQAAAERALEQ 221
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+H FP++ EG ++ RA +V+ + LA LA+ L D+++ G
Sbjct: 43 GDSILSLVIAEVLYHRFPNVSEGDMSRMRATLVREKTLAELAREFALGDYLILGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGID------------VADQVFSSVLYKDNEVRFKQW 200
+ +A+ EAL+GA++LD +D D + V KD + R +++
Sbjct: 103 GGYRRESILADTVEALIGAIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEF 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQGRRRPL 170
>gi|88812349|ref|ZP_01127599.1| ribonuclease III [Nitrococcus mobilis Nb-231]
gi|88790356|gb|EAR21473.1| ribonuclease III [Nitrococcus mobilis Nb-231]
Length = 226
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 16/220 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F+ LL R T RS N N+RLEFLGD+VL + + +++ + EG L
Sbjct: 13 GYRFSESTLLVRALTHRSAFGPN-----NERLEFLGDSVLNFVVAAEVFDRRKQAREGEL 67
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S LR+ LVN + + + ++ + + ++ + R +D LEA +GA+Y+D G
Sbjct: 68 SRLRAKLVNQASLADIARELALGEALRLGGGEMKAGGQRRDSILSDTLEAIVGAVYLDAG 127
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
C + + + RL+ +E DPK++LQ+ ++R +P Y+V+E G
Sbjct: 128 FAICREVIRRLYGNRLRELPSIRELKDPKTRLQEHLQSIRL------PLPEYRVLEIAGR 181
Query: 413 TNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
+++++ V E + NS +QAE AA LQ+
Sbjct: 182 AHAQTFQVECRIIGVETVTHGLANSRRQAEQKAAASMLQR 221
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + +F EG L+ RA +V LA +A+ + L + + G
Sbjct: 43 GDSVLNFVVAAEVFDRRKQAREGELSRLRAKLVNQASLADIARELALGEALRLGGGEMKA 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-------------KDNEVRFKQ 199
+++ EA++GA++LD G + +V LY KD + R ++
Sbjct: 103 GGQRRDSILSDTLEAIVGAVYLDAGFAICREVIRR-LYGNRLRELPSIRELKDPKTRLQE 161
Query: 200 WMYYPQHPLQE 210
+ + PL E
Sbjct: 162 HLQSIRLPLPE 172
>gi|332799147|ref|YP_004460646.1| ribonuclease 3 [Tepidanaerobacter acetatoxydans Re1]
gi|438002260|ref|YP_007272003.1| Ribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter acetatoxydans Re1]
gi|432179054|emb|CCP26027.1| Ribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 238
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLGDTVLQLITS 281
+QL L+ + G+ FN++ L + F S+ TN +NQRLEFLGD VL+L S
Sbjct: 8 FQQLMILQENIGIQFNNLNTLNQAFIHPSL--TNEKEKPYQENNQRLEFLGDAVLELAIS 65
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+YLY H+ EG ++ +R+ V + + + + + + + + + +++ A
Sbjct: 66 EYLYRHYDFLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENTGGREKVSILA 125
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQCCLTLRTLDG 396
D LEA +GA+YIDK + F + + + + EW D K+ LQ+ L+ D
Sbjct: 126 DTLEALIGAIYIDKNYKTTYDFI-IKNLEAIIFKAIQGEWGTDYKTDLQEL---LQKFD- 180
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D +Y V+ GP + + + V V +KN+ L G S +QAE NAAK AL +
Sbjct: 181 --EDKILYNVVNESGPDHDKLFCVEVVWKNKILGTGIGKSKKQAEQNAAKEALDR 233
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ + + EG + RA V LA +A+++ L D+++ + G +
Sbjct: 56 GDAVLELAISEYLYRHYDFLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENT 115
Query: 153 HEVELKHAMANCFEALMGALFLD 175
E +A+ EAL+GA+++D
Sbjct: 116 GGREKVSILADTLEALIGAIYID 138
>gi|337292610|emb|CCB90626.1| Ribonuclease 3 [Waddlia chondrophila 2032/99]
Length = 243
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
+E G F +LL+ FT RS + N N+RLE+LGD++L + ++YLY + P
Sbjct: 14 IEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYLPN 73
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV--DLKMKDR--ADLLEAFLGA 346
EG LS LRS LV + + + + + + + D + +D ADL E+ +GA
Sbjct: 74 TPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRDSILADLFESLIGA 133
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D GM+A F F ++ IL + K++LQ C P P+YKV
Sbjct: 134 IYLDGGMDAARLFLFKNFSKEIEE-ILKTPICNWKAQLQDYCQKKYR----HP--PLYKV 186
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ GP + + +T++V N+ + G S ++A+ AAK A +
Sbjct: 187 VSESGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSR 231
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + +L+ P+ EG L+ R+ +V+ +++ LE ++L G +
Sbjct: 55 GDSILGFLIAEYLYKYLPNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMN 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+A+ FE+L+GA++LDGG+D A
Sbjct: 115 DGRGRDSILADLFESLIGAIYLDGGMDAA 143
>gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 232
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 11/225 (4%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNHFPE 290
LE + G +FN+ +LL S + +G SN+RLEFLGD+VL +I S+YLY +
Sbjct: 10 LEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEYLYKSRSD 69
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGA 346
EG+LS RS +V + + +I + + + + ++R AD +EA + A
Sbjct: 70 LEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILADAMEALIAA 129
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D ++ F ++ + + D K+KLQ+ + G I IYK+
Sbjct: 130 IYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKM-----GSEKI-IYKL 183
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ GP +++ + + VY RL + G S ++AE AA AL K
Sbjct: 184 TDEYGPDHNKMFVIEVYVGENRLGRGMGRSKKEAEQYAAMEALSK 228
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S +L+ D+EEG L+ YR+ IV LA A+ I L ++L G ++
Sbjct: 51 GDSVLSIIISEYLYKSRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
+ +A+ EAL+ A++LD + A +V S ++Y+D + + ++
Sbjct: 111 GGRNRESILADAMEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQE 169
>gi|339634034|ref|YP_004725675.1| ribonuclease III [Weissella koreensis KACC 15510]
gi|420161377|ref|ZP_14668142.1| dsRNA-specific ribonuclease [Weissella koreensis KCTC 3621]
gi|420161514|ref|ZP_14668278.1| dsRNA-specific ribonuclease [Weissella koreensis KCTC 3621]
gi|338853830|gb|AEJ22996.1| ribonuclease III [Weissella koreensis KACC 15510]
gi|394745052|gb|EJF33948.1| dsRNA-specific ribonuclease [Weissella koreensis KCTC 3621]
gi|394745354|gb|EJF34238.1| dsRNA-specific ribonuclease [Weissella koreensis KCTC 3621]
Length = 231
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 16/226 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ FN ++LL T Y N G QRLEFLGD ++Q ++ YL+ ++P+
Sbjct: 14 GLQFNDLKLLEEALT--QANYINEHPGYQGRDYQRLEFLGDAIMQQSSAVYLFQNYPDWD 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG L+ LR +V R+ + + ++ + + + + + ++R DL EAF+GA++
Sbjct: 72 EGRLTELRILMVQTRSFAALSRELHLDKYVQLGHGEEMSGARNRDSLLEDLWEAFIGALF 131
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G +A + FF +++ ++ + D KSKLQ+ G +I K+ E
Sbjct: 132 LDQGQDAVMHLLDLVFFSKIKTGFYDR-FVDYKSKLQELLQK-----HGSVEINYEKIAE 185
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
N + +TVAV +++L G S ++AE AA+ A Q +
Sbjct: 186 EQIENNEQIFTVAVSVNDKKLGAGQGKSTKEAEKAAARDAYQSLTN 231
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q ++++LF +PD +EG L R +VQ + A L++ + L+ ++ HG ++
Sbjct: 51 GDAIMQQSSAVYLFQNYPDWDEGRLTELRILMVQTRSFAALSRELHLDKYVQLGHGEEMS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVLYKDNEVRFKQWMYYPQHPL 208
+ + +EA +GALFLD G D D VF S + RF + Q L
Sbjct: 111 GARNRDSLLEDLWEAFIGALFLDQGQDAVMHLLDLVFFSKIKTGFYDRFVDYKSKLQELL 170
Query: 209 QE 210
Q+
Sbjct: 171 QK 172
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 105/220 (47%), Gaps = 12/220 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
LE + GV + LL R T RS Y N L +N+RLEFLGD+VL L+ +D L+ + P+
Sbjct: 29 LERALGVSISR-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLFRNHPDL 87
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG L+ LR+++VN R + V +G + + + +D+ AD LEA +GA+
Sbjct: 88 PEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGTGGRDKTSILADTLEALIGAV 147
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y++ G++ + F + D K+ LQ+ E +P Y V
Sbjct: 148 YLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEE------ELGVPEYHVA 201
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKV 447
E GP + +++ V G S ++AE AA+
Sbjct: 202 ES-GPDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAEA 240
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + LF PD+ EG LA RAA+V + LA +A+ +G ++ G +
Sbjct: 68 GDSVLGLVVTDTLFRNHPDLPEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGT 127
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKD-------------NEV 195
+ +A+ EAL+GA++L+ G+D A + +F S++ K E+
Sbjct: 128 GGRDKTSILADTLEALIGAVYLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQEL 187
Query: 196 RFKQWMYYPQHPLQEQEPD 214
++ + P++ + E PD
Sbjct: 188 TAEEELGVPEYHVAESGPD 206
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 111/219 (50%), Gaps = 11/219 (5%)
Query: 235 SSGVIFNHIRLLARVFTTRSMG-YTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+SG++ ++LL FT RS T+ + +N+RLEFLGD+VL +I +D+L+ + P HE
Sbjct: 26 NSGIVCKDLQLLNLAFTHRSFANETSEVVDNNERLEFLGDSVLGVIVADWLFRNLPAKHE 85
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G S ++S +V+ + ++V + + + I + +++ AD LEA A Y+
Sbjct: 86 GDFSKIKSVVVSEDSLAMVARRLNIDQYLLIGKGEEYSGGREKKALLADCLEALFAACYL 145
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D G E + F P++Q + D K+ LQ+ + P Y +++
Sbjct: 146 DSGFETAKDFVMKYLEPQIQAVLKYDYHRDYKTSLQE------YMQKRWRKCPTYTLVKK 199
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP + ++ V V + A G + ++AE NAAK+A
Sbjct: 200 TGPEHDFTFFVEVKVNDLSFGPAKGRNKKEAEQNAAKLA 238
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + LF P EG + ++ +V LA +A+R+ ++ ++L G +
Sbjct: 64 GDSVLGVIVADWLFRNLPAKHEGDFSKIKSVVVSEDSLAMVARRLNIDQYLLIGKGEEYS 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E K +A+C EAL A +LD G + A
Sbjct: 124 GGREKKALLADCLEALFAACYLDSGFETA 152
>gi|403745343|ref|ZP_10954281.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
gi|403121571|gb|EJY55864.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
Length = 241
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 240 FNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
F + LL + FT S + + N+RLEFLGD VL+LI SD+LY+ +P EG L+
Sbjct: 16 FTDLNLLKQAFTHASYRNEHRKAHVEDNERLEFLGDAVLELIISDFLYHTYPRLPEGELT 75
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGM 353
+R+++V + V + F + + + R AD+ EAFLGA+YID+G+
Sbjct: 76 RMRAAIVCEPSLVVFARRLSFEQFIRLGRGEERSGGRSRPALLADVFEAFLGALYIDQGI 135
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKL--QQCCLTLRTLDGGEPDIPIYKVIEHVG 411
EA +F P L + ++ +L Q+ C +LR Y ++E G
Sbjct: 136 EAVRKFVHTHVIPHLADARVGVDYKTALQELVQQRLCTSLR-----------YTIVEERG 184
Query: 412 PTNSRSYTVAVYFKNERLAKATGNS 436
P ++R + V V +E G S
Sbjct: 185 PAHAREFVVQVELGDEVRGVGIGRS 209
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S L+H +P + EG L RAAIV L A+R+ E F+ G +
Sbjct: 50 GDAVLELIISDFLYHTYPRLPEGELTRMRAAIVCEPSLVVFARRLSFEQFIRLGRGEERS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FEA +GAL++D GI+
Sbjct: 110 GGRSRPALLADVFEAFLGALYIDQGIE 136
>gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
Length = 252
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
+E G F +LL+ FT RS + N N+RLE+LGD++L + ++YLY + P
Sbjct: 23 IEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYLPN 82
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV--DLKMKDR--ADLLEAFLGA 346
EG LS LRS LV + + + + + + + D + +D ADL E+ +GA
Sbjct: 83 TPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRDSILADLFESLIGA 142
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D GM+A F F ++ IL + K++LQ C P P+YKV
Sbjct: 143 IYLDGGMDAARLFLFKNFSKEIEE-ILKTPICNWKAQLQDYCQKKYR----HP--PLYKV 195
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ GP + + +T++V N+ + G S ++A+ AAK A +
Sbjct: 196 VSESGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSR 240
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + +L+ P+ EG L+ R+ +V+ +++ LE ++L G +
Sbjct: 64 GDSILGFLIAEYLYKYLPNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMN 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+A+ FE+L+GA++LDGG+D A
Sbjct: 124 DGRGRDSILADLFESLIGAIYLDGGMDAA 152
>gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum]
Length = 231
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYN 286
+ + L +SG F LL + T S + G S QRLEFLGD VL L+ SD LY+
Sbjct: 2 RTRRLRRASGHTFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYH 61
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM--PFFANIINPKVDLKMKDR--ADLLEA 342
FP EG LS + LV + + V +G+ + P D +++ D+ EA
Sbjct: 62 AFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEA 121
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+GA+++D G A +F K + R+ + DPK+ LQ+ G P
Sbjct: 122 VIGAIFLDGGHAAAAEFVKRNWTERMHK--PRRPLRDPKTVLQEWA------QGKGLPTP 173
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+Y+ +E GP + + VAV A+ G S + AE AA V +++
Sbjct: 174 VYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIER 222
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG-LEDFMLYAHGSDL 151
G++ + S L+H FP+ +EG L+ A +V+ + A +AK +G L+D L + G
Sbjct: 47 GDHVLGLVVSDMLYHAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSA 106
Query: 152 CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ K + + EA++GA+FLDGG ++ K N + + M+ P+ PL++
Sbjct: 107 DARLR-KSVLGDICEAVIGAIFLDGG-----HAAAAEFVKRN---WTERMHKPRRPLRD 156
>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
Length = 231
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 16/228 (7%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
K+L+ LE S F +LLA T RS N N+RLEFLGD++L + +D L+
Sbjct: 4 KELKILEKSIKYKFKDDKLLALAMTHRSHSGMN-----NERLEFLGDSILNFVVADLLFK 58
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
F + EG LS LRS LV S + N++ + F N+ ++ R AD EA
Sbjct: 59 KFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKSSGWRRPSILADAFEA 118
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+GA++ID GM++ +F + + ++ + + DPK+ LQ+ L + +P
Sbjct: 119 LIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEF------LQAQKVPLP 172
Query: 403 IYKVIEHVGPTNSRSYTVA-VYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y+VI G +++ +TV V K + + G S + AE AAK A+
Sbjct: 173 SYEVINVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAAKEAM 220
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + LF F D++EG L+ R+ +V+ + L+ L + + DF+ G
Sbjct: 44 GDSILNFVVADLLFKKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGI------------DVADQVFSSVLYKDNEVRFKQW 200
+A+ FEAL+GA+F+DGG+ D+ +++ +YKD + +++
Sbjct: 104 SGWRRPSILADAFEALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEF 163
Query: 201 MYYPQHPLQEQE 212
+ + PL E
Sbjct: 164 LQAQKVPLPSYE 175
>gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
Length = 237
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 19/231 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNH 287
L ++ +G+ F++ L+ T S + N NQRLEFLGD VL +I ++ L+
Sbjct: 17 LSKVKEKTGISFDNKNLIIEALTHPSFKHENPHFEYDNQRLEFLGDAVLNMIITEILFQR 76
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLE 341
+ E EG L+ R +V T + + I+ K + K R +DL E
Sbjct: 77 YKEASEGILTQKRIYMVKEETLYKKAKSLNLGDL--ILLGKGEEKQGGREKISILSDLFE 134
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AF+GA+Y+DKG E + F + F ++ + +W K+ LQ + E
Sbjct: 135 AFIGALYLDKGYEFTKNFVERIFREEIESVEMEIDW---KNLLQSQLMK-------EGKK 184
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
P Y V GP +++ + V ++ N ++A+ G + ++AE+ AAK+AL+K
Sbjct: 185 PSYIVTREEGPEHNKIFYVELWIDNNKIAEGEGKTKREAEIKAAKIALEKM 235
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
IT I LF + + EG L R +V+ + L AK + L D +L G + E
Sbjct: 69 ITEI-LFQRYKEASEGILTQKRIYMVKEETLYKKAKSLNLGDLILLGKGEEKQGGREKIS 127
Query: 160 AMANCFEALMGALFLDGG 177
+++ FEA +GAL+LD G
Sbjct: 128 ILSDLFEAFIGALYLDKG 145
>gi|425064814|ref|ZP_18467934.1| Ribonuclease III [Pasteurella multocida subsp. gallicida P1059]
gi|404384529|gb|EJZ80962.1| Ribonuclease III [Pasteurella multocida subsp. gallicida P1059]
Length = 225
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ + L+ L+ G FN LL + T RS + N+RLEFLGD +L I ++ L
Sbjct: 1 MTQNLERLQRQIGYHFNQPALLKQALTHRSAAVKH-----NERLEFLGDAILNFIIAEAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y+ FP+ +EG LS +R++LV T + + + + ++ ++ R AD +
Sbjct: 56 YHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+ +D + + K + +L+ DPK++LQ+ L G
Sbjct: 116 EAIIGAISLDSDLATTTKIVKHWYQAQLKQIQPGDNQKDPKTRLQE------YLQGKRLP 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P Y V+E G + +++TV Y KN +R +G S ++AE AA+ LQ
Sbjct: 170 LPTYNVVEIKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI + L+H FP EG L+ RA +V+ LA LA++ L D++ G
Sbjct: 43 GDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY--------KDNEVRFKQW 200
+ +A+C EA++GA+ LD + ++ + + L KD + R +++
Sbjct: 103 GGFRRESILADCVEAIIGAISLDSDLATTTKIVKHWYQAQLKQIQPGDNQKDPKTRLQEY 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQGKRLPL 170
>gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis]
Length = 266
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITS 281
++Q + + V F + +LL + FT S Y N N+RLEFLGD VL+L S
Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTIS 74
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR-- 336
+L+ +P EG L+ LR+++V + + +++ F +++ +M + R
Sbjct: 75 RFLFPKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDLVLLGKGEEMTGGRKRPA 131
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
AD+ EAF+GA+Y+D+G+E E F KV FP++ D KS+LQ+
Sbjct: 132 LLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFPHVM-DFKSQLQEYV----QR 186
Query: 395 DG-GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
DG G + YK+ GP ++R + V K E L G S ++AE +AA+ AL K
Sbjct: 187 DGKGSLE---YKISNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 65 GDAVLELTISRFLFPKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWM 201
+ +A+ FEA +GAL+LD G++ + ++ K N+ F M
Sbjct: 125 GGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFPHVM 174
>gi|357401981|ref|YP_004913906.1| ribonuclease 3 [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337768390|emb|CCB77103.1| Ribonuclease 3 [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 262
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 11/182 (6%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 39 LLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRVHPDLPEGQLAKLRAAVV 98
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +++ AD LEA +GA+Y+D+G++A +
Sbjct: 99 NSRALAEVARGLELGRFVRLGRGEEGTGGRNKASILADTLEAVIGAVYLDQGLDAASELV 158
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 159 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEAL------GVPEYLVTES-GPDHEKTFTA 211
Query: 421 AV 422
A
Sbjct: 212 AA 213
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ V PD+ EG LA RAA+V ++ LA +A+ + L F+ G +
Sbjct: 66 GDSVLGLVVTDTLYRVHPDLPEGQLAKLRAAVVNSRALAEVARGLELGRFVRLGRGEEGT 125
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 126 GGRNKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 185
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 186 TATEALGVPEYLVTESGPDHEKTFT 210
>gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107]
gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107]
Length = 225
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
Q LE G FN R L T RS G +N N+RLEFLGD++L + + L+
Sbjct: 7 QRLEQRLGYSFNDQRQLQLALTHRSHGASN-----NERLEFLGDSILNFLIGEALFLRLD 61
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLG 345
E EG +S LRS LV T + + ++G K +D AD +EA +G
Sbjct: 62 EAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKSGGHRRDSILADAVEAIIG 121
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y++ G++ C + + RL L+ DPKS+LQ+ R +P +P Y+
Sbjct: 122 AIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEYLQAQR-----QP-LPEYR 175
Query: 406 VIEHVGPTNSRSYTVAVYFK-NERLAKATGNSIQQAEMNAAKVALQ 450
V+E G +++ +T+ + ++ +A +S ++AE AA L+
Sbjct: 176 VVEVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQAAAAMLK 221
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ LF + EG ++ R+ +V+ LA LA+ L + ++ G
Sbjct: 44 GDSILNFLIGEALFLRLDEAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+A+ EA++GA++L+ G+D D + KD + R +++
Sbjct: 104 GGHRRDSILADAVEAIIGAIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEY 163
Query: 201 MYYPQHPLQE 210
+ + PL E
Sbjct: 164 LQAQRQPLPE 173
>gi|386389600|ref|ZP_10074414.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
gi|385695370|gb|EIG25932.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
Length = 222
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 16/227 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
QL+ L+ G F + L + T RS N N+RLEFLGD++L L++
Sbjct: 2 QLERLQKKLGYQFETLDYLTQALTHRSAASKN-----NERLEFLGDSILNFTIGKALFDK 56
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCN--DIG--MPFFANIINPKVDLKMKDRADLLEAF 343
FP+ +EG LS +R++LV +T +++ D+G M A + + AD +EA
Sbjct: 57 FPKANEGELSRMRATLVREQTLAIIARQFDLGDYMKLGAGELKSGGYRRESILADCIEAI 116
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ A+Y+DKGM+ Q + L DPK++LQ+ L G + +P
Sbjct: 117 IAAIYLDKGMDQAMQKVNDWYTTFLAEISPGDAQKDPKTRLQEF------LQGRKLPLPE 170
Query: 404 YKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
Y+V++ G +++++ V KN + + G S ++AE NAA+ L
Sbjct: 171 YEVMDIKGEAHNQTFKVTCKVKNVDEVFIGIGTSRRKAEQNAAEKVL 217
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F LF FP EG L+ RA +V+ Q LA +A++ L D+M G
Sbjct: 41 GDSILNFTIGKALFDKFPKANEGELSRMRATLVREQTLAIIARQFDLGDYMKLGAGELKS 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVL--------YKDNEVRFKQW 200
+ +A+C EA++ A++LD G+D A Q +++ L KD + R +++
Sbjct: 101 GGYRRESILADCIEAIIAAIYLDKGMDQAMQKVNDWYTTFLAEISPGDAQKDPKTRLQEF 160
Query: 201 MYYPQHPLQEQE 212
+ + PL E E
Sbjct: 161 LQGRKLPLPEYE 172
>gi|386286485|ref|ZP_10063675.1| ribonuclease III [gamma proteobacterium BDW918]
gi|385280635|gb|EIF44557.1| ribonuclease III [gamma proteobacterium BDW918]
Length = 225
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F LL T RS N N+R+EFLGD++L +I ++ LY FP+ EG L
Sbjct: 12 GYHFKDSELLTMAMTHRSFSAVN-----NERVEFLGDSLLNMIIAEALYLRFPDVDEGDL 66
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFF----ANIINPKVDLKMKDRADLLEAFLGAMYIDKG 352
S +RS LV+ +T + V + + F A N + AD +EA +GA+Y++ G
Sbjct: 67 SRIRSLLVSGKTLATVAVEFELGRFLRLGAGEKNSGGQRRASTLADAVEALIGAIYLESG 126
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
E C + F PRL DPK++LQ+ L G + +P Y+++E G
Sbjct: 127 FEVCRERVLAWFAPRLASLNPEVSHKDPKTRLQEF------LQGRKQPLPDYQLVETAGA 180
Query: 413 TNSRSYTVA 421
+ +++ V+
Sbjct: 181 DHQQTFIVS 189
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + L+ FPD++EG L+ R+ +V + LA +A L F+ G
Sbjct: 42 GDSLLNMIIAEALYLRFPDVDEGDLSRIRSLLVSGKTLATVAVEFELGRFLRLGAGEKNS 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV-ADQVFS-----------SVLYKDNEVRFKQW 200
+A+ EAL+GA++L+ G +V ++V + V +KD + R +++
Sbjct: 102 GGQRRASTLADAVEALIGAIYLESGFEVCRERVLAWFAPRLASLNPEVSHKDPKTRLQEF 161
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 162 LQGRKQPL 169
>gi|421862105|ref|ZP_16293932.1| dsRNA-specific ribonuclease [Paenibacillus popilliae ATCC 14706]
gi|410828360|dbj|GAC44369.1| dsRNA-specific ribonuclease [Paenibacillus popilliae ATCC 14706]
Length = 232
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 21/233 (9%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL-TLG---SNQRLEFLGDTVLQLITSDY 283
+L+ L+ V F + +LL + FT S Y N G N+RLEFLGD VL+L S++
Sbjct: 4 ELKQLQQKLNVHFRNRQLLKQAFTHAS--YVNEHRFGQHQDNERLEFLGDAVLELTVSEF 61
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L++H P EG L+ +R+S+V + N + + + + + R AD+
Sbjct: 62 LFHHCPTRPEGELTKMRASIVCEPSLVKFANQLQFGKYVLLGKGEELTGGRTRPALLADV 121
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCL--TLRTLDGG 397
E+F+GA+Y+D+G+E +F + FP++ + ND K++LQ+ L L+
Sbjct: 122 FESFIGALYLDQGLEPVREFLRKHIFPQIS-LDGKLQTNDYKTQLQELTQHHNLGALE-- 178
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y+++E GP + R + V+ L + G S ++AE AA +L+
Sbjct: 179 ------YRIVEERGPAHEREFVSEVHMGETCLGRGVGRSKKEAEQQAAAESLE 225
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LFH P EG L RA+IV L A ++ ++L G +L
Sbjct: 50 GDAVLELTVSEFLFHHCPTRPEGELTKMRASIVCEPSLVKFANQLQFGKYVLLGKGEELT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD G++
Sbjct: 110 GGRTRPALLADVFESFIGALYLDQGLE 136
>gi|378550823|ref|ZP_09826039.1| hypothetical protein CCH26_12079 [Citricoccus sp. CH26A]
Length = 256
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 246 LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVN 305
LA T RS Y + L +N+RLEFLGD VL + +D+LY P+ EG L+ +R+++V+
Sbjct: 37 LALALTHRSYAYEHGGLPTNERLEFLGDAVLGFVVTDHLYRTHPDLAEGDLAKMRAAVVS 96
Query: 306 NRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYIDKGMEACEQF 359
R + V IG+ A+I+ + + + + R AD LEA +GA Y+D G+EA
Sbjct: 97 TRALASVARSIGV--GASILLGEGEKRTRGRDKDSILADTLEALIGAAYVDLGLEAAHGL 154
Query: 360 CKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYT 419
P L D K+ +Q+ GG Y+ +E GP + + +T
Sbjct: 155 VHRFVLPLLDDASAMGAGTDWKTFIQEAAA------GGNLGAIEYR-MESTGPDHDKVFT 207
Query: 420 VAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
+ A A+G S ++AE AA + ++ +
Sbjct: 208 ATLVIGGVDYASASGGSKKEAERLAAADSWERVSAAA 244
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 77 VISVIQIYRMYMYIHKG-----------NNFSQFITSIHLFHVFPDIEEGGLATYRAAIV 125
+++ +R Y Y H G + F+ + HL+ PD+ EG LA RAA+V
Sbjct: 36 TLALALTHRSYAYEHGGLPTNERLEFLGDAVLGFVVTDHLYRTHPDLAEGDLAKMRAAVV 95
Query: 126 QNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 181
+ LA +A+ IG+ +L G + +A+ EAL+GA ++D G++ A
Sbjct: 96 STRALASVARSIGVGASILLGEGEKRTRGRDKDSILADTLEALIGAAYVDLGLEAA 151
>gi|449133751|ref|ZP_21769275.1| ribonuclease III [Rhodopirellula europaea 6C]
gi|448887627|gb|EMB17992.1| ribonuclease III [Rhodopirellula europaea 6C]
Length = 296
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 107/221 (48%), Gaps = 21/221 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL R T + G ++ L SN+RLEFLGD+VL L ++L+N +PE+ EG L
Sbjct: 72 GYEFQDLDLL-RSALTHASGASH-RLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDL 129
Query: 297 SLLRSSLVNNRTQSVV--------CNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
+ ++S++V+ R+ V C +G N PK + +D+ EA + A+Y
Sbjct: 130 TKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYPKSLV-----SDVFEAVIAALY 184
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
ID G E K + + Q + KS LQQ R L P+YK+I
Sbjct: 185 IDGGPEIVRDRLKQWLAEEVNLAVDTQGSGNHKSVLQQ--FAQRELSA----TPVYKLIR 238
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP + + + + + R A A GN+ + AE AA AL
Sbjct: 239 ETGPDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 279
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 18/140 (12%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF+ +P+ EG L ++A+V + +A ++GL+ ++ G K +++
Sbjct: 117 LFNEYPEYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNRSYP-KSLVSDV 175
Query: 165 FEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSP 224
FEA++ AL++DGG ++ R KQW+ + + + G+ + V
Sbjct: 176 FEAVIAALYIDGGPEIVRD------------RLKQWLAEEVNLAVDTQGSGNHKSV---- 219
Query: 225 LLKQLQYLEYSSGVIFNHIR 244
L+Q E S+ ++ IR
Sbjct: 220 -LQQFAQRELSATPVYKLIR 238
>gi|406876301|gb|EKD25900.1| hypothetical protein ACD_79C01447G0004 [uncultured bacterium]
Length = 252
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 118/233 (50%), Gaps = 21/233 (9%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN--LTLGSNQRLEFLGDTVLQLITS 281
PL K+LQY F LL + S N L L SN+RLEFLGDTVL+L+ S
Sbjct: 15 PLEKKLQY-------TFKDKALLLKSMLHSSFVNENPLLQLKSNERLEFLGDTVLELVIS 67
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN--PKVDLKMKDRA-- 337
+L ++ EG LSL RS+LV + + + + + F + K D ++
Sbjct: 68 HHLVSNLKNKDEGVLSLKRSALVRGSSLTKLSKQLRLHNFLIVGKGEKKEDGSKRESVLC 127
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYF-ILNQEWNDPKSKLQQCCLTLRTLDG 396
D LEA GA+Y+D G+EA + F P L+ ++ Q +N K++LQ+ LT
Sbjct: 128 DALEAVFGAIYLDGGLEAAREVILKIFSPLLKDLHVIEQHYN-FKNQLQE--LTQEKYQA 184
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
P YK+I GP + +S+ V+VY K+ + T SI++AE +K AL
Sbjct: 185 ----TPQYKLIGQEGPEHKKSFRVSVYLKDIFITYGTSTSIKKAEQICSKNAL 233
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S HL + +EG L+ R+A+V+ L L+K++ L +F++ G
Sbjct: 58 GDTVLELVISHHLVSNLKNKDEGVLSLKRSALVRGSSLTKLSKQLRLHNFLIVGKGEKKE 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV---LYKD--------------NEV 195
+ + + + EA+ GA++LDGG++ A +V + L KD E+
Sbjct: 118 DGSKRESVLCDALEAVFGAIYLDGGLEAAREVILKIFSPLLKDLHVIEQHYNFKNQLQEL 177
Query: 196 RFKQWMYYPQHPLQEQE-PDGDRQW 219
+++ PQ+ L QE P+ + +
Sbjct: 178 TQEKYQATPQYKLIGQEGPEHKKSF 202
>gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119]
gi|418620506|ref|ZP_13183310.1| ribonuclease III [Staphylococcus hominis VCU122]
gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119]
gi|374822636|gb|EHR86656.1| ribonuclease III [Staphylococcus hominis VCU122]
Length = 243
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 27/247 (10%)
Query: 221 EQSPLLKQLQYLEYSS-----GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGD 273
+QS ++K QY ++ G+ + H+ + + F+ S + L N+RLEFLGD
Sbjct: 4 KQSEMIKDFQY-QFDKKMKMLGLSYTHLDVYQQAFSHSSFINDFNMDRLAHNERLEFLGD 62
Query: 274 TVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM 333
VL+L S YL++ +P EG+L+ +R+++V + + N I + I+ K + K
Sbjct: 63 AVLELTVSRYLFDKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQL--ILLGKGEEKT 120
Query: 334 KDR------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN--DPKSKLQ 385
R +D EAF+GA+Y+D+G+E +F + FP +++ N+ D K++ Q
Sbjct: 121 GGRTRPSLVSDAFEAFIGALYLDQGLEVVWKFAQKVIFPYVEH---NELIGVVDFKTQFQ 177
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ + D Y +I+ GP + R +T V +N+ +AK G + +++E AA
Sbjct: 178 EYIHSQSKGD------VTYHLIKEEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAA 231
Query: 446 KVALQKC 452
+ A K
Sbjct: 232 ESAYHKL 238
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA IV L A +I L +L G +
Sbjct: 61 GDAVLELTVSRYLFDKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKT 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+++ FEA +GAL+LD G++V + V++
Sbjct: 121 GGRTRPSLVSDAFEAFIGALYLDQGLEVVWKFAQKVIF 158
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 11/196 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
+L + T RS Y N L +N+RLEFLGD+VL L+ +D LY + P+ EG L+ LR+++V
Sbjct: 30 ILEQALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDMPEGQLAKLRAAVV 89
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N R + V + + + + + +D+ AD LEA +G +Y+DKG++ +
Sbjct: 90 NMRALADVARSLDLGKYLRLGRGEEGTGGRDKSSILADTLEALIGTVYVDKGLDEAFRVV 149
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ +L +P Y V E GP +++S+
Sbjct: 150 HQLFDPLIERSASLGAGLDWKTSLQELT-AAESL-----GVPEYHVDES-GPDHAKSFVA 202
Query: 421 AVYFKNERLAKATGNS 436
V + K TG S
Sbjct: 203 TVRVGGKEYGKGTGRS 218
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V + LA +A+ + L ++ G +
Sbjct: 57 GDSVLGLVVTDTLYRNHPDMPEGQLAKLRAAVVNMRALADVARSLDLGKYLRLGRGEEGT 116
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLYKD-------------NEV 195
+ +A+ EAL+G +++D G+D V Q+F ++ + E+
Sbjct: 117 GGRDKSSILADTLEALIGTVYVDKGLDEAFRVVHQLFDPLIERSASLGAGLDWKTSLQEL 176
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD + +V
Sbjct: 177 TAAESLGVPEYHVDESGPDHAKSFV 201
>gi|365925213|ref|ZP_09447976.1| ribonuclease III [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266512|ref|ZP_14768974.1| ribonuclease III [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425208|gb|EJE98208.1| ribonuclease III [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 229
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 17/230 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYL 284
+Q L+ + F LL FT S Y N L +R+EFLGD V+QL S+YL
Sbjct: 6 VQKLKNDFEIDFKRPELLDEAFTHAS--YVNEHPKEHLKYYERIEFLGDAVMQLCVSEYL 63
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLL 340
Y +P EG LS LR+++V + S + + + + + R D+
Sbjct: 64 YRRYPGMSEGKLSRLRAAMVCEDSFSKFAKECNFDEYIRLGKGEEKANARQRPALLCDIF 123
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EAF+GA+Y D+G +A E+F FP+L + D K++LQ+ + GE
Sbjct: 124 EAFIGALYQDQGKKAVEEFIAKVVFPKLDLGWFDH-LLDHKTELQELL-----QEKGEVT 177
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
I Y + +GP + + YT+AV + L +G+S ++AE AA AL+
Sbjct: 178 I-TYDEVADLGPEHDKMYTMAVSADGKVLGTGSGHSKKEAEQVAANAALK 226
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +L+ +P + EG L+ RAA+V + AK ++++ G +
Sbjct: 51 GDAVMQLCVSEYLYRRYPGMSEGKLSRLRAAMVCEDSFSKFAKECNFDEYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + + FEA +GAL+ D G ++ + V++
Sbjct: 111 NARQRPALLCDIFEAFIGALYQDQGKKAVEEFIAKVVF 148
>gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum]
Length = 576
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 29/268 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ +F SI+LF +P EG L T R+ + N +L G+ + + Y+ D+
Sbjct: 188 GDSILKFCASIYLFFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSSTEDI- 246
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
K A+ EA+ GA+FL+ G + +Y D++ Y P +
Sbjct: 247 -----KKPKADVMEAMFGAIFLERGFKEVYRFIVHTVYNDHQ--------YSTLPTFKCN 293
Query: 213 PDGDRQWVE-QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
+RQ QS L +Q V + + LL T +G N S QRLEFL
Sbjct: 294 HSFERQLSSIQSKFLFDVQ-------VKISKVCLLEDAITC--LGDQNY---SYQRLEFL 341
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDL 331
GD+ L I S +LY FP +EG LS R+ LV N + + I + + + +P
Sbjct: 342 GDSYLDGIVSHFLYREFPLENEGFLSQARALLVRNEALAQISQRIKL--YQLVTDPSATF 399
Query: 332 KMKDRADLLEAFLGAMYIDKGMEACEQF 359
K DL EAF+G + +D +E ++
Sbjct: 400 STKRLGDLFEAFIGGVLLDNELEDTKKL 427
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
NQRLEFLGD++L+ S YL+ +P+ +EG L+ RS L NN CN+ G+
Sbjct: 181 NQRLEFLGDSILKFCASIYLFFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRY 240
Query: 325 INPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFIL 373
+ + D+K K +AD++EA GA+++++G + +F + QY L
Sbjct: 241 SSTE-DIK-KPKADVMEAMFGAIFLERGFKEVYRFIVHTVYNDHQYSTL 287
>gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243]
gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243]
gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
Length = 281
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
S +RLEFLGD++L I + ++ F + EG L+ ++ +LV+ + S V +G FA+
Sbjct: 46 SYERLEFLGDSILGAIVATIAFDRFHDLDEGGLTRIKVALVSGASLSDVAERLG---FAD 102
Query: 324 IINPKVDLKMKDRADL-------LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE 376
+I R L EA + A+++D G+EA E F + PR+ + +E
Sbjct: 103 VIVFGSSETGTGRRGLHSALENVYEAVVAALFLDGGIEAAEGFVRATLIPRMSA-DMARE 161
Query: 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
+PKS LQ+ DG P YK++E GP + R++ V+ ++ LA+ TG +
Sbjct: 162 PENPKSALQEKLQE----DG---ITPTYKLVETQGPPHDRTFVAQVFAGSQGLARGTGRT 214
Query: 437 IQQAEMNAAKVALQK 451
++AE AAK L +
Sbjct: 215 KKEAESQAAKSTLAR 229
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + F F D++EGGL + A+V L+ +A+R+G D +++
Sbjct: 54 GDSILGAIVATIAFDRFHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ- 211
L A+ N +EA++ ALFLDGGI+ A+ + L + P+ LQE+
Sbjct: 114 GRRGLHSALENVYEAVVAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKL 173
Query: 212 EPDG 215
+ DG
Sbjct: 174 QEDG 177
>gi|170029002|ref|XP_001842383.1| ribonuclease iii [Culex quinquefasciatus]
gi|167879433|gb|EDS42816.1| ribonuclease iii [Culex quinquefasciatus]
Length = 192
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 50/55 (90%)
Query: 109 FPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 163
FPD+EEGGLATYRAAIVQNQHLA LAK++ LE FMLYAH SDLCHE+EL+HA+ +
Sbjct: 29 FPDLEEGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHESDLCHELELRHALPD 83
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 57/76 (75%)
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQ 458
PDIPI KVIE PT++R Y +A YF+ +RLA + G+S QQAEMNAAK AL+ + P+
Sbjct: 82 PDIPICKVIECNSPTSTRVYMMADYFRGKRLACSNGHSTQQAEMNAAKQALEYSKDLFPE 141
Query: 459 LDHQKRVIAKSIELQK 474
LDHQKR IA+S++ QK
Sbjct: 142 LDHQKRTIAQSLKRQK 157
>gi|332296458|ref|YP_004438381.1| ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
Length = 228
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 11/227 (4%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G +F + + L T S Y + + +RLEFLGD VL+L+ S L+ +
Sbjct: 7 LSKLEEDLGYVFTNKKWLMTSLTHSSYSYNHPEVKDFERLEFLGDAVLKLVVSHKLFVLY 66
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
PE EG +S LR+ LV+++ + + + + + I + + +K + EA LGA+Y
Sbjct: 67 PEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSERTIKDSILSASFEAILGAVY 126
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D ++ C + +L + + D K+ LQ+ +L + +P YKVI+
Sbjct: 127 MDSSLKQCYKII-----DKLMNIKIEEYEEDSKTVLQELTQSLFGV------LPEYKVID 175
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
GP++S + V + N+ ATG+S +QA+ AAK AL +I
Sbjct: 176 VRGPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKALNDLRNI 222
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S LF ++P++ EG ++ RA +V ++HL +AK++ L++++L
Sbjct: 50 GDAVLKLVVSHKLFVLYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSERTI 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+ ++ FEA++GA+++D +
Sbjct: 110 KD----SILSASFEAILGAVYMDSSL 131
>gi|392529137|ref|ZP_10276274.1| ribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
gi|414083593|ref|YP_006992301.1| ribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412997177|emb|CCO10986.1| ribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 231
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 13/214 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L+ L+ G+ F ++ L FT S + + + N+R+EFLGD VL+L S YL++
Sbjct: 6 LKELKDKFGITFRNLSYLEEAFTHSSYVNEHRDCHIQDNERIEFLGDAVLELTVSRYLFD 65
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEA 342
H+P+ EG L+ LR+++V + S + G + + + + ++R DL E+
Sbjct: 66 HYPDLPEGKLTRLRATIVCEASLSQFAKEYGFDTYIRLGRGEERMNGRNRPALLCDLFES 125
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D+G+EA F + FP++ + D K+ LQ+ GE I
Sbjct: 126 FIGALYLDQGIEAVLDFLRQTIFPKIATGAFSHVM-DHKTNLQEWL-----QQNGEIVIE 179
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
Y +++ VGP + + + V V + + L K G +
Sbjct: 180 -YNLLDEVGPAHEKEFIVEVSAEGKVLGKGQGKT 212
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +PD+ EG L RA IV L+ AK G + ++ G +
Sbjct: 51 GDAVLELTVSRYLFDHYPDLPEGKLTRLRATIVCEASLSQFAKEYGFDTYIRLGRGEERM 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-------------VADQVFSSVLYKDNEVRFKQ 199
+ + + FE+ +GAL+LD GI+ +A FS V+ D++ ++
Sbjct: 111 NGRNRPALLCDLFESFIGALYLDQGIEAVLDFLRQTIFPKIATGAFSHVM--DHKTNLQE 168
Query: 200 WM 201
W+
Sbjct: 169 WL 170
>gi|421190069|ref|ZP_15647373.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB422]
gi|399970869|gb|EJO05159.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB422]
Length = 243
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F + LL FT + Y N G QRLEFLGD+V+QLI +DYL+ +P
Sbjct: 25 GIEFANQDLLFEAFTQGN--YLNEHPGEKGRDYQRLEFLGDSVMQLIVADYLFTRYPAWE 82
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMY 348
EG L+ +R ++V +++ S G + + + ++R LL EAF+GA+Y
Sbjct: 83 EGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLEDIWEAFIGALY 142
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI- 407
D+G +A F FFP + +E+ D KSKLQ+ G DI YKV
Sbjct: 143 KDQGTKAVFTFLNKAFFPAIDEGFF-EEFIDYKSKLQELLQK-----AGSVDIE-YKVEN 195
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
E + + V V+ ++ + +G SI+ AE AAK A Q
Sbjct: 196 EDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQDV 240
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +P EEG L R A+VQ++ +H A+ G ++ G +L
Sbjct: 62 GDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELS 121
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + +EA +GAL+ D G
Sbjct: 122 GARNRDSLLEDIWEAFIGALYKDQG 146
>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
Length = 222
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM-GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
++ LE G F +LL T +S+ G N N+RLEFLGD V+ L+ DYL++
Sbjct: 1 MRNLEEKLGYKFKDEKLLKTALTHKSVKGGAN-----NERLEFLGDAVMDLVIGDYLFHK 55
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVD-----LKMKDRADLLEA 342
F EG LS LR++LVN ++ + + + + N I+P + K +D EA
Sbjct: 56 FSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLIN-ISPAEEHNGGRAKASILSDAFEA 114
Query: 343 FLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+GA+Y++ G +A F +P + + + +++ +L Q
Sbjct: 115 LMGAIYLESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFA--------- 165
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
IP Y ++ GP + + + +A+ +++A G S ++AE AAK AL+
Sbjct: 166 QIPKYVLVGSKGPDHKKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALE 216
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F + EG L+ RAA+V + A LAK + L + + +
Sbjct: 40 GDAVMDLVIGDYLFHKFSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHN 99
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+++ FEALMGA++L+ G D
Sbjct: 100 GGRAKASILSDAFEALMGAIYLESGFDA 127
>gi|374708678|ref|ZP_09713112.1| ribonuclease III [Sporolactobacillus inulinus CASD]
Length = 242
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 132/255 (51%), Gaps = 35/255 (13%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQ----RL 268
P ++ + + K+L + F + LL + FT S Y N +Q RL
Sbjct: 2 PSSKKELSHEKEVTKRLHHFLDDFSFSFQNETLLKQAFTHSS--YVNEHRRESQDDYERL 59
Query: 269 EFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK 328
EFLGD VL+L+ S +L+ ++PE EG ++ LR+ ++VC + G+ FA+ ++ +
Sbjct: 60 EFLGDAVLELLISQHLFKNYPELSEGDMTKLRA--------AIVC-ETGLFQFASSLSFE 110
Query: 329 VDLKM---------KDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ 375
+ + + R AD+ EAF+GA+Y+D+G++ E+F + +PR+ +
Sbjct: 111 EMIFLGRGEEVTGGRKRPSLLADVFEAFVGALYLDQGLQEVERFLEKVVYPRISDGSFSH 170
Query: 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGN 435
D KS+LQ+ T++ + GE D Y++I GP + R +T V +E + K G+
Sbjct: 171 VM-DYKSQLQE---TVQRKNLGELD---YELISEKGPAHHREFTSHVLLNSEVIGKGKGH 223
Query: 436 SIQQAEMNAAKVALQ 450
S + +E +AA AL+
Sbjct: 224 SKKDSEQSAASKALR 238
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S HLF +P++ EG + RAAIV L A + E+ + G ++
Sbjct: 63 GDAVLELLISQHLFKNYPELSEGDMTKLRAAIVCETGLFQFASSLSFEEMIFLGRGEEVT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ +A+ FEA +GAL+LD G+ ++ V+Y
Sbjct: 123 GGRKRPSLLADVFEAFVGALYLDQGLQEVERFLEKVVY 160
>gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG-6]
gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6]
Length = 235
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 18/236 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYT----NLTLGSNQRLEFLGDTVLQLITSDYL 284
+ L+ G+ FN L R F RS + N SN+RLEFLGD VL +++ +L
Sbjct: 1 MDELQRQLGIRFNDEELFTRAFVHRSFIHEHPERNRPRESNERLEFLGDAVLNFLSAAWL 60
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y +FP+ EG L+ LR++LV T + + + I + ++R AD+
Sbjct: 61 YANFPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTPIARNRPALLADVF 120
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL--RTLDGGE 398
EA LGA+Y+D+G++A F F ++ + + D +++LQ+ + RT
Sbjct: 121 EALLGAIYLDQGLDAVRTFITPFFEHQIVVVLSGSDEVDYRTRLQEQAQSRFNRT----- 175
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
P Y++++ GP + R +T+ V R G S Q A AA+ AL + S
Sbjct: 176 ---PTYRMVDVSGPDHQREFTMEVVIDEVRYGVGVGTSKQAAAQAAAREALNRLES 228
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+++ L+ FPD EG L RAA+V+ LA A+ + L + + G D
Sbjct: 48 GDAVLNFLSAAWLYANFPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTP 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+A+ FEAL+GA++LD G+D
Sbjct: 108 IARNRPALLADVFEALLGAIYLDQGLDA 135
>gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4]
gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4]
Length = 237
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 14/211 (6%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
L + T RS Y + L N+RLEFLGD VL+L+ ++YLYN +P+ EG L+ +R+SLV
Sbjct: 20 LATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAYPDRPEGDLAKIRASLV 79
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR----ADLLEAFLGAMYIDKGMEACE 357
N + + ++G + ++ +D+ AD LEA G++Y+ G+E
Sbjct: 80 NTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLEAVFGSVYLTHGLETAR 139
Query: 358 QFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
+ RL D K+ LQ+ C +L Y+ I GP + ++
Sbjct: 140 GLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGR------SKARYE-ITSTGPDHDKT 192
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
++ V+ ++ L + TG + ++AE AA+ A
Sbjct: 193 FSAVVFVGDDPLGEGTGRTKKEAEQKAAEQA 223
>gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893]
gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893]
Length = 229
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 19/233 (8%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
P L+QLQ G F L T RS G N N+RLEFLGD+++ ++ ++Y
Sbjct: 5 PDLEQLQR---RIGYQFKTPERLLLALTHRSFGNQN-----NERLEFLGDSIVNMVIAEY 56
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
LY HF + EG LS LR+ +V T + + + + + + + ++ R AD
Sbjct: 57 LYLHFEKAREGQLSRLRARMVKGVTLAEIGREFELGKYLRLGSGEMKSGGFRRESILADA 116
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+E+ +GA+Y+D C + F RLQ L DPK++LQ+ L +
Sbjct: 117 VESIIGAIYLDSDFHTCREQVLRWFEVRLQKLDLQDTQKDPKTRLQEY------LQSRQF 170
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
+P Y VI G +++++ V+ + +R TGNS + AE AA+ AL++
Sbjct: 171 PLPRYDVISVDGEAHAQTFHVSCALPSLDRKTTGTGNSRRIAEQQAARNALKQ 223
>gi|408483604|ref|ZP_11189823.1| ribonuclease III [Pseudomonas sp. R81]
Length = 229
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F L+ T RS N N+RLEFLGD +L + + L+ F
Sbjct: 5 LSRLERQLGYTFKDQELMVLALTHRSFAGRN-----NERLEFLGDAILNFVAGEALFERF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS LR+ LV T +V+ G+ + + + ++ R AD LEA +
Sbjct: 60 PQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D GMEA ++ ++ L DPK++LQ+ L D+P Y
Sbjct: 120 GAIYLDAGMEAAKERVTAWLTSEIESLTLVDTNKDPKTRLQEF------LQSRGCDLPRY 173
Query: 405 KVIEHVGPTNSRSYTV--AVYFKNERLAKATGNSIQQAE 441
+V++ G + R + V + NE+ ++ G S + AE
Sbjct: 174 EVVDIQGEPHCRVFFVECEITLLNEK-SRGQGVSRRIAE 211
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ LF FP EG L+ RA +V+ + LA LA+ GL +++ G
Sbjct: 43 GDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+ +A+ EAL+GA++LD G++ A + ++ L + E
Sbjct: 103 GGFRRESILADALEALIGAIYLDAGMEAAKERVTAWLTSEIE 144
>gi|357040499|ref|ZP_09102286.1| Ribonuclease 3 [Desulfotomaculum gibsoniae DSM 7213]
gi|355356590|gb|EHG04376.1| Ribonuclease 3 [Desulfotomaculum gibsoniae DSM 7213]
Length = 246
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
+N+RLEFLGD VL+LI SDY Y FP EG L+ +R+ V + + V + + +
Sbjct: 45 NNERLEFLGDAVLELIISDYYYRSFPHKTEGELTKMRALTVCEPSLATVARRLELGRYLF 104
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + ++R AD EA LG++Y+D G+E + ++ Q D
Sbjct: 105 MGRGEERSGGRERPSLLADAFEALLGSVYLDAGLEEARRVVLQQLADIIEEVKSGQTVRD 164
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
K+ LQ+ L ++ D PI Y +I+ GP + + +T AV ++++RL G + +
Sbjct: 165 YKTDLQE-ILQRKSAD------PIHYFIIDEEGPDHDKIFTAAVEYRDKRLGWGRGRTKK 217
Query: 439 QAEMNAAKVALQK 451
+AE AAK+AL+K
Sbjct: 218 EAEQQAAKMALEK 230
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S + + FP EG L RA V LA +A+R+ L ++ G +
Sbjct: 53 GDAVLELIISDYYYRSFPHKTEGELTKMRALTVCEPSLATVARRLELGRYLFMGRGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
E +A+ FEAL+G+++LD G++ A +V
Sbjct: 113 GGRERPSLLADAFEALLGSVYLDAGLEEARRV 144
>gi|347525654|ref|YP_004832402.1| ribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284613|gb|AEN78466.1| ribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 230
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ + L FT S Y N L +R+EFLGD V+QL S+YL+ +P
Sbjct: 14 GINVKNAELFDEAFTHAS--YVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKRYPSLP 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG LS LR+++V + S + + + + ++R D+ E+F+GA+Y
Sbjct: 72 EGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKANARNRPSLLCDIFESFIGALY 131
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G + +F FP+L + D K++LQ+ G+ I YK+++
Sbjct: 132 LDQGKDKVVEFISAVVFPKLDMGWFDH-LLDHKTELQEYLQQ-----NGDCKIE-YKMLD 184
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GP N ++YT+AVY +++ + G+S + AE AA AL+
Sbjct: 185 EKGPDNDKTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +LF +P + EG L+ RAA+V + AK ++++ G +
Sbjct: 51 GDAVMQLCVSEYLFKRYPSLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + FE+ +GAL+LD G D + S+V++
Sbjct: 111 NARNRPSLLCDIFESFIGALYLDQGKDKVVEFISAVVF 148
>gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
Length = 213
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD VL+L S +L+ +P EG L+ LR+++V + + +++ F ++
Sbjct: 22 NERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDL 78
Query: 325 INPKVDLKM---KDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW 377
+ +M + R AD+ EAF+GA+Y+D+G+E E F KV FP++ +
Sbjct: 79 VLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM 138
Query: 378 NDPKSKLQQCCLTLRTLDG-GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
D KS+LQ+ DG G + YK+ GP ++R + V K E L G S
Sbjct: 139 -DFKSQLQEYV----QRDGKGSLE---YKITNEKGPAHNREFEAIVSLKGEPLGVGNGRS 190
Query: 437 IQQAEMNAAKVALQK 451
++AE +AA+ AL K
Sbjct: 191 KKEAEQHAAQEALAK 205
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 29 GDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 88
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ +A+ FEA +GAL+LD G++ + ++ K N+ F M + LQE
Sbjct: 89 GGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQ-LQE 146
>gi|421192049|ref|ZP_15649318.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB548]
gi|399969996|gb|EJO04302.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB548]
Length = 231
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F + LL FT + Y N G QRLEFLGD+V+QLI +DYL+ +P
Sbjct: 13 GIEFANQDLLFEAFTQGN--YLNEHPGEKGRDYQRLEFLGDSVMQLIVADYLFTRYPAWE 70
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMY 348
EG L+ +R ++V +++ S G + + + ++R LL EAF+GA+Y
Sbjct: 71 EGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLEDIWEAFIGALY 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI- 407
D+G +A F FFP + +E+ D KSKLQ+ G DI YKV
Sbjct: 131 KDQGTKAVFTFLNKAFFPAIDEGFF-EEFIDYKSKLQELLQK-----AGSVDIE-YKVEN 183
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
E + + V V+ ++ + +G SI+ AE AAK A Q
Sbjct: 184 EDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQDV 228
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +P EEG L R A+VQ++ +H A+ G ++ G +L
Sbjct: 50 GDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + +EA +GAL+ D G
Sbjct: 110 GARNRDSLLEDIWEAFIGALYKDQG 134
>gi|359786279|ref|ZP_09289415.1| ribonuclease III [Halomonas sp. GFAJ-1]
gi|359296393|gb|EHK60645.1| ribonuclease III [Halomonas sp. GFAJ-1]
Length = 230
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 20/220 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F LL T RS G N N+RLEFLGD+++ + ++ L+ FP+ EG L
Sbjct: 13 GHTFGDHSLLELAMTHRSYGGRN-----NERLEFLGDSIVNFVIAEALFQRFPQAREGQL 67
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S LR+ LV +T + + ++ + + ++ R AD +EA +GA+Y+D G
Sbjct: 68 SRLRARLVKGQTLAELAREMAFGECLRLGSGEMKSGGHRRESILADAVEAVIGAIYLDAG 127
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ + + RL+ L DPK++LQ+ L + +P Y+V+ G
Sbjct: 128 MDTVRERVMAWYAERLESISLQDTQKDPKTRLQEF------LQSRQAALPRYEVVSVKGE 181
Query: 413 TNSRSYTVAVYFKNERLAKAT---GNSIQQAEMNAAKVAL 449
+++++TV Y + L++ T G S + AE AA+ AL
Sbjct: 182 AHAQTFTVECYI--DLLSEHTTGKGPSRRHAEQQAAEEAL 219
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + LF FP EG L+ RA +V+ Q LA LA+ + + + G
Sbjct: 43 GDSIVNFVIAEALFQRFPQAREGQLSRLRARLVKGQTLAELAREMAFGECLRLGSGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-VADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ +A+ EA++GA++LD G+D V ++V + + + + P+ LQE
Sbjct: 103 GGHRRESILADAVEAVIGAIYLDAGMDTVRERVMAWYAERLESISLQDTQKDPKTRLQE 161
>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
Length = 221
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
Q L+YS F + L+ T +S ++ N+RLEFLGD+VL L+ ++Y+Y+ +P
Sbjct: 7 QVLDYS----FKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYP 62
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLG 345
E EG LS ++S LV+ + +++ + + + + + R +L EA LG
Sbjct: 63 EVEEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLG 122
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D G E+ + + L + +D KS LQ+ +P Y+
Sbjct: 123 AVYLDGGFESVKNIINKWISTQ----SLTEVSSDYKSTLQEIVQKKY------KSVPEYE 172
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
VI+ VGP + + +TV V + L + G + + AE +AAK AL+
Sbjct: 173 VIQTVGPEHEKIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNALE 217
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 48/94 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + +++ +P++EEG L+ ++ +V +L A + L ++ G
Sbjct: 45 GDSVLGLVAAEYIYSKYPEVEEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAAT 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFS 186
+ ++N EA++GA++LDGG + + +
Sbjct: 105 GGRTRESILSNAMEAVLGAVYLDGGFESVKNIIN 138
>gi|341821059|emb|CCC57393.1| ribonuclease 3 [Weissella thailandensis fsh4-2]
Length = 232
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 19/236 (8%)
Query: 225 LLKQLQY-LEYSSGVIFNHIRLLARVFTTRSM-----GYTNLTLGSNQRLEFLGDTVLQL 278
+ KQLQ L + FN ++LL T + GYT G QRLEFLGD ++Q
Sbjct: 1 MFKQLQADLAKEHHIHFNDLKLLEEALTQANYINEHPGYTG---GDYQRLEFLGDAIMQQ 57
Query: 279 ITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR-- 336
T+ YL+ FP EG L+ LR S+V R + + ++ + + + + ++R
Sbjct: 58 STAVYLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDS 117
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAF+GA+++D+G + F K F ++ +Q + D KSKLQ+
Sbjct: 118 LLEDLWEAFIGALFLDQGQKVVMDFLKEIMFVKIDEGFYDQ-FVDYKSKLQEFLQR---- 172
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
G I K+ E N + +T+ V + LA G S + AE AA+ A Q
Sbjct: 173 -HGTVKISYEKLDERAISNNEQVFTIQVSVDGKPLATGEGKSTKDAEKAAARKAYQ 227
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q T+++LF FP+ +EG L R ++VQ + A L++ + L+ ++ G +L
Sbjct: 51 GDAIMQQSTAVYLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ + +EA +GALFLD G V +++ K +E + Q++ Y + LQE
Sbjct: 111 GARNRDSLLEDLWEAFIGALFLDQGQKVVMDFLKEIMFVKIDEGFYDQFVDY-KSKLQE 168
>gi|348028526|ref|YP_004871212.1| ribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945869|gb|AEP29219.1| ribonuclease III [Glaciecola nitratireducens FR1064]
Length = 225
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 122/233 (52%), Gaps = 20/233 (8%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
+P ++ + L+Y+ F + LL + FT RS + N+RLEFLGD VL ++ ++
Sbjct: 2 NPYIRLNKVLDYT----FENKALLEQAFTHRSAAKIH-----NERLEFLGDAVLGMVVAE 52
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
LY FPE EG L+ +RSSLV T +++ + F + + ++ R AD
Sbjct: 53 LLYQQFPEQPEGKLTRMRSSLVKGDTLAMIAKEHDFGAFLKLGSGEMKSGGHRRSSTLAD 112
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
++EA +GA++++ G++A + F R++ N++ D K++LQ+ L +
Sbjct: 113 VVEAVIGAIFLESGIDAAKNTIVKLFASRIEKLDPNRQIKDNKTQLQEF------LQSRQ 166
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAK-ATGNSIQQAEMNAAKVALQ 450
+P Y+V+ G +++++ V + ++ G S +QAE NAAK L+
Sbjct: 167 LPLPNYEVVLISGKDHAQTFEVDCTVEPLNTSQIGKGKSRRQAEQNAAKQTLE 219
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+ FP+ EG L R+++V+ LA +AK F+ G +A+
Sbjct: 54 LYQQFPEQPEGKLTRMRSSLVKGDTLAMIAKEHDFGAFLKLGSGEMKSGGHRRSSTLADV 113
Query: 165 FEALMGALFLDGGIDVAD----QVFSSVL--------YKDNEVRFKQWMYYPQHPL 208
EA++GA+FL+ GID A ++F+S + KDN+ + ++++ Q PL
Sbjct: 114 VEAVIGAIFLESGIDAAKNTIVKLFASRIEKLDPNRQIKDNKTQLQEFLQSRQLPL 169
>gi|336395264|ref|ZP_08576663.1| ribonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 202
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 11/200 (5%)
Query: 257 YTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDI 316
+ L +G +RLEFLGD VL++ S YL+ +PE EG L+ LRS +V + + +I
Sbjct: 10 HKGLGIGDYERLEFLGDAVLEINISRYLFEKYPELPEGKLTRLRSDIVRTDSFARFAKEI 69
Query: 317 GMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFI 372
+ + I + + R D+ EAF GA+Y+D+G E +F K +P +
Sbjct: 70 QIDKYLLIGKGEEKQGARQRHTLLEDIFEAFNGALYLDQGNEVVNEFLKKVVYPHIDSGE 129
Query: 373 LNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKA 432
+++ D K+ LQ+ + GE +I YKVI+ GP + + + V + + L+K
Sbjct: 130 FSED-TDFKTHLQE-----KLQQSGEVEID-YKVIDEEGPDHDKKFKVELIANGKILSKG 182
Query: 433 TGNSIQQAEMNAAKVALQKC 452
G S + AE AAK AL +
Sbjct: 183 LGYSKKHAEQMAAKRALDEL 202
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 102 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 161
S +LF +P++ EG L R+ IV+ A AK I ++ ++L G + + +
Sbjct: 34 SRYLFEKYPELPEGKLTRLRSDIVRTDSFARFAKEIQIDKYLLIGKGEEKQGARQRHTLL 93
Query: 162 ANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ FEA GAL+LD G +V ++ V+Y
Sbjct: 94 EDIFEAFNGALYLDQGNEVVNEFLKKVVY 122
>gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188]
gi|404320756|ref|ZP_10968689.1| ribonuclease III [Ochrobactrum anthropi CTS-325]
gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188]
Length = 234
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 22/226 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
LE +G F +++ L R T S+ + + +RLEFLGD VL L ++ L++ FP+
Sbjct: 11 LEERTGHRFLNLKRLDRALTHSSVQAP--SRANYERLEFLGDRVLGLTVAEMLFDEFPDA 68
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK-------MKDRADLLEAFL 344
EG LS+ ++LVN T + + ++IG+ AN+I+ D+K + RAD++EA +
Sbjct: 69 SEGELSVRLNALVNAETCAAIADEIGL---ANLIHTGSDIKSLNDKRLLNVRADVVEALI 125
Query: 345 GAMYIDKGMEACEQFCKVCFFPR-LQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+Y+D G+EA F K + R LQ + D K++LQ+ + P
Sbjct: 126 ATIYLDGGLEAVRPFVKRYWEKRSLQTGAARR---DAKTELQEWAHQQGNVH------PS 176
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y +I GP + + V V K G S + AE NAA+ L
Sbjct: 177 YAIISRTGPDHDPLFAVEVTVKGFATETGEGRSKRIAEQNAAEAML 222
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDL--CHEVELKHAMA 162
LF FPD EG L+ A+V + A +A IGL + L GSD+ ++ L + A
Sbjct: 61 LFDEFPDASEGELSVRLNALVNAETCAAIADEIGLAN--LIHTGSDIKSLNDKRLLNVRA 118
Query: 163 NCFEALMGALFLDGGIDV 180
+ EAL+ ++LDGG++
Sbjct: 119 DVVEALIATIYLDGGLEA 136
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 16/237 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTL--GSNQRLEFLGDTVLQLITSDYLY 285
QL+ LE G F + +LL T S ++ + G QRLEFLGD VL L ++ L+
Sbjct: 2 QLEELEKKMGYAFKNPQLLEEALTHPSFFVESIRVNKGDFQRLEFLGDAVLGLAVTEKLF 61
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMK--DRADLLE 341
FP EG L+ LR+ LV+ + + + +IG K + K + A+ LE
Sbjct: 62 QLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLANALE 121
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ----EWNDPKSKLQQCCLTLRTLDGG 397
+ +GA+Y+D G + + F F P + E + K LQ+ T
Sbjct: 122 SVIGALYLDGGWDRAKSFIFELFNPLFMELEKDPMRFVEHENSKGLLQEFLQKKGT---- 177
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
++PIY+++ G +++ Y V V +KN+ L K +G S ++AE+ AAK A +K S
Sbjct: 178 --ELPIYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAKEAFEKLVS 232
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 104 HLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMAN 163
LF +FP +EG L RA +V ++L LA + + ++ G + +AN
Sbjct: 59 KLFQLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLAN 118
Query: 164 CFEALMGALFLDGGIDVA 181
E+++GAL+LDGG D A
Sbjct: 119 ALESVIGALYLDGGWDRA 136
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 106/231 (45%), Gaps = 22/231 (9%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F LL R T S GS QRLEFLGD VL L +D LY F
Sbjct: 28 LGVLEERIGHSFADQNLLTRALTHTSKATGRG--GSYQRLEFLGDRVLGLAVADRLYAAF 85
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR------ADLL 340
P+ EG LS + LV T + V ++G ++I + ++ R AD+
Sbjct: 86 PDADEGDLSRRLAGLVRRETCAAVAASWEVG----PHLILGQGEVMGGGRRNQTILADVC 141
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA LGA+Y+D G EA + F P + D KS LQ+ + R+L
Sbjct: 142 EAILGAIYLDAGFEAARVIVEAHFHP--AEPMAAHRGRDAKSALQEWAMG-RSL-----P 193
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
IP+Y V+E GP ++ + +AV + G S + AE AA+ +++
Sbjct: 194 IPVYAVVERTGPDHAPRFRIAVQVEGLEPGHGEGTSKRVAEQEAARALMER 244
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + L+ FPD +EG L+ A +V+ + A +A + ++ G +
Sbjct: 69 GDRVLGLAVADRLYAAFPDADEGDLSRRLAGLVRRETCAAVAASWEVGPHLILGQGEVMG 128
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ EA++GA++LD G + A
Sbjct: 129 GGRRNQTILADVCEAILGAIYLDAGFEAA 157
>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
Length = 249
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 17/222 (7%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ FN+ +LL + FT S Y N N+RLEFLGD VL+L S +LY +P E
Sbjct: 29 IKFNNEKLLRQAFTHSS--YVNEHRKKPYEDNERLEFLGDAVLELTVSQFLYKKYPTMSE 86
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G L+ LR+++V + N++ + + ++R AD+ EAF+GA+Y+
Sbjct: 87 GELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVFEAFIGALYL 146
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D+G+E + +P++ + D KS+LQ+ L R G Y +++
Sbjct: 147 DQGLEPVLSILEENVYPKINSGAFSHVM-DFKSQLQE--LVQRDSAG----TIEYGILQE 199
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP ++R + V E L TG S ++AE +AA++AL+K
Sbjct: 200 KGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMALEK 241
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ +P + EG L RAAIV L A + + +L G +L
Sbjct: 65 GDAVLELTVSQFLYKKYPTMSEGELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E +A+ FEA +GAL+LD G++ + +Y
Sbjct: 125 GGRERPALLADVFEAFIGALYLDQGLEPVLSILEENVY 162
>gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
Length = 223
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 10/192 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDI--GMPFF 321
+N+RLEFLGD VL LI +YLY FP+ +EG LS +R+SLVN + + N+I G +
Sbjct: 35 NNERLEFLGDAVLNLIVGEYLYKKFPQSNEGDLSKIRASLVNETGFTKLANEIKLGDYIY 94
Query: 322 ANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+I + + K +D E+ +GA+Y++ G+E + L+ ++D
Sbjct: 95 LSIAEERNKGRTKASILSDAFESIMGAIYLESGLETLKPIILTLLEKSYDKINLDVLFSD 154
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
K+ LQ+ IP YK+ GP + + + V+++ N+ +A G S +
Sbjct: 155 YKTALQEIT------QAEFGSIPDYKIEGSYGPDHKKEFEVSIWINNQCYGQAIGKSKKL 208
Query: 440 AEMNAAKVALQK 451
A+ AK+AL K
Sbjct: 209 AQQAVAKIALDK 220
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I +L+ FP EG L+ RA++V LA I L D++ + +
Sbjct: 43 GDAVLNLIVGEYLYKKFPQSNEGDLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 191
+++ FE++MGA++L+ G++ + ++L K
Sbjct: 103 KGRTKASILSDAFESIMGAIYLESGLETLKPIILTLLEK 141
>gi|410633417|ref|ZP_11344063.1| ribonuclease III [Glaciecola arctica BSs20135]
gi|410147132|dbj|GAC20930.1| ribonuclease III [Glaciecola arctica BSs20135]
Length = 228
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 27/235 (11%)
Query: 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
PL K+L Y F + + T RS G + N+RLEFLGD +L ++ +
Sbjct: 9 PLYKRLGY-------TFADEANIVKALTHRSAGKQH-----NERLEFLGDAILGMVIAKG 56
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
LY FP+ EG L+ +RSSLV T + V + + + ++ R AD
Sbjct: 57 LYQRFPKQPEGKLTRMRSSLVKGDTLAEVAREFELGELLLLGPGELKSGGFRRDSILADA 116
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA +GA+Y++ GM+ CE F PRL+ D K++LQ+ L +
Sbjct: 117 VEAIIGAIYLEAGMDKCESLILEWFGPRLKALDPEAVSKDDKTRLQEY------LQSNKH 170
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT---GNSIQQAEMNAAKVALQK 451
+P+Y+V E G ++ +++ V E L KA GNS ++AE AAK A +K
Sbjct: 171 PLPLYEVTEIKGKSHDQTFYVECNV--EGLKKAVIGKGNSRRRAEQKAAKQAFEK 223
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ FP EG L R+++V+ LA +A+ L + +L G
Sbjct: 45 GDAILGMVIAKGLYQRFPKQPEGKLTRMRSSLVKGDTLAEVAREFELGELLLLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF------------SSVLYKDNEVRFKQW 200
+A+ EA++GA++L+ G+D + + + KD++ R +++
Sbjct: 105 GGFRRDSILADAVEAIIGAIYLEAGMDKCESLILEWFGPRLKALDPEAVSKDDKTRLQEY 164
Query: 201 MYYPQHPL 208
+ +HPL
Sbjct: 165 LQSNKHPL 172
>gi|328957311|ref|YP_004374697.1| ribonuclease III [Carnobacterium sp. 17-4]
gi|328673635|gb|AEB29681.1| ribonuclease III [Carnobacterium sp. 17-4]
Length = 245
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 13/227 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L L+ ++F+ + L FT S + NL L N+R+EFLGD VL+L S +LY
Sbjct: 20 LTQLKTKFDLVFHDLSYLEEAFTHSSYVNEHRNLELKDNERIEFLGDAVLELTVSRFLYE 79
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEA 342
+P EG L+ LR+++V + S + F + + + + R DL E+
Sbjct: 80 LYPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERMNGRKRPALLCDLFES 139
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D+G+++ F FP+++ + D K+ LQ+ GE I
Sbjct: 140 FIGALYLDQGIDSVLSFLDQTIFPKIKSGAFSHVM-DHKTNLQEFLQQ-----KGEIGID 193
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y++++ +GP + +++ V V + + L + G + + AE AA+ AL
Sbjct: 194 -YQLVDEIGPAHQKAFVVEVLAEGQVLGQGQGKTKKAAEQVAAENAL 239
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+ ++P++ EG L RA IV L+ AK + F+ G +
Sbjct: 65 GDAVLELTVSRFLYELYPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERM 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ + + + FE+ +GAL+LD GID
Sbjct: 125 NGRKRPALLCDLFESFIGALYLDQGID 151
>gi|258539823|ref|YP_003174322.1| ribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|385835475|ref|YP_005873249.1| ribonuclease III [Lactobacillus rhamnosus ATCC 8530]
gi|418070824|ref|ZP_12708099.1| ribonuclease III [Lactobacillus rhamnosus R0011]
gi|423078842|ref|ZP_17067519.1| ribonuclease III [Lactobacillus rhamnosus ATCC 21052]
gi|257151499|emb|CAR90471.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|355394966|gb|AER64396.1| ribonuclease III [Lactobacillus rhamnosus ATCC 8530]
gi|357540244|gb|EHJ24261.1| ribonuclease III [Lactobacillus rhamnosus R0011]
gi|357549130|gb|EHJ30978.1| ribonuclease III [Lactobacillus rhamnosus ATCC 21052]
Length = 231
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 17/206 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ + LL FT S Y N L L N+RLEFLGD VL+L SDYLY FP+
Sbjct: 15 GIEFHDLSLLDEAFTHSS--YVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRKFPDKP 72
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG L+ +R++ V S + + + + + R DL EAF GA+Y
Sbjct: 73 EGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAFNGALY 132
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G EA +F K FP++ + + D K+ LQ+ G+ I +Y +++
Sbjct: 133 LDQGREANIKFAKQIIFPKIDAGEFSAD-QDHKTALQETLQQ-----NGDVAI-VYHLLD 185
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATG 434
GP + R + V V + L G
Sbjct: 186 EKGPAHERQFHVDVEVEGRVLGTGFG 211
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FPD EG L RAA VQ + +K + ++ G +
Sbjct: 52 GDAVLELTVSDYLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ + + FEA GAL+LD G ++ ++F + + +P+ E
Sbjct: 112 GARQRLTLLEDLFEAFNGALYLDQG-------------REANIKFAKQIIFPKIDAGEFS 158
Query: 213 PDGDRQWVEQSPL 225
D D + Q L
Sbjct: 159 ADQDHKTALQETL 171
>gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
Length = 232
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 238 VIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F RLL + FT S Y N G N+RLEFLGD VLQL+ S++L+ +P E
Sbjct: 15 IRFRQPRLLRQAFTHTS--YVNEHRGKPIEDNERLEFLGDAVLQLLVSEHLFLTYPNRPE 72
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G L+ +R+S+V + + + +G+ + + L + R ADL EAF+GA+Y+
Sbjct: 73 GELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQLGGRHRPALLADLFEAFVGAVYL 132
Query: 350 DKGMEACEQFCKVCFFPRLQY--FILNQEWNDPKSKLQQCCL--TLRTLDGGEPDIPIYK 405
D+G++ F FP+++ +L +++ KSKLQ+ TL T++ Y+
Sbjct: 133 DQGLDRVRLFLTERIFPQIEENGSLLVKDF---KSKLQEKAQHGTLGTVE--------YR 181
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ E GP + R + V V ++ G + ++AE +A+ A
Sbjct: 182 IAEERGPAHDREFVVEVRIGDQPYGIGVGRTKKEAEQRSAEAA 224
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S HLF +P+ EG L RA+IV LA A +GL +L G +
Sbjct: 51 GDAVLQLLVSEHLFLTYPNRPEGELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQL 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-----VADQVF------SSVLYKDNEVRFKQWM 201
+A+ FEA +GA++LD G+D + +++F S+L KD + + ++
Sbjct: 111 GGRHRPALLADLFEAFVGAVYLDQGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKA 170
Query: 202 YYPQ------HPLQEQEPDGDRQWV 220
+ +E+ P DR++V
Sbjct: 171 QHGTLGTVEYRIAEERGPAHDREFV 195
>gi|403378845|ref|ZP_10920902.1| hypothetical protein PJC66_03345 [Paenibacillus sp. JC66]
Length = 232
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 25/222 (11%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS--NQRLEFLGDTVLQLITSDYL 284
++ L+ + G+ F++++LL + FT S N GS N+RLEFLGD VL+L S+YL
Sbjct: 3 REFTQLQSALGIEFHNLKLLKQAFTHSSYVNENRVSGSKDNERLEFLGDAVLELTVSEYL 62
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------AD 338
Y+ FP EG L+ LR+S+V S+V + F ++ K + R AD
Sbjct: 63 YDIFPNRSEGELTKLRASIVCE--PSLVTFAEQLQFGRYVLLGKGEELTGGRSRPALLAD 120
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRL----QYFILNQEWNDPKSKLQQCCLTLRTL 394
+ E+F+GA+Y+D+G+E + F + FP+L + IL D K++LQ+ +
Sbjct: 121 VFESFIGALYLDQGLEVVKAFLQKHMFPKLSADGKPRIL-----DYKTQLQEY------I 169
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
I Y+++E GP + + + V L + TG S
Sbjct: 170 QQHGMGILEYRIVEEKGPAHEKEFVAEVGMGERLLGQGTGRS 211
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +FP+ EG L RA+IV L A+++ ++L G +L
Sbjct: 50 GDAVLELTVSEYLYDIFPNRSEGELTKLRASIVCEPSLVTFAEQLQFGRYVLLGKGEELT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+A+ FE+ +GAL+LD G++V
Sbjct: 110 GGRSRPALLADVFESFIGALYLDQGLEV 137
>gi|199597132|ref|ZP_03210564.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
gi|258508646|ref|YP_003171397.1| ribonuclease III [Lactobacillus rhamnosus GG]
gi|385828307|ref|YP_005866079.1| ribonuclease III [Lactobacillus rhamnosus GG]
gi|199591936|gb|EDZ00011.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
gi|257148573|emb|CAR87546.1| Ribonuclease III [Lactobacillus rhamnosus GG]
gi|259649952|dbj|BAI42114.1| ribonuclease III [Lactobacillus rhamnosus GG]
Length = 231
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 13/204 (6%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G+ F+ + LL FT S + L L N+RLEFLGD VL+L SDYLY FP+ EG
Sbjct: 15 GIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRKFPDKPEG 74
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ +R++ V S + + + + + R DL EAF GA+Y+D
Sbjct: 75 DLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAFNGALYLD 134
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G EA +F K FP++ + + D K+ LQ+ G+ I +Y +++
Sbjct: 135 QGREANIKFAKRIIFPKIDAGEFSAD-QDHKTALQETLQQ-----NGDVAI-VYHLLDEK 187
Query: 411 GPTNSRSYTVAVYFKNERLAKATG 434
GP + R + V V + L G
Sbjct: 188 GPAHERQFHVDVEVEGHVLGTGFG 211
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FPD EG L RAA VQ + +K + ++ G +
Sbjct: 52 GDAVLELTVSDYLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ + + FEA GAL+LD G ++ ++F + + +P+ E
Sbjct: 112 GARQRLTLLEDLFEAFNGALYLDQG-------------REANIKFAKRIIFPKIDAGEFS 158
Query: 213 PDGDRQWVEQSPL 225
D D + Q L
Sbjct: 159 ADQDHKTALQETL 171
>gi|418576384|ref|ZP_13140530.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325446|gb|EHY92578.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 236
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 27/238 (11%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLI 279
Q+ K++Q L + FN + L + F+ S + L N+RLEFLGD VL+L
Sbjct: 6 QNKFEKKMQEL----NLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELT 61
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--- 336
S YL++ +PE EG+L+ +R+++V + + N I + I+ K + K R
Sbjct: 62 VSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDL--ILLGKGEEKTGGRTRP 119
Query: 337 ---ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLT 390
+D EAF+GA+Y+D+G+EA QF + FP ++ + E + D K++ Q+
Sbjct: 120 SLVSDAFEAFVGALYLDQGLEAVWQFSEQIIFP----YVEDDELDGVVDFKTQFQEYVHR 175
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
D Y++I GP + R +T V + + +A+ G + +++E AA+ A
Sbjct: 176 QNKGD------VTYRLINEEGPAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERA 227
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA IV L A +I L D +L G +
Sbjct: 54 GDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+++ FEA +GAL+LD G++ Q +++
Sbjct: 114 GGRTRPSLVSDAFEAFVGALYLDQGLEAVWQFSEQIIF 151
>gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212]
gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212]
Length = 237
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 103/230 (44%), Gaps = 19/230 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F LL T RS +L N+RLEFLGD +L + S +Y HFPE EGHL
Sbjct: 22 GYCFTQSHLLQTALTHRSH-----SLPHNERLEFLGDAILNCVISGIIYKHFPELPEGHL 76
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S LR++ VN + S + ++ M + ++ R AD EA LGA+Y+D
Sbjct: 77 SRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSILADTFEALLGAIYLDSD 136
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
E + P +Q L DPK+ LQ+ L + +P Y V+ G
Sbjct: 137 YAQVETVVMAIYLPLIQNIDLESPAKDPKTLLQE------FLQSQKLSLPEYLVVTTSGK 190
Query: 413 TNSRSYTVAVYFKNERLAKA-TGNSIQQAEMNAAKVALQKCPSICPQLDH 461
+ + + V + A G + + AE AAK+A +K IC Q H
Sbjct: 191 AHKQKFKVECVISTLNIRTAGEGTNRRSAEQVAAKLAYEK---ICLQHTH 237
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG---SDLCHEVELKHAM 161
++ FP++ EG L+ RA V + L+ +A + ++ + G S CH + +
Sbjct: 64 IYKHFPELPEGHLSRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSI---L 120
Query: 162 ANCFEALMGALFLDGGIDVADQVFSSV 188
A+ FEAL+GA++LD + V ++
Sbjct: 121 ADTFEALLGAIYLDSDYAQVETVVMAI 147
>gi|384082329|ref|ZP_09993504.1| ribonuclease III [gamma proteobacterium HIMB30]
Length = 226
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 15/198 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L L+ G F I L T RSMG ++ N+RLEFLGD+++ + ++ L+ +
Sbjct: 6 LDDLQSRLGYRFKDISHLESALTHRSMGPSH-----NERLEFLGDSIVNFVVAEALFRRY 60
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFL 344
PE EG L+ +R+SLV ++ S + +G K + +D AD +EA +
Sbjct: 61 PEAREGKLTRMRASLVRGQSLSQLARRLQLGETIRLGSGERKSGGRRRDSILADAMEAVI 120
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+++D GM AC+ L NQ DPK+ LQ+ + + ++P+Y
Sbjct: 121 GAVFLDGGMAACQSCIITWLESELAAVNPNQVDKDPKTALQEW------MQREKRNLPVY 174
Query: 405 KVIEHVGPTNSRSYTVAV 422
+V+E +GP + +++ V V
Sbjct: 175 RVLEVLGPAHQQTFRVQV 192
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + LF +P+ EG L RA++V+ Q L+ LA+R+ L + + G
Sbjct: 44 GDSIVNFVVAEALFRRYPEAREGKLTRMRASLVRGQSLSQLARRLQLGETIRLGSGERKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
+A+ EA++GA+FLDGG+
Sbjct: 104 GGRRRDSILADAMEAVIGAVFLDGGM 129
>gi|450159067|ref|ZP_21879220.1| ribonuclease III [Streptococcus mutans 66-2A]
gi|449241636|gb|EMC40257.1| ribonuclease III [Streptococcus mutans 66-2A]
Length = 231
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 121/228 (53%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+IF+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IIFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVMIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300]
gi|254807899|sp|B9DPJ2.1|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 242
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 17/217 (7%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
++H+ L + F+ S + L N+RLEFLGD VL+L S YL++ +PE EG+L+
Sbjct: 28 YDHLPLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLT 87
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYIDK 351
+R+++V + + N I + I+ K + K R +D EAF+GA+Y+D+
Sbjct: 88 KMRATIVCEPSLVIFANKIQLNEL--ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQ 145
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G++A QF + FP ++ L D K++ Q+ + L G Y++I+ G
Sbjct: 146 GLDAVWQFSEEVIFPHVEDDEL-MGVVDFKTQFQEL---IHRLSKGN---VTYRLIDEQG 198
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
P + R +T V + E +AK G + +++E AA+ A
Sbjct: 199 PAHHRLFTSEVLLEGEPVAKGQGRTKKESEQKAAEKA 235
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA IV L A +I L + +L G +
Sbjct: 62 GDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNELILLGKGEEKT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY---KDNEV 195
+++ FEA +GAL+LD G+D Q V++ +D+E+
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQGLDAVWQFSEEVIFPHVEDDEL 167
>gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|90101648|sp|Q49X17.1|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 244
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 27/238 (11%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLI 279
Q+ K++Q L + FN + L + F+ S + L N+RLEFLGD VL+L
Sbjct: 14 QNKFEKKMQEL----NLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELT 69
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--- 336
S YL++ +PE EG+L+ +R+++V + + N I + I+ K + K R
Sbjct: 70 VSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDL--ILLGKGEEKTGGRTRP 127
Query: 337 ---ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLT 390
+D EAF+GA+Y+D+G+EA QF + FP ++ + E + D K++ Q+
Sbjct: 128 SLVSDAFEAFVGALYLDQGLEAVWQFSEQIIFP----YVEDDELDGVVDFKTQFQEYVHR 183
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
D Y++I GP + R +T V + + +A+ G + +++E AA+ A
Sbjct: 184 QNKGD------VTYRLINEEGPAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERA 235
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P++ EG L RA IV L A +I L D +L G +
Sbjct: 62 GDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+++ FEA +GAL+LD G++ Q +++
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQGLEAVWQFSEQIIF 159
>gi|354584962|ref|ZP_09003853.1| ribonuclease III [Paenibacillus lactis 154]
gi|353191079|gb|EHB56588.1| ribonuclease III [Paenibacillus lactis 154]
Length = 233
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 28/223 (12%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITS 281
LKQLQ+ + + F + LL + FT S Y N S N+RLEFLGD VL+L S
Sbjct: 6 LKQLQHKLH---IQFRNAMLLKQAFTHAS--YVNEHRFSQNQDNERLEFLGDAVLELTVS 60
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
++LYN FP+ EG L+ LR+S+V S+V + + F ++ K + R
Sbjct: 61 EFLYNLFPDRPEGELTKLRASIVCE--PSLVQFALRLDFGRYVLLGKGEEMTGGRTRPAL 118
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCL--TLRT 393
AD+ E+F+GA+Y+D+G+EA QF FP + Q +D K++LQ+ ++
Sbjct: 119 LADVFESFVGALYLDQGLEAVRQFLHDHVFPSITVNGRPQ-MSDYKTELQELTQHHSMGA 177
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
L+ Y+++E GP + R + VY ++ L + +G S
Sbjct: 178 LE--------YRIVEERGPAHEREFVSEVYMGSKCLGRGSGRS 212
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+++FPD EG L RA+IV L A R+ ++L G ++
Sbjct: 51 GDAVLELTVSEFLYNLFPDRPEGELTKLRASIVCEPSLVQFALRLDFGRYVLLGKGEEMT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA-----DQVFSSV 188
+A+ FE+ +GAL+LD G++ D VF S+
Sbjct: 111 GGRTRPALLADVFESFVGALYLDQGLEAVRQFLHDHVFPSI 151
>gi|339480187|ref|ZP_08655846.1| ribonuclease III [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 236
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 34/231 (14%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ FN LL T R+ Y N QRLEFLGD+V+Q+ ++YL+ +P H
Sbjct: 15 GIRFNDETLLTEALTQRN--YLNEHPDDKGHDYQRLEFLGDSVMQVTVAEYLFKRYPNWH 72
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---------KDRADLL--- 340
EG L+ +R ++V R+ FA +++ +++ +DR LL
Sbjct: 73 EGQLTEMRIAMVQTRS---------FAHFARLVHLNEGIRLGKGEEMSGARDRDSLLEDI 123
Query: 341 -EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
EAF+GA+Y+D+G + QF F + ++ + D KS+LQ+ R G
Sbjct: 124 WEAFIGALYLDQGPKEVNQFLDKTLFAAIDTDFFDR-FIDFKSRLQE-----RLQVKGTV 177
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
DI E N++ + +V ++ LA+ TG SI+ AE AA+ AL+
Sbjct: 178 DIAYRTEKEEQLADNTQLFEASVSVDDKELARGTGKSIKDAEKAAARTALK 228
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF +P+ EG L R A+VQ + AH A+ + L + + G ++
Sbjct: 52 GDSVMQVTVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFARLVHLNEGIRLGKGEEMS 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + + +EA +GAL+LD G +Q L+
Sbjct: 112 GARDRDSLLEDIWEAFIGALYLDQGPKEVNQFLDKTLF 149
>gi|383790883|ref|YP_005475457.1| ribonuclease III [Spirochaeta africana DSM 8902]
gi|383107417|gb|AFG37750.1| ribonuclease III [Spirochaeta africana DSM 8902]
Length = 247
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 13/231 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN-LTLGSNQRLEFLGDTVLQLITSDYLY 285
K+LQ +G+ F LL + F+ RS N + +N++LEFLGD+VL L+T++YLY
Sbjct: 19 KELQGFLKHAGIRFKQYELLNQAFSHRSYANENPAAIRNNEKLEFLGDSVLGLVTAEYLY 78
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
PE EG L+ ++S +V+ + + + + + + I + + + AD +E
Sbjct: 79 QLLPEKQEGELARIKSFVVSEESLAGMALHLQVDRYLLIGKGEEQTGGRTKKAILADTME 138
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ-QCCLTLRTLDGGEPD 400
A +GA Y+D + +F + I N+ D K+ LQ Q T +T
Sbjct: 139 AVIGAYYLDSSLAHARRFILNYLAGEIDKVIHNKHRRDFKTLLQEQVQKTYKT------- 191
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y V++ GP + R++ V ++ R +G + ++AE AA++A ++
Sbjct: 192 YPRYSVVKKTGPDHDRTFWVEAVVQDRRFGPCSGKNKKEAERAAAQLAYEE 242
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ +T+ +L+ + P+ +EG LA ++ +V + LA +A + ++ ++L G +
Sbjct: 65 GDSVLGLVTAEYLYQLLPEKQEGELARIKSFVVSEESLAGMALHLQVDRYLLIGKGEEQT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKD-----NEV 195
K +A+ EA++GA +LD + A D+V + +D E
Sbjct: 125 GGRTKKAILADTMEAVIGAYYLDSSLAHARRFILNYLAGEIDKVIHNKHRRDFKTLLQEQ 184
Query: 196 RFKQWMYYPQHP-LQEQEPDGDRQ-WVE 221
K + YP++ +++ PD DR WVE
Sbjct: 185 VQKTYKTYPRYSVVKKTGPDHDRTFWVE 212
>gi|118587506|ref|ZP_01544930.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
gi|118431957|gb|EAV38699.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
Length = 243
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 12/192 (6%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
QRLEFLGD+V+QLI +DYL+ +P+ EG L+ +R ++V +++ S G + +
Sbjct: 56 QRLEFLGDSVMQLIVADYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLG 115
Query: 326 NPKVDLKMKDRADLL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++R LL EAF+GA+Y D+G +A F FFP + +E+ D K
Sbjct: 116 KGEELSGARNRDSLLEDIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFF-EEFIDYK 174
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVI-EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
SKLQ+ G DI YKV E + + V V+ ++ + +G SI+ A
Sbjct: 175 SKLQELLQK-----AGSVDIE-YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIA 228
Query: 441 EMNAAKVALQKC 452
E AAK A Q
Sbjct: 229 EKRAAKKAYQDV 240
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +PD EEG L R A+VQ++ +H A+ G ++ G +L
Sbjct: 62 GDSVMQLIVADYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELS 121
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + +EA +GAL+ D G
Sbjct: 122 GARNRDSLLEDIWEAFIGALYKDQG 146
>gi|433462279|ref|ZP_20419866.1| ribonuclease III [Halobacillus sp. BAB-2008]
gi|432188967|gb|ELK46109.1| ribonuclease III [Halobacillus sp. BAB-2008]
Length = 230
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 35/236 (14%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F I LL + FT S Y N N+RLEFLGD VL+L S YLY FP+ E
Sbjct: 13 IKFRDISLLEQAFTHSS--YVNEHRKTDREDNERLEFLGDAVLELGVSQYLYREFPDMAE 70
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---------KDR----ADLL 340
G L+ R+ S+VC ++ + FAN +N + + + ++R AD+
Sbjct: 71 GELTKFRA--------SIVC-EVSLVEFANELNFQELILLGKGEEMTGGRNRPALLADVF 121
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EAF+GA+Y+D+G + QF + +P+++ + D KS+LQ+ +
Sbjct: 122 EAFIGALYLDQGYDKVIQFLQTYVYPKVKKGAFSHAM-DFKSQLQEFIQRDKN-----SK 175
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
I Y+++E GP +SR + V +++ G + ++AE AA+ AL+ +I
Sbjct: 176 IE-YEIVEERGPAHSREFIAHVRIQDDIGGIGVGRTKKEAEQKAAQQALENHGAIS 230
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FPD+ EG L +RA+IV L A + ++ +L G ++
Sbjct: 49 GDAVLELGVSQYLYREFPDMAEGELTKFRASIVCEVSLVEFANELNFQELILLGKGEEMT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FEA +GAL+LD G D Q + +Y
Sbjct: 109 GGRNRPALLADVFEAFIGALYLDQGYDKVIQFLQTYVY 146
>gi|90416440|ref|ZP_01224371.1| ribonuclease III [gamma proteobacterium HTCC2207]
gi|90331639|gb|EAS46867.1| ribonuclease III [gamma proteobacterium HTCC2207]
Length = 225
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 21/235 (8%)
Query: 227 KQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
KQLQ L+Y F+ +LL + RS G N N+RLEFLGD VL + S +L+
Sbjct: 6 KQLQDRLQYQ----FSDPQLLTLALSHRSCGSNN-----NERLEFLGDAVLGMAISSFLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLE 341
FPE EG LS +RS +V + + + D+G K +D D +E
Sbjct: 57 QRFPEAREGDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSILGDTVE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A LGA+++D+G+ A E + F L L+ D K+ LQ+ L R G+P +
Sbjct: 117 ALLGAVFLDQGLVAVEACVQNWFGASLNTLTLDTPVKDAKTALQE-WLQAR----GKP-L 170
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+V++ G +SR +T++ + A+AT +S ++AE A+ ++K +I
Sbjct: 171 PEYRVVKTEGEDHSRLFTMSCKIDAVDETAEATASSRRKAEQLVAEKLVKKLENI 225
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 102 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 161
S LF FP+ EG L+ R+ +V+ + LA +A+++ L +L G +
Sbjct: 52 SSFLFQRFPEAREGDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSIL 111
Query: 162 ANCFEALMGALFLDGGIDVADQV----FSSVL--------YKDNEVRFKQWMYYPQHPLQ 209
+ EAL+GA+FLD G+ + F + L KD + ++W+ PL
Sbjct: 112 GDTVEALLGAVFLDQGLVAVEACVQNWFGASLNTLTLDTPVKDAKTALQEWLQARGKPLP 171
Query: 210 E 210
E
Sbjct: 172 E 172
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 21/223 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G ++ +LL + FT S Y N N+RLEFLGD VL+L S +L+ +P
Sbjct: 27 GFKIDNEKLLKQAFTHSS--YVNEHRRKPFEDNERLEFLGDAVLELTVSQFLFKKYPMMT 84
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGA 346
EG L+ LR+++V + N+ + F I+ K + R AD+ EA++GA
Sbjct: 85 EGELTKLRAAIVCEPSLVAFANE--LEFGKLILLGKGEEMTGGRERPALLADVFEAYIGA 142
Query: 347 MYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+Y+D+G+E +F + FP++ + D KS+LQ+ DG + Y+V
Sbjct: 143 LYLDQGIEKVIEFLEKVVFPKINAGAFSHVM-DFKSQLQELI----QRDG--TGMIEYRV 195
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
++ GP +++ + V E L TG S ++AE +AA++AL
Sbjct: 196 LQEKGPAHNKEFVSKVSLNGEELGVGTGKSKKEAEQHAAQMAL 238
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L A + +L G ++
Sbjct: 64 GDAVLELTVSQFLFKKYPMMTEGELTKLRAAIVCEPSLVAFANELEFGKLILLGKGEEMT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
E +A+ FEA +GAL+LD GI+ + V++
Sbjct: 124 GGRERPALLADVFEAYIGALYLDQGIEKVIEFLEKVVF 161
>gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5]
Length = 226
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 29/221 (13%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYL 284
L+ LE + G F LL + T S Y N LG N+RLEFLGD VL+LI+SD+L
Sbjct: 5 LKKLEQTIGYQFTAKSLLEQAMTHSS--YANEKHLGKLGCNERLEFLGDAVLELISSDFL 62
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y F + EG L+ R+S+V ++ + + G+P F + + + + R +D L
Sbjct: 63 YKKFRNNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVSDGL 122
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN-----DPKSKLQQCCLTLRTLD 395
E+ +GAMY+D G E + F + FILN + D K+ LQ+ +
Sbjct: 123 ESLIGAMYLDGGFEPAQAF--------VMKFILNDLEDKRIFYDSKTVLQEMV-----QE 169
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
GG + Y++++ GP +S+S+TV + + G++
Sbjct: 170 GGNHPVE-YRLLKEEGPDHSKSFTVEALINGKSMGTGIGHT 209
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I+S L+ F + +EG L RA++V + LA+ A+ GL +F+L G ++
Sbjct: 50 GDAVLELISSDFLYKKFRNNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMM 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ +++ E+L+GA++LDGG + A + N++ K+ Y + LQE
Sbjct: 110 GGRKRDSIVSDGLESLIGAMYLDGGFEPAQAFVMKFIL--NDLEDKRIFYDSKTVLQEMV 167
Query: 213 PDGDRQWVE 221
+G VE
Sbjct: 168 QEGGNHPVE 176
>gi|81428322|ref|YP_395322.1| ribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|90101628|sp|Q38XR8.1|RNC_LACSS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|78609964|emb|CAI55011.1| Ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K]
Length = 230
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 17/208 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ FN++ LL FT S Y N L L N+RLEFLGD V+++ S+YLY +P+
Sbjct: 14 GIEFNNLALLDEAFTHSS--YVNEHRELGLRDNERLEFLGDAVMEITVSEYLYKKYPDWP 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG L+ LR+++V ++ S + + + + + RA DL EAF GA++
Sbjct: 72 EGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKNGARARATLLEDLFEAFNGALF 131
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G +A F FP+++ + + D K+ LQ+ GE +I Y+++
Sbjct: 132 LDQGRDAVVDFVSQVIFPKIEAGEFSDQ-TDYKTNLQEFLQQ-----DGEIEID-YQLLA 184
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNS 436
VGP++ R + V V + L G +
Sbjct: 185 EVGPSHDRQFEVDVLVGDRVLGSGVGRN 212
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +PD EG L RAAIV + + +K + ++ G +
Sbjct: 51 GDAVMEITVSEYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKN 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA GALFLD G D S V++
Sbjct: 111 GARARATLLEDLFEAFNGALFLDQGRDAVVDFVSQVIF 148
>gi|338811275|ref|ZP_08623500.1| ribonuclease III [Acetonema longum DSM 6540]
gi|337276744|gb|EGO65156.1| ribonuclease III [Acetonema longum DSM 6540]
Length = 239
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 18/239 (7%)
Query: 226 LKQLQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
++ L L G+ F+ + L A + T+ + Y + + N+RLEFLGD VL L+ SDY
Sbjct: 7 IRTLSALSDKIGIRFSDLILFHQALIHTSYANEYKGVDIVDNERLEFLGDAVLDLVISDY 66
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
LY +FP EG L+ R+++V Q++ + + + +++ K +L R A
Sbjct: 67 LYRYFPRLPEGELTKARATIVCE--QTLAQHAVKLGIGEHLLLGKGELSSGGRERVSILA 124
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSKLQQCCLTLRTLDG 396
D EA +GA+Y+D G +F + F R + E+ ND K+ LQ+ + DG
Sbjct: 125 DAFEAVIGAIYLDAGFNCVFEFI-LKHFQRDLLMVERGEYNNDYKTILQERV--QKNTDG 181
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
Y+V+ GP + + + VAV RL G + +++E NAAK AL + ++
Sbjct: 182 KVQ----YEVVSERGPDHDKLFEVAVSVNGRRLGIGAGKTKKESEQNAAKQALGELHTL 236
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FP + EG L RA IV Q LA A ++G+ + +L G
Sbjct: 55 GDAVLDLVISDYLYRYFPRLPEGELTKARATIVCEQTLAQHAVKLGIGEHLLLGKGELSS 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
E +A+ FEA++GA++LD G +
Sbjct: 115 GGRERVSILADAFEAVIGAIYLDAGFN 141
>gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1]
gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1]
Length = 304
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
S +RLEFLGD++L I + ++ F + EG L+ ++ +LV+ + S V +G FA+
Sbjct: 69 SYERLEFLGDSILGAIVATIAFDRFHDLDEGGLTRIKVALVSGASLSDVAERLG---FAD 125
Query: 324 IINPKVDLKMKDRADL-------LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE 376
+I R L EA + A+++D G+EA E F + PR+ + +E
Sbjct: 126 VIVFGSSETGTGRRGLHSALENVYEAVVAALFLDGGIEAAEGFVRATLIPRMSA-DMARE 184
Query: 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
+PKS LQ+ DG P YK++E GP + R++ V+ ++ LA+ TG +
Sbjct: 185 PENPKSALQEKLQE----DG---ITPTYKLVETQGPPHDRTFVAQVFAGSQGLARGTGRT 237
Query: 437 IQQAEMNAAKVALQK 451
++AE AAK L +
Sbjct: 238 KKEAESQAAKSTLAR 252
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + F F D++EGGL + A+V L+ +A+R+G D +++
Sbjct: 77 GDSILGAIVATIAFDRFHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGT 136
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQ 211
L A+ N +EA++ ALFLDGGI+ A+ + L + P+ LQE+
Sbjct: 137 GRRGLHSALENVYEAVVAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEK 195
>gi|229552452|ref|ZP_04441177.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|229314189|gb|EEN80162.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
Length = 231
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 17/206 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ + LL FT S Y N L L N+RLEFLGD VL+L SDYLY FP+
Sbjct: 15 GIEFHDLSLLDEAFTHSS--YVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRKFPDKP 72
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG L+ +R++ V S + + + + + R DL EAF GA+Y
Sbjct: 73 EGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAFNGALY 132
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G EA +F K FP++ + + D K+ LQ+ G+ I +Y +++
Sbjct: 133 LDQGREANIKFTKQIIFPKIDAGEFSAD-QDHKTALQETLQQ-----NGDVAI-VYHLLD 185
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATG 434
GP + R + V V + L G
Sbjct: 186 EKGPAHERQFHVDVEVEGRVLGTGFG 211
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FPD EG L RAA VQ + +K + ++ G +
Sbjct: 52 GDAVLELTVSDYLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ + + FEA GAL+LD G ++ ++F + + +P+ E
Sbjct: 112 GARQRLTLLEDLFEAFNGALYLDQG-------------REANIKFTKQIIFPKIDAGEFS 158
Query: 213 PDGDRQWVEQSPL 225
D D + Q L
Sbjct: 159 ADQDHKTALQETL 171
>gi|83589801|ref|YP_429810.1| ribonuclease III [Moorella thermoacetica ATCC 39073]
gi|123524697|sp|Q2RJX2.1|RNC_MOOTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83572715|gb|ABC19267.1| RNAse III [Moorella thermoacetica ATCC 39073]
Length = 233
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 263 GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA 322
G NQRLEFLGD VL L+ + YLY HFP+ EG L+ +R+++V + V + +
Sbjct: 43 GDNQRLEFLGDAVLGLVVATYLYQHFPQLPEGDLTRMRAAVVCEASLVKVARRLRVGDLL 102
Query: 323 NIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN 378
+ + ++R AD +EA +G++Y+ G E F F P L+ + + +
Sbjct: 103 RLGQGEEHSGGRERPSNLADAMEAIIGSVYLSGGYELARDFVLQIFTPALE-ILSDTSFI 161
Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
D KS LQ+ + T + +YK++E GP +++ Y V+ KN LA G+S
Sbjct: 162 DSKSALQEFVQSQGT------ENVVYKILEEWGPDHAKGYKAGVFLKNRLLATGLGHS 213
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L+ FP + EG L RAA+V L +A+R+ + D + G +
Sbjct: 52 GDAVLGLVVATYLYQHFPQLPEGDLTRMRAAVVCEASLVKVARRLRVGDLLRLGQGEEHS 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD----QVFSSVL 189
E +A+ EA++G+++L GG ++A Q+F+ L
Sbjct: 112 GGRERPSNLADAMEAIIGSVYLSGGYELARDFVLQIFTPAL 152
>gi|403736854|ref|ZP_10949815.1| ribonuclease III [Austwickia chelonae NBRC 105200]
gi|403192949|dbj|GAB76585.1| ribonuclease III [Austwickia chelonae NBRC 105200]
Length = 267
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 221 EQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLIT 280
E+ P+++ + + GV + L T RS Y N + +N+RLEFLGD+VL L+
Sbjct: 11 EERPVVELVDRIHEILGVRLDE-GALRHALTHRSYAYENGGIPNNERLEFLGDSVLGLVV 69
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
++ LY+ P+ EG L+ LR++ VN R + V +G+ F + + +D+
Sbjct: 70 TESLYSDHPDLAEGQLAKLRAACVNMRALAAVGRTLGLGDFLLLGRGEEATGGRDKASIL 129
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
AD +EA +G +Y+ +G+E F P ++ D K+ LQ+ +
Sbjct: 130 ADTVEAVIGTVYLAEGIETSRVFVHHLVDPLMKASTRLGAGLDWKTSLQELAAS------ 183
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
G +P YKV E+ GP + + +T E L + G+S ++AE AA+VA
Sbjct: 184 GAYGVPEYKVSEN-GPDHEKVFTARAVIGEEVLGEGVGHSKKEAEQRAAEVA 234
>gi|403667654|ref|ZP_10932954.1| ribonuclease 3 [Kurthia sp. JC8E]
Length = 248
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 17/230 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 283
+ + L+ + G+ F + +L FT S Y N N+RLEFLGD VL+L S +
Sbjct: 20 KFEELQNNLGLHFTNKNVLYNAFTHSS--YVNEHRRKQYEDNERLEFLGDAVLELTVSKF 77
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ FP+ EG L+ LR+++V + N++ F + + + ++R AD
Sbjct: 78 LFLKFPKMTEGQLTKLRAAIVCEPALVIFANELKFGEFVLLGKGEENTGGRERPALLADC 137
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
EAF+GA+Y+D+G+E F FP+++ + + + D KS+LQ+ L +T G
Sbjct: 138 FEAFVGALYLDQGLETVVGFLGKVVFPKVELGMFS-DVMDFKSQLQE--LVQQTSSGSLQ 194
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y +++ GP + R++ V + +++ G S ++AE AA++A+
Sbjct: 195 ----YAIVKENGPAHKRTFVSQVILNDVVISEGHGKSKKEAEQKAAQIAI 240
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF FP + EG L RAAIV L A + +F+L G +
Sbjct: 66 GDAVLELTVSKFLFLKFPKMTEGQLTKLRAAIVCEPALVIFANELKFGEFVLLGKGEENT 125
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQ--HPLQ 209
E +A+CFEA +GAL+LD G++ V++ E+ F M + L
Sbjct: 126 GGRERPALLADCFEAFVGALYLDQGLETVVGFLGKVVFPKVELGMFSDVMDFKSQLQELV 185
Query: 210 EQEPDGDRQWV---EQSPLLKQLQYLEYSSGVIFNHI 243
+Q G Q+ E P K+ + S VI N +
Sbjct: 186 QQTSSGSLQYAIVKENGPAHKRT----FVSQVILNDV 218
>gi|357403940|ref|YP_004915864.1| ribonuclease 3 [Methylomicrobium alcaliphilum 20Z]
gi|351716605|emb|CCE22267.1| Ribonuclease 3 [Methylomicrobium alcaliphilum 20Z]
Length = 227
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 20/220 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G+ FN+++L T RSMG N N+RLEFLGD++L + ++ L+ FPE EG L
Sbjct: 13 GLHFNNMQLFKMALTHRSMGAHN-----NERLEFLGDSILGFVVAEKLHKMFPEASEGVL 67
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK----MKDR--ADLLEAFLGAMYID 350
S LR+SLVN + + + + + +I +LK +D +D +EA +GA++ D
Sbjct: 68 SRLRASLVNQGALADLARKLNIGDY--LILGSGELKSGGFRRDSILSDAVEAIIGALFKD 125
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G+E C Q+ +L L+ DPK++LQ+ + + D+P Y +I
Sbjct: 126 QGIEICRQWVLDMLQDKLDSLSLDNWQKDPKTQLQEL------MQSKKLDLPDYTLITMS 179
Query: 411 GPTNSRSYTVAVYFK-NERLAKATGNSIQQAEMNAAKVAL 449
G + +++ V +++ +G S ++AE +AA+ L
Sbjct: 180 GLPHEQTFKVKCTIPLSDKSCIGSGVSRKKAEQDAAEQML 219
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L +FP+ EG L+ RA++V LA LA+++ + D+++ G
Sbjct: 43 GDSILGFVVAEKLHKMFPEASEGVLSRLRASLVNQGALADLARKLNIGDYLILGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+++ EA++GALF D GI++ Q V + K + + W P+ LQE
Sbjct: 103 GGFRRDSILSDAVEAIIGALFKDQGIEICRQWVLDMLQDKLDSLSLDNWQKDPKTQLQE 161
>gi|376297527|ref|YP_005168757.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
Length = 227
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 10/215 (4%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F ++ L T S N+RLEFLGD VL+L S+ + +P HEG L+ +
Sbjct: 14 FGQVKFLETALTHSSFANEQDGFEDNERLEFLGDAVLELCISEEGFKRYPTAHEGQLTRI 73
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEA 355
RS LV ++ + + ++ + F + + ++R AD EA LGA+++D G EA
Sbjct: 74 RSQLVKEQSLAGIARELELDRFIRLGRGEELQGGRERDALLADAFEALLGAVFLDGGFEA 133
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNS 415
+ F + + E D KS+LQ+ + D P+Y + GP +
Sbjct: 134 ARRTILDIFEDQWPARAMLPETKDYKSRLQEVAQDVFR------DRPVYVLSGTSGPEHE 187
Query: 416 RSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ + V V N + G S+++AE AA++ L+
Sbjct: 188 KLFEVDVTLPNGERFRGLGTSVKRAEQEAARMGLE 222
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S F +P EG L R+ +V+ Q LA +A+ + L+ F+ G +L
Sbjct: 46 GDAVLELCISEEGFKRYPTAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRLGRGEELQ 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
E +A+ FEAL+GA+FLDGG + A
Sbjct: 106 GGRERDALLADAFEALLGAVFLDGGFEAA 134
>gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70]
gi|378774875|ref|YP_005177118.1| ribonuclease 3 [Pasteurella multocida 36950]
gi|386834840|ref|YP_006240157.1| ribonuclease III [Pasteurella multocida subsp. multocida str. 3480]
gi|13431826|sp|P57805.1|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597423|gb|AET16149.1| ribonuclease 3 [Pasteurella multocida 36950]
gi|385201543|gb|AFI46398.1| ribonuclease III [Pasteurella multocida subsp. multocida str. 3480]
Length = 225
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ + L+ L+ G FN LL + T RS + N+RLEFLGD +L I ++ L
Sbjct: 1 MTQNLERLQRQIGYQFNQPALLKQALTHRSAAVKH-----NERLEFLGDAILNFIIAEAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y+ FP+ +EG LS +R++LV T + + + + ++ ++ R AD +
Sbjct: 56 YHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+ +D + + + + +L+ DPK++LQ+ L G
Sbjct: 116 EAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQE------YLQGKRLP 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P Y V+E G + +++TV Y KN +R +G S ++AE AA+ LQ
Sbjct: 170 LPTYNVVEIKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI + L+H FP EG L+ RA +V+ LA LA++ L D++ G
Sbjct: 43 GDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY--------KDNEVRFKQW 200
+ +A+C EA++GA+ LD + ++ + + L KD + R +++
Sbjct: 103 GGFRRESILADCVEAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEY 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQGKRLPL 170
>gi|398304079|ref|ZP_10507665.1| ribonuclease III [Bacillus vallismortis DV1-F-3]
Length = 213
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD VL+L S +L+ +P EG L+ LR+++V + + +++ F ++
Sbjct: 22 NERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELS---FGDL 78
Query: 325 INPKVDLKM---KDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW 377
+ +M + R AD+ EAF+GA+Y+D+G+E E F KV FP++ +
Sbjct: 79 VLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM 138
Query: 378 NDPKSKLQQCCLTLRTLDG-GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
D KS+LQ+ DG G + YK+ GP ++R + V K E L G S
Sbjct: 139 -DFKSQLQEYV----QRDGKGSLE---YKISNEKGPAHNREFEAIVSLKGEPLGVGNGRS 190
Query: 437 IQQAEMNAAKVALQK 451
++AE +AA+ AL K
Sbjct: 191 KKEAEQHAAQEALAK 205
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +P + EG L RAAIV L LA + D +L G ++
Sbjct: 29 GDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMT 88
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ +A+ FEA +GAL+LD G++ + ++ K N+ F M + LQE
Sbjct: 89 GGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQ-LQE 146
>gi|421186072|ref|ZP_15643467.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB418]
gi|399967716|gb|EJO02182.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB418]
Length = 231
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 12/192 (6%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
QRLEFLGD+V+QLI +DYL+ +P+ EG L+ +R ++V +++ S G + +
Sbjct: 44 QRLEFLGDSVMQLIVADYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLG 103
Query: 326 NPKVDLKMKDRADLL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++R LL EAF+GA+Y D+G +A F FFP + +E+ D K
Sbjct: 104 KGEELSGARNRDSLLEDIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFF-EEFIDYK 162
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVI-EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
SKLQ+ G DI YKV E + + V V+ ++ + +G SI+ A
Sbjct: 163 SKLQELLQK-----AGSVDIE-YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIA 216
Query: 441 EMNAAKVALQKC 452
E AAK A Q
Sbjct: 217 EKRAAKKAYQDV 228
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +PD EEG L R A+VQ++ +H A+ G ++ G +L
Sbjct: 50 GDSVMQLIVADYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + +EA +GAL+ D G
Sbjct: 110 GARNRDSLLEDIWEAFIGALYKDQG 134
>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
gi|189043369|sp|A6QCJ0.1|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
Length = 223
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
+N+RLEFLGD VL LI +YL+ FP+ EG LS +R+SLVN +++ I + +
Sbjct: 35 NNERLEFLGDAVLDLIVGEYLFKKFPKSDEGILSKIRASLVNESGFTLLARKIDLGSYIY 94
Query: 324 IINPKVDLKMKDRADLL----EAFLGAMYIDKGMEACEQFC----KVCFFPRLQYFILNQ 375
+ + + +D+ LL EA +GA+Y++ G++ ++ + C P++ L++
Sbjct: 95 LSLAEENNNGRDKPSLLSNAFEAIIGAVYLEAGLDTAKEISIKLLEEC-HPKIDLQSLSK 153
Query: 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGN 435
++ K+ LQ+ + P Y+++ GP + + + +AV N+ +A A G
Sbjct: 154 DY---KTALQELTQATHAV------TPGYEMLGSSGPDHKKEFEIAVTLDNKTIATAKGK 204
Query: 436 SIQQAEMNAAKVALQ 450
S + A+ AAK+AL+
Sbjct: 205 SKKDAQQKAAKIALE 219
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I +LF FP +EG L+ RA++V LA++I L ++ + +
Sbjct: 43 GDAVLDLIVGEYLFKKFPKSDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ + ++N FEA++GA++L+ G+D A ++
Sbjct: 103 NGRDKPSLLSNAFEAIIGAVYLEAGLDTAKEI 134
>gi|354806974|ref|ZP_09040451.1| ribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514479|gb|EHE86449.1| ribonuclease III [Lactobacillus curvatus CRL 705]
Length = 229
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 17/208 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F ++ LL FT S Y N L L N+RLEFLGD V+++ S+YLY +P+
Sbjct: 14 GIEFQNLALLDEAFTHSS--YVNEHRELGLRDNERLEFLGDAVMEITVSEYLYKKYPDWP 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG L+ LR+++V ++ S + + + + + RA DL EAF GA++
Sbjct: 72 EGKLTRLRAAIVCTKSFSSFAKEAHFDRYIRLGKGEEKNGARARATLLEDLFEAFNGALF 131
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G A +F + FP+++ + + D K+ LQ+ GE +I YK++
Sbjct: 132 LDQGRGAVVKFIEQVVFPKIEAGEFSDQ-TDYKTNLQEFLQQ-----DGEVEIE-YKLLA 184
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNS 436
VGP+++R + V V + L G +
Sbjct: 185 EVGPSHARQFEVDVMMGDRVLGSGVGRN 212
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +PD EG L RAAIV + + AK + ++ G +
Sbjct: 51 GDAVMEITVSEYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFAKEAHFDRYIRLGKGEEKN 110
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + FEA GALFLD G
Sbjct: 111 GARARATLLEDLFEAFNGALFLDQG 135
>gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021]
gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021]
Length = 243
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 11/186 (5%)
Query: 243 IRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSS 302
+ +L R T RS Y N L +N+RLEFLGD+VL L+ +D LY + P+ EG L+ LR++
Sbjct: 27 VAILERAMTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDLPEGQLAKLRAA 86
Query: 303 LVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQ 358
+VN R + V +G+ F + + +D+ AD LEA +G++Y+++G++ +
Sbjct: 87 VVNMRALADVARTLGLGRFLRLGRGEEGTGGRDKSSILADTLEALIGSVYVNRGLDEAFR 146
Query: 359 FCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSY 418
+ F P + D K+ LQ+ LT G +P Y V E GP +++S+
Sbjct: 147 VVHLLFDPLITRSASLGAGLDWKTSLQE--LTASEALG----VPEYHV-EESGPDHAKSF 199
Query: 419 TVAVYF 424
T V
Sbjct: 200 TAVVLL 205
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V + LA +A+ +GL F+ G +
Sbjct: 56 GDSVLGLVVTDTLYRNHPDLPEGQLAKLRAAVVNMRALADVARTLGLGRFLRLGRGEEGT 115
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ +A+ EAL+G+++++ G+D A +V
Sbjct: 116 GGRDKSSILADTLEALIGSVYVNRGLDEAFRV 147
>gi|434381810|ref|YP_006703593.1| ribonuclease III [Brachyspira pilosicoli WesB]
gi|404430459|emb|CCG56505.1| ribonuclease III [Brachyspira pilosicoli WesB]
Length = 229
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
L+YS F + L T R+ N + NQRLEFLGD+VL LI S+++Y +
Sbjct: 13 LQYS----FKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNV 68
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG LS +++ LV+ T + + + + F + + ++R DL EA +GA+
Sbjct: 69 KEGKLSKIKAYLVSQNTLASISRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAI 128
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D +E + F + L +N D K+ LQ+ + P YK
Sbjct: 129 YLDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKI------TPTYKSY 182
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
E+ ++ + V VY K ++ A G S ++AE+NAAK AL++ +I
Sbjct: 183 EY-NENDNIMFKVEVYVKTKKYASGVGKSKKEAEINAAKKALEEIENI 229
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S H++ + +++EG L+ +A +V LA +++++ L DF+L G +
Sbjct: 49 GDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLASISRKLKLGDFLLLGKGEEAS 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E + + + FEA++GA++LD ++ F +YKD
Sbjct: 109 GGRERDNMLEDLFEAIIGAIYLDSNLENTKN-FVMRVYKD 147
>gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11]
gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11]
Length = 235
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 17/236 (7%)
Query: 221 EQSPLLKQLQYLEYSSGVIFNHIRLLARVFT-TRSMGYTNLTLGSNQRLEFLGDTVLQLI 279
+Q+P+ L Y F + LL T ++ + GS QRLEFLGD VL L+
Sbjct: 6 KQNPIAALKAALAYE----FKDLELLRVSLTHASALDPADTVAGSYQRLEFLGDRVLGLV 61
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--- 336
+ L++HFP+ EG L+ + +V T + + +++G+ I + + +
Sbjct: 62 VASMLHHHFPKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQTGGRKKTAL 121
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
AD+ EA + A+Y+D G EA ++F + + PR+ + D K+ LQ+ + ++L
Sbjct: 122 LADICEAIIAAIYLDGGFEAADEFVRRLWEPRMLSW--TGPLRDAKTTLQEWAQS-KSL- 177
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y+V GP ++ S+TV+V + + + G S + AE +AA+ L++
Sbjct: 178 ----PTPHYEVASREGPDHAPSFTVSVIVQGLKNGEGKGGSKRIAEQHAAEAVLRR 229
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L H FP +EG LA +V+ + A +A +G+ D M
Sbjct: 54 GDRVLGLVVASMLHHHFPKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EA++ A++LDGG + AD+
Sbjct: 114 GGRKKTALLADICEAIIAAIYLDGGFEAADE 144
>gi|450179695|ref|ZP_21886745.1| ribonuclease III [Streptococcus mutans 24]
gi|449248803|gb|EMC47022.1| ribonuclease III [Streptococcus mutans 24]
Length = 231
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVMIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052]
gi|189043303|sp|A6LSM2.1|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052]
Length = 232
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ +E + GV FN+ LL T S G N+RLEFLGD+VLQL ++YL+N++
Sbjct: 6 LKEIEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEYLFNNY 65
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
EG L+ +RS +V + + I + + + + ++R AD +EA +
Sbjct: 66 KHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEITGGRERISIQADAVEAII 125
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI- 403
A+Y+DKG+ F + F + I N+ D K+KLQ+ L DG ++ I
Sbjct: 126 AAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQE----LLQKDG---EVVIQ 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y++ + GP + R + V + + + +G S ++AE NAAK AL
Sbjct: 179 YELTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQAL 224
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF+ + EG L R+ IV L +AK+I L ++ + G ++
Sbjct: 49 GDSVLQLCITEYLFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEIT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
E A+ EA++ A++LD GI
Sbjct: 109 GGRERISIQADAVEAIIAAVYLDKGI 134
>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
gi|189043328|sp|A6Q1H0.1|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
Length = 226
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 20/218 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+KQL+ E G F +LL T +S Y + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKQLEEFEKKLGYSFEDKKLLKEALTHKS--YKSPV--NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----E 341
FP+ +EG LS LR+SLVN + + + + + I + + + + + LL E
Sbjct: 57 KKFPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA+Y++KG+E + +P++ L+ + D K+ LQ+ +
Sbjct: 117 AVMGAIYLEKGLEKVRELSLKLLEEAYPKID---LDSLFKDFKTALQEFTQAHYGI---- 169
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
P YK++ GP + + + VAV E ++ A G S
Sbjct: 170 --TPTYKLLGSSGPDHKKEFEVAVLLHEETISTAKGRS 205
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LF FP EG L+ RA++V + A LA+++ + ++ + +
Sbjct: 43 GDAVLDLVVGEYLFKKFPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
++N FEA+MGA++L+ G++
Sbjct: 103 QGRTKPSLLSNAFEAVMGAIYLEKGLE 129
>gi|417851881|ref|ZP_12497549.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338218195|gb|EGP03985.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 225
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 16/232 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ + L+ L+ G FN LL + T RS + N+RLEFLGD +L I ++ L
Sbjct: 1 MTQNLERLQRQIGYQFNQPALLKQALTHRSAAVKH-----NERLEFLGDAILNFIIAEAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y+ FP+ +EG LS +R++LV T + + + + ++ ++ R AD +
Sbjct: 56 YHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+ +D + + + + +L+ DPK++LQ+ L G
Sbjct: 116 EAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQE------YLQGKRLP 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
+P Y V+E G + +++TV Y KN +R +G S ++AE AA+ LQ+
Sbjct: 170 LPTYNVVEIKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQE 221
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI + L+H FP EG L+ RA +V+ LA LA++ L D++ G
Sbjct: 43 GDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY--------KDNEVRFKQW 200
+ +A+C EA++GA+ LD + ++ + + L KD + R +++
Sbjct: 103 GGFRRESILADCVEAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEY 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQGKRLPL 170
>gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
Length = 220
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 15/222 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
K Q LE + F + LL + T +S +L +N+++EFLGD VL L+ + L
Sbjct: 3 KNYQSLEKKINIKFKNTNLLIQSLTHKSHN----SLKNNEKIEFLGDRVLGLVIAKKLLE 58
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFA---NIINPKVDLKMKDRADLLEAF 343
+P+ EG L +SLVN RT + +I + + N+ N K+ ++ K +D EA
Sbjct: 59 IYPDEKEGILDKKFASLVNKRTCLEIAKNINLEKYILTFNLNNKKIKIEDKIISDCCEAL 118
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y+DKG+ E+ + ++ ++ Q D K+KLQ+ L L+ +PI
Sbjct: 119 IGALYLDKGLNITEKIILDLWKNHIKKSVVTQI--DAKTKLQE--LALKNF----KKLPI 170
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
YK+I + GP + + V V N + A G S + AE NAA
Sbjct: 171 YKLISNTGPRHKPLFKVGVKLPNTKYFIALGKSKKDAEQNAA 212
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L ++PD +EG L A++V + +AK I LE ++L + ++
Sbjct: 44 GDRVLGLVIAKKLLEIYPDEKEGILDKKFASLVNKRTCLEIAKNINLEKYILTFNLNNKK 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
++E +++C EAL+GAL+LD G+++ +++
Sbjct: 104 IKIED-KIISDCCEALIGALYLDKGLNITEKII 135
>gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88]
gi|73917577|sp|Q895M9.1|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88]
Length = 235
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 12/227 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ L+ + F +I+LL T S + N+RLEFLGD+VLQL+ ++YL+ ++
Sbjct: 7 LKDLQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITEYLFMNY 66
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
+ EG LS R+ +V + + ++ + + + + ++R AD +EA +
Sbjct: 67 KDKSEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILADAVEALI 126
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI- 403
++Y+DKG++ +F F+ ++ + ++ D K+KLQ+ DG DI I
Sbjct: 127 ASIYLDKGIDVVREFILKNFYNIVEKAMKDEIILDYKTKLQEIIQK----DG---DIQIN 179
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y +I+H GP + R + V K+ L G S +++E NAAK A++
Sbjct: 180 YILIKHEGPPHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAIE 226
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + + +LF + D EG L+ RA IV L +AK + L +++ + G +L
Sbjct: 50 GDSVLQLVITEYLFMNYKDKSEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYP-QHPLQE- 210
E +A+ EAL+ +++LD GIDV + Y E K + + LQE
Sbjct: 110 GGRERISILADAVEALIASIYLDKGIDVVREFILKNFYNIVEKAMKDEIILDYKTKLQEI 169
Query: 211 QEPDGDRQ 218
+ DGD Q
Sbjct: 170 IQKDGDIQ 177
>gi|350561405|ref|ZP_08930243.1| ribonuclease III [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349780437|gb|EGZ34755.1| ribonuclease III [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 242
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 246 LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVN 305
L + T RS G + N+R+EFLGD VL L+ +D LY P+ EG L+ LR++LVN
Sbjct: 36 LEQALTHRSAGSRH-----NERMEFLGDAVLGLVIADALYERLPDAPEGDLTRLRAALVN 90
Query: 306 NRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCK 361
+ + G+ + + + R AD LEA +GA Y G EA F
Sbjct: 91 RTALAELARAAGLEGALTLGQGERKSGGQRRESILADTLEALIGATYHAAGFEAARAFVL 150
Query: 362 VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVA 421
+ RL + DPK++LQ+ L G +P Y+V+E GP + R + V
Sbjct: 151 RLYAERLSDLPSAESLKDPKTRLQEW------LQGRGEALPEYRVLEISGPDHRRQFVVE 204
Query: 422 VYFKNE 427
V+ ++
Sbjct: 205 VWLPSQ 210
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ PD EG L RAA+V LA LA+ GLE + G
Sbjct: 57 GDAVLGLVIADALYERLPDAPEGDLTRLRAALVNRTALAELARAAGLEGALTLGQGERKS 116
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-------------KDNEVRFKQ 199
+ +A+ EAL+GA + G + A + F LY KD + R ++
Sbjct: 117 GGQRRESILADTLEALIGATYHAAGFEAA-RAFVLRLYAERLSDLPSAESLKDPKTRLQE 175
Query: 200 WMYYPQHPLQE------QEPDGDRQWV 220
W+ L E PD RQ+V
Sbjct: 176 WLQGRGEALPEYRVLEISGPDHRRQFV 202
>gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581]
gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581]
Length = 229
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 20/229 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F LL T RS G N N+RLEFLGD+++ + ++ L+ FP+ EG L
Sbjct: 13 GHRFAQPELLELAMTHRSYGGRN-----NERLEFLGDSIVNFVIAEDLFQRFPQAREGQL 67
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S LR+ LV +T + + ++ + + ++ R AD +EA +GA+Y+D G
Sbjct: 68 SRLRARLVKGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVEAVIGAIYLDAG 127
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ F RL+ L DPK++LQ+ L + +P Y+VI G
Sbjct: 128 MDTARTRVLSWFAERLETINLQDTQKDPKTRLQEF------LQSRQVALPRYEVISVEGE 181
Query: 413 TNSRSYTVAVYFKNERLAKAT---GNSIQQAEMNAAKVALQKCPSICPQ 458
+++++TV + E L + T G+S + AE AA+ AL + P+
Sbjct: 182 AHAQTFTVECHV--EMLDEHTLGIGSSRRHAEQQAAEQALSQLEKGGPR 228
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + LF FP EG L+ RA +V+ Q LA LA+ + + + G
Sbjct: 43 GDSIVNFVIAEDLFQRFPQAREGQLSRLRARLVKGQTLAELAREMSFGECLRLGSGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA-DQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+A+ EA++GA++LD G+D A +V S + + + P+ LQE
Sbjct: 103 GGHRRDSILADAVEAVIGAIYLDAGMDTARTRVLSWFAERLETINLQDTQKDPKTRLQE 161
>gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159]
gi|449865592|ref|ZP_21779071.1| ribonuclease III [Streptococcus mutans U2B]
gi|449870030|ref|ZP_21780421.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|450036656|ref|ZP_21835579.1| ribonuclease III [Streptococcus mutans M21]
gi|450082186|ref|ZP_21852201.1| ribonuclease III [Streptococcus mutans N66]
gi|450106671|ref|ZP_21860623.1| ribonuclease III [Streptococcus mutans SF14]
gi|81451148|sp|Q8DT66.1|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159]
gi|449157259|gb|EMB60706.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|449193614|gb|EMB94994.1| ribonuclease III [Streptococcus mutans M21]
gi|449214558|gb|EMC14814.1| ribonuclease III [Streptococcus mutans N66]
gi|449223107|gb|EMC22812.1| ribonuclease III [Streptococcus mutans SF14]
gi|449264141|gb|EMC61490.1| ribonuclease III [Streptococcus mutans U2B]
Length = 231
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISHYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268]
gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268]
Length = 241
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFT----TRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L LE G F +LL T + MG+ SNQRLEFLGD VL+L++S L
Sbjct: 11 LSKLEEDLGYHFQDQKLLLHALTHPSYSNEMGHPKEA--SNQRLEFLGDAVLELVSSTLL 68
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN--PKVDLKMKDR--ADLL 340
Y+ P EG ++ LR++LV +VV + + + + + ++ +D +D L
Sbjct: 69 YHKKPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEEREGIQFRDSVLSDAL 128
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+Y+D GM+ E F + +++ L + D K+ LQ+ C R
Sbjct: 129 EAVIGAIYLDGGMKKAECFVRGKVLSDIEHKTL---FQDAKTMLQEYCTAKR-------- 177
Query: 401 IPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P+ Y ++E GP + R Y V+V E G+S ++AE AA AL+K
Sbjct: 178 YPLEYDLLEESGPFHQRFYKVSVKVNEEVYGIGEGSSKKKAEQAAAYFALEK 229
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + ++S L+H P I+EG + RAA+V LA +AK + L ++L G +
Sbjct: 56 GDAVLELVSSTLLYHKKPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEER- 114
Query: 153 HEVELKHA-MANCFEALMGALFLDGGIDVAD-----QVFSSV----LYKDNEVRFKQWMY 202
++ + + +++ EA++GA++LDGG+ A+ +V S + L++D + +++
Sbjct: 115 EGIQFRDSVLSDALEAVIGAIYLDGGMKKAECFVRGKVLSDIEHKTLFQDAKTMLQEYCT 174
Query: 203 YPQHPLQ 209
++PL+
Sbjct: 175 AKRYPLE 181
>gi|345886949|ref|ZP_08838163.1| ribonuclease III [Bilophila sp. 4_1_30]
gi|345037798|gb|EGW42307.1| ribonuclease III [Bilophila sp. 4_1_30]
Length = 233
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD VL++ S L+ FP+ EG L+ LRSSLVN T +V+ + + +
Sbjct: 40 NERLEFLGDAVLEIAVSAQLFARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRL 99
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ + + R +D +EA G +++D G+E + + + D
Sbjct: 100 ARGEENQGGRQRDSLLSDAMEAVFGGVFVDGGIEKAREVVERLYTDLWPKNATKVRRKDF 159
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K+KLQ+ T R G +P+Y + + GP +++ ++V V + R +A+G +++A
Sbjct: 160 KTKLQEA--TQRISKG----LPVYALEDSYGPEHAKIFSVRVDLPDGRQFRASGPGLKRA 213
Query: 441 EMNAAKVAL 449
E AA VAL
Sbjct: 214 EQEAAHVAL 222
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF FPD EG L R+++V LA +A+++ L+D + A G +
Sbjct: 47 GDAVLEIAVSAQLFARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQ 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD------NEVRFKQWMYYPQH 206
+ +++ EA+ G +F+DGGI+ A +V LY D +VR K + Q
Sbjct: 107 GGRQRDSLLSDAMEAVFGGVFVDGGIEKAREVVER-LYTDLWPKNATKVRRKDFKTKLQE 165
Query: 207 PLQ 209
Q
Sbjct: 166 ATQ 168
>gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814]
gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814]
Length = 255
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 14/219 (6%)
Query: 236 SGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
+G+ F + LL R FT S SN+RLEFLGD VL L+ + L F + EG
Sbjct: 39 AGIKFKDVSLLDRAFTHTSAVPGEAADWSNERLEFLGDRVLGLVAASQLITRFEKEREGG 98
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFF----ANIINPKVDLKMKDRADLLEAFLGAMYIDK 351
L+ ++LV+ T + + +I + + A+ + K A++ EA +GA+Y+D
Sbjct: 99 LAPRLNALVSRDTCAKIAAEINLGQYLILDASESSAGGTTKPSLLANVTEALIGAIYLDA 158
Query: 352 GMEACEQFCKVCFFPRLQYF-ILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G+ A E+F V ++ +YF L DPKS LQ+ G P P Y+ I+
Sbjct: 159 GLAASERFI-VKYW--KEYFKTLTDVPRDPKSALQEWA-----QGDGRP-APNYENIDRT 209
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP ++ +TV V + R AK G+S Q+A+ AA L
Sbjct: 210 GPDHAPVFTVEVRVEGVRPAKGEGSSKQEAQRAAASAML 248
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L F EGGLA A+V A +A I L +++
Sbjct: 75 GDRVLGLVAASQLITRFEKEREGGLAPRLNALVSRDTCAKIAAEINLGQYLILDASESSA 134
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHP---LQ 209
+AN EAL+GA++LD G+ A + F +K+ FK P+ P LQ
Sbjct: 135 GGTTKPSLLANVTEALIGAIYLDAGL-AASERFIVKYWKE---YFKTLTDVPRDPKSALQ 190
Query: 210 E 210
E
Sbjct: 191 E 191
>gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10]
gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5]
gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10]
gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5]
Length = 233
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 24/221 (10%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS----NQRLEFLGDTVLQLITS 281
LKQLQ+ + F + LL + FT S Y N S N+RLEFLGD VL+L S
Sbjct: 6 LKQLQH---KLQIQFRNAMLLKQAFTHAS--YVNEHRFSQSQDNERLEFLGDAVLELTVS 60
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----- 336
++LYN FP+ EG L+ LR+++V S+V + + F ++ K + R
Sbjct: 61 EFLYNLFPDRPEGELTKLRAAIVCE--PSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPAL 118
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
AD+ E+F+GA+Y+D+G+EA +F FP + Q +D K++LQ+ T
Sbjct: 119 LADVFESFVGALYLDQGLEAVRRFLSDHVFPTVTVNGRPQ-MSDYKTELQEL-----TQH 172
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
G + Y+++E GP + R + VY +E L + +G S
Sbjct: 173 HGMGALE-YRIVEERGPAHEREFVSEVYMGSECLGRGSGRS 212
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+++FPD EG L RAAIV L A + ++L G ++
Sbjct: 51 GDAVLELTVSEFLYNLFPDRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-----VADQVFSSV 188
+A+ FE+ +GAL+LD G++ ++D VF +V
Sbjct: 111 GGRTRPALLADVFESFVGALYLDQGLEAVRRFLSDHVFPTV 151
>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
Length = 256
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL T RS + + N+RLEFLGD+VL +I ++YLY ++P+ E +LS +R ++V
Sbjct: 35 LLILALTHRSFAFEVGNIEPNERLEFLGDSVLSIIVTEYLYKNYPQSSEANLSRMRGAIV 94
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
+ +T S V +I + F + + +DR D+ EA +GA Y+ G+EA +
Sbjct: 95 SEKTLSQVARNIRLGDFILLGKGENLTGGRDRDSILCDMTEAMIGATYLSHGLEATRRIV 154
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
+ P L+ + + +D K+ LQ+ C GE PIY+ E GP ++R +
Sbjct: 155 EYHLRPFLERAVELGKSSDYKTTLQEYCAEASL---GE---PIYEA-EGFGPDHARYFIA 207
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
V E + +S + A+ AA+
Sbjct: 208 TVTVGGELVGHGQASSKKGAKSEAARAG 235
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + +L+ +P E L+ R AIV + L+ +A+ I L DF+L G +L
Sbjct: 62 GDSVLSIIVTEYLYKNYPQSSEANLSRMRGAIVSEKTLSQVARNIRLGDFILLGKGENLT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ + + EA++GA +L G++ ++
Sbjct: 122 GGRDRDSILCDMTEAMIGATYLSHGLEATRRI 153
>gi|383310849|ref|YP_005363659.1| ribonuclease III [Pasteurella multocida subsp. multocida str. HN06]
gi|425062740|ref|ZP_18465865.1| Ribonuclease III [Pasteurella multocida subsp. gallicida X73]
gi|380872121|gb|AFF24488.1| ribonuclease III [Pasteurella multocida subsp. multocida str. HN06]
gi|404383446|gb|EJZ79897.1| Ribonuclease III [Pasteurella multocida subsp. gallicida X73]
Length = 225
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ + L+ L+ G FN LL + T RS + N+RLEFLGD +L I ++ L
Sbjct: 1 MTQNLERLQRQIGYHFNQPALLKQALTHRSAAVKH-----NERLEFLGDAILNFIIAEAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y+ FP+ +EG LS +R++LV T + + + + ++ ++ R AD +
Sbjct: 56 YHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+ +D + + + + +L+ DPK++LQ+ L G
Sbjct: 116 EAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQE------YLQGKRLP 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P Y V+E G + +++TV Y KN +R +G S ++AE AA+ LQ
Sbjct: 170 LPTYNVVEIKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI + L+H FP EG L+ RA +V+ LA LA++ L D++ G
Sbjct: 43 GDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY--------KDNEVRFKQW 200
+ +A+C EA++GA+ LD + ++ + + L KD + R +++
Sbjct: 103 GGFRRESILADCVEAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEY 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQGKRLPL 170
>gi|421262773|ref|ZP_15713860.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401690458|gb|EJS85729.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 225
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 16/231 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ + L L+ G FN LL + T RS + N+RLEFLGD +L I ++ L
Sbjct: 1 MTQNLDRLQRQIGYQFNQPALLKQALTHRSAAVKH-----NERLEFLGDAILNFIIAEAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y+ FP+ +EG LS +R++LV T + + + + ++ ++ R AD +
Sbjct: 56 YHQFPKCNEGELSRMRATLVREPTLATLARQFELGDYLSLGPGELKSGGFRRESILADCV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+ +D + + + + +L+ DPK++LQ+ L G
Sbjct: 116 EAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQE------YLQGKRLP 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P Y V+E G + +++TV Y KN +R +G S ++AE AA+ LQ
Sbjct: 170 LPTYNVVEIKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI + L+H FP EG L+ RA +V+ LA LA++ L D++ G
Sbjct: 43 GDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLATLARQFELGDYLSLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLY--------KDNEVRFKQW 200
+ +A+C EA++GA+ LD + ++ + + L KD + R +++
Sbjct: 103 GGFRRESILADCVEAIIGAISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEY 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQGKRLPL 170
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 220 VEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLI 279
V Q P+ ++ L SGV + LL R T RS Y N + N+R EFLGD VL L+
Sbjct: 13 VSQRPVGDLVRILSEVSGVDVDE-SLLRRALTHRSFAYENGGIPHNERQEFLGDAVLGLV 71
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR--- 336
++ LY P+ EGHL+ R+++VN+R + V + + + + ++ +D+
Sbjct: 72 VTETLYTDQPDAPEGHLAKQRAAVVNSRALAEVARGLELGEYLLLGRGELATGGRDKDSI 131
Query: 337 -ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
AD EA +G +++ G+EA + P + D K+ LQ+
Sbjct: 132 LADTTEAVIGTVFLSGGIEAGRRIVHHLIDPLMNRSSTMGAALDWKTSLQEATAAAGL-- 189
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
P Y V+E GP + + +T V L TG + + AEM AA+ A
Sbjct: 190 ----GAPTY-VVEGEGPDHDKVFTATVLVDGRTLGAGTGRNKKSAEMIAAENA 237
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L+ PD EG LA RAA+V ++ LA +A+ + L +++L G
Sbjct: 64 GDAVLGLVVTETLYTDQPDAPEGHLAKQRAAVVNSRALAEVARGLELGEYLLLGRGELAT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ +A+ EA++G +FL GGI+ ++
Sbjct: 124 GGRDKDSILADTTEAVIGTVFLSGGIEAGRRIV 156
>gi|410621832|ref|ZP_11332675.1| ribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158589|dbj|GAC28049.1| ribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 224
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 16/220 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL + FT RS + N+RLEFLGD VL ++ +D LY FPE EG L
Sbjct: 12 GYTFENEALLEQAFTHRSAAKIH-----NERLEFLGDAVLGMVVADLLYLQFPEQPEGKL 66
Query: 297 SLLRSSLVNNRTQSVVCN--DIG--MPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKG 352
+ +RSSLV T +++ D G + + + + AD++EA +GA++++ G
Sbjct: 67 TRMRSSLVKGDTLALIAKEHDFGALLKLGSGEMKSGGHRRSSTLADVVEAVIGAIFLEAG 126
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
++A + F R++ ++ D K++LQ+ L R L +P Y+VI G
Sbjct: 127 IDAAKNTIIKLFASRIEKLDPYRQIKDNKTQLQE-FLQSRQL-----PLPNYEVISISGK 180
Query: 413 TNSRSYTVAVYFKNERLAK-ATGNSIQQAEMNAAKVALQK 451
+++++ V + ++ G S +QAE NAAK L+K
Sbjct: 181 DHAQTFEVDCTVEPLNTSQIGKGKSRRQAEQNAAKQTLEK 220
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+ FP+ EG L R+++V+ LA +AK + G +A+
Sbjct: 54 LYLQFPEQPEGKLTRMRSSLVKGDTLALIAKEHDFGALLKLGSGEMKSGGHRRSSTLADV 113
Query: 165 FEALMGALFLDGGIDVAD----QVFSSVL--------YKDNEVRFKQWMYYPQHPL 208
EA++GA+FL+ GID A ++F+S + KDN+ + ++++ Q PL
Sbjct: 114 VEAVIGAIFLEAGIDAAKNTIIKLFASRIEKLDPYRQIKDNKTQLQEFLQSRQLPL 169
>gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
Length = 271
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF-- 321
SNQRLEFLGD VL LI S+ LY FPE EG LS R+ +VN ++ + I +
Sbjct: 76 SNQRLEFLGDAVLDLIISELLYTVFPESDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLL 135
Query: 322 ----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW 377
A+ IN + AD EA +GA+Y+DKG+E +F + ++
Sbjct: 136 IGETADKIN--IQTSTSSLADAFEALIGALYLDKGLEETRKFIMRHVAGHVDIKKIDTVE 193
Query: 378 NDPKSKL----QQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKAT 433
N+ KS+L Q C + P+Y V+ G + + +T+ V N L K +
Sbjct: 194 NNYKSRLIEYTQSCQIA----------PPVYTVVSEEGAEHEKLFTIEVSCDNRPLGKGS 243
Query: 434 GNSIQQAEMNAAKVALQK 451
+ AE AA+ AL++
Sbjct: 244 ARRKKDAEQTAAREALEE 261
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I S L+ VFP+ +EG L++ RA IV + LA A +I L + +L +D
Sbjct: 84 GDAVLDLIISELLYTVFPESDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKI 143
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ ++A+ FEAL+GAL+LD G++
Sbjct: 144 NIQTSTSSLADAFEALIGALYLDKGLE 170
>gi|449930017|ref|ZP_21801928.1| ribonuclease III [Streptococcus mutans 3SN1]
gi|449163899|gb|EMB66988.1| ribonuclease III [Streptococcus mutans 3SN1]
Length = 231
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 120/228 (52%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D ++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDADLKAVEAFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|359300160|ref|ZP_09185999.1| ribonuclease III [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305203|ref|ZP_10824262.1| ribonuclease III [Haemophilus sputorum HK 2154]
gi|400376316|gb|EJP29203.1| ribonuclease III [Haemophilus sputorum HK 2154]
Length = 223
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 16/227 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
QL+ L+ G F + L + T RS N N+RLEFLGD++L L++
Sbjct: 2 QLERLQKKLGYQFETLDYLTQALTHRSAASKN-----NERLEFLGDSILNFAIGKALFDQ 56
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
FP+ +EG LS +R++LV T +++ + + F + ++ R AD +EA
Sbjct: 57 FPKANEGELSRMRATLVREHTLAMIAREFNLGEFLKLGPGELKSGGHRRESILADCVEAI 116
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ A+Y+DKG+E Q + L + DPK++LQ+ L + +PI
Sbjct: 117 IAAIYLDKGIEQAMQKVYDWYAGFLAEIKPGEAQKDPKTRLQEF------LQSRKQPLPI 170
Query: 404 YKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
Y+VI+ G +++++ V+ + L +G S ++AE NAA+ L
Sbjct: 171 YEVIDIKGEAHNQTFKVSCQVTQLDMLFIGSGTSRRKAEQNAAEQVL 217
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F LF FP EG L+ RA +V+ LA +A+ L +F+ G
Sbjct: 41 GDSILNFAIGKALFDQFPKANEGELSRMRATLVREHTLAMIAREFNLGEFLKLGPGELKS 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKDNEVRFKQW 200
+ +A+C EA++ A++LD GI+ A Q + KD + R +++
Sbjct: 101 GGHRRESILADCVEAIIAAIYLDKGIEQAMQKVYDWYAGFLAEIKPGEAQKDPKTRLQEF 160
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 161 LQSRKQPL 168
>gi|290580116|ref|YP_003484508.1| ribonuclease III [Streptococcus mutans NN2025]
gi|387785786|ref|YP_006250882.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|397650125|ref|YP_006490652.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449883155|ref|ZP_21784950.1| ribonuclease III [Streptococcus mutans SA38]
gi|449886646|ref|ZP_21786331.1| ribonuclease III [Streptococcus mutans SA41]
gi|449896580|ref|ZP_21789793.1| ribonuclease III [Streptococcus mutans R221]
gi|449903105|ref|ZP_21791946.1| ribonuclease III [Streptococcus mutans M230]
gi|449910394|ref|ZP_21794689.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449915436|ref|ZP_21796285.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449923956|ref|ZP_21799326.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449936957|ref|ZP_21804303.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449942733|ref|ZP_21806143.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449948097|ref|ZP_21807841.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449965596|ref|ZP_21811915.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449969401|ref|ZP_21813219.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449981797|ref|ZP_21817972.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449985613|ref|ZP_21819761.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449988985|ref|ZP_21820855.1| ribonuclease III [Streptococcus mutans NVAB]
gi|450001131|ref|ZP_21825544.1| ribonuclease III [Streptococcus mutans N29]
gi|450004965|ref|ZP_21826386.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|450009568|ref|ZP_21828167.1| ribonuclease III [Streptococcus mutans A19]
gi|450022617|ref|ZP_21830065.1| ribonuclease III [Streptococcus mutans U138]
gi|450029673|ref|ZP_21832794.1| ribonuclease III [Streptococcus mutans G123]
gi|450040444|ref|ZP_21836806.1| ribonuclease III [Streptococcus mutans T4]
gi|450045382|ref|ZP_21838444.1| ribonuclease III [Streptococcus mutans N34]
gi|450057211|ref|ZP_21842431.1| ribonuclease III [Streptococcus mutans NLML4]
gi|450062246|ref|ZP_21844215.1| ribonuclease III [Streptococcus mutans NLML5]
gi|450067623|ref|ZP_21846753.1| ribonuclease III [Streptococcus mutans NLML9]
gi|450070918|ref|ZP_21847870.1| ribonuclease III [Streptococcus mutans M2A]
gi|450076690|ref|ZP_21849975.1| ribonuclease III [Streptococcus mutans N3209]
gi|450086822|ref|ZP_21853909.1| ribonuclease III [Streptococcus mutans NV1996]
gi|450092975|ref|ZP_21856361.1| ribonuclease III [Streptococcus mutans W6]
gi|450097913|ref|ZP_21857712.1| ribonuclease III [Streptococcus mutans SF1]
gi|450111244|ref|ZP_21862577.1| ribonuclease III [Streptococcus mutans SM6]
gi|450115163|ref|ZP_21863766.1| ribonuclease III [Streptococcus mutans ST1]
gi|450120101|ref|ZP_21865491.1| ribonuclease III [Streptococcus mutans ST6]
gi|450128458|ref|ZP_21868976.1| ribonuclease III [Streptococcus mutans U2A]
gi|450132303|ref|ZP_21869976.1| ribonuclease III [Streptococcus mutans NLML8]
gi|450144543|ref|ZP_21874088.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|450148952|ref|ZP_21875891.1| ribonuclease III [Streptococcus mutans 14D]
gi|450153375|ref|ZP_21877182.1| ribonuclease III [Streptococcus mutans 21]
gi|450164294|ref|ZP_21881265.1| ribonuclease III [Streptococcus mutans B]
gi|450169338|ref|ZP_21882938.1| ribonuclease III [Streptococcus mutans SM4]
gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025]
gi|379132187|dbj|BAL68939.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|392603694|gb|AFM81858.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449149964|gb|EMB53742.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449150611|gb|EMB54371.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|449153291|gb|EMB56977.1| ribonuclease III [Streptococcus mutans NLML8]
gi|449156564|gb|EMB60031.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449163527|gb|EMB66630.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449165032|gb|EMB68062.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449167960|gb|EMB70809.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449171066|gb|EMB73743.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449174220|gb|EMB76725.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449175505|gb|EMB77915.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449178974|gb|EMB81208.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449183233|gb|EMB85225.1| ribonuclease III [Streptococcus mutans NVAB]
gi|449184921|gb|EMB86831.1| ribonuclease III [Streptococcus mutans N29]
gi|449189156|gb|EMB90833.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|449190861|gb|EMB92406.1| ribonuclease III [Streptococcus mutans A19]
gi|449194139|gb|EMB95504.1| ribonuclease III [Streptococcus mutans G123]
gi|449194726|gb|EMB96073.1| ribonuclease III [Streptococcus mutans U138]
gi|449198938|gb|EMC00026.1| ribonuclease III [Streptococcus mutans T4]
gi|449200451|gb|EMC01479.1| ribonuclease III [Streptococcus mutans N34]
gi|449205570|gb|EMC06309.1| ribonuclease III [Streptococcus mutans NLML4]
gi|449206170|gb|EMC06885.1| ribonuclease III [Streptococcus mutans NLML5]
gi|449207926|gb|EMC08574.1| ribonuclease III [Streptococcus mutans NLML9]
gi|449212320|gb|EMC12693.1| ribonuclease III [Streptococcus mutans N3209]
gi|449213161|gb|EMC13504.1| ribonuclease III [Streptococcus mutans M2A]
gi|449217589|gb|EMC17630.1| ribonuclease III [Streptococcus mutans W6]
gi|449219025|gb|EMC19011.1| ribonuclease III [Streptococcus mutans NV1996]
gi|449221970|gb|EMC21712.1| ribonuclease III [Streptococcus mutans SF1]
gi|449224014|gb|EMC23670.1| ribonuclease III [Streptococcus mutans SM6]
gi|449228279|gb|EMC27654.1| ribonuclease III [Streptococcus mutans ST1]
gi|449229529|gb|EMC28839.1| ribonuclease III [Streptococcus mutans U2A]
gi|449230588|gb|EMC29840.1| ribonuclease III [Streptococcus mutans ST6]
gi|449235188|gb|EMC34160.1| ribonuclease III [Streptococcus mutans 14D]
gi|449238994|gb|EMC37730.1| ribonuclease III [Streptococcus mutans 21]
gi|449242224|gb|EMC40825.1| ribonuclease III [Streptococcus mutans B]
gi|449247478|gb|EMC45758.1| ribonuclease III [Streptococcus mutans SM4]
gi|449250176|gb|EMC48250.1| ribonuclease III [Streptococcus mutans SA38]
gi|449253905|gb|EMC51838.1| ribonuclease III [Streptococcus mutans SA41]
gi|449259703|gb|EMC57223.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449261655|gb|EMC59123.1| ribonuclease III [Streptococcus mutans M230]
gi|449261943|gb|EMC59402.1| ribonuclease III [Streptococcus mutans R221]
Length = 231
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|431806995|ref|YP_007233893.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
gi|430780354|gb|AGA65638.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
Length = 229
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
L+YS F + L T R+ N + NQRLEFLGD+VL LI S+++Y +
Sbjct: 13 LQYS----FKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNV 68
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG LS +++ LV+ T + + + + F + + ++R DL EA +GA+
Sbjct: 69 KEGKLSKIKAYLVSQNTLASISRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAI 128
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D +E + F + L +N D K+ LQ+ + P YK
Sbjct: 129 YLDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKI------TPTYKSY 182
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
E+ ++ + V VY K ++ A G S ++AE+NAAK AL++ +I
Sbjct: 183 EY-NENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKALEEIENI 229
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S H++ + +++EG L+ +A +V LA +++++ L DF+L G +
Sbjct: 49 GDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLASISRKLKLGDFLLLGKGEEAS 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E + + + FEA++GA++LD ++ F +YKD
Sbjct: 109 GGRERDNMLEDLFEAIIGAIYLDSNLENTKN-FVMRVYKD 147
>gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266]
gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266]
Length = 273
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 18/231 (7%)
Query: 231 YLEYSSGVIFNHIRLLARVFTTRSM--GYTNLT--LGSNQRLEFLGDTVLQLITSDYLYN 286
+LE +G ++ L T RS+ Y + T + SNQRLEFLGD VL L+ SDYL+
Sbjct: 43 FLETCAGSKGGNLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLFR 102
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLL 340
+FP+ EG LS R+ +VN ++ + IG+ II D K K R AD
Sbjct: 103 NFPDSREGELSSNRAKIVNRKSLAGFARSIGLGKHL-IIGESAD-KNKIRSSESALADAF 160
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
E+ +GA+Y+DKG++A F + + ++ KS+L + + P
Sbjct: 161 ESLIGAIYLDKGLDAAFAFVMKQITEHADFRSIVAAEHNYKSQLIEYTQSHHL----PP- 215
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P+YKVI G + +++T+ V + ++ + T + AE AA+ A+ +
Sbjct: 216 -PVYKVIAEEGAEHEKTFTIEVSVDDRQMGQGTAPRKKDAEQLAAREAIDR 265
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FPD EG L++ RA IV + LA A+ IGL ++ +D
Sbjct: 88 GDAVLGLLISDYLFRNFPDSREGELSSNRAKIVNRKSLAGFARSIGLGKHLIIGESADKN 147
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ A+A+ FE+L+GA++LD G+D A
Sbjct: 148 KIRSSESALADAFESLIGAIYLDKGLDAA 176
>gi|451344225|ref|ZP_21913285.1| ribonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449336939|gb|EMD16107.1| ribonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 232
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 16/233 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSD 282
+K L YL + F+ ++ + FT S Y N L +RLEF+GD VLQL S+
Sbjct: 1 MKILDYL-IKENIPFHSLKYYKQAFTHSS--YANEAQNKLEDYERLEFMGDAVLQLFVSE 57
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMP--FFANIINPKVDLKMKDRA--D 338
YL+ +P++ EG L+ LRS LV + + ++ + + + K + +D D
Sbjct: 58 YLFKSYPDYPEGELTTLRSKLVREESLAKFARELRLEELIYLGVGEEKSGGRDRDSVLCD 117
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+ E+F+GA+Y+D G + + F + ++E D K+KLQ+ + +
Sbjct: 118 IFESFVGALYLDCGKKEVIKILHKTIFKHVDDVFHSEEIIDYKTKLQEL------IQADD 171
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
YK+I GP N+ +T+ V L G S ++AE +AK AL K
Sbjct: 172 RRSVTYKLIAETGPANAPEFTINVTLDGMVLGTGKGTSKKKAEQQSAKDALLK 224
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +LF +PD EG L T R+ +V+ + LA A+ + LE+ + G +
Sbjct: 47 GDAVLQLFVSEYLFKSYPDYPEGELTTLRSKLVREESLAKFARELRLEELIYLGVGEEKS 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 191
+ + + FE+ +GAL+LD G ++ ++K
Sbjct: 107 GGRDRDSVLCDIFESFVGALYLDCGKKEVIKILHKTIFK 145
>gi|407012478|gb|EKE26816.1| ribonuclease III [uncultured bacterium (gcode 4)]
Length = 245
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 30/228 (13%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
+N++ L + F RS+ T+L SN+RLEF D VL+LI ++ L+ +PE E L+
Sbjct: 28 YNNLTLYIQSFVHRSILNEKTSLFTESNERLEFFWDAVLELIVTEMLFFKYPEKLEWELT 87
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANII-------------NPKVDLKMKDRADLLEAFL 344
+RS++V + ++V + + F N + NP + A+ LEAFL
Sbjct: 88 DIRSAIVRWKNLAIVSDKLN---FKNYVVLSKWEILAWWNTNPYI------LANTLEAFL 138
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
A+YID + F + F L + N+ + DPKS LQ+ + + P Y
Sbjct: 139 WAIYIDLWYKFAFDFVEKHIFSTLSEILENKLYIDPKSYLQELVQSKYNV------TPNY 192
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+V+ G + ++Y + VYF +++ + + +S ++A+ NAA+ AL K
Sbjct: 193 EVVSESGFDHEKNYLIWVYFDFKKIWEWSWSSKKKAQKNAAENALSKL 240
>gi|407013935|gb|EKE28004.1| hypothetical protein ACD_3C00111G0021 [uncultured bacterium (gcode
4)]
Length = 256
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
Query: 240 FNHIRLLARVFTTRSMGYTNLT--LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
+ + L A+ F +S+ T + SN+RLEF D VL+L ++ L+ ++PE E L+
Sbjct: 28 YKDLSLYAKSFVHKSVLNEKSTKFIDSNERLEFFWDAVLELTVTEMLFFNYPEKEEWELT 87
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGM 353
+RS++V + + + +D+ + + + D A+ LEAFL A+YID G
Sbjct: 88 DIRSAVVRWKNLANIASDLNFNEYIVLSKWETLAWWNDNPYILANTLEAFLWAIYIDLGY 147
Query: 354 EACEQFCKVCFFPRLQYFILNQEWN-DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
+ ++F + + L+ IL+Q + DPKS+LQ+ + + P Y+VI+ G
Sbjct: 148 KEAKKFVEDKIYSSLEN-ILSQSLHIDPKSQLQEIVQSKFNI------TPTYEVIDESGL 200
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
+ ++Y + VYF + + + G+S ++A+ +AA+ AL K S
Sbjct: 201 DHEKNYRIWVYFWEKLIWEWNGSSKKKAQKSAAEDALTKINS 242
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
LF +P+ EE L R+A+V+ ++LA++A + ++++ + L + + +AN
Sbjct: 74 LFFNYPEKEEWELTDIRSAVVRWKNLANIASDLNFNEYIVLSKWETLAWWNDNPYILANT 133
Query: 165 FEALMGALFLDGGID-----VADQVFSSV 188
EA + A+++D G V D+++SS+
Sbjct: 134 LEAFLWAIYIDLGYKEAKKFVEDKIYSSL 162
>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL T RS Y N + +N+RLEFLGD+VL L+ +D L+ P+ EG L+ LR+++V
Sbjct: 17 LLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDSLFRAHPDLPEGQLAKLRAAVV 76
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGMEACEQFC 360
+ + +VV +G+ + + +D+A D +EA +GA+++ G+E +
Sbjct: 77 SAKALAVVARTLGIGDVVRLGRGEETTGGRDKASILSDTVEAVIGAVFLQFGIERAAEVV 136
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P + D K+ LQ+ +P Y +E GP ++RS+T
Sbjct: 137 HRVFDPVMADAASLGAALDWKTSLQEMAAHHGL------GVPRYH-LEGTGPDHARSFTA 189
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
V+ A G S ++AE A++A
Sbjct: 190 EVHLGERVFAGGAGRSKKEAEQEVAEIA 217
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + LF PD+ EG LA RAA+V + LA +A+ +G+ D + G +
Sbjct: 44 GDSVLGLVVTDSLFRAHPDLPEGQLAKLRAAVVSAKALAVVARTLGIGDVVRLGRGEETT 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSV 188
+ +++ EA++GA+FL GI+ A +V V
Sbjct: 104 GGRDKASILSDTVEAVIGAVFLQFGIERAAEVVHRV 139
>gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia]
Length = 232
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 13/221 (5%)
Query: 235 SSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
++G F + LL T S+ Y + + +RLEFLGD VL + S+ LY FP+ EG
Sbjct: 16 ATGYQFRDLDLLLEALTHPSLSYK--SAANYERLEFLGDAVLSMTISEMLYRLFPDDDEG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYID 350
L+ R++LV + IG+ + + D + LEA +GAMY+D
Sbjct: 74 CLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G EA F + R Q+ DPK+ LQ+ + G +P+YK++
Sbjct: 134 GGPEAYRSFIHKHWLARAQHMSYTPP-QDPKTALQEW------VQGRGWAMPLYKLVSKS 186
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP + + V V + TG+S + AE AAK+ LQK
Sbjct: 187 GPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLQK 227
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ S L+ +FPD +EG L R A+V+ + +A+ IGL + +L + G C
Sbjct: 51 GDAVLSMTISEMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTC 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ + N EAL+GA+++DGG + + S ++K R + Y P Q+
Sbjct: 111 GGSDNPGTLENALEALIGAMYMDGG----PEAYRSFIHKHWLARAQHMSYTPP-----QD 161
Query: 213 PDGD-RQWVE 221
P ++WV+
Sbjct: 162 PKTALQEWVQ 171
>gi|406943452|gb|EKD75444.1| hypothetical protein ACD_44C00126G0001 [uncultured bacterium]
Length = 224
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 109/234 (46%), Gaps = 27/234 (11%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+KQLQY F LL RSM N N+RLEFLGD +L I + L
Sbjct: 8 LMKQLQYQ-------FKDENLLLSALKHRSMQEDN-----NERLEFLGDGILNFIIGEAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------AD 338
++ +P EG LS LRS LV T + + + + F I+ P +LK AD
Sbjct: 56 FHRYPYEKEGELSRLRSVLVREATLASLAKEFNLSEFL-ILGPG-ELKSGGAKRNSILAD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA +GA+++D E C + + RL +L D KS LQ+ L +
Sbjct: 114 AMEAIIGALFLDSNFETCRECVLRWYETRLSSSVLGDASKDSKSFLQE------YLQSRK 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERL-AKATGNSIQQAEMNAAKVALQK 451
IP Y++IE G +++ + V L AK S +QAE AAK+ L+K
Sbjct: 168 MRIPKYEIIEVAGQPHAQLFQVKCEIPELNLSAKGVATSRRQAEQEAAKLILEK 221
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI LFH +P +EG L+ R+ +V+ LA LAK L +F++ G
Sbjct: 43 GDGILNFIIGEALFHRYPYEKEGELSRLRSVLVREATLASLAKEFNLSEFLILGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ EA++GALFLD +
Sbjct: 103 GGAKRNSILADAMEAIIGALFLDSNFET 130
>gi|338997149|ref|ZP_08635852.1| ribonuclease III [Halomonas sp. TD01]
gi|338765983|gb|EGP20912.1| ribonuclease III [Halomonas sp. TD01]
Length = 230
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 23/227 (10%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F L+ T RS G N N+RLEFLGD+++ + ++ L+ FP+ EG L
Sbjct: 13 GHTFGDPTLMELAMTHRSYGGRN-----NERLEFLGDSIVNFVIAEALFQRFPQAREGQL 67
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S LR+ LV +T + + ++ + + ++ R AD +EA +GA+Y+D G
Sbjct: 68 SRLRARLVKGQTLAELAREMEFGECLRLGSGEMKSGGHRRESILADAVEAVIGAIYLDAG 127
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ Q + RL+ L DPK++LQ+ L + +P Y+V+ G
Sbjct: 128 MDVVRQRVLAWYAERLENISLQDTQKDPKTRLQEF------LQSRQAALPRYEVVSVKGE 181
Query: 413 TNSRSYTVAVYFKNERLAKAT---GNSIQQAEMNAAKVA---LQKCP 453
+++++TV Y + L + T G S + AE AA+ A L+K P
Sbjct: 182 AHAQTFTVECYI--DLLTEHTTGKGPSRRHAEQQAAEEALFHLEKTP 226
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + LF FP EG L+ RA +V+ Q LA LA+ + + + G
Sbjct: 43 GDSIVNFVIAEALFQRFPQAREGQLSRLRARLVKGQTLAELAREMEFGECLRLGSGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EA++GA++LD G+DV Q
Sbjct: 103 GGHRRESILADAVEAVIGAIYLDAGMDVVRQ 133
>gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW]
gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW]
Length = 236
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 13/213 (6%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN-QRLEFLGDTVLQLITSDYLYNH 287
L LE G F H LL + T S+G G +RLEFLGD VL L+ +++L
Sbjct: 11 LSELETGLGYHFRHRDLLVQALTHPSLGGVERNAGRGYERLEFLGDRVLGLVIAEWLLER 70
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
FP EG L+ ++LV +VV IG+ F + + D + + AD EA
Sbjct: 71 FPAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDSGGQAKPAILADACEAV 130
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA++ D G+E + + P ++ + + DPK+ LQ+ L G P +P
Sbjct: 131 IGAIFQDGGLEPARTLIRTRWTPLIEADLSPPQ--DPKTALQEWALGR-----GRP-LPA 182
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
Y+ + GP ++ + V V + A ATG S
Sbjct: 183 YETLSREGPDHAPVFRVRVRVEGAEPATATGPS 215
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + L FP EG LA A+V+ + L +A+ IGL F+ A
Sbjct: 55 GDRVLGLVIAEWLLERFPAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDS 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 187
+A+ EA++GA+F DGG++ A + +
Sbjct: 115 GGQAKPAILADACEAVIGAIFQDGGLEPARTLIRT 149
>gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1]
gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1]
Length = 227
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 16/220 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL T RS G N N+RLEFLGD++L + ++ L++ FP+ EG L
Sbjct: 13 GYFFADLGLLELALTHRSYGGKN-----NERLEFLGDSILNYVIAEDLFHRFPKAKEGEL 67
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
S LR+SLV T + + + + F + ++ R AD +E +GAMY+D G
Sbjct: 68 SRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADTVEGIIGAMYLDAG 127
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ C+ + RL LN D K++LQ+ L + +P Y+V+ G
Sbjct: 128 MDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEY------LQARKHGLPQYEVVNIDGE 181
Query: 413 TNSRSYTVAVYFK-NERLAKATGNSIQQAEMNAAKVALQK 451
+ +++ V + + ++ + GNS + AE NAA AL +
Sbjct: 182 PHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAEALSQ 221
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ ++ + LFH FP +EG L+ RA++V+ LA LA+ L DF+ G
Sbjct: 43 GDSILNYVIAEDLFHRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+A+ E ++GA++LD G+D D +V+ KD + R +++
Sbjct: 103 GGFRRDSILADTVEGIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEY 162
Query: 201 MYYPQHPLQEQE 212
+ +H L + E
Sbjct: 163 LQARKHGLPQYE 174
>gi|404329166|ref|ZP_10969614.1| ribonuclease III [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 242
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 35/229 (15%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
FN LL FT S Y N N +RLEFLGD V++L+ S YL+ H+P EG
Sbjct: 29 FNQEELLFEAFTHSS--YVNEHREENLENYERLEFLGDAVMELMVSQYLFKHYPGLSEGD 86
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANII--NPKVDLKMKDRA-----------DLLEA 342
++ LR+ ++VC + G+ FA+ + + + L ++ D+ EA
Sbjct: 87 MTKLRA--------AIVC-ETGLVMFASSLSFDQLIFLGRGEKVTGGQNRPGLLCDVFEA 137
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
F+GA+Y+D+G+EA +F K +PR+ + D KS+LQ+ T++ D GE D
Sbjct: 138 FVGALYLDQGLEAVGRFLKQVVYPRIDDGTFSHVM-DFKSQLQE---TVQRQDLGELD-- 191
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y V + + + V + ++ G S + AE NAA+ AL+K
Sbjct: 192 -YAVTMEMDGERQKGFLAKVLLDGKAISSGQGQSKKDAEQNAAREALKK 239
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +LF +P + EG + RAAIV L A + + + G +
Sbjct: 63 GDAVMELMVSQYLFKHYPGLSEGDMTKLRAAIVCETGLVMFASSLSFDQLIFLGRGEKVT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYP---QHPL 208
+ + FEA +GAL+LD G++ + V+Y + ++ F M + Q +
Sbjct: 123 GGQNRPGLLCDVFEAFVGALYLDQGLEAVGRFLKQVVYPRIDDGTFSHVMDFKSQLQETV 182
Query: 209 QEQ-----------EPDGDRQ 218
Q Q E DG+RQ
Sbjct: 183 QRQDLGELDYAVTMEMDGERQ 203
>gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514]
gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514]
Length = 231
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 100/218 (45%), Gaps = 15/218 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT-LGSNQRLEFLGDTVLQLITSDYL 284
+ L L+ + G F I LL T S+ + T + NQRLEFLGD VLQL+ + L
Sbjct: 1 MPDLNNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHEL 60
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVD------LKMKDRAD 338
Y+ FP+ EG L+ R+ LVN R ++ + A++I + + L+ AD
Sbjct: 61 YSKFPDFGEGPLTKARAKLVNRR--ALAEQGRALNLGAHLILSRGEEAHGGRLRPSALAD 118
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
EA LGA+++D G EA E+F F L +PK +LQ+ L
Sbjct: 119 TFEALLGAIFLDGGFEAVEKFLLARFHDMLAEISALPALENPKGELQEL------LQAKS 172
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
+ P Y V+ GP + R + V LA G S
Sbjct: 173 SEAPQYNVVSTSGPDHDRVFECIVQHNGVELAHGRGKS 210
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + + L+ FPD EG L RA +V + LA + + L ++ + G +
Sbjct: 48 GDAVLQLVLTHELYSKFPDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEE-A 106
Query: 153 HEVELK-HAMANCFEALMGALFLDGGIDVADQ 183
H L+ A+A+ FEAL+GA+FLDGG + ++
Sbjct: 107 HGGRLRPSALADTFEALLGAIFLDGGFEAVEK 138
>gi|449893615|ref|ZP_21788846.1| ribonuclease III [Streptococcus mutans SF12]
gi|449994548|ref|ZP_21822594.1| ribonuclease III [Streptococcus mutans A9]
gi|449185277|gb|EMB87170.1| ribonuclease III [Streptococcus mutans A9]
gi|449255782|gb|EMC53624.1| ribonuclease III [Streptococcus mutans SF12]
Length = 231
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALKK 226
>gi|377556844|ref|ZP_09786523.1| Ribonuclease III [Lactobacillus gastricus PS3]
gi|376167274|gb|EHS86127.1| Ribonuclease III [Lactobacillus gastricus PS3]
Length = 233
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLY 285
+YL G+ F ++ LLA FT S Y N L +R+EFLGD VLQL S+Y+Y
Sbjct: 7 EYLSSEFGIQFKNLDLLAEAFTQAS--YVNEHPKEYLKFYERIEFLGDAVLQLYVSEYIY 64
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+PE +G L+ LR+++V ++ + + + + + ++R D+ E
Sbjct: 65 QRYPELPQGKLTRLRAAMVQEKSFAAFARECHFDQYIRLGKGEEMAGARNRDSLLCDIFE 124
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
+F+GA+Y+D+G EA ++F FP+L + D K+ LQ+ G+ DI
Sbjct: 125 SFIGALYLDQGREAVKKFIARVIFPKLDLGWFDHAV-DSKTSLQEFLQR-----DGDVDI 178
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y ++ G N+ +TV V + + + TG+S + AEM AA+ AL+K
Sbjct: 179 E-YHLLSEGGTENAPEFTVNVSMDGQVIGEGTGSSKKHAEMAAAQAALKK 227
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P++ +G L RAA+VQ + A A+ + ++ G ++
Sbjct: 51 GDAVLQLYVSEYIYQRYPELPQGKLTRLRAAMVQEKSFAAFARECHFDQYIRLGKGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FE+ +GAL+LD G + + + V++
Sbjct: 111 GARNRDSLLCDIFESFIGALYLDQGREAVKKFIARVIF 148
>gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
gi|254807244|sp|B8GAM6.1|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
Length = 229
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 22/209 (10%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSM----GYTNLTLGSNQRLEFLGDTVLQLIT 280
++++L LE + G+ F +LL RS+ + L N+RLEFLGD+VL +T
Sbjct: 1 MVERLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVT 60
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII----NPKVDLKMKDR 336
+ +L+ FP +E L+ R++LV+ + + + + +A + PK + K
Sbjct: 61 TTWLFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTPKGRQRSKLL 120
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPR---LQYFILNQEWNDPKSKLQQCCLTLRT 393
ADL EA +GA+Y+D+G+EA F + R LQ +L DP ++LQ+
Sbjct: 121 ADLFEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVL-----DPTTRLQEI------ 169
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAV 422
+ +P Y +I+ GP + R Y +AV
Sbjct: 170 VQSRHKQLPKYYLIDERGPDHQREYVMAV 198
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+T+ LF FP E L ++RAA+V + LA A + L + + G D
Sbjct: 52 GDSVLHFVTTTWLFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTP 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK----------DNEVRFKQWM- 201
+ +A+ FEA++GA++LD G++ A L++ D R ++ +
Sbjct: 112 KGRQRSKLLADLFEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVLDPTTRLQEIVQ 171
Query: 202 -YYPQHP----LQEQEPDGDRQWV 220
+ Q P + E+ PD R++V
Sbjct: 172 SRHKQLPKYYLIDERGPDHQREYV 195
>gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
Length = 228
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G FN+ LL + T RS + N+RLEFLGD +L +I + L+ FP EG L
Sbjct: 15 GYTFNNEALLEQALTHRSAAKQH-----NERLEFLGDAILGMIIGETLFKRFPTVPEGKL 69
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +RS+LV T + + + + N+ ++ R AD +EA LGA+Y+D G
Sbjct: 70 TRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILGAIYLDSG 129
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ + R+ N D K++LQ+ L G + +P Y+V+ G
Sbjct: 130 MDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEF------LQGRKQALPTYEVLSISGK 183
Query: 413 TNSRSYTVAVYFKNERLAK---ATGNSIQQAEMNAAKVALQK 451
+++++ V K E L A+GNS ++AE AA++ L+K
Sbjct: 184 DHAQTFEVCC--KVESLPDAVVASGNSRRKAEQEAARLTLEK 223
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I LF FP + EG L R+ +V+ LA LAK + + + G
Sbjct: 45 GDAILGMIIGETLFKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLY--------KDNEVRFKQW 200
+A+ EA++GA++LD G+D V D+++ S + KD++ R +++
Sbjct: 105 GGHRRSSILADAVEAILGAIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEF 164
Query: 201 MYYPQHPL 208
+ + L
Sbjct: 165 LQGRKQAL 172
>gi|449876824|ref|ZP_21782982.1| ribonuclease III [Streptococcus mutans S1B]
gi|449976057|ref|ZP_21816088.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449176047|gb|EMB78414.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449251723|gb|EMC49726.1| ribonuclease III [Streptococcus mutans S1B]
Length = 231
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPKKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 17/217 (7%)
Query: 244 RLLARVFTTRSMGYTNLT--------LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
R++ F R + LT L SN+RLEFLGD+VL +I D L++ FPE EG
Sbjct: 15 RVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVCDTLFHLFPEAKEGD 74
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMP---FFANIINPKVDLKMKDRADLLEAFLGAMYIDKG 352
L+ ++S +V+ +T + + +G+ + P A++ E+ +GA+Y+D G
Sbjct: 75 LTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQAPASTLANVFESVVGAIYLDSG 134
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
EA +F P ++ + + KS+LQQ P Y ++E GP
Sbjct: 135 FEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYA------QKNHGTTPTYHLLEEKGP 188
Query: 413 TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+ + + + + + A G + + AE AA+ AL
Sbjct: 189 DHRKCFKILARIGSHQFPPAWGQTKKDAEQRAAQNAL 225
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I LFH+FP+ +EG L ++ +V Q +A+++GL++++L G
Sbjct: 51 GDSVLGMIVCDTLFHLFPEAKEGDLTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +AN FE+++GA++LD G + A
Sbjct: 111 SQAPAS-TLANVFESVVGAIYLDSGFEAA 138
>gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
Length = 234
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
LE +G F +++ L R T S+ + + +RLEFLGD VL L ++ LY+ FPE
Sbjct: 11 LEERTGHRFLNVKRLDRALTHSSVQAP--SRANYERLEFLGDRVLGLTVAEMLYDEFPEA 68
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK-------MKDRADLLEAFL 344
EG LS+ ++LVN T + + ++IG+ A++I+ D+K + RAD++EA +
Sbjct: 69 SEGELSVRLNALVNAETCAAIADEIGL---ADLIHTGSDIKSLNDKRLLNVRADVVEALI 125
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
+Y+D G++A F K F + + D K++LQ+ + P Y
Sbjct: 126 ATIYLDGGLDAVRPFVK--RFWKKRSLQTGAARRDAKTELQEWAHQQGNVH------PAY 177
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+I GP + + V V K G S + AE +AA+ L
Sbjct: 178 SIISRTGPDHDPLFMVEVTVKGFAAETGEGRSKRIAEQHAAEAML 222
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDL--CHEVELKHAMA 162
L+ FP+ EG L+ A+V + A +A IGL D L GSD+ ++ L + A
Sbjct: 61 LYDEFPEASEGELSVRLNALVNAETCAAIADEIGLAD--LIHTGSDIKSLNDKRLLNVRA 118
Query: 163 NCFEALMGALFLDGGIDV 180
+ EAL+ ++LDGG+D
Sbjct: 119 DVVEALIATIYLDGGLDA 136
>gi|417853302|ref|ZP_12498712.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338219907|gb|EGP05498.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 225
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ + L+ L+ G FN LL + T RS + N+RLEFLGD +L I ++ L
Sbjct: 1 MTQNLERLQRQIGYQFNQPALLKQALTHRSAAVKH-----NERLEFLGDAILNFIIAEAL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y+ FP+ +EG LS +R++LV T + + + + ++ ++ R AD +
Sbjct: 56 YHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCV 115
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+ +D + + + + +L+ DPK++LQ+ L G
Sbjct: 116 EAIIGAISLDSDLATTTKIVQHWYQVQLKQIQPGDNQKDPKTRLQE------YLQGKRLP 169
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P Y V+E G + +++TV Y KN +R +G S ++AE AA+ LQ
Sbjct: 170 LPTYNVVEIKGEAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI + L+H FP EG L+ RA +V+ LA LA++ L D++ G
Sbjct: 43 GDAILNFIIAEALYHQFPKCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ +A+C EA++GA+ LD + ++
Sbjct: 103 GGFRRESILADCVEAIIGAISLDSDLATTTKI 134
>gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001]
gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001]
Length = 256
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 12/227 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G +F LL T S + +GS QRLEFLGD VL L ++ LY
Sbjct: 24 LAVLEARIGHVFTDPTLLPLALTHVSKAGPSGRVGSYQRLEFLGDRVLGLAVAETLYRAL 83
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS + LV T + V + N+ ++ + AD+ EA L
Sbjct: 84 PDAEEGELSRRLAGLVRRETCAAVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAIL 143
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+++D G EA + F P D KS LQ+ + R+L IP+Y
Sbjct: 144 GAVFLDAGYEATRAIVQRSFRPGEDTGA--PRGRDAKSALQEWAMA-RSL-----AIPVY 195
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+V+E GP ++ + +AV ++ G S + AE AA+ L +
Sbjct: 196 EVVERSGPDHAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVLDR 242
>gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
Length = 227
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 22/232 (9%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
L+ + G FNH+ L + T RS TNL+ N+RLEFLGD++L LI S +LY+ F
Sbjct: 2 LQKNIGYRFNHLDFLYQSLTHRS---TNLS--HNERLEFLGDSILNLIISKFLYDEFLSK 56
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI----INPKVDLKMKDRADLLEAFLGAM 347
+EG +S RS+LV T S + N +G+ F N+ I LK ++ LEA +GA+
Sbjct: 57 NEGEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKNHGFLKRSILSNALEAIIGAI 116
Query: 348 YIDKG--MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
++D G ++ E + L+++ DPK+KLQ+ L +P Y+
Sbjct: 117 FLDSGSNIKTIENVIMNWYRNHADLINLSRDEKDPKTKLQEH------LQKFHLPLPKYE 170
Query: 406 VIEHVGPTNSRSYTVAV----YFKNER-LAKATGNSIQQAEMNAAKVALQKC 452
+++ VG + + +T+ + K++ + TG ++AE AAK K
Sbjct: 171 LLKSVGYDHEKQFTIVCKVFGFRKSDHFITIGTGKKYKEAEKLAAKHMFDKI 222
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S L+ F EG ++ R+ +V+ L+ +A ++G+ F+ G
Sbjct: 37 GDSILNLIISKFLYDEFLSKNEGEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKN 96
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
H + ++N EA++GA+FLD G ++
Sbjct: 97 HGFLKRSILSNALEAIIGAIFLDSGSNI 124
>gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|238691613|sp|B2TJ22.1|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 232
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
+E GV FN+ L+ T S G N+RLEFLGD+VLQL ++YL+N F +
Sbjct: 9 IENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEYLFNKFKDK 68
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG L+ +RS +V + + + + + + + ++R AD +EA + A+
Sbjct: 69 SEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADAVEAVIAAV 128
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKV 406
Y+DKG+ F + F + I N+ D K+KLQ+ L DG +I I Y++
Sbjct: 129 YLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQE----LLQKDG---EILIQYEL 181
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
+++ GP + R + V + + G S ++AE NAAK AL++
Sbjct: 182 VKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRLEK 229
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF+ F D EG L R+ IV L +AK++ L +++ + G +L
Sbjct: 49 GDSVLQLCITEYLFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
E A+ EA++ A++LD GI
Sbjct: 109 GGRERMSIQADAVEAVIAAVYLDKGI 134
>gi|419857508|ref|ZP_14380214.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB202]
gi|421184278|ref|ZP_15641702.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB318]
gi|421194495|ref|ZP_15651715.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB568]
gi|421197344|ref|ZP_15654521.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB576]
gi|399967562|gb|EJO02035.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB318]
gi|399975572|gb|EJO09623.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB576]
gi|399977913|gb|EJO11884.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB568]
gi|410497772|gb|EKP89241.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB202]
Length = 243
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 12/192 (6%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
QRLEFLGD+V+QLI +DYL+ +P EG L+ +R ++V +++ S G + +
Sbjct: 56 QRLEFLGDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLG 115
Query: 326 NPKVDLKMKDRADLL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++R LL EAF+GA+Y D+G +A F FFP + +E+ D K
Sbjct: 116 KGEELSGARNRDSLLEDIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFF-EEFIDYK 174
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVI-EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
SKLQ+ G DI YKV E + + V V+ ++ + +G SI+ A
Sbjct: 175 SKLQELLQK-----AGSVDIE-YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIA 228
Query: 441 EMNAAKVALQKC 452
E AAK A Q
Sbjct: 229 EKRAAKKAYQDV 240
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +P EEG L R A+VQ++ +H A+ G ++ G +L
Sbjct: 62 GDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELS 121
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + +EA +GAL+ D G
Sbjct: 122 GARNRDSLLEDIWEAFIGALYKDQG 146
>gi|421187978|ref|ZP_15645319.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB419]
gi|421193202|ref|ZP_15650453.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB553]
gi|399966651|gb|EJO01171.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB419]
gi|399973184|gb|EJO07370.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB553]
Length = 231
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 12/192 (6%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
QRLEFLGD+V+QLI +DYL+ +P EG L+ +R ++V +++ S G + +
Sbjct: 44 QRLEFLGDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLG 103
Query: 326 NPKVDLKMKDRADLL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++R LL EAF+GA+Y D+G +A F FFP + +E+ D K
Sbjct: 104 KGEELSGARNRDSLLEDIWEAFIGALYKDQGTKAVFTFLNKAFFPAIDEGFF-EEFIDYK 162
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVI-EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
SKLQ+ G DI YKV E + + V V+ ++ + +G SI+ A
Sbjct: 163 SKLQELLQK-----AGSVDIE-YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIA 216
Query: 441 EMNAAKVALQKC 452
E AAK A Q
Sbjct: 217 EKRAAKKAYQDV 228
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +P EEG L R A+VQ++ +H A+ G ++ G +L
Sbjct: 50 GDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + +EA +GAL+ D G
Sbjct: 110 GARNRDSLLEDIWEAFIGALYKDQG 134
>gi|418293050|ref|ZP_12904973.1| ribonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379064456|gb|EHY77199.1| ribonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 229
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F L+ T RS N N+RLEFLGD +L + + L+NHF
Sbjct: 5 LARLERRLGYQFKDQELMLLALTHRSFAGRN-----NERLEFLGDAILNFVAGEALFNHF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS LR+ LV T +V+ + + + + ++ R AD LEA +
Sbjct: 60 PQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADTLEALI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D GM+ + LQ L DPK++LQ+ L D+P Y
Sbjct: 120 GAIYLDAGMDVARERVVAWLANELQGLTLVDTNKDPKTRLQEF------LQSRACDLPRY 173
Query: 405 KVIEHVGPTNSRSYTV 420
+V++ G + R++ V
Sbjct: 174 EVVDIQGEPHCRTFFV 189
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ LF+ FP EG L+ RA +V+ + LA LA+ L +++ G
Sbjct: 43 GDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EAL+GA++LD G+DVA +
Sbjct: 103 GGFRRESILADTLEALIGAIYLDAGMDVARE 133
>gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
Length = 225
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 16/229 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
K L+ L+ G FN + LL + T RS ++ N+RLEFLGD +L L ++ LY+
Sbjct: 3 KNLERLQRKLGYSFNQVSLLEQALTHRSA-----SINHNERLEFLGDAILNLTIAEALYH 57
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
FP+ +EG LS +R++LV T +++ + + ++ ++ R AD +EA
Sbjct: 58 QFPKCNEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVEA 117
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+GA+ +D + + + L+ DPK++LQ+ L G +P
Sbjct: 118 IIGAISLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQE------YLQGKRLPLP 171
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
Y V++ G + +++TV Y KN +R G S ++AE AA+ LQ
Sbjct: 172 NYNVVDIKGEAHCQTFTVECYVKNIDRTFIGIGASRRKAEQAAAEKILQ 220
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+H FP EG L+ RA +V+ LA LA++ L D++ G + +A+C
Sbjct: 55 LYHQFPKCNEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADC 114
Query: 165 FEALMGALFLDGGIDVADQV----FSSVL--------YKDNEVRFKQWMYYPQHPL 208
EA++GA+ LD + ++ + S+L KD + R ++++ + PL
Sbjct: 115 VEAIIGAISLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQEYLQGKRLPL 170
>gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630]
gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26]
gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932]
gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42]
gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255]
gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55]
gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34]
gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79]
gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196]
gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291]
gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58]
gi|384360443|ref|YP_006198295.1| ribonuclease III [Clostridium difficile BI1]
gi|423082364|ref|ZP_17070956.1| ribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087756|ref|ZP_17076142.1| ribonuclease III [Clostridium difficile 050-P50-2011]
gi|423090834|ref|ZP_17079120.1| ribonuclease III [Clostridium difficile 70-100-2010]
gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile 630]
gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196]
gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291]
gi|357544070|gb|EHJ26076.1| ribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548690|gb|EHJ30550.1| ribonuclease III [Clostridium difficile 002-P50-2011]
gi|357555949|gb|EHJ37571.1| ribonuclease III [Clostridium difficile 70-100-2010]
Length = 236
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 18/237 (7%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
LL +Q E F + + T S N N+RLEFLGD+VL ++ SD
Sbjct: 5 KKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISD 64
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
YL+N EG L+ LR+++V + S V NDI + + + + R AD
Sbjct: 65 YLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRTSILAD 124
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE----WNDPKSKLQQCCLTLRTL 394
EA + A+Y+D G E+ QF ++ I + + D K+ LQ+ L
Sbjct: 125 AFEAVIAAIYLDGGFESARQFI----LHHMENIIYDSRKGNIFRDYKTHLQEV------L 174
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G + Y++IE GP +++ + + V ++ L G S ++AE AAK+AL+K
Sbjct: 175 QGNGENNIWYRLIEEKGPDHNKRFVMEVGINDDVLGIGEGKSKKEAEQLAAKIALKK 231
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +LF+ ++ EG L RA IV L+ +A I L ML G +
Sbjct: 54 GDSVLGIVISDYLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEAT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLYKDNEVR-FKQWMYYPQHP 207
+A+ FEA++ A++LDGG + A Q +++Y + F+ + + Q
Sbjct: 114 GGRHRTSILADAFEAVIAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEV 173
Query: 208 LQ-------------EQEPDGDRQWV 220
LQ E+ PD ++++V
Sbjct: 174 LQGNGENNIWYRLIEEKGPDHNKRFV 199
>gi|428775122|ref|YP_007166909.1| RNAse III [Halothece sp. PCC 7418]
gi|428689401|gb|AFZ42695.1| RNAse III [Halothece sp. PCC 7418]
Length = 228
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD VL + LY +P+ EG LS LRS LVNN Q + FA
Sbjct: 34 NERLEFLGDAVLGFLVGKLLYQKYPQMREGELSRLRSRLVNNEHQ--------LAEFALS 85
Query: 325 INPKVDLKMKDRA-------------DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYF 371
+N L++ A D LEA +GA ++D G+EA EQF + F +
Sbjct: 86 LNLDQHLRLGKGAEKEGTRQNPDVLSDTLEAVIGAYFLDAGIEAVEQFIEPLFSAIAEQV 145
Query: 372 ILNQEWN-DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLA 430
E + + K +LQ+ L L IP Y + + G +++ +TV V +E
Sbjct: 146 TATSELDQNYKGQLQEWALAYCGL------IPRYSIRQETGADHAKEFTVEVRIGSEVYG 199
Query: 431 KATGNSIQQAEMNAAKVALQ 450
G S + AE AAK AL+
Sbjct: 200 VGVGESKKTAEKRAAKAALE 219
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQH-LAHLAKRIGLEDFMLYAHGSDL 151
G+ F+ L+ +P + EG L+ R+ +V N+H LA A + L+ + G++
Sbjct: 41 GDAVLGFLVGKLLYQKYPQMREGELSRLRSRLVNNEHQLAEFALSLNLDQHLRLGKGAEK 100
Query: 152 CHEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSV 188
+ +++ EA++GA FLD GI+ +Q +FS++
Sbjct: 101 EGTRQNPDVLSDTLEAVIGAYFLDAGIEAVEQFIEPLFSAI 141
>gi|407695372|ref|YP_006820160.1| ribonuclease 3 [Alcanivorax dieselolei B5]
gi|407252710|gb|AFT69817.1| Ribonuclease 3 [Alcanivorax dieselolei B5]
Length = 228
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 15/231 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+++ + LE + G F+ L T RS+ + +N+RLEFLGD L I S L
Sbjct: 1 MIEHRERLEKALGYRFSDGERLELALTHRSVSRRH----NNERLEFLGDAQLSQIISTEL 56
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
++ F + EG L+ +R+SLV +T + V ++G+ + + ++ R AD L
Sbjct: 57 FHRFTDAAEGQLTRMRASLVRGQTLAEVARELGLGEYLILGGGELKSGGHRRDSILADTL 116
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GAM ID G +AC + F RL D K++LQ+ L + +
Sbjct: 117 EALIGAMVIDGGEDACREVVLSWFEARLAAISPQSVRKDAKTRLQEW------LQARKYE 170
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P+Y V+ G +S+ V ++ +A+G S ++AE AA+ AL+
Sbjct: 171 LPVYGVLSISGQAPKQSFEVECELSGLKKTFRASGPSRRRAEQQAAEQALE 221
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
I S LFH F D EG L RA++V+ Q LA +A+ +GL ++++ G
Sbjct: 51 IISTELFHRFTDAAEGQLTRMRASLVRGQTLAEVARELGLGEYLILGGGELKSGGHRRDS 110
Query: 160 AMANCFEALMGALFLDGGIDVADQVFSS------------VLYKDNEVRFKQWMYYPQHP 207
+A+ EAL+GA+ +DGG D +V S + KD + R ++W+ ++
Sbjct: 111 ILADTLEALIGAMVIDGGEDACREVVLSWFEARLAAISPQSVRKDAKTRLQEWLQARKYE 170
Query: 208 L 208
L
Sbjct: 171 L 171
>gi|428224460|ref|YP_007108557.1| RNAse III [Geitlerinema sp. PCC 7407]
gi|427984361|gb|AFY65505.1| RNAse III [Geitlerinema sp. PCC 7407]
Length = 231
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 10/212 (4%)
Query: 245 LLARVFTTRSMGYTNLTLGS-NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSL 303
LL R T RS + G N+RLEFLGD VL + LY +P EG ++ RS L
Sbjct: 15 LLRRALTHRSYVNEHPEAGDDNERLEFLGDAVLGFLVGALLYRRYPTMPEGEMTRRRSML 74
Query: 304 VNNR--TQSVVCNDIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQF 359
V+ + + D+G K D + + EA +GA ++D G++A + +
Sbjct: 75 VDQTQLAKVAIALDLGNHLRLGRGVAKADGRQNPSLLSSAFEAVIGAYFLDSGIDAVQVY 134
Query: 360 CKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYT 419
+ F P LQ ++ +Q D K+ LQQ L T +P Y+++ GP +++++T
Sbjct: 135 VERLFGPLLQEWVDSQPSIDAKTYLQQWALAQET-----HQLPRYQLVNQSGPDHAKTFT 189
Query: 420 VAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
++V+ +E S Q+A AA+ AL+K
Sbjct: 190 LSVWIGDECYGIGCDRSKQEASKRAAEAALRK 221
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ L+ +P + EG + R+ +V LA +A + L + + G
Sbjct: 43 GDAVLGFLVGALLYRRYPTMPEGEMTRRRSMLVDQTQLAKVAIALDLGNHLRLGRGVAKA 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ +++ FEA++GA FLD GID A QV+ L+
Sbjct: 103 DGRQNPSLLSSAFEAVIGAYFLDSGID-AVQVYVERLF 139
>gi|407700693|ref|YP_006825480.1| ribonuclease III [Alteromonas macleodii str. 'Black Sea 11']
gi|407249840|gb|AFT79025.1| ribonuclease III [Alteromonas macleodii str. 'Black Sea 11']
Length = 228
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 20/222 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL + T RS + N+RLEFLGD +L +I + L+ FP EG L
Sbjct: 15 GYTFTNESLLEQALTHRSAAKQH-----NERLEFLGDAILGMIVGETLFKRFPTVPEGKL 69
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +RS+LV T + + + + N+ ++ R AD +EA LGA+Y+D G
Sbjct: 70 TRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILGAIYLDSG 129
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ + R+ N D K++LQ+ L G + +P Y+V+ G
Sbjct: 130 MDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEF------LQGRKQALPTYEVLSISGK 183
Query: 413 TNSRSYTVAVYFKNERLAK---ATGNSIQQAEMNAAKVALQK 451
+++++ V+ K E L + A+GNS ++AE AA++ L+K
Sbjct: 184 DHAQTFEVSC--KVESLPEAVVASGNSRRKAEQEAARLTLEK 223
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I LF FP + EG L R+ +V+ LA LAK + + + G
Sbjct: 45 GDAILGMIVGETLFKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLY--------KDNEVRFKQW 200
+A+ EA++GA++LD G+D V D+++ + + KD++ R +++
Sbjct: 105 GGHRRSSILADAVEAILGAIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEF 164
Query: 201 M 201
+
Sbjct: 165 L 165
>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
Length = 229
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
L+YS F + L T R+ N + NQRLEFLGD+VL LI S+++Y +
Sbjct: 13 LQYS----FKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNV 68
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG LS +++ LV+ T + + + + F + + ++R DL EA +GA+
Sbjct: 69 KEGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAI 128
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D +E + F + L +N D K+ LQ+ + P YK
Sbjct: 129 YLDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKI------TPTYKSY 182
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
E+ ++ + V VY K ++ A G S ++AE+NAAK AL++ +I
Sbjct: 183 EY-NENDNIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKALEEIENI 229
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S H++ + +++EG L+ +A +V LA++++++ L DF+L G +
Sbjct: 49 GDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEAS 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E + + + FEA++GA++LD ++ F +YKD
Sbjct: 109 GGRERDNMLEDLFEAIIGAIYLDSNLENTKN-FVMRVYKD 147
>gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1]
gi|81562548|sp|Q6N6C1.1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009]
gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1]
Length = 272
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 99/224 (44%), Gaps = 12/224 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
+E G F LL FT S + S QRLEFLGD VL LI SD LY FP+
Sbjct: 47 IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDI----GMPFFANIINPKVDLKMKDRADLLEAFLGAM 347
EG LS + LV T + V + G+ L+ D+ EA +GA+
Sbjct: 107 DEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGAGAKLRKSVLGDICEAVIGAI 166
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D G EA F + + R++ + DPK+ LQ+ G P P+Y+ +
Sbjct: 167 YLDGGYEAASDFVRRNWTERMRKPA--RSLRDPKTVLQEWAQAR-----GLP-TPVYREV 218
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
E GP + + VAV A+ G S + AE AA L +
Sbjct: 219 ERTGPHHDPQFRVAVILPGLEPAEGLGGSKRAAEKVAASAMLAR 262
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL-EDFMLYAHGSDL 151
G++ I S L+ FPD +EG L+ A +V+ + A +A+ + L E L G+
Sbjct: 87 GDHVLGLIVSDMLYRAFPDADEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGA 146
Query: 152 CHEVELKHAMANCFEALMGALFLDGGIDVA 181
++ K + + EA++GA++LDGG + A
Sbjct: 147 GAKLR-KSVLGDICEAVIGAIYLDGGYEAA 175
>gi|116490531|ref|YP_810075.1| ribonuclease III [Oenococcus oeni PSU-1]
gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
gi|419757837|ref|ZP_14284162.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB304]
gi|419858989|ref|ZP_14381646.1| dsRNA-specific ribonuclease [Oenococcus oeni DSM 20252 = AWRIB129]
gi|122277282|sp|Q04GL2.1|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1]
gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
gi|399905346|gb|EJN92789.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB304]
gi|410497350|gb|EKP88824.1| dsRNA-specific ribonuclease [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 231
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 12/192 (6%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII 325
QRLEFLGD+V+QLI +DYL+ +P EG L+ +R ++V +++ S G + +
Sbjct: 44 QRLEFLGDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLG 103
Query: 326 NPKVDLKMKDRADLL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381
+ ++R LL EAF+GA+Y D+G +A F FFP + +E+ D K
Sbjct: 104 KGEELSGARNRDSLLEDIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFF-EEFIDYK 162
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVI-EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
SKLQ+ G DI YKV E + + V V+ ++ + +G SI+ A
Sbjct: 163 SKLQELLQK-----AGSVDIE-YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIA 216
Query: 441 EMNAAKVALQKC 452
E AAK A Q
Sbjct: 217 EKRAAKKAYQDV 228
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q I + +LF +P EEG L R A+VQ++ +H A+ G ++ G +L
Sbjct: 50 GDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGG 177
+ + +EA +GAL+ D G
Sbjct: 110 GARNRDSLLEDIWEAFIGALYKDQG 134
>gi|449958502|ref|ZP_21809787.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|450139209|ref|ZP_21872433.1| ribonuclease III [Streptococcus mutans NLML1]
gi|450176818|ref|ZP_21886044.1| ribonuclease III [Streptococcus mutans SM1]
gi|449170000|gb|EMB72745.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|449233214|gb|EMC32293.1| ribonuclease III [Streptococcus mutans NLML1]
gi|449244617|gb|EMC42987.1| ribonuclease III [Streptococcus mutans SM1]
Length = 231
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEVFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|410462395|ref|ZP_11315978.1| ribonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984486|gb|EKO40792.1| ribonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 243
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 21/244 (8%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLE 269
P D E S LQ L+ G F LLA T S Y N G N+RLE
Sbjct: 5 PPPDAALAESS----SLQPLDL--GHEFASPALLATALTHSS--YANERGEGTGHNERLE 56
Query: 270 FLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKV 329
FLGD VL+L S+ L++ FPE EG L+LLRS LVN + + + +G+ + +
Sbjct: 57 FLGDAVLELSVSEELFSLFPEAPEGELTLLRSQLVNESSLAAMALRLGLAGHVRLGRGEE 116
Query: 330 DLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQ 385
+ + R +D+ EA +GA+++D G A F F + + D KS+LQ
Sbjct: 117 NQGGRSRPSLLSDVFEAVVGAIFLDGGYAAARTFVSRTFDGQWPERPAAPKTKDFKSRLQ 176
Query: 386 QCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+ T RT P+Y ++ GP + + + V + R A S+++AE AA
Sbjct: 177 E--FTQRTHKA----RPVYALLGSAGPEHDKRFEVRLTLPCGREILAVEKSVKKAEQQAA 230
Query: 446 KVAL 449
++AL
Sbjct: 231 RLAL 234
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF +FP+ EG L R+ +V LA +A R+GL + G +
Sbjct: 59 GDAVLELSVSEELFSLFPEAPEGELTLLRSQLVNESSLAAMALRLGLAGHVRLGRGEENQ 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHP 207
+++ FEA++GA+FLDGG A + F S + QW P P
Sbjct: 119 GGRSRPSLLSDVFEAVVGAIFLDGGY-AAARTFVSRTFDG------QWPERPAAP 166
>gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
Length = 228
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 254 SMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSV 311
++ + +L +G NQRLEFLGD VL L+ ++YLY HFP EG L R+SLV+ + +
Sbjct: 25 ALKHPSLDIGVEDNQRLEFLGDAVLDLVIAEYLYQHFPSEEEGRLDRRRASLVSGKALAP 84
Query: 312 VCNDIGMPFFANII------NPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF 365
++G+ + +P+ M + D LEA +GA+Y+D G++A + + F
Sbjct: 85 KALELGLNTVLVVSEAQRTHHPEPSKGMLE--DALEALIGAIYLDAGLDAARRSIRHIFA 142
Query: 366 PRLQYFILNQEWND-PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYF 424
P L + K++LQ+ R G +P Y +I GP ++R Y V+V
Sbjct: 143 PELAAMAEGSPHDSRAKNRLQEWTQKHRQ--GAQPK---YALIGSEGPDHARVYHVSVSL 197
Query: 425 KNERLAKATG 434
+E L +G
Sbjct: 198 DDEELGTGSG 207
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L+ FP EEG L RA++V + LA A +GL ++ +
Sbjct: 45 GDAVLDLVIAEYLYQHFPSEEEGRLDRRRASLVSGKALAPKALELGLNTVLVVSEAQRTH 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
H K + + EAL+GA++LD G+D A
Sbjct: 105 HPEPSKGMLEDALEALIGAIYLDAGLDAA 133
>gi|241895655|ref|ZP_04782951.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
33313]
gi|241871022|gb|EER74773.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
33313]
Length = 232
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 19/236 (8%)
Query: 225 LLKQLQY-LEYSSGVIFNHIRLLARVFTTRSM-----GYTNLTLGSNQRLEFLGDTVLQL 278
+ KQLQ L + FN ++LL T + GY G QRLEFLGD V+Q
Sbjct: 1 MFKQLQADLATDHHIHFNDLKLLEEALTQANYINEHPGYKG---GDYQRLEFLGDAVMQQ 57
Query: 279 ITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR-- 336
T+ YL+ FP EG L+ LR S+V R + + ++ + + + + ++R
Sbjct: 58 STAVYLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDS 117
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAF+GA+++D+G E F + F ++ +Q + D KSKLQ+
Sbjct: 118 LLEDLWEAFIGALFLDQGQEVVMNFLEEMMFVKIDEGFYDQ-FVDYKSKLQEYLQR---- 172
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
G I K+ E N + +T+ V + LA G S + AE AA+ A Q
Sbjct: 173 -HGTVKIAYTKLDEQAISNNEQVFTIQVSVDGKPLATGEGKSTKDAEKMAARKAYQ 227
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q T+++LF FP+ +EG L R ++VQ + A L++ + L+ ++ G +L
Sbjct: 51 GDAVMQQSTAVYLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+ + +EA +GALFLD G +V +++ K +E + Q++ Y + LQE
Sbjct: 111 GARNRDSLLEDLWEAFIGALFLDQGQEVVMNFLEEMMFVKIDEGFYDQFVDY-KSKLQE 168
>gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 251
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 27/214 (12%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
++ +G +F IRLL T S TN NQRLEFLGD VL L+ +D L+ FP
Sbjct: 15 VKAKTGYVFKDIRLLETALTHSSAVKAATN-----NQRLEFLGDRVLGLVVADMLFEKFP 69
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPF-FANIINPKVDLKMKDR-------ADLLE 341
+ EG ++ ++LV+ RT C++IG+ +++ LKM+ R AD +E
Sbjct: 70 DAPEGEIAPRFNALVDART----CSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVE 125
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A + A+Y+D G+EA +F + PR + ++ + N PKS LQ+ +
Sbjct: 126 ALIAAVYVDGGIEAARRFVLRYWEPR-SHTVIAKPLN-PKSDLQEWIAKTSDIR------ 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGN 435
P Y + + GP + +TV++ + TG
Sbjct: 178 PEYVIDKREGPDHQPVFTVSLQVRGFAPISGTGG 211
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + LF FPD EG +A A+V + + + + LED + +
Sbjct: 52 GDRVLGLVVADMLFEKFPDAPEGEIAPRFNALVDARTCSEIGIEMQLEDLVRADSALKMR 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ EAL+ A+++DGGI+ A
Sbjct: 112 SRGSGGNYLADAVEALIAAVYVDGGIEAA 140
>gi|333987406|ref|YP_004520013.1| ribonuclease 3 [Methanobacterium sp. SWAN-1]
gi|333825550|gb|AEG18212.1| Ribonuclease 3 [Methanobacterium sp. SWAN-1]
Length = 217
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 106/191 (55%), Gaps = 16/191 (8%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI- 324
+RLEFLGDTVL L+ S++LYN +EG L+ +RS+ V + ++G+ + +
Sbjct: 37 ERLEFLGDTVLDLVVSEFLYNMDSNLNEGQLTRMRSNYVCKKALYAYSKELGLDQYIKLG 96
Query: 325 INPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE--WNDP 380
P++ + D +D+ E+F+GA+Y+D+G++ ++F P + N++ + D
Sbjct: 97 AGPELTRREIDSVISDVFESFIGALYLDQGLDIVKEFLSKTVIPHIN----NRDIFFYDY 152
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
KS+L+Q C D DI Y++I+ G +++ +T+A + G S ++A
Sbjct: 153 KSELKQLC------DHDCLDIA-YELIKEEGEPHNKKFTMAAIINGKNYGTGCGGSKKEA 205
Query: 441 EMNAAKVALQK 451
E NAAK+AL +
Sbjct: 206 EQNAAKIALGR 216
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S L+++ ++ EG L R+ V + L +K +GL+ ++ G +L
Sbjct: 43 GDTVLDLVVSEFLYNMDSNLNEGQLTRMRSNYVCKKALYAYSKELGLDQYIKLGAGPELT 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E+ +++ FE+ +GAL+LD G+D+ + S +
Sbjct: 103 RR-EIDSVISDVFESFIGALYLDQGLDIVKEFLSKTV 138
>gi|410584608|ref|ZP_11321710.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
gi|410504194|gb|EKP93706.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
Length = 284
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 122/306 (39%), Gaps = 59/306 (19%)
Query: 161 MANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWV 220
M AL G F GG + D E RF + GD WV
Sbjct: 1 MNPAGPALAGEPFPGGGQA---PPAGAARADDRETRFPRA--------------GDPGWV 43
Query: 221 E------------QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRL 268
E P L+ L + Y S + + N+RL
Sbjct: 44 EAVAALTGVAPARPEPFLEALTHASYRSE-------------------HPDTAGPDNERL 84
Query: 269 EFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK 328
EFLGD VL L +DY++ +P+ EG LS LR+++V T + +G+ + +
Sbjct: 85 EFLGDAVLNLCVTDYIFRTYPQRPEGELSKLRAAVVRAETLAATAQRLGLGELLRLGRGE 144
Query: 329 VDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-NDPKSK 383
+ R AD EA + A+Y+ +G+E F ++ + +DPK+
Sbjct: 145 EATGGRQRPSVLADAYEAMVAAVYLQEGLEGARAFILRTLGDDIRRLAESSGACDDPKTA 204
Query: 384 LQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMN 443
LQ+ R L GE P Y+V+ GP + YTV V LA+A G S + AE
Sbjct: 205 LQELS---RRLGLGE---PTYRVVGAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAERE 258
Query: 444 AAKVAL 449
AA++AL
Sbjct: 259 AARMAL 264
>gi|357975276|ref|ZP_09139247.1| ribonuclease III [Sphingomonas sp. KC8]
Length = 223
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 253 RSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVV 312
R++ + + S +RLEFLGD VL LI + +LY FP+ EG LS +S+V+ T + V
Sbjct: 25 RALTHGSHGAASYERLEFLGDRVLGLIAAAWLYERFPDEPEGSLSRRINSIVSRETCAEV 84
Query: 313 CNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRL 368
+G+P + + D + D +EA +GA+Y++ G +A F + + P
Sbjct: 85 GRALGVPGWLRLGKQARDDGAVNSDNVVGDAVEALIGALYLEAGHDAAVAFVRRAWTP-- 142
Query: 369 QYFILNQEW--NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKN 426
F+ Q PKS LQ+ R P+Y + GP ++ +TV V
Sbjct: 143 --FVDGQRSAPRHPKSALQEWAAANRCRP------PVYTMAARSGPHHAPRFTVVVTLPG 194
Query: 427 ERLAKAT--GNSIQQAEMNAAKVALQK 451
A+A+ G S Q+AE AAK L+K
Sbjct: 195 RTGAEASAEGTSKQEAETAAAKALLEK 221
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + L+ FPD EG L+ +IV + A + + +G+ ++ +
Sbjct: 44 GDRVLGLIAAAWLYERFPDEPEGSLSRRINSIVSRETCAEVGRALGVPGWLRLGKQARDD 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
V + + + EAL+GAL+L+ G D A
Sbjct: 104 GAVNSDNVVGDAVEALIGALYLEAGHDAA 132
>gi|331269661|ref|YP_004396153.1| ribonuclease III [Clostridium botulinum BKT015925]
gi|329126211|gb|AEB76156.1| Ribonuclease III [Clostridium botulinum BKT015925]
Length = 236
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 17/241 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L +E V FN I LL T S N + SN+RLEFLGD++LQL S+ LYN +
Sbjct: 9 LNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISELLYNKY 68
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
+ EG L+ R+ +V + V + + + N+ + + R +D +EA +
Sbjct: 69 EQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAII 128
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
++Y+D+G E ++F F +Q +Q D K+KLQ+ G+ +I Y
Sbjct: 129 ASIYLDQGYEVAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKF-----GDYNIE-Y 182
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKR 464
+++ GP + R + V +E G S ++AE NAAK AL+ LD++KR
Sbjct: 183 RLVSFDGPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK-------GLDNEKR 235
Query: 465 V 465
+
Sbjct: 236 I 236
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q S L++ + EG L RA IV L +AK + ++ + G ++
Sbjct: 52 GDSILQLCISELLYNKYEQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMT 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLYKDN 193
+++C EA++ +++LD G +VA + F+ ++ K N
Sbjct: 112 GGRTRTSILSDCVEAIIASIYLDQGYEVAKKFIIDNFNEIIQKAN 156
>gi|119774017|ref|YP_926757.1| ribonuclease III [Shewanella amazonensis SB2B]
gi|189043345|sp|A1S3Y1.1|RNC_SHEAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|119766517|gb|ABL99087.1| RNAse III [Shewanella amazonensis SB2B]
Length = 226
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 20/232 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L L + G F+ IRLL + T RS + N+RLEFLGD++L ++ SD L+
Sbjct: 4 IKNLPRLCRTLGYEFSDIRLLEQALTHRSASNQH-----NERLEFLGDSILSIVISDALF 58
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ FP+ EG LS +R++LV T +V+ + + + N+ ++ R AD +E
Sbjct: 59 HQFPKATEGDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKSGGFRRESILADAVE 118
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y+D +E C + RL D K+ LQ+ L G + +
Sbjct: 119 AIIGAVYLDADLETCRSLLLGWYETRLADIKPGVGQKDAKTLLQEY------LQGMKKPL 172
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKA---TGNSIQQAEMNAAKVALQ 450
P Y+V + G + +++TV + LA A G+S ++AE AA L+
Sbjct: 173 PEYQVTQVEGEAHDQTFTVECRVTD--LADAVVGVGSSRRKAEQMAAAQVLE 222
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S LFH FP EG L+ RA +V+ LA +AK L D++ G
Sbjct: 45 GDSILSIVISDALFHQFPKATEGDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGID-------------VADQVFSSVLYKDNEVRFKQ 199
+ +A+ EA++GA++LD ++ +AD + V KD + ++
Sbjct: 105 GGFRRESILADAVEAIIGAVYLDADLETCRSLLLGWYETRLAD-IKPGVGQKDAKTLLQE 163
Query: 200 WMYYPQHPLQE 210
++ + PL E
Sbjct: 164 YLQGMKKPLPE 174
>gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
Length = 259
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 244 RLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRS 301
+LL T S + N G +NQRLEFLGD VL + +YLY + + EG L+ +R+
Sbjct: 48 QLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLYLKYRDKPEGELTKMRA 107
Query: 302 SLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACE 357
++VN T + IG+ + + ++R AD LEA +GA+Y+ G E
Sbjct: 108 AVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALEAVIGAVYLQYGFEEVR 167
Query: 358 QFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEHVGPTNSR 416
F P ++ I + D K+ LQ+ + D+ + Y++I+ GP +++
Sbjct: 168 SFILKMLVPEIEA-IDKGNYGDFKTILQERAQ--------KEDMEVSYRIIDEQGPDHNK 218
Query: 417 SYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+T VY +N K TG + ++AE +AA++AL+
Sbjct: 219 LFTAGVYVQNNFYGKGTGKTKKEAEQHAARLALE 252
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ +L+ + D EG L RAA+V LA A+ IG+ + G
Sbjct: 78 GDAVLDFVIGEYLYLKYRDKPEGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYS 137
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
E +A+ EA++GA++L G +
Sbjct: 138 GGRERASILADALEAVIGAVYLQYGFE 164
>gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
gi|90101647|sp|Q4L5T5.1|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
Length = 245
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 23/229 (10%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G +++I L + F+ S + L N+RLEFLGD VL+L S YL++ P+ EG
Sbjct: 25 GFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKHPDLPEG 84
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMY 348
+L+ +R+++V + + N I + I+ K + K R +D EAF+GA+Y
Sbjct: 85 NLTKMRATIVCEPSLVIFANKIELNQL--ILLGKGEEKTGGRTRPSLVSDAFEAFVGALY 142
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
+D+G++ QF + FP ++ + E D K++ Q+ + D Y+
Sbjct: 143 LDQGLDVVWQFAEKVIFP----YVEDDELVGVVDFKTQFQEYVHSQNRGD------VTYR 192
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
+I+ GP + R +T V +NE +A G + +++E AA+ A K S
Sbjct: 193 LIKEEGPAHHRLFTSEVILENEAVATGQGKTKKESEQKAAESAYSKLKS 241
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF PD+ EG L RA IV L A +I L +L G +
Sbjct: 62 GDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+++ FEA +GAL+LD G+DV Q V++
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQGLDVVWQFAEKVIF 159
>gi|381209990|ref|ZP_09917061.1| ribonuclease III [Lentibacillus sp. Grbi]
Length = 227
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L +LE + FN LL + FT S + + N+RLEFLGD VL+L S YLY
Sbjct: 3 LSHLEQQLDITFNDQSLLKQAFTHSSYVNEHRDKNFSDNERLEFLGDAVLELGVSQYLYK 62
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
EG L+ LR+S+V + ++ + + + ++R AD+ EA
Sbjct: 63 QKERLAEGDLTKLRASIVCEPSLVEFSRELDFGDYLFLGKGEEQSGGRERPAILADVFEA 122
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR--TLDGGEPD 400
FLGA+Y+D+G + QF K +P++ + D KSKLQ+ R ++D
Sbjct: 123 FLGALYLDQGYDVVIQFLKQHVYPKITTGAFSHAM-DYKSKLQEQVQQTRNHSID----- 176
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
Y + + GP++ + + V N + G++ ++AE AAK AL
Sbjct: 177 ---YVIADEKGPSHDKEFIAQVIINNHVSGEGAGHTKKEAEQRAAKHAL 222
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 87 YMYIHKGNNFS-----QFI--------TSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHL 133
Y+ H+ NFS +F+ S +L+ + EG L RA+IV L
Sbjct: 29 YVNEHRDKNFSDNERLEFLGDAVLELGVSQYLYKQKERLAEGDLTKLRASIVCEPSLVEF 88
Query: 134 AKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KD 192
++ + D++ G + E +A+ FEA +GAL+LD G DV Q +Y K
Sbjct: 89 SRELDFGDYLFLGKGEEQSGGRERPAILADVFEAFLGALYLDQGYDVVIQFLKQHVYPKI 148
Query: 193 NEVRFKQWMYYPQHPLQEQ 211
F M Y + LQEQ
Sbjct: 149 TTGAFSHAMDY-KSKLQEQ 166
>gi|386358044|ref|YP_006056290.1| ribonuclease III [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365808552|gb|AEW96768.1| ribonuclease III [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 222
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 11/179 (6%)
Query: 248 RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307
R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++VN+R
Sbjct: 2 RALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRVHPDLPEGQLAKLRAAVVNSR 61
Query: 308 TQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVC 363
+ V + + F + + +++ AD LEA +GA+Y+D+G++A +
Sbjct: 62 ALAEVARGLELGRFVRLGRGEEGTGGRNKASILADTLEAVIGAVYLDQGLDAASELVHRL 121
Query: 364 FFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAV 422
F P ++ D K+ LQ+ T +P Y V E GP + +++T A
Sbjct: 122 FDPLIEKSSNLGAGLDWKTSLQELTATEAL------GVPEYLVTES-GPDHEKTFTAAA 173
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ V PD+ EG LA RAA+V ++ LA +A+ + L F+ G +
Sbjct: 26 GDSVLGLVVTDTLYRVHPDLPEGQLAKLRAAVVNSRALAEVARGLELGRFVRLGRGEEGT 85
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 86 GGRNKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 145
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 146 TATEALGVPEYLVTESGPDHEKTFT 170
>gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25]
gi|259491960|sp|C3K6Y7.1|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25]
Length = 229
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F L+ T RS N N+RLEFLGD +L + + L+ F
Sbjct: 5 LARLERQLGYTFKDQELMVLALTHRSFAGRN-----NERLEFLGDAILNFVAGEALFERF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS LR+ LV T +V+ G+ + + + ++ R AD LEA +
Sbjct: 60 PQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D GMEA ++ ++ L DPK++LQ+ L ++P Y
Sbjct: 120 GAIYLDAGMEAAKERVTAWLTSEIESLTLVDTNKDPKTRLQEF------LQSRGCELPRY 173
Query: 405 KVIEHVGPTNSRSYTV--AVYFKNERLAKATGNSIQQAE 441
+V++ G + R + V + NE+ ++ G S + AE
Sbjct: 174 EVVDIQGEPHCRVFFVECEITLLNEK-SRGQGVSRRIAE 211
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ LF FP EG L+ RA +V+ + LA LA+ GL +++ G
Sbjct: 43 GDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+ +A+ EAL+GA++LD G++ A + ++ L + E
Sbjct: 103 GGFRRESILADALEALIGAIYLDAGMEAAKERVTAWLTSEIE 144
>gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180]
gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180]
Length = 225
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 16/227 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
+ L + G F LL + T RS+G +N N+RLEFLGD ++ + ++ L+ FP
Sbjct: 6 RRLAQALGHRFTREELLIQALTHRSVGSSN-----NERLEFLGDALIGFVIAEALWERFP 60
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDI----GMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ EG LS +R+SLV + + + D+ + A + + AD LEA LG
Sbjct: 61 KADEGTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRTGGHARDSILADALEAVLG 120
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D G E F RL+ + DPK++LQ+ + + P +P Y
Sbjct: 121 AVYLDAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEWLQSYK-----RP-LPEYL 174
Query: 406 VIEHVGPTNSRSYTVAVYFKNERL-AKATGNSIQQAEMNAAKVALQK 451
V+ G + +++ V+ ++ + + TG S ++AE AA+ L++
Sbjct: 175 VLSIDGDQHDQTFIVSCQLQDADVTTRGTGTSRRRAEQAAAESMLER 221
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + L+ FP +EG L+ RA++V+ + LA LA+ + L D + G
Sbjct: 43 GDALIGFVIAEALWERFPKADEGTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRT 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLY--------KDNEVRFKQW 200
+A+ EA++GA++LD G + V ++F++ L KD + R ++W
Sbjct: 103 GGHARDSILADALEAVLGAVYLDAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEW 162
Query: 201 MYYPQHPLQE 210
+ + PL E
Sbjct: 163 LQSYKRPLPE 172
>gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305]
gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305]
Length = 223
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 16/227 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
QL+ L+ G F + L + T RS N N+RLEFLGD++L LY+
Sbjct: 2 QLERLQKKLGYQFETLDYLTQALTHRSAASKN-----NERLEFLGDSILNFTIGKALYDK 56
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
FP+ EG LS +R++LV +T +V+ + + + ++ R +D +EA
Sbjct: 57 FPKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAI 116
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ A+Y+DKGME + + L + DPK++LQ+ L G + +P
Sbjct: 117 IAAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEF------LQGRKLPLPE 170
Query: 404 YKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
Y+VI+ G +++++ V + E + G S ++AE N A+ L
Sbjct: 171 YEVIDIKGEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVAEKVL 217
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F L+ FP +EG L+ RAA+V+ Q LA +A++ L +++ G
Sbjct: 41 GDSILNFTIGKALYDKFPKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKS 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+ +++C EA++ A++LD G++ A ++ KD + R +++
Sbjct: 101 GGFRRESILSDCVEAIIAAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEF 160
Query: 201 MYYPQHPLQEQE 212
+ + PL E E
Sbjct: 161 LQGRKLPLPEYE 172
>gi|389756848|ref|ZP_10191587.1| ribonuclease III [Rhodanobacter sp. 115]
gi|388431197|gb|EIL88290.1| ribonuclease III [Rhodanobacter sp. 115]
Length = 219
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 19/209 (9%)
Query: 249 VFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRT 308
T RSMG N N+RLEFLGD +L ++ LY P+ EG LS LR+ LVN +
Sbjct: 16 ALTHRSMGKPN-----NERLEFLGDALLGAFVAEMLYEVHPKASEGELSRLRAQLVNGQA 70
Query: 309 QSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCF 364
+V+ ++ + + + ++ R AD EA L A+++D G+EAC + F
Sbjct: 71 LAVIARELELGDRLKLGSGELKSGGFRRDSILADAFEAMLAAIHLDGGLEACRNTVREIF 130
Query: 365 FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV--AV 422
R+ L + D K++LQ+ L G +P Y++ + G ++R++ V AV
Sbjct: 131 TDRIA--ALPRSSKDAKTRLQEW------LQGHGLPLPHYELKDSYGEDHARTFDVSCAV 182
Query: 423 YFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ +A+ +GNS + AE AA+V L +
Sbjct: 183 SEPQDIIAEGSGNSRRAAEQEAAEVVLAR 211
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164
L+ V P EG L+ RA +V Q LA +A+ + L D + G +A+
Sbjct: 46 LYEVHPKASEGELSRLRAQLVNGQALAVIARELELGDRLKLGSGELKSGGFRRDSILADA 105
Query: 165 FEALMGALFLDGGID----VADQVFSSVL------YKDNEVRFKQWMYYPQHPL 208
FEA++ A+ LDGG++ ++F+ + KD + R ++W+ PL
Sbjct: 106 FEAMLAAIHLDGGLEACRNTVREIFTDRIAALPRSSKDAKTRLQEWLQGHGLPL 159
>gi|409400301|ref|ZP_11250411.1| ribonuclease III [Acidocella sp. MX-AZ02]
gi|409130686|gb|EKN00433.1| ribonuclease III [Acidocella sp. MX-AZ02]
Length = 223
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F+ LL+ T RS +GSN+RLEF+GD VL LI +++L FP EG L
Sbjct: 15 FSRPALLSEALTHRSAAGAK-GVGSNERLEFIGDRVLGLIVAEWLSERFPNEQEGKLGPR 73
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEA 355
++LV+ + V + N+ + + + AD +EA +GA+Y+D G+EA
Sbjct: 74 LAALVSKPALAAVAEAHNVGAMLNVAPGEAKRGVSTQPNVLADAVEAMIGALYLDAGLEA 133
Query: 356 CEQFCKVCFFPRLQYFILNQEW--NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
F L+ + Q DPK+ LQ+ L + +P+Y+ +E GP+
Sbjct: 134 ARAFVHRV----LEDVVEAQAAPPKDPKTALQEWALKRGQI------LPLYETLEQSGPS 183
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
++ + V V E A A + + AE AA++ L + P
Sbjct: 184 HAPLFVVRVSVGVES-ATAQAGAKRAAEQEAARLLLGQLP 222
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + L FP+ +EG L AA+V LA +A+ + + A G
Sbjct: 46 GDRVLGLIVAEWLSERFPNEQEGKLGPRLAALVSKPALAAVAEAHNVGAMLNVAPGEAKR 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----------KDNEVRFKQW 200
+ +A+ EA++GAL+LD G++ A VL KD + ++W
Sbjct: 106 GVSTQPNVLADAVEAMIGALYLDAGLEAARAFVHRVLEDVVEAQAAPPKDPKTALQEW 163
>gi|348671015|gb|EGZ10836.1| hypothetical protein PHYSODRAFT_337611 [Phytophthora sojae]
Length = 492
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 40/244 (16%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTN-------LTLGSNQRLEFLGDTVLQLITS 281
L+ L+ GV F + LL T N + SN+ LEFLGD++L +
Sbjct: 253 LEQLQKRIGVQFQDVTLLKSALTHHGCLPMNPVPEDIPVVRLSNRSLEFLGDSLLGAAAA 312
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM----------------PFFANII 325
Y+Y P H EG LS +S+LV N T S + ++G+ PF I+
Sbjct: 313 AYVYQMLPRHQEGQLSRAKSALVKNETLSTISKELGITDLLLWPIEFKEARAAPF---IV 369
Query: 326 NPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPR-LQYFILNQEWNDPKSKL 384
+V + A +E+ +GA+Y+D+GME F PR ++Y + W +P +L
Sbjct: 370 KGRVTIA----AGAVESLIGAIYLDQGMETAMNFVATQILPRSVEYATRDVIW-EPIVEL 424
Query: 385 QQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNA 444
Q L G P++K + P NS YTV +Y K + KATG S + A A
Sbjct: 425 QNL------LQGHYYGTPVFKYL--PAPVNSGKYTVELYVKGRPILKATGASYKLARGRA 476
Query: 445 AKVA 448
A+ A
Sbjct: 477 AEAA 480
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 21/102 (20%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + +++ + P +EG L+ ++A+V+N+ L+ ++K +G+ D +L+
Sbjct: 303 GDSLLGAAAAAYVYQMLPRHQEGQLSRAKSALVKNETLSTISKELGITDLLLWP------ 356
Query: 153 HEVELKHAMANCF-------------EALMGALFLDGGIDVA 181
+E K A A F E+L+GA++LD G++ A
Sbjct: 357 --IEFKEARAAPFIVKGRVTIAAGAVESLIGAIYLDQGMETA 396
>gi|335429770|ref|ZP_08556668.1| ribonuclease III [Haloplasma contractile SSD-17B]
gi|334889780|gb|EGM28065.1| ribonuclease III [Haloplasma contractile SSD-17B]
Length = 239
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 13/221 (5%)
Query: 240 FNHIRLLARVFTTRSMGYTNLT--LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
F LL R T S + T L N+RLEFLGD VL+L S YL+ + P+ +EG ++
Sbjct: 21 FKDRSLLIRALTHSSYVNEHRTEDLKDNERLEFLGDAVLELAMSRYLFLNLPDVNEGVMT 80
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGM 353
R+ V + + N I + + + + R AD EA LGA+Y+D G
Sbjct: 81 KRRAQYVCEPSLELYANKINLGKLIRLGKGEEHTGGRKRPAILADAFEALLGAIYLDLGF 140
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
+ F FP ++ L+ D KSKLQ+ T D Y +++ +GP
Sbjct: 141 DQVYDFLGKVAFPAIKAGTLSHVM-DYKSKLQELVQT----DSARS--VTYLIVDEIGPA 193
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
+++++ V ++ G+S ++AE NAAK+AL+K S
Sbjct: 194 HNKTFVAEVSMDEIKMGVGEGHSKKEAEQNAAKIALEKMAS 234
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF PD+ EG + RA V L A +I L + G +
Sbjct: 55 GDAVLELAMSRYLFLNLPDVNEGVMTKRRAQYVCEPSLELYANKINLGKLIRLGKGEEHT 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ FEAL+GA++LD G D
Sbjct: 115 GGRKRPAILADAFEALLGAIYLDLGFD 141
>gi|114564093|ref|YP_751607.1| ribonuclease III [Shewanella frigidimarina NCIMB 400]
gi|122299035|sp|Q07YZ6.1|RNC_SHEFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|114335386|gb|ABI72768.1| RNAse III [Shewanella frigidimarina NCIMB 400]
gi|211926923|dbj|BAG82671.1| ribonuclease III [Shewanella sp. SIB1]
Length = 226
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 16/230 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L L + G FN+I LL + T RS + N+RLEFLGD++L + SD LY
Sbjct: 4 IKNLPRLCRTLGYEFNNIELLIQALTHRSAANKH-----NERLEFLGDSILSIAISDALY 58
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ FP+ EG LS +R++LV T +++ + + + + ++ R AD +E
Sbjct: 59 HQFPKATEGDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKSGGFRRESILADAVE 118
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y+D +E C + + RL DPK+ LQ+ L G + +
Sbjct: 119 AIIGAVYLDADIEVCRKLLLSWYQERLAEIKPGINQKDPKTILQEY------LQGFKKPL 172
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
P Y+V+ G + +++TV +++ +S ++AE AA L+
Sbjct: 173 PDYQVVAVEGEAHDQTFTVECKISELDKVVTGVASSRRKAEQLAAAQVLE 222
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ S L+H FP EG L+ RA +V+ L +AK L D++ G
Sbjct: 45 GDSILSIAISDALYHQFPKATEGDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 187
+ +A+ EA++GA++LD I+V ++ S
Sbjct: 105 GGFRRESILADAVEAIIGAVYLDADIEVCRKLLLS 139
>gi|421616853|ref|ZP_16057854.1| ribonuclease III [Pseudomonas stutzeri KOS6]
gi|409781083|gb|EKN60687.1| ribonuclease III [Pseudomonas stutzeri KOS6]
Length = 229
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F L+ T RS N N+RLEFLGD +L + + L+NHF
Sbjct: 5 LARLERRLGYQFKDQELMLLALTHRSYAGRN-----NERLEFLGDAILNFVAGEALFNHF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS LR+ LV T +V+ + + + + ++ R AD LEA +
Sbjct: 60 PQAREGQLSRLRARLVKGETLAVLARGFELGDYMRLGSGELKSGGYRRESILADTLEALI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D GM+ + LQ L DPK++LQ+ L D+P Y
Sbjct: 120 GAIYLDGGMDVARERVIAWLANELQGLTLVDTNKDPKTRLQEF------LQSRACDLPRY 173
Query: 405 KVIEHVGPTNSRSYTV 420
+V++ G + R++ V
Sbjct: 174 EVVDIQGEPHCRTFFV 189
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ LF+ FP EG L+ RA +V+ + LA LA+ L D+M G
Sbjct: 43 GDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLAVLARGFELGDYMRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EAL+GA++LDGG+DVA +
Sbjct: 103 GGYRRESILADTLEALIGAIYLDGGMDVARE 133
>gi|332638233|ref|ZP_08417096.1| ribonuclease III [Weissella cibaria KACC 11862]
Length = 232
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 225 LLKQLQY-LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITS 281
+ KQLQ L S + FN + LL T + + N T QRLEFLGD V+Q T+
Sbjct: 1 MFKQLQAELALSYNIHFNDVSLLEEALTQANYINEHPNYTGNDYQRLEFLGDAVMQQSTA 60
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
YL+ +PE EG L+ LR S+V R + + ++ + + + + ++R
Sbjct: 61 VYLFKRYPEWDEGRLTELRISMVQTRAFAALSRELHLDQYVQLGRGEELSGARNRDSLLE 120
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
DL EAF+GA+++D+G + F F ++ ++ + D KSKLQ+ G
Sbjct: 121 DLWEAFIGALFLDQGQDVVMHFLGDIMFNKIDEGFYDR-FVDYKSKLQEHLQR-----HG 174
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
I K+ E N + +TV V ++ LA G S ++AE AA+ A Q
Sbjct: 175 SVKITYTKLGERPVENNEQIFTVQVAVNDQVLATGEGKSTKEAEKVAARAAYQ 227
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q T+++LF +P+ +EG L R ++VQ + A L++ + L+ ++ G +L
Sbjct: 51 GDAVMQQSTAVYLFKRYPEWDEGRLTELRISMVQTRAFAALSRELHLDQYVQLGRGEELS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + +EA +GALFLD G DV +++
Sbjct: 111 GARNRDSLLEDLWEAFIGALFLDQGQDVVMHFLGDIMF 148
>gi|366085817|ref|ZP_09452302.1| ribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 231
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 21/208 (10%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G+ F+ + LL FT S Y N L L N+RLEFLGD VL+L SDYLY FP+
Sbjct: 15 GIEFHDLSLLDEAFTHSS--YVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRKFPDKP 72
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMY 348
EG L+ +R++ V S + + + + + R DL EAF GA+Y
Sbjct: 73 EGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEAFNGALY 132
Query: 349 IDKGMEACEQFCKVCFFPRLQY--FILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+D+G +A +F + FP++ F NQ D K+ LQ+ G+ I +Y +
Sbjct: 133 LDQGRKANIKFAEQIIFPKIDAGEFSANQ---DHKTALQETLQQ-----NGDVAI-VYHL 183
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATG 434
++ GP + R + V V + L G
Sbjct: 184 LDEKGPAHERQFHVDVEVEGRVLGTGFG 211
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ FPD EG L RAA VQ + +K + ++ G +
Sbjct: 52 GDAVLELTVSDYLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGG----IDVADQV 184
+ + + FEA GAL+LD G I A+Q+
Sbjct: 112 GARKRLTLLEDLFEAFNGALYLDQGRKANIKFAEQI 147
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+ L +L G FNH +L R T S + +RLEFLGD VL L ++ L +
Sbjct: 6 RDLSHLAEVLGHTFNHPDILRRAVTHASA--EPRAWNAYERLEFLGDRVLALAVAEQLLD 63
Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEA 342
FP EG ++ SLV T + V + I + + + + D + +D +EA
Sbjct: 64 RFPHEREGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEA 123
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+ A+Y+D G+ A ++F + P L+ + ++ DPK+ LQ+ R +P
Sbjct: 124 VIAALYLDGGLAAAQKFILKHWNPLLE--MDHRPPQDPKTGLQEWAQGRRL------PLP 175
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+Y +E GP ++ +TV V + +A+G S + AE AA L+ P
Sbjct: 176 VYTTVEQTGPAHAPEFTVEVVVEGLAPQRASGKSKRLAEQLAAAAMLEAIP 226
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + L FP EG +A ++V+ + LA +A I L +++ + G D
Sbjct: 49 GDRVLALAVAEQLLDRFPHEREGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+++ EA++ AL+LDGG+ A +
Sbjct: 109 GARASDTILSDSMEAVIAALYLDGGLAAAQK 139
>gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|238689672|sp|B2V4D6.1|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 232
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
+E GV FN+ L+ T S G N+RLEFLGD+VLQL ++YL+N F +
Sbjct: 9 IENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEYLFNKFKDK 68
Query: 292 HEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAM 347
EG L+ +RS +V + + + + + + + ++R AD +EA + A+
Sbjct: 69 SEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADAVEAVIAAV 128
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKV 406
Y+DKG+ F + F + I N+ D K+KLQ+ L DG +I I Y++
Sbjct: 129 YLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQE----LLQKDG---EILIQYEL 181
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
+++ GP + R + V + + G S ++AE NAAK AL++
Sbjct: 182 LKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRLEK 229
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF+ F D EG L R+ IV L +AK++ L +++ + G +L
Sbjct: 49 GDSVLQLCITEYLFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
E A+ EA++ A++LD GI
Sbjct: 109 GGRERMSIQADAVEAVIAAVYLDKGI 134
>gi|145300361|ref|YP_001143202.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
gi|418362261|ref|ZP_12962900.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|142853133|gb|ABO91454.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
gi|356686523|gb|EHI51121.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 223
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 23/201 (11%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
++ L+ G +F+ LL R T RS G + N+RLEFLGD++L L+ +D L++
Sbjct: 4 KMNRLQSRLGHVFHDKELLTRALTHRSAGSRH-----NERLEFLGDSILSLVIADALFHR 58
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKD------RADL 339
FP+ EG LS +R++LV +T + + D+G I+ P +LK AD
Sbjct: 59 FPQAAEGDLSRMRATLVREKTLAELGREFDLGDDL---ILGPG-ELKSGGFRRESILADT 114
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA +GA+Y+D +EA + RL E DPK++LQ+ L G
Sbjct: 115 VEAVIGAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEI------LQGSRK 168
Query: 400 DIPIYKVIEHVGPTNSRSYTV 420
+P Y V G +++ +TV
Sbjct: 169 SLPTYTVTNVKGEAHNQEFTV 189
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + LFH FP EG L+ RA +V+ + LA L + L D ++ G
Sbjct: 43 GDSILSLVIADALFHRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDDLILGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+ +A+ EA++GA++LD ++ D++ + KD + R ++
Sbjct: 103 GGFRRESILADTVEAVIGAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEI 162
Query: 201 MYYPQHPL 208
+ + L
Sbjct: 163 LQGSRKSL 170
>gi|330828482|ref|YP_004391434.1| ribonuclease III [Aeromonas veronii B565]
gi|406678312|ref|ZP_11085489.1| ribonuclease 3 [Aeromonas veronii AMC35]
gi|423200977|ref|ZP_17187557.1| ribonuclease 3 [Aeromonas veronii AER39]
gi|423203831|ref|ZP_17190387.1| ribonuclease 3 [Aeromonas veronii AMC34]
gi|423210833|ref|ZP_17197386.1| ribonuclease 3 [Aeromonas veronii AER397]
gi|328803618|gb|AEB48817.1| Ribonuclease III [Aeromonas veronii B565]
gi|404614551|gb|EKB11531.1| ribonuclease 3 [Aeromonas veronii AER397]
gi|404617960|gb|EKB14881.1| ribonuclease 3 [Aeromonas veronii AER39]
gi|404622741|gb|EKB19601.1| ribonuclease 3 [Aeromonas veronii AMC35]
gi|404628523|gb|EKB25303.1| ribonuclease 3 [Aeromonas veronii AMC34]
Length = 223
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 25/202 (12%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
++ L+ G +F + LL R T RS G + N+RLEFLGD++L L+ +D L++
Sbjct: 4 KMNRLQSRLGHVFADLELLTRALTHRSAGSRH-----NERLEFLGDSILSLVIADDLFHR 58
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN---IINPKVDLKMKD------RAD 338
FP+ EG LS +R++LV +T ++G F I+ P +LK AD
Sbjct: 59 FPQAAEGDLSRMRATLVREKT----LAELGREFDLGDHLILGPG-ELKSGGFRRESILAD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+EA +GA+Y+D +E + RL+ E DPK++LQ+ L G
Sbjct: 114 TVEAVIGAVYLDTNLETVRTLLLSWYASRLEEIKPGIEQKDPKTRLQEI------LQGSR 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTV 420
+P Y V G +++ +TV
Sbjct: 168 KSLPTYTVTNVKGEAHNQEFTV 189
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + LFH FP EG L+ RA +V+ + LA L + L D ++ G
Sbjct: 43 GDSILSLVIADDLFHRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 187
+ +A+ EA++GA++LD ++ + S
Sbjct: 103 GGFRRESILADTVEAVIGAVYLDTNLETVRTLLLS 137
>gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
Length = 233
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 10/189 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD VL++ S L+ FP+ EG L+ LRSSLVN T +V+ + + +
Sbjct: 40 NERLEFLGDAVLEIAVSAQLFARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRL 99
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ + + R +D +EA G +++D G+E + + D
Sbjct: 100 ARGEENQGGRQRDSLLSDAMEAVFGGVFVDGGIEKARAVVERLYTDLWPKNATKVRRKDF 159
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K+KLQ+ T R G +P+Y + + GP +++ ++V V + R +A+G +++A
Sbjct: 160 KTKLQEA--TQRISKG----LPVYALEDSYGPEHAKIFSVRVDLPDGRQFRASGPGLKRA 213
Query: 441 EMNAAKVAL 449
E AA VAL
Sbjct: 214 EQEAAHVAL 222
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF FPD EG L R+++V LA +A+++ L+D + A G +
Sbjct: 47 GDAVLEIAVSAQLFARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQ 106
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD------NEVRFKQWMYYPQH 206
+ +++ EA+ G +F+DGGI+ A V LY D +VR K + Q
Sbjct: 107 GGRQRDSLLSDAMEAVFGGVFVDGGIEKARAVVER-LYTDLWPKNATKVRRKDFKTKLQE 165
Query: 207 PLQ 209
Q
Sbjct: 166 ATQ 168
>gi|390949031|ref|YP_006412790.1| ribonuclease III [Thiocystis violascens DSM 198]
gi|390425600|gb|AFL72665.1| ribonuclease III [Thiocystis violascens DSM 198]
Length = 224
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 16/227 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
+ L + G F LL + T RS G N N+RLEFLGD ++ + ++ L+ FP
Sbjct: 6 RRLALALGHAFKREDLLEQGLTHRSAGAFN-----NERLEFLGDALIGFMIAEALWERFP 60
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLG 345
E EG LS +R+SLV + + + + + + + ++ R AD LEA LG
Sbjct: 61 EADEGTLSRMRASLVKRESLAGLARGLRLGDYLRLGAGELRTGGHARDSILADALEAVLG 120
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y+D G + F RL Q DPK++LQ+ L + +P Y
Sbjct: 121 AVYLDAGFAVTQTVVMGLFAERLDDTSAAQSGKDPKTRLQEW------LQSRKWPLPDYV 174
Query: 406 VIEHVGPTNSRSYTVAVYFKNERL-AKATGNSIQQAEMNAAKVALQK 451
V E G + + +TV+ + L A TG+S ++AE +AA+ L++
Sbjct: 175 VTEIGGDQHDQIFTVSCLLTDRNLCAFGTGSSRRRAEQSAAQAMLEQ 221
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + L+ FP+ +EG L+ RA++V+ + LA LA+ + L D++ G
Sbjct: 43 GDALIGFMIAEALWERFPEADEGTLSRMRASLVKRESLAGLARGLRLGDYLRLGAGELRT 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+A+ EA++GA++LD G V D ++ KD + R ++W
Sbjct: 103 GGHARDSILADALEAVLGAVYLDAGFAVTQTVVMGLFAERLDDTSAAQSGKDPKTRLQEW 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQSRKWPL 170
>gi|392420223|ref|YP_006456827.1| ribonuclease III [Pseudomonas stutzeri CCUG 29243]
gi|390982411|gb|AFM32404.1| ribonuclease III [Pseudomonas stutzeri CCUG 29243]
Length = 229
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 18/219 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F L+ T RS N N+RLEFLGD +L + + L+NHF
Sbjct: 5 LARLERRLGYQFKDQELMLLALTHRSYAGRN-----NERLEFLGDAILNFVAGEALFNHF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS LR+ LV T +V+ + + + + ++ R AD LEA +
Sbjct: 60 PQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGYRRESILADTLEALI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D GM+ + LQ L DPK++LQ+ L ++P Y
Sbjct: 120 GAIYLDAGMDVARERVVAWLANELQGLTLVDTNKDPKTRLQEF------LQSRACELPRY 173
Query: 405 KVIEHVGPTNSRSYTVA--VYFKNERLAKATGNSIQQAE 441
+V++ G + R++ V V NE+ A G S + AE
Sbjct: 174 EVVDIQGEPHCRTFFVECQVALLNEK-AHGQGASRRIAE 211
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ LF+ FP EG L+ RA +V+ + LA LA+ L +++ G
Sbjct: 43 GDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ +A+ EAL+GA++LD G+DVA +
Sbjct: 103 GGYRRESILADTLEALIGAIYLDAGMDVARE 133
>gi|450050469|ref|ZP_21840282.1| ribonuclease III [Streptococcus mutans NFSM1]
gi|449202561|gb|EMC03468.1| ribonuclease III [Streptococcus mutans NFSM1]
Length = 231
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS +RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKMRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNYEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427]
gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427]
Length = 240
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 218 QWVEQSPLLKQLQY-LEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDT 274
Q +S +L ++Q L Y+ F + LL T S + N + N+RLEFLGD
Sbjct: 6 QKANKSIVLDEMQRKLSYT----FTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDA 61
Query: 275 VLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMK 334
+L LI S+YL+ PE EG LS +R+S+V + + + IG+ + + + +
Sbjct: 62 ILDLIISEYLFKKHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGR 121
Query: 335 DRADLL----EAFLGAMYIDKGMEACEQFCKVCFFPRL-QYFILNQEWNDPKSKLQQCCL 389
+RA +L EA GA+++D G + F ++ Q L + D K+ LQ+C
Sbjct: 122 ERASILADGFEALTGALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLLQECIQ 181
Query: 390 TLRTLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ + PI Y+V+ GP + + + V VY L + G S ++AE +AAK A
Sbjct: 182 KV-------SNAPIHYEVVGEEGPDHDKYFYVEVYHDTISLGRGIGKSKKEAEQDAAKKA 234
Query: 449 L 449
L
Sbjct: 235 L 235
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I S +LF P++ EG L+ RA+IV LA +A+ IGL +++L G ++
Sbjct: 59 GDAILDLIISEYLFKKHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMT 118
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +A+ FEAL GALFLDGG + A + L
Sbjct: 119 GGRERASILADGFEALTGALFLDGGFNEAKCFLTDTL 155
>gi|358051770|ref|ZP_09145878.1| ribonuclease III [Staphylococcus simiae CCM 7213]
gi|357258741|gb|EHJ08690.1| ribonuclease III [Staphylococcus simiae CCM 7213]
Length = 243
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 17/228 (7%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G +N+I L + F+ S + L N+RLEFLGD VL+L S YL++ P+ EG
Sbjct: 25 GFSYNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPEG 84
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMY 348
+L+ +R+++V + + N IG+ I+ K + K R +D EAF+GA+Y
Sbjct: 85 NLTKMRATIVCEPSLVIFANKIGLNEI--ILLGKGEEKTGGRTRPSLISDAFEAFIGALY 142
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D+G++ QF + FP +++ L D K++ Q+ D YK+I
Sbjct: 143 LDQGLDIVWQFAEKVIFPHVEHDEL-LGVVDFKTQFQELVHQQNKGD------VTYKLIN 195
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP + R +T V + +A G + +++E AA+ A ++ ++
Sbjct: 196 EEGPAHHRLFTSEVILEGHAVASGKGKTKKESEQKAAEQAYKQLKNLL 243
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF PD+ EG L RA IV L A +IGL + +L G +
Sbjct: 62 GDAVLELTVSRYLFDKHPDLPEGNLTKMRATIVCEPSLVIFANKIGLNEIILLGKGEEKT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+++ FEA +GAL+LD G+D+ Q V++
Sbjct: 122 GGRTRPSLISDAFEAFIGALYLDQGLDIVWQFAEKVIF 159
>gi|419585204|ref|ZP_14121265.1| ribonuclease III [Campylobacter coli 202/04]
gi|380562621|gb|EIA85477.1| ribonuclease III [Campylobacter coli 202/04]
Length = 224
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 121/237 (51%), Gaps = 20/237 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE F LL T +S +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIELLEQKLAYKFKDKDLLIHALTHKSFKKPY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
+ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G + FP++ L +++ K+KLQ+ +T L
Sbjct: 117 AIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDY---KTKLQE--ITQAKLG--- 168
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A++ + LA+A S ++A+ AAK+ L+K ++
Sbjct: 169 -QTPQYETVRAFGPDHLKQFEIALFLNGQELARAIAGSKKEAQQMAAKITLEKLGAL 224
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 43 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E +++ EA+MGA+ L+ G D A + ++ K+
Sbjct: 103 GGKEKPSILSDALEAIMGAIHLEAGFDFARNIALKLIEKN 142
>gi|449920226|ref|ZP_21798388.1| ribonuclease III [Streptococcus mutans 1SM1]
gi|449158830|gb|EMB62236.1| ribonuclease III [Streptococcus mutans 1SM1]
Length = 231
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 29/228 (12%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQL S YL++ +P+ E
Sbjct: 14 IVFSDKELLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLTISRYLFDKYPQKAE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAM 347
G LS RS +V R +S+ F I K + K R DL EAFLGA+
Sbjct: 72 GDLSKTRSMIV--REESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLFEAFLGAL 129
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEW---NDPKSKLQQCCLTLRTLDGGEPDIPI- 403
+D G++A E F P+++ N + D K+ LQ+ L +DG D+ I
Sbjct: 130 LLDAGLKAVEAFLNQVVIPKVE----NNNYERVTDYKTALQE----LLQVDG---DVLID 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+V++ GP +++ + VAV +E+L+ TG S + AE AAK AL+K
Sbjct: 179 YEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226
>gi|406597437|ref|YP_006748567.1| ribonuclease III [Alteromonas macleodii ATCC 27126]
gi|407684451|ref|YP_006799625.1| ribonuclease III [Alteromonas macleodii str. 'English Channel 673']
gi|407688379|ref|YP_006803552.1| ribonuclease III [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|406374758|gb|AFS38013.1| ribonuclease III [Alteromonas macleodii ATCC 27126]
gi|407246062|gb|AFT75248.1| ribonuclease III [Alteromonas macleodii str. 'English Channel 673']
gi|407291759|gb|AFT96071.1| ribonuclease III [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 228
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 16/220 (7%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G F + LL + T RS + N+RLEFLGD +L +I + L+ FP EG L
Sbjct: 15 GYTFTNEALLEQALTHRSAAKQH-----NERLEFLGDAILGMIVGETLFKRFPTVPEGKL 69
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +RS+LV T + + + + N+ ++ R AD +EA LGA+Y+D G
Sbjct: 70 TRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILGAIYLDSG 129
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ + R+ N D K++LQ+ L G + +P Y+V+ G
Sbjct: 130 MDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEF------LQGRKQALPTYEVLSISGK 183
Query: 413 TNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
+++++ V+ ++ A+GNS ++AE AA++ L+K
Sbjct: 184 DHAQTFEVSCQVESLPEAVVASGNSRRKAEQEAARLTLEK 223
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I LF FP + EG L R+ +V+ LA LAK + + + G
Sbjct: 45 GDAILGMIVGETLFKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLY--------KDNEVRFKQW 200
+A+ EA++GA++LD G+D V D+++ + + KD++ R +++
Sbjct: 105 GGHRRSSILADAVEAILGAIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEF 164
Query: 201 M 201
+
Sbjct: 165 L 165
>gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
gi|410862303|ref|YP_006977537.1| ribonuclease III [Alteromonas macleodii AltDE1]
gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
gi|410819565|gb|AFV86182.1| ribonuclease III [Alteromonas macleodii AltDE1]
Length = 228
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 20/222 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHL 296
G FN+ LL + T RS + N+RLEFLGD +L +I + L+ FP EG L
Sbjct: 15 GYTFNNEALLEQALTHRSAAKQH-----NERLEFLGDAILGMIIGETLFKRFPTVPEGKL 69
Query: 297 SLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKG 352
+ +RS+LV T + + + + N+ ++ R AD +EA LGA+Y+D G
Sbjct: 70 TRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILGAIYLDSG 129
Query: 353 MEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGP 412
M+ + R+ N D K++LQ+ L G + +P Y+V+ G
Sbjct: 130 MDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEF------LQGRKQALPTYEVLSISGK 183
Query: 413 TNSRSYTVAVYFKNERLAKAT---GNSIQQAEMNAAKVALQK 451
+++++ V K E L A GNS ++AE AA++ L+K
Sbjct: 184 DHAQTFEVCC--KVESLPDAVVAPGNSRRKAEQEAARLTLEK 223
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I LF FP + EG L R+ +V+ LA LAK + + + G
Sbjct: 45 GDAILGMIIGETLFKRFPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVLY--------KDNEVRFKQW 200
+A+ EA++GA++LD G+D V D+++ S + KD++ R +++
Sbjct: 105 GGHRRSSILADAVEAILGAIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEF 164
Query: 201 M 201
+
Sbjct: 165 L 165
>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
Length = 243
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 16/232 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
QL+ L+ G F ++ L + T RS G N N+RLEFLGD++L L+
Sbjct: 22 QLERLQKKLGYQFTNLDYLLQALTHRSAGAKN-----NERLEFLGDSILNFAIGKALFEK 76
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
FP+ +EG LS +R++LV +T +++ G+ + + ++ R +D +EA
Sbjct: 77 FPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAI 136
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+ A+Y+D GM+ + + + L DPK++LQ+ L G + +P
Sbjct: 137 IAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEF------LQGRKLPLPT 190
Query: 404 YKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQKCPS 454
Y+V++ G +++++ V + E + G S ++AE NAA+ L K +
Sbjct: 191 YEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKLTT 242
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F LF FP EG L+ RA +V+ Q LA LA++ GL ++M G
Sbjct: 61 GDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKS 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA-DQV---FSSVLY--------KDNEVRFKQW 200
+ +++C EA++ A++LD G+D A +QV + +L KD + R +++
Sbjct: 121 GGYRRESILSDCVEAIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEF 180
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 181 LQGRKLPL 188
>gi|400975048|ref|ZP_10802279.1| ribonuclease III [Salinibacterium sp. PAMC 21357]
Length = 233
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 11/205 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LLA T RS Y N + +N+RLEFLGD++L + LY P EG L+ R+SLV
Sbjct: 24 LLALALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLYRDNPNLDEGDLAKRRASLV 83
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
++ + + IG+ + + + +++ AD +EA +GA Y+D+G +
Sbjct: 84 SSVALAEIARQIGLGAYIRLGKGEEQTGGREKPSILADTVEAIIGAAYLDQGGDEATALV 143
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
P L DPK+ LQ+ + G PD Y+ IE GP +S+ +
Sbjct: 144 LRLVAPLLADPERFGAAMDPKTSLQELAAKMGR---GAPD---YR-IEDSGPDHSKRFHA 196
Query: 421 AVYFKNERLAKATGNSIQQAEMNAA 445
+V E ++ G+S + AEM AA
Sbjct: 197 SVVLSGEVISTGIGSSKKHAEMAAA 221
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 56 LVTWASQAYCNYTIFVGVVL--FVISVIQIYRMYMYIHKG--NN----------FSQFIT 101
+ S A + +G+ + ++++ +R + Y + G NN Q +T
Sbjct: 1 MAVTGSSAPAELSAVLGISIDPELLALALTHRSFAYENGGIANNERLEFLGDSILGQAVT 60
Query: 102 SIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAM 161
+ L+ P+++EG LA RA++V + LA +A++IGL ++ G + E +
Sbjct: 61 -VKLYRDNPNLDEGDLAKRRASLVSSVALAEIARQIGLGAYIRLGKGEEQTGGREKPSIL 119
Query: 162 ANCFEALMGALFLDGGIDVADQV---FSSVLYKDNEVRFKQWMYYPQHPLQE 210
A+ EA++GA +LD G D A + + L D E RF M P+ LQE
Sbjct: 120 ADTVEAIIGAAYLDQGGDEATALVLRLVAPLLADPE-RFGAAM-DPKTSLQE 169
>gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641]
gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641]
Length = 241
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F+ LL FT S Y N L + N+RLEFLGD +LQL+ S+YL+ +P E
Sbjct: 22 LTFDDTELLETAFTHTS--YANEHRLLKISHNERLEFLGDAILQLVISEYLFALYPSKPE 79
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS +RS +V + + D G F + + ++R DL EAFLGA+ +
Sbjct: 80 GDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILGDLFEAFLGALLL 139
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+E F + P+++ Q D K++LQ+ D+ I Y+V
Sbjct: 140 DKGVETVRDFIQQVMIPKVEAGQFEQVI-DYKTRLQEILQI-------HGDVLITYEVTS 191
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNS 436
GP +++ + V V + + + G S
Sbjct: 192 ESGPAHAKEFEVQVSVNGKIIGQGRGRS 219
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF ++P EG L+ R+ IV+ + LA ++ G + F+ G +
Sbjct: 58 GDAILQLVISEYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKS 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + FEA +GAL LD G++ V+ E +F+Q + Y LQE
Sbjct: 118 GGRNRDTILGDLFEAFLGALLLDKGVETVRDFIQQVMIPKVEAGQFEQVIDYKTR-LQE 175
>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
Length = 329
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 11/190 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
N+RLEFLGD VL L +D+++ +P+ EG LS LR++ V T +V +G+ +
Sbjct: 112 NERLEFLGDAVLNLCVTDHIFRTYPQRPEGELSKLRAATVRAETLAVTAQRLGLGELLRL 171
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEW-ND 379
+ + R AD EA + A+Y+ +G+E F ++ + +D
Sbjct: 172 GRGEEATGGRQRPSVLADAFEAVVAAVYLQEGLEGARAFILRTLGDEIRRLAESSGACDD 231
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
PK+ LQ+ R L GEP Y+VI+ GP + YTV V L +A G S +
Sbjct: 232 PKTALQELS---RRLGLGEPS---YRVIDASGPEHDPRYTVEVRVGGRPLGQAVGRSKKV 285
Query: 440 AEMNAAKVAL 449
AE AA++AL
Sbjct: 286 AEREAARIAL 295
>gi|417919187|ref|ZP_12562726.1| ribonuclease III [Streptococcus australis ATCC 700641]
gi|342834427|gb|EGU68697.1| ribonuclease III [Streptococcus australis ATCC 700641]
Length = 233
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F+ LL FT S Y N L + N+RLEFLGD +LQL+ S+YL+ +P E
Sbjct: 14 LTFDDTELLETAFTHTS--YANEHRLLKISHNERLEFLGDAILQLVISEYLFALYPSKPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS +RS +V + + D G F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+E F + P+++ Q D K++LQ+ D+ I Y+V
Sbjct: 132 DKGVETVRDFIQQVMIPKVEAGQFEQVI-DYKTRLQEILQI-------HGDVLITYEVTS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNS 436
GP +++ + V V + + + G S
Sbjct: 184 ESGPAHAKEFEVQVSVNGKIIGQGRGRS 211
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF ++P EG L+ R+ IV+ + LA ++ G + F+ G +
Sbjct: 50 GDAILQLVISEYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQE 210
+ + FEA +GAL LD G++ V+ E +F+Q + Y LQE
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVETVRDFIQQVMIPKVEAGQFEQVIDYKTR-LQE 167
>gi|227484649|ref|ZP_03914965.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
gi|227237369|gb|EEI87384.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
Length = 237
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 16/233 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN---LTLGSNQRLEFLGDTVLQLITSD 282
L++++ E S G FN L+ FT S +TN + SN+RLEFLGDT+L ++ S+
Sbjct: 8 LEKIEEFEKSIGYTFNDKTLIDVAFTHSS--FTNEARIKTKSNERLEFLGDTILDMVVSE 65
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN--IINPKVDLKMKD--RAD 338
YL+ ++ E EG L+ RS +V + + C + + + K K+K +AD
Sbjct: 66 YLFKNYKEKPEGWLTRTRSRIVCTDSFAKACEKFDLTKYLRFGMGEKKQGGKLKKHVKAD 125
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPR-LQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
EAF A+Y+D + +F K + LQ + + D K++LQ+ +
Sbjct: 126 TFEAFCAAIYLDSSYQRLFEFLKSNYSEEVLQIINDDSLFLDYKTRLQEY------YNAH 179
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y++I+ VGP + +++T+ V N LA+ G + + AE AAK A +
Sbjct: 180 SKKNLSYELIKEVGPEHDKTFTMEVRLGNRALAQGEGKNKKTAEQMAAKAAYE 232
>gi|222475478|ref|YP_002563895.1| ribonuclease III [Anaplasma marginale str. Florida]
gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi]
gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico]
gi|254807234|sp|B9KGT5.1|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
Length = 232
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 13/221 (5%)
Query: 235 SSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
++G F + LL T S+ Y + + +RLEFLGD VL + S+ LY FP+ EG
Sbjct: 16 ATGYQFRDLDLLLEALTHPSLSYK--SAANYERLEFLGDAVLSMTVSEMLYRLFPDDDEG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYID 350
L+ R++LV + IG+ + + D + LEA +GAMY+D
Sbjct: 74 CLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
G EA F + R Q+ DPK+ LQ+ + G +P+YK++
Sbjct: 134 GGPEAYRSFIHKHWLARAQHMSYTPP-QDPKTALQEW------VQGRGWAMPLYKLVSKS 186
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP + + V V + TG+S + AE AAK+ L+K
Sbjct: 187 GPEHKPVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ S L+ +FPD +EG L R A+V+ + +A+ IGL + +L + G C
Sbjct: 51 GDAVLSMTVSEMLYRLFPDDDEGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTC 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ + N EAL+GA+++DGG + + S ++K R + Y P Q+
Sbjct: 111 GGSDNPGTLENALEALIGAMYMDGG----PEAYRSFIHKHWLARAQHMSYTPP-----QD 161
Query: 213 PDGD-RQWVE 221
P ++WV+
Sbjct: 162 PKTALQEWVQ 171
>gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10]
gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10]
Length = 261
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 11/200 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFAN 323
N+RLEFLGD VL+L S YL+ F + EG ++ LR+++V + + + + + +
Sbjct: 66 DNERLEFLGDAVLELAISQYLFKLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVL 125
Query: 324 IINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ + + R AD+ EAF+GA+Y+D GMEA F + +P++ + D
Sbjct: 126 LGKGEEMTGGRKRPALLADVFEAFIGALYVDLGMEAVYDFLERYVYPKIHDGSFSH-MMD 184
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
KS+LQ+ ++ + G+ Y+++E GP ++R + V +++L G S ++
Sbjct: 185 FKSQLQEF---IQRENQGQVQ---YRIVEEKGPAHAREFVSEVMLDDDQLGTGVGKSKKE 238
Query: 440 AEMNAAKVALQKCPSICPQL 459
AE AA+ AL+K S L
Sbjct: 239 AEQMAAQEALKKLGSEMASL 258
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +F + EG + RAAIV LA LA + D++L G ++
Sbjct: 74 GDAVLELAISQYLFKLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVLLGKGEEMT 133
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ +A+ FEA +GAL++D G++
Sbjct: 134 GGRKRPALLADVFEAFIGALYVDLGMEA 161
>gi|333985409|ref|YP_004514619.1| ribonuclease 3 [Methylomonas methanica MC09]
gi|333809450|gb|AEG02120.1| Ribonuclease 3 [Methylomonas methanica MC09]
Length = 226
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 24/234 (10%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
++K+ + L G+ FN +L T RS G N N+RLE+LGD+VL + ++ L
Sbjct: 1 MIKKPEELARKLGLTFNQPQLFKTALTHRSAGANN-----NERLEYLGDSVLGFVVAERL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK----MKDR--AD 338
Y+ FP EG LS LR+SLVN + + + + + +I +LK +D +D
Sbjct: 56 YSQFPGVGEGVLSRLRASLVNQTSLAELARQHNLGDY--LILGSGELKSGGFRRDSILSD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN-DPKSKLQQCCLTLRTLDGG 397
LEA +GA+ +D G++ C + F + L+ WN DPK++LQ+ +
Sbjct: 114 ALEAIMGALLLDSGVDICRHWILNLFAEKFAEIKLDT-WNKDPKTRLQEL------MQAR 166
Query: 398 EPDIPIYKVIEHVGPTNSRSYTV--AVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+ ++P+Y++I G +++++ V +V E + G S ++AE AA+ L
Sbjct: 167 KKELPVYELISMSGADHAQTFEVKCSVPITTE-TTQGVGISRKKAEQAAAESML 219
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+ FP + EG L+ RA++V LA LA++ L D+++ G
Sbjct: 43 GDSVLGFVVAERLYSQFPGVGEGVLSRLRASLVNQTSLAELARQHNLGDYLILGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ-VFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+++ EA+MGAL LD G+D+ + + K E++ W P+ LQE
Sbjct: 103 GGFRRDSILSDALEAIMGALLLDSGVDICRHWILNLFAEKFAEIKLDTWNKDPKTRLQE 161
>gi|46445908|ref|YP_007273.1| ribonuclease III [Candidatus Protochlamydia amoebophila UWE25]
gi|81627660|sp|Q6MEK1.1|RNC_PARUW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46399549|emb|CAF22998.1| putative Ribonuclease III [Candidatus Protochlamydia amoebophila
UWE25]
Length = 242
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS-NQRLEFLGDTVLQLITSDY 283
+++Q +E G F +LL F RS N + N+RLEFLGD+VL ++ SDY
Sbjct: 14 VIRQAPAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLGMLISDY 73
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------- 336
LY P+ EG LS LRS LV S V + ++ K + +M D
Sbjct: 74 LYCKLPKTPEGQLSYLRSRLVE--ASSCVHYIQSLDLSGYLLLGKGE-RMNDGRGRESIL 130
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
ADL EA +GA+Y+D G++A + F F ++ IL + K+ LQ C
Sbjct: 131 ADLFEAIIGAIYLDGGLQAAKDFLFKNFHQHIE-IILATPLRNWKALLQDYC------QK 183
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
P+Y+V+ GP +S+ + ++V+ ++ L + G S ++
Sbjct: 184 NYQQTPLYQVLHESGPDHSKVFQISVWIQDRELGRGKGTSKKE 226
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +L+ P EG L+ R+ +V+ H + + L ++L G +
Sbjct: 62 GDSVLGMLISDYLYCKLPKTPEGQLSYLRSRLVEASSCVHYIQSLDLSGYLLLGKGERMN 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ FEA++GA++LDGG+ A
Sbjct: 122 DGRGRESILADLFEAIIGAIYLDGGLQAA 150
>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
Length = 243
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 11/193 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
NQRLEFLGD+VL LI SDYL+ + EG LS ++SSLV+ ++ + + ++ + F +
Sbjct: 44 NQRLEFLGDSVLSLIISDYLFKKYSSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLL 103
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ + + R DL EA +GA+Y+D G+ + +F + RL+ + D
Sbjct: 104 GHGEEASGGRYRDNMLEDLFEAIVGAIYLDSGITSASKFVMRAYKERLKNLDIENFDKDY 163
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K+ Q+ + PIYK E+ N + VY ++ A G S ++A
Sbjct: 164 KTIFQEL------IQKKHKTSPIYKSYEYY-DNNHEMFKSEVYVNDKNFALGVGKSKKEA 216
Query: 441 EMNAAKVALQKCP 453
E NAAK AL K
Sbjct: 217 ETNAAKKALDKIE 229
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I S +LF + +EG L+ ++++V + LA ++K + L DF+L HG +
Sbjct: 51 GDSVLSLIISDYLFKKYSSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEAS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ + + FEA++GA++LD GI A +
Sbjct: 111 GGRYRDNMLEDLFEAIVGAIYLDSGITSASK 141
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 21/220 (9%)
Query: 240 FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
F + LL + FT S Y N + N+RLEFLGD VL+L S YL+N++P EG
Sbjct: 31 FENEHLLVQAFTHSS--YVNEHRIKSSEDNERLEFLGDAVLELTVSHYLFNNYPSMSEGD 88
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYI 349
L+ LR+++V S+V + F ++ K + R AD+ E+F+GA+Y+
Sbjct: 89 LTKLRAAIVCE--PSLVNFAHQLSFGEYVLLGKGEELTGGRARPALLADVFESFIGALYL 146
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D+G++ +F + +P++ + + D KS+LQ+ G+ + Y +I+
Sbjct: 147 DQGLDKVIEFLQKVIYPKISEGVFSHVM-DYKSQLQEIVQR-----NGQGSLE-YLIIQE 199
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP ++R + V E L G S ++AE AAK AL
Sbjct: 200 KGPAHNREFVSRVALNGEILGTGVGKSKKEAEQKAAKEAL 239
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +P + EG L RAAIV L + A ++ +++L G +L
Sbjct: 65 GDAVLELTVSHYLFNNYPSMSEGDLTKLRAAIVCEPSLVNFAHQLSFGEYVLLGKGEELT 124
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FE+ +GAL+LD G+D + V+Y K +E F M Y LQE
Sbjct: 125 GGRARPALLADVFESFIGALYLDQGLDKVIEFLQKVIYPKISEGVFSHVMDYKSQ-LQE 182
>gi|377561842|ref|ZP_09791272.1| ribonuclease III [Gordonia otitidis NBRC 100426]
gi|377521037|dbj|GAB36437.1| ribonuclease III [Gordonia otitidis NBRC 100426]
Length = 256
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 104/226 (46%), Gaps = 20/226 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL T RS Y N L +N+RLEFLGD+VL ++ ++ LY +P+ EG L+ +R+S+V
Sbjct: 40 LLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLRYPDRPEGELAKIRASVV 99
Query: 305 NNRTQSVVCNDIGMP-----FFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACE 357
N + V +G + + KD AD LE+ GAMY+D G+E +
Sbjct: 100 NMHALADVARGLGEGGLGRHLYLGRGEEMTGGRDKDSILADGLESLFGAMYLDHGLETSQ 159
Query: 358 QFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
Q F R +W K+ LQ+ L G P P Y+ I GP +
Sbjct: 160 QIILNLFDEILDRAGQLGAGLDW---KTSLQE----LAAERGYGP--PQYQ-ISSTGPDH 209
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLD 460
S+ +T E L + G + ++AE AA +A Q P D
Sbjct: 210 SKEFTARAVIAGEELGEGVGRTKKEAEQKAASLAWQALAERGPSSD 255
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLY---AHGS 149
G++ + + L+ +PD EG LA RA++V LA +A+ +G + G
Sbjct: 67 GDSVLGVVITERLYLRYPDRPEGELAKIRASVVNMHALADVARGLGEGGLGRHLYLGRGE 126
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
++ + +A+ E+L GA++LD G++ + Q+
Sbjct: 127 EMTGGRDKDSILADGLESLFGAMYLDHGLETSQQII 162
>gi|398342486|ref|ZP_10527189.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 218
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLG---SNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
G+ F LL F S Y N + N+RLEFLGD+VL L+ + +LY P E
Sbjct: 2 GIRFKKTELLELAFVHSS--YQNESSEYEEDNERLEFLGDSVLGLVVARFLYGKHPNATE 59
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIIN--PKVDLKMKDRADLLEAFLGAMYIDK 351
G LS L+S LV+ ++V N + + + + + + K A+L E+ +GA+Y+D+
Sbjct: 60 GELSRLKSKLVSTAVLNIVSNHLKLSDYVLLGKGEGQGSSQKKLSANLFESLIGAIYLDQ 119
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEW----NDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
G+E E+ L F N E D K+ LQ+ C L +P Y++I
Sbjct: 120 GLEIAEK----IILNHLIAFAENPEKMESVKDFKTLLQETCQRKFKL------LPTYRLI 169
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ GP +++++ V+V ++ A+ TG + + AE +AA+ L+
Sbjct: 170 QESGPDHAKTFLVSVRIRDRYEAEGTGRNKKFAEQDAARKMLK 212
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ P+ EG L+ ++ +V L ++ + L D++L G
Sbjct: 38 GDSVLGLVVARFLYGKHPNATEGELSRLKSKLVSTAVLNIVSNHLKLSDYVLLGKGE--G 95
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
K AN FE+L+GA++LD G+++A+++
Sbjct: 96 QGSSQKKLSANLFESLIGAIYLDQGLEIAEKI 127
>gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204]
gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204]
Length = 226
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+L +++LE S + N+ +++ + F S + + N+RLEF+GD VLQL +S+ +
Sbjct: 2 ILNIIEWLE-SRHIKVNNAKMIQQAFIHSSYAHEHKNKNDNERLEFMGDAVLQLWSSNAI 60
Query: 285 YNHFPEH-HEGHLSLLRSSLVNNRTQSVVCNDIGMP--FFANIINPKVDLKMKDR--ADL 339
Y P + EGH++ LR+ LV + ++ + + K + KD AD+
Sbjct: 61 Y---PLNLSEGHMTRLRAQLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADM 117
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
EAFLGA+++D+GM+A + PRL + +D K+KLQ+ +
Sbjct: 118 FEAFLGALFLDQGMDAVDNILSEVITPRLAHPEDVGVIHDYKTKLQEYVQS------DSR 171
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+++ GP+N+ + + V L +G S +QAE NAA+ A +K
Sbjct: 172 QTVKYELVSETGPSNAPEFVMNVLVDGLVLGTGSGQSKKQAEQNAARNAFEK 223
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 108 VFP-DIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFE 166
++P ++ EG + RA +V + LA +++ L D++L G + +A+ FE
Sbjct: 60 IYPLNLSEGHMTRLRAQLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADMFE 119
Query: 167 ALMGALFLDGGIDVADQVFSSVL 189
A +GALFLD G+D D + S V+
Sbjct: 120 AFLGALFLDQGMDAVDNILSEVI 142
>gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1]
gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1]
Length = 229
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 120/238 (50%), Gaps = 29/238 (12%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMG--YTNLTLGSNQRLEFLGDTVLQLITSDYL 284
K L+ L+ ++FN +LL FT S + N + ++LEFLGD VL+L S+Y+
Sbjct: 5 KFLKKLKDEYNIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYV 64
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLL 340
Y H+P+ +EG L+ LRS++V S + G ++ N + + R D+
Sbjct: 65 YLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLLEDVF 124
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP---KSKLQQCCLTLRTLDGG 397
EAF GA+++D+GM A E F + +P I E++D K+ LQ+
Sbjct: 125 EAFNGALFLDQGMPAVEHFLHLTVYP----LIDKGEFDDSRDYKTDLQEVL--------- 171
Query: 398 EPDIPI---YKVI-EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ D P+ Y VI E P++ + V + + +K G++ + AE AAKVALQK
Sbjct: 172 QQDGPVNIEYTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQK 226
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +++ +P + EG L R+ IV+ + + A G +D + +G +
Sbjct: 52 GDAVLELAVSNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKA 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
K + + FEA GALFLD G+ + +Y
Sbjct: 112 GARHRKTLLEDVFEAFNGALFLDQGMPAVEHFLHLTVY 149
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL T RS Y N + +N+RLEFLGD+VL L+ ++ LY P+ EG L+ LR+++V
Sbjct: 34 LLDHALTHRSYAYENGGIPNNERLEFLGDSVLGLVVTESLYADHPDMAEGQLAKLRAAVV 93
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N R V + + + + + +D+ AD +EA +G +Y+ G+E +F
Sbjct: 94 NMRALGSVARRLELGDYLLLGRGEEATGGRDKTSILADTVEALIGTVYLAHGLEQARRFV 153
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
P L D K+ LQ+ + G P Y+V E GP + + +T
Sbjct: 154 HHLVDPLLASSARLGAGLDWKTSLQELAAS------GSFGSPEYRVSEE-GPDHEKVFTA 206
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
V E L G S ++AE AA+ A
Sbjct: 207 HVVISEEVLGDGNGRSKKEAEQKAAEQA 234
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V + L +A+R+ L D++L G +
Sbjct: 61 GDSVLGLVVTESLYADHPDMAEGQLAKLRAAVVNMRALGSVARRLELGDYLLLGRGEEAT 120
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ EAL+G ++L G++ A
Sbjct: 121 GGRDKTSILADTVEALIGTVYLAHGLEQA 149
>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
Length = 228
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 23/233 (9%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLITSDYL 284
++ E + G F++ +LL + T S +TN T +N+RLEFLGD+V+ LI +++L
Sbjct: 1 MKNFEKTIGYTFHNQKLLEQALTHSS--FTNETGRHHHKNNERLEFLGDSVVSLIIANHL 58
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------AD 338
+ +FP+ EG L+ LR+SLV +R+ + I + +I K + R D
Sbjct: 59 FVNFPDMPEGELTKLRASLVCDRSLAEFAGRIDLG--NQLIMGKGEEHSGGRQRRSNLED 116
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
EA +GA+Y+D G+EA F + F P+ D K+ LQ+
Sbjct: 117 AFEALVGAIYLDGGLEAARSFV-LGFIPKTLDLNSISRVTDYKTALQEIIQK-------N 168
Query: 399 PDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P+ + Y ++ GP + + + V+ + + +G S +QAE NAAK AL+
Sbjct: 169 PEEKLSYVLVSESGPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALE 221
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + HLF FPD+ EG L RA++V ++ LA A RI L + ++ G +
Sbjct: 46 GDSVVSLIIANHLFVNFPDMPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHS 105
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + + + FEAL+GA++LDGG++ A
Sbjct: 106 GGRQRRSNLEDAFEALVGAIYLDGGLEAA 134
>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
Length = 237
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 19/233 (8%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSD 282
L K+L+Y F +LL RS G N +N+RLE LGD VL L+ ++
Sbjct: 9 LEKKLKY-------TFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVTE 61
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----D 338
YLY HF EG L+ L+S +V+ + + +G+ + + +DR+ D
Sbjct: 62 YLYLHFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRSSILGD 121
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
+ EA LGA+Y+D ++F + + N++ D K+ LQ+ +
Sbjct: 122 VFEAILGAVYLDSDFMLAKEFAIKHLKRFIDHIDENEDLIDFKTILQEFSQREYKV---- 177
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
IP Y+VI+ +GP + +S+ +AV +E + TG + + AE +AA+ A +K
Sbjct: 178 --IPSYEVIKEMGPDHRKSFEIAVKINDELMGLGTGRNKKSAEQSAARNACRK 228
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L+ F EG LA ++ IV LA +++++G+ + +L + G +L
Sbjct: 51 GDAVLDLVVTEYLYLHFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
+ + + FEA++GA++LD +A +
Sbjct: 111 GGRDRSSILGDVFEAILGAVYLDSDFMLAKE 141
>gi|300172910|ref|YP_003772075.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
gi|299887288|emb|CBL91256.1| Ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
Length = 233
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 30/236 (12%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+YL + FN LL T R+ + + + QRLEFLGD+V+Q+ ++YL+
Sbjct: 8 KYLLTEFNIQFNDDSLLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSVAEYLFKR 67
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---------KDRAD 338
+P HEG L+ +R ++V R+ F+ +++ +++ +DR
Sbjct: 68 YPNWHEGQLTEMRIAMVQTRS---------FAHFSRVVHLNEGIRLGKGEEMSGARDRDS 118
Query: 339 LL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
LL EAF+GA+Y+D+G+EA F F + ++ + D KS+LQ+ +
Sbjct: 119 LLEDIWEAFIGALYLDQGLEAVSVFLDQTLFAAIDTDFFDR-FIDFKSRLQE-----KLQ 172
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
G DI E N++ + ++ + LA+ TG SI+ AE AA+ AL+
Sbjct: 173 KNGAVDIYYRTESEQPLAGNTQLFEASISVDDHELARGTGKSIKDAEKAAARTALK 228
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF +P+ EG L R A+VQ + AH ++ + L + + G ++
Sbjct: 52 GDSVMQVSVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMS 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVLYKDNEVRFKQWMYYPQHPL 208
+ + + +EA +GAL+LD G++ DQ + + D RF + Q L
Sbjct: 112 GARDRDSLLEDIWEAFIGALYLDQGLEAVSVFLDQTLFAAIDTDFFDRFIDFKSRLQEKL 171
Query: 209 QE 210
Q+
Sbjct: 172 QK 173
>gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066]
gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066]
Length = 233
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE + G F ++ LL + T RS G + N+RLEFLGD++L ++ + LY F
Sbjct: 10 LHQLEITIGYAFQNLSLLEQALTHRSFGPVH-----NERLEFLGDSILGMVIAKKLYAMF 64
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P + EG L+ +RSSLV T + + + G+ + ++ R AD +E+ +
Sbjct: 65 PHNPEGDLTRMRSSLVRETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVESVI 124
Query: 345 GAMYIDKGME--ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
AMY+D G E Q F RL+ DPKS LQ+ L +P
Sbjct: 125 AAMYLDSGEEFDTVRQIVLSWFHSRLKTINPKVNQKDPKSSLQEL------LQSQHKPLP 178
Query: 403 IYKVIEHVGPTNSRSYTVAVYFK--NERLAKATGNSIQQAEMNAAK 446
YKV+ G N + +TV V + +E+ + G+S ++AE AA+
Sbjct: 179 QYKVVNISGTDNDQVFTVEVCVEGVSEKFS-GKGSSKRRAEQVAAQ 223
>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
Length = 252
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 101/213 (47%), Gaps = 15/213 (7%)
Query: 231 YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
+LE + GV + LL R T RS Y N L +N+RLEFLGD+VL ++ + L+++ P+
Sbjct: 13 HLEAAFGVALDP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71
Query: 291 HHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANII---NPKVDLKMKDR----ADLLEAF 343
EG L+ LR+S+VN R + V +G + + +D+ AD LEA
Sbjct: 72 LPEGQLAKLRASVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASILADTLEAL 131
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
LGA+Y++ G+E F P + D K+ LQ+ +P
Sbjct: 132 LGAIYLESGLETVATVIHRLFDPLMAESAGRGAALDWKTSLQELTAAQGL------GVPE 185
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNS 436
Y+ IE GP + +++T V R A G S
Sbjct: 186 YR-IEGTGPDHLKTFTAWVVVAGRRYGGAEGRS 217
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGS 149
G++ + + LFH PD+ EG LA RA++V + LA +A+ + GL ++L G
Sbjct: 53 GDSVLGVVITTALFHNHPDLPEGQLAKLRASVVNMRALAEVARGLGPTGLGPYLLLGKGE 112
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ + +A+ EAL+GA++L+ G++ V
Sbjct: 113 ESTGGRDKASILADTLEALLGAIYLESGLETVATVI 148
>gi|402303315|ref|ZP_10822411.1| ribonuclease III [Selenomonas sp. FOBRC9]
gi|400378945|gb|EJP31795.1| ribonuclease III [Selenomonas sp. FOBRC9]
Length = 238
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 15/231 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYL 284
+L+ L GV F++I LL T S Y N + S N+RLEFLGD VL+L +S YL
Sbjct: 12 ELERLAAHMGVAFSNIALLDEALTHPS--YANESRDSIPHNERLEFLGDAVLELASSTYL 69
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y HFP+ EG L+ +R+SLV + T + + + + + + ++ DR ++
Sbjct: 70 YKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNNLENVF 129
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+Y+D+G E+ + P + Q D K+ LQ+ R +
Sbjct: 130 EAVIGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMS----- 184
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+++ GP + + +T V E L + TG S ++AE AA AL K
Sbjct: 185 -VAYELVGESGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAARALSK 234
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +S +L+ FP EG L RA++VQ+ LA LA+R+ L + HG
Sbjct: 57 GDAVLELASSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRG 116
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ ++ + N FEA++GA++LD G + A
Sbjct: 117 GGADRQNNLENVFEAVIGAVYLDRGWESA 145
>gi|386391878|ref|ZP_10076659.1| ribonuclease III [Desulfovibrio sp. U5L]
gi|385732756|gb|EIG52954.1| ribonuclease III [Desulfovibrio sp. U5L]
Length = 239
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 11/231 (4%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDY 283
+L L ++ + G F LL T S LG N+RLEFLGD VL+L S+
Sbjct: 1 MLPSLAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEE 60
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADL 339
L+ FPE EG L+LLRS LVN + + + + + + + + + R +D
Sbjct: 61 LFARFPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQGGRSRPALLSDA 120
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
EA +GA+++D G A + F + F + D KS+LQ+
Sbjct: 121 FEAVIGAIFLDGGYAAAKDFVRRAFAGSWPMRPAAPKTKDFKSRLQEYTQKAHK------ 174
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P+Y ++ GP + + + V + + ++ A S+++AE AA AL+
Sbjct: 175 SRPVYSLLGSEGPEHDKRFQVRLTLPDGQVITAVEKSVKKAEQTAALRALE 225
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF FP+ EG L R+ +V LA +A+R+ LE+ +L G +
Sbjct: 49 GDAVLELCVSEELFARFPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQ 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+++ FEA++GA+FLDGG A
Sbjct: 109 GGRSRPALLSDAFEAVIGAIFLDGGYAAA 137
>gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1]
gi|189043327|sp|A6VUP6.1|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1]
Length = 227
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 16/219 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
Q L G F + LL T RS G N N+RLEFLGD++L + ++ L++ FP
Sbjct: 6 QKLSRRIGYFFADLGLLELALTHRSFGGKN-----NERLEFLGDSILNYVIAEDLFHRFP 60
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLG 345
+ EG LS LR+SLV T + + + + + + ++ R AD +E +G
Sbjct: 61 KAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKSGGFRRDSILADTVEGIIG 120
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
AMY+D GM+ C Q + RL L D K++LQ+ L + +P Y
Sbjct: 121 AMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEF------LQARKHALPQYD 174
Query: 406 VIEHVGPTNSRSYTVAVYFK-NERLAKATGNSIQQAEMN 443
V+ VG + +++ V + + E + GNS + AE N
Sbjct: 175 VVNIVGEPHDQTFYVHCHIELCEEFIEGKGNSRRIAEQN 213
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ ++ + LFH FP +EG L+ RA++V+ LA LA+ L D++ G
Sbjct: 43 GDSILNYVIAEDLFHRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
+A+ E ++GA++LD G+DV D ++ KD + R +++
Sbjct: 103 GGFRRDSILADTVEGIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEF 162
Query: 201 MYYPQHPL 208
+ +H L
Sbjct: 163 LQARKHAL 170
>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
gi|20139354|sp|Q9KA05.1|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
Length = 263
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 17/220 (7%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
+ F + +LL + FT S Y N + N+RLEFLGD VL+L S YLY F + E
Sbjct: 44 LTFANKKLLVQAFTHSS--YVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYKAFEQMSE 101
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G ++ LR+S+V + + + ++ + + + R AD+ E+F+GA+Y+
Sbjct: 102 GDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMTGGRKRPALLADVFESFVGALYL 161
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D+GM+A F + +P++ + D KS+LQ+ ++ + G Y++++
Sbjct: 162 DQGMDAVYLFLERTIYPKISEGAFSH-MMDFKSQLQEF---IQRDNLGHIH---YEIVQE 214
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP ++R + V NE L TG S ++AE +AA+ AL
Sbjct: 215 RGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQAL 254
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ F + EG + RA+IV LA LA+ + + +L G ++
Sbjct: 80 GDAVLELAVSQYLYKAFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMT 139
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYY 203
+ +A+ FE+ +GAL+LD G+D +Y K +E F M +
Sbjct: 140 GGRKRPALLADVFESFVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDF 191
>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
Length = 233
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 19/230 (8%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNL---TLGSNQRLEFLGDTVLQLITSDYLYNHF 288
LE + G +F LL T S Y N N+RLEFLGD VL+L S+ L+ F
Sbjct: 7 LENALGHVFVRPELLTTALTHSS--YANERGEAAKHNERLEFLGDAVLELSVSEELFARF 64
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEA 342
PE EG L+LLRS LVN S+ + + +I+ K + R +D+ EA
Sbjct: 65 PEAPEGELTLLRSQLVNE--SSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEA 122
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+GA+++D G + F F + + D KS+LQ+ + P
Sbjct: 123 VIGALFLDGGYGVAKSFVNATFAEVWPVRSVAPKTRDYKSRLQEYTQKVHKAR------P 176
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
+Y +++ GP + + +TV + + A S+++AE AA++AL+K
Sbjct: 177 VYTLLDSEGPEHDKRFTVRLELPDGHALTAMEKSVKKAEQMAARLALEKI 226
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF FP+ EG L R+ +V LA +A R+ LED +L G +
Sbjct: 48 GDAVLELSVSEELFARFPEAPEGELTLLRSQLVNESSLAAMALRLSLEDHILLGKGEENQ 107
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+++ FEA++GALFLDGG VA
Sbjct: 108 GGRTRPSLLSDVFEAVIGALFLDGGYGVA 136
>gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63]
gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08]
gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07]
gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08]
gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07]
Length = 236
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
LL +Q E F + + T S N N+RLEFLGD+VL ++ SD
Sbjct: 5 KKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISD 64
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
YL+N EG L+ LR+++V + S V NDI + + + + R AD
Sbjct: 65 YLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRTSILAD 124
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQE----WNDPKSKLQQCCLTLRTL 394
EA + A+Y+D G E+ QF ++ I + + D K+ LQ+ L
Sbjct: 125 AFEAVIAAIYLDGGFESARQFI----LHHMENIIYDSRKGNIFRDYKTHLQEV------L 174
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G + Y++IE GP +++ + + V + L G S ++AE AAK+AL+K
Sbjct: 175 QGNGENNIWYRLIEEKGPDHNKRFVMEVGINEDVLGIGEGKSKKEAEQLAAKIALKK 231
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +LF+ ++ EG L RA IV L+ +A I L ML G +
Sbjct: 54 GDSVLGIVISDYLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEAT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV----FSSVLYKDNEVR-FKQWMYYPQHP 207
+A+ FEA++ A++LDGG + A Q +++Y + F+ + + Q
Sbjct: 114 GGRHRTSILADAFEAVIAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEV 173
Query: 208 LQ-------------EQEPDGDRQWV 220
LQ E+ PD ++++V
Sbjct: 174 LQGNGENNIWYRLIEEKGPDHNKRFV 199
>gi|395648702|ref|ZP_10436552.1| ribonuclease III [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 229
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 18/219 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F L+ T RS N N+RLEFLGD +L + + L+ F
Sbjct: 5 LSRLERQLGYTFKDQELMVLALTHRSFAGRN-----NERLEFLGDAILNFVAGEALFERF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS LR+ LV T +V+ G+ + + + ++ R AD LEA +
Sbjct: 60 PQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D GMEA + ++ L DPK++LQ+ L ++P Y
Sbjct: 120 GAIYLDAGMEAAKARVTAWLTSEIESLTLVDTNKDPKTRLQEF------LQSRGCELPRY 173
Query: 405 KVIEHVGPTNSRSYTV--AVYFKNERLAKATGNSIQQAE 441
+V++ G + R + V + NE+ ++ G S + AE
Sbjct: 174 EVVDIQGEPHCRVFFVECEITLLNEK-SRGQGVSRRIAE 211
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ LF FP EG L+ RA +V+ + LA LA+ GL +++ G
Sbjct: 43 GDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+ +A+ EAL+GA++LD G++ A ++ L + E
Sbjct: 103 GGFRRESILADALEALIGAIYLDAGMEAAKARVTAWLTSEIE 144
>gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
Length = 229
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 18/219 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L LE G F L+ T RS N N+RLEFLGD +L + + L+ F
Sbjct: 5 LSRLERQLGYTFKDQELMVLALTHRSFAGRN-----NERLEFLGDAILNFVAGEALFERF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
P+ EG LS LR+ LV T +V+ G+ + + + ++ R AD LEA +
Sbjct: 60 PQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALI 119
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
GA+Y+D GMEA + ++ L DPK++LQ+ L ++P Y
Sbjct: 120 GAIYLDAGMEAAKARVTAWLTSEIESLTLVDTNKDPKTRLQEF------LQSRGCELPRY 173
Query: 405 KVIEHVGPTNSRSYTV--AVYFKNERLAKATGNSIQQAE 441
+V++ G + R + V + NE+ ++ G S + AE
Sbjct: 174 EVVDIQGEPHCRVFFVECEITLLNEK-SRGQGVSRRIAE 211
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ LF FP EG L+ RA +V+ + LA LA+ GL +++ G
Sbjct: 43 GDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+ +A+ EAL+GA++LD G++ A ++ L + E
Sbjct: 103 GGFRRESILADALEALIGAIYLDAGMEAAKARVTAWLTSEIE 144
>gi|333398242|ref|ZP_08480055.1| ribonuclease III [Leuconostoc gelidum KCTC 3527]
gi|406599565|ref|YP_006744911.1| ribonuclease III [Leuconostoc gelidum JB7]
gi|406371100|gb|AFS40025.1| ribonuclease III [Leuconostoc gelidum JB7]
Length = 233
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 34/238 (14%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+YL + FN LL T R+ + + + QRLEFLGD+V+Q+ ++YL+
Sbjct: 8 KYLLTEFNIQFNDDALLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSVAEYLFKR 67
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---------KDRAD 338
+P HEG L+ +R ++V R+ F+ +++ +++ +DR
Sbjct: 68 YPNWHEGQLTEMRIAMVQTRS---------FAHFSRVVHLNEGIRLGKGEEMSGARDRDS 118
Query: 339 LL----EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
LL EAF+GA+Y+D+G+EA F F + ++ + D KS+LQ+ +
Sbjct: 119 LLEDIWEAFIGALYLDQGLEAVSVFLDQTLFAAIDTDFFDR-FIDFKSRLQEKLQKNGAV 177
Query: 395 DGGEPDIPIYKVIEHVGP--TNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
D IY E+ P N++ + ++ + LA+ TG SI+ AE AA+ AL+
Sbjct: 178 D-------IYYRTENEQPLAGNTQLFEASISVDDHELARGTGKSIKDAEKAAARTALK 228
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + +LF +P+ EG L R A+VQ + AH ++ + L + + G ++
Sbjct: 52 GDSVMQVSVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMS 111
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVLYKDNEVRFKQWMYYPQHPL 208
+ + + +EA +GAL+LD G++ DQ + + D RF + Q L
Sbjct: 112 GARDRDSLLEDIWEAFIGALYLDQGLEAVSVFLDQTLFAAIDTDFFDRFIDFKSRLQEKL 171
Query: 209 QE 210
Q+
Sbjct: 172 QK 173
>gi|442321139|ref|YP_007361160.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
gi|441488781|gb|AGC45476.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
Length = 257
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 114/235 (48%), Gaps = 16/235 (6%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT----LGSNQRLEFLGDTVLQLIT 280
+ ++++ LE G++F+ + T ++ Y N + L NQRLEFLGD+V+ L
Sbjct: 1 MAERVETLEKRLGLVFSRREVALEALTHKT--YVNESRDKDLKDNQRLEFLGDSVVNLAV 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S L + FP EG L+ +R+ +VN + V I + + ++ +++
Sbjct: 59 SHRLMDRFPGVSEGDLTKMRARVVNEDGLARVARSIPLGDLLLLGRGELQSGGREKNSVL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
AD LEA A+Y+ G+E CF L+ Q D K+ LQ+ L
Sbjct: 119 ADALEAVFAAVYLCSGLETAAALVDRCFAELLEEVSSGQGRLDYKTLLQEMAHEKLKLS- 177
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y+V+ GP +S+ + V + + LA+A+G S ++AE +AA+ L++
Sbjct: 178 -----PRYRVVSEAGPEHSKVFEVELTLGDAPLARASGRSKKEAEQSAAQATLER 227
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ S L FP + EG L RA +V LA +A+ I L D +L G
Sbjct: 50 GDSVVNLAVSHRLMDRFPGVSEGDLTKMRARVVNEDGLARVARSIPLGDLLLLGRGELQS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVL 189
E +A+ EA+ A++L G++ A D+ F+ +L
Sbjct: 110 GGREKNSVLADALEAVFAAVYLCSGLETAAALVDRCFAELL 150
>gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
WAL-14163]
gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673]
gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
WAL-14163]
gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673]
Length = 228
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 29/232 (12%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 282
K+L LE +G FN+ LL R T S Y N L N+RLEFLGD VL++++SD
Sbjct: 3 KKLMELEEKTGYHFNNRELLGRAMTHSS--YANECHKSKLECNERLEFLGDAVLEIVSSD 60
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
+L++ FP+ EG L+ R+S+V T + ++ + + + + ++R +D
Sbjct: 61 FLFHKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSD 120
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN-----QEWNDPKSKLQQCCLTLRT 393
+EA +GA+Y+D G + ++F + FILN + + D K+ LQ+ + R
Sbjct: 121 AMEALIGAIYLDGGFASAKEF--------IHKFILNDMEHKKLFYDSKTILQEIVQS-RC 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+G Y+++ GP +++ + VA + + + TG + + AE AA
Sbjct: 172 EEG-----LSYQLLREEGPDHNKMFEVAAKIGEKEIGRGTGRTKKAAEQLAA 218
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + ++S LFH FPD+ EG L RA++V LA+ A+ + L ++L G +
Sbjct: 50 GDAVLEIVSSDFLFHKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEAT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+++ EAL+GA++LDGG A + + N++ K+ Y + LQE
Sbjct: 110 GGRNRNSVVSDAMEALIGAIYLDGGFASAKEFIHKFIL--NDMEHKKLFYDSKTILQE 165
>gi|427407296|ref|ZP_18897501.1| ribonuclease III [Selenomonas sp. F0473]
gi|425707386|gb|EKU70431.1| ribonuclease III [Selenomonas sp. F0473]
Length = 251
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 15/232 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLT---LGSNQRLEFLGDTVLQLITSDY 283
K L+ L G+ F I LL T S Y N + + N+RLE+LGD VL+L +S Y
Sbjct: 24 KALERLSVRLGIRFADISLLDEALTHSS--YANESRKLIPHNERLEYLGDAVLELASSTY 81
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL--- 340
LY FP EG L+ +R+SLV + T + + + + + + + + +R + L
Sbjct: 82 LYECFPACTEGELTKMRASLVQSETLARLARRLDLGAYLRLGHGEAQDGGAERQNNLENA 141
Query: 341 -EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
EA +GA+Y+D G EA + + + Q D K+ LQ+ + +
Sbjct: 142 FEAVVGAVYLDGGWEAAKDYAYAQLASEVGRLRPEQVQRDYKTTLQEY------IQKTQR 195
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ Y++++ GP + + +T V + + TG S ++AE AA AL +
Sbjct: 196 ETVAYELVDESGPDHDKRFTTRVLVAGRAMGEGTGRSKKKAEQQAAAHALDR 247
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +S +L+ FP EG L RA++VQ++ LA LA+R+ L ++ HG
Sbjct: 70 GDAVLELASSTYLYECFPACTEGELTKMRASLVQSETLARLARRLDLGAYLRLGHGEAQD 129
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA-DQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
E ++ + N FEA++GA++LDGG + A D ++ + + +R +Q + LQE
Sbjct: 130 GGAERQNNLENAFEAVVGAVYLDGGWEAAKDYAYAQLASEVGRLRPEQVQRDYKTTLQE 188
>gi|445063741|ref|ZP_21375899.1| ribonuclease III [Brachyspira hampsonii 30599]
gi|444504876|gb|ELV05480.1| ribonuclease III [Brachyspira hampsonii 30599]
Length = 245
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI 324
NQRLEFLGD+VL L+ SDYL+ + EG LS ++SSLV+ ++ + + ++ + F +
Sbjct: 44 NQRLEFLGDSVLSLVISDYLFKKYNSSKEGVLSKVKSSLVSQKSLADISKELKLGDFLLL 103
Query: 325 INPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDP 380
+ + + R DL EA +GA+Y+D G+ + +F + RL + D
Sbjct: 104 GHGEEASGGRYRDNMLEDLFEAIVGAIYLDSGITSAYKFVMRAYKERLGNLDIENFDKDY 163
Query: 381 KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQA 440
K+ Q+ + PIYK E+ N + V+ ++ A G S ++A
Sbjct: 164 KTIFQEL------IQKKHKTSPIYKSYEYYDDNNHEMFKAEVFVNDKNFALGIGKSKKEA 217
Query: 441 EMNAAKVALQKCP 453
E NAAK AL K
Sbjct: 218 ETNAAKKALDKIE 230
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S +LF + +EG L+ ++++V + LA ++K + L DF+L HG +
Sbjct: 51 GDSVLSLVISDYLFKKYNSSKEGVLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEAS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + + FEA++GA++LD GI A
Sbjct: 111 GGRYRDNMLEDLFEAIVGAIYLDSGITSA 139
>gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
Length = 232
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 21/220 (9%)
Query: 240 FNHIRLLARVFTTRSMGY-TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
FN LL T RS + + L NQRLEFLGD V++LI S YL++ +P+ EG L+
Sbjct: 16 FNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRYLFDRYPDAPEGDLTK 75
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGME 354
R++LV I + + + ++ + +R +D EA + A+Y+D+G E
Sbjct: 76 YRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDAYEALMAAIYLDQGYE 135
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKL--QQCCLTLRTL---DGGEPDIPIYKVIEH 409
+ F IL + W++P L Q TL+ L + G P P Y I
Sbjct: 136 TAQSF---------HINILEKLWDEPADLLLVQNPKGTLQELTQKNHGSP--PKYITISK 184
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
GP + Y V E ++K G +++ A+ NAA+ A+
Sbjct: 185 TGPEHDPLYKVECILNKELISKGQGKTLKAAQENAARKAI 224
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +LF +PD EG L YRAA+V+ L AK I L ++L
Sbjct: 49 GDAVIELIVSRYLFDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKS 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 191
E +++ +EALM A++LD G + A ++L K
Sbjct: 109 QGNERPSNLSDAYEALMAAIYLDQGYETAQSFHINILEK 147
>gi|383782235|ref|YP_005466802.1| putative ribonuclease III [Actinoplanes missouriensis 431]
gi|381375468|dbj|BAL92286.1| putative ribonuclease III [Actinoplanes missouriensis 431]
Length = 246
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 108/219 (49%), Gaps = 15/219 (6%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
+ LE + G+ F LL R T RS Y N L +N+RLEFLGD+VL ++ + L+++ P
Sbjct: 11 EPLEEAFGIPFKP-ELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITSALFHNHP 69
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKM---KDR----ADLLEA 342
+ EG L+ LR+S+VN + V +G + + +D+ AD LEA
Sbjct: 70 DLPEGQLAKLRASVVNMHALADVARGLGPLGLGPHLLLGKGEETTGGRDKASILADTLEA 129
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
LGA+Y++ G+E + F P + D K+ LQ+ L +P
Sbjct: 130 LLGAIYLEHGLEVAGEVIHRLFDPLMLESASRGAALDWKTSLQELTAALGL------GVP 183
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
Y+ IE GP +++++T V ER + G S +QAE
Sbjct: 184 DYE-IEDSGPDHAKTFTAWVVVAGERYGGSEGRSKKQAE 221
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAK---RIGLEDFMLYAHGS 149
G++ + + LFH PD+ EG LA RA++V LA +A+ +GL +L G
Sbjct: 52 GDSVLGVVITSALFHNHPDLPEGQLAKLRASVVNMHALADVARGLGPLGLGPHLLLGKGE 111
Query: 150 DLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
+ + +A+ EAL+GA++L+ G++VA +V
Sbjct: 112 ETTGGRDKASILADTLEALLGAIYLEHGLEVAGEVI 147
>gi|355627640|ref|ZP_09049374.1| ribonuclease III [Clostridium sp. 7_3_54FAA]
gi|354820195|gb|EHF04618.1| ribonuclease III [Clostridium sp. 7_3_54FAA]
Length = 228
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 29/232 (12%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSD 282
K+L LE +G FN+ LL R T S Y N L N+RLEFLGD VL++++SD
Sbjct: 3 KKLMELEEKTGYHFNNRELLGRAMTHSS--YANECHKSKLECNERLEFLGDAVLEIVSSD 60
Query: 283 YLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----AD 338
+L++ FP+ EG L+ R+S+V T + ++ + + + + ++R +D
Sbjct: 61 FLFHKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSD 120
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN-----QEWNDPKSKLQQCCLTLRT 393
+EA +GA+Y+D G + ++F + FILN + + D K+ LQ+ + R
Sbjct: 121 AMEALIGAIYLDGGFASAKEF--------IHKFILNDMEHKKLFYDSKTILQEIVQS-RC 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
+G Y+++ GP +++ + VA + + + TG + + AE AA
Sbjct: 172 EEG-----LSYQLLREEGPDHNKMFEVAAKIGKKEIGRGTGRTKKAAEQLAA 218
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + ++S LFH FPD+ EG L RA++V LA+ A+ + L ++L G +
Sbjct: 50 GDAVLEIVSSDFLFHKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEAT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+++ EAL+GA++LDGG A + + N++ K+ Y + LQE
Sbjct: 110 GGRNRNSVVSDAMEALIGAIYLDGGFASAKEFIHKFIL--NDMEHKKLFYDSKTILQE 165
>gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
Length = 272
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 99/224 (44%), Gaps = 12/224 (5%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
+E G F LL T S + S QRLEFLGD VL LI SD LY FP+
Sbjct: 47 IEQRIGHSFADPSLLTTALTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106
Query: 292 HEGHLSLLRSSLVNNRTQSVVCN--DIGMPFFANIINPKVDLKMKDR--ADLLEAFLGAM 347
EG LS + LV + + V D+ + K++ D+ EA +GA+
Sbjct: 107 DEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGAGAKLRKSVLGDICEAVIGAV 166
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D G EA F + + R+ + + DPK+ LQ+ G P P+Y+ +
Sbjct: 167 YLDGGYEAASNFVRSNWTERMHKPV--RSLRDPKTVLQEWAQAR-----GLP-TPVYREV 218
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
E GP + + VAV A+ G S + AE AA L +
Sbjct: 219 ERTGPHHDPQFRVAVVLPGLEPAEGVGGSKRAAEKVAASAMLAR 262
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGL-EDFMLYAHGSDL 151
G++ I S L+ FPD +EG L+ A +V+ + A +A+ + L E + G+
Sbjct: 87 GDHVLGLIVSDMLYRAFPDADEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGA 146
Query: 152 CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSS 187
++ K + + EA++GA++LDGG + A S
Sbjct: 147 GAKLR-KSVLGDICEAVIGAVYLDGGYEAASNFVRS 181
>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
Length = 222
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 10/192 (5%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCN--DIGMPFF 321
+N+RLEFLGD V+ L+ ++L+ F + EG+LS LR++LVN ++ + + D+G F
Sbjct: 33 NNERLEFLGDAVMDLVVGEFLFFKFQKESEGNLSKLRAALVNEKSFANLAQKLDLGECIF 92
Query: 322 ANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+I D + K +D EA +GAMY++ G E + + + D
Sbjct: 93 MSIAEENNDGRNKPSILSDAFEALMGAMYLEIGFEKTKNIALNLLNEVYPHIDTQSLFKD 152
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
K+KLQ+ +T + G P Y V+ GP + + + +A+ + + A+A S ++
Sbjct: 153 YKTKLQE--ITQANMAG----TPEYIVVNAFGPDHKKQFEIAIKIQGKEFARAIAGSKKE 206
Query: 440 AEMNAAKVALQK 451
A+ AK+AL+K
Sbjct: 207 AQQQCAKIALEK 218
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + LF F EG L+ RAA+V + A+LA+++ L + + + +
Sbjct: 41 GDAVMDLVVGEFLFFKFQKESEGNLSKLRAALVNEKSFANLAQKLDLGECIFMSIAEENN 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV 195
+++ FEALMGA++L+ G + + ++L NEV
Sbjct: 101 DGRNKPSILSDAFEALMGAMYLEIGFEKTKNIALNLL---NEV 140
>gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB]
gi|90101622|sp|Q47EF7.1|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB]
Length = 222
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F+ L T RS G N N+RLEFLGD VL + + LY+ FP+ EG LS L
Sbjct: 14 FSDQALFRTALTHRSFGTPN-----NERLEFLGDGVLDFVIAASLYHRFPDLPEGDLSRL 68
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEA 355
R++LV T + ++ + F + ++ R AD LEA GA+Y+D G EA
Sbjct: 69 RANLVRQETLHRLALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIYLDAGFEA 128
Query: 356 CEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNS 415
+ F P L Q D K++LQ+ L G + +P Y ++E G +
Sbjct: 129 SRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEW------LQGRKKALPRYHLLEATGAAHE 182
Query: 416 RSYTVAVYFKNERLAKAT-GNSIQQAEMNAAKVALQK 451
+ + +A ++ L G+S + AE AA+ AL++
Sbjct: 183 QRFEIACEIESPALRTVGHGSSRRIAEQVAAEKALKE 219
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F+ + L+H FPD+ EG L+ RA +V+ + L LA + + F+ G
Sbjct: 41 GDGVLDFVIAASLYHRFPDLPEGDLSRLRANLVRQETLHRLALELNIGAFLRLGEGELKS 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGID----VADQVFSSVL--------YKDNEVRFKQW 200
+ +A+ EAL GA++LD G + V +++F+ +L KD + R ++W
Sbjct: 101 GGAQRPSILADALEALFGAIYLDAGFEASRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEW 160
Query: 201 M 201
+
Sbjct: 161 L 161
>gi|253682200|ref|ZP_04862997.1| ribonuclease III [Clostridium botulinum D str. 1873]
gi|253561912|gb|EES91364.1| ribonuclease III [Clostridium botulinum D str. 1873]
Length = 236
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 17/240 (7%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L +E V FN I LL T S N + SN+RLEFLGD++LQL S++LYN +
Sbjct: 9 LNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISEFLYNKY 68
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
+ EG L+ R+ +V + V + + + N+ + + R +D +EA +
Sbjct: 69 EQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAII 128
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIY 404
++Y+D+G ++F F +Q +Q D K+KLQ+ G+ +I Y
Sbjct: 129 ASIYLDQGYATAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKF-----GDYNIE-Y 182
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKR 464
K++ GP + R + V +E G S ++AE NAAK AL+ LD++KR
Sbjct: 183 KLVSFDGPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK-------GLDNEKR 235
>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
gi|156865727|gb|EDO59158.1| ribonuclease III [Clostridium sp. L2-50]
Length = 230
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G F + LL T +S Y N + S +R EFLGD +L+ + S+YLY ++PE+
Sbjct: 14 GYTFRDLDLLVTALTHKS--YANERKINKVESYERSEFLGDAILEFVVSEYLYQNYPEYP 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK-MKDR----ADLLEAFLGAM 347
EG L+ LR+SLV T S + ++ + +++ DL ++R DL EA LGA+
Sbjct: 72 EGKLTKLRASLVCEFTLSQISKELKFGHYV-LLSKGEDLTGGRNRNSIMCDLFEAVLGAI 130
Query: 348 YIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI 407
Y+D G++ ++F ++ L + D KS LQ+ L E Y ++
Sbjct: 131 YLDGGLDEAKKFVHRFLLDDVETHSL---FYDAKSTLQE-------LAQKEEKTLTYALL 180
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
E GP +++SY V E +A G S + +E AA AL
Sbjct: 181 EEKGPDHNKSYVSEVCINGEHVATGEGASRKASEQTAAYNAL 222
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 14/144 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+ S +L+ +P+ EG L RA++V L+ ++K + ++L + G DL
Sbjct: 51 GDAILEFVVSEYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLT 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA---------DQVFSSVLYKDNEVRFKQWMYY 203
M + FEA++GA++LDGG+D A D V + L+ D + ++
Sbjct: 111 GGRNRNSIMCDLFEAVLGAIYLDGGLDEAKKFVHRFLLDDVETHSLFYDAKSTLQELAQK 170
Query: 204 PQHP-----LQEQEPDGDRQWVEQ 222
+ L+E+ PD ++ +V +
Sbjct: 171 EEKTLTYALLEEKGPDHNKSYVSE 194
>gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36]
gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36]
Length = 223
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ L+ G + LL + T RS Y + N+RLEFLGD+VL I SD L+ F
Sbjct: 5 LERLQTVLGYQYQDAGLLQQALTHRSAYYKH-----NERLEFLGDSVLGFIISDALFRQF 59
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD------RADLLEA 342
PE EG LS +R++LV T + + + + I+ P +LK AD +EA
Sbjct: 60 PEVPEGDLSRMRATLVKGLTLAEIAREFELS-ECLILGPG-ELKSGGFRRESILADTVEA 117
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+GAMY+D +E + + RL D K++LQ+ L G + +P
Sbjct: 118 LIGAMYLDSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEW------LQGRKQPLP 171
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
+Y+V+E G +++ +T+ + + + G S ++AE AA+ AL++
Sbjct: 172 LYQVVEVRGEAHNQEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQKALEQ 221
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ FI S LF FP++ EG L+ RA +V+ LA +A+ L + ++ G
Sbjct: 43 GDSVLGFIISDALFRQFPEVPEGDLSRMRATLVKGLTLAEIAREFELSECLILGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ------------VFSSVLYKDNEVRFKQW 200
+ +A+ EAL+GA++LD I+ + + + KD + + ++W
Sbjct: 103 GGFRRESILADTVEALIGAMYLDSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEW 162
Query: 201 MYYPQHPL 208
+ + PL
Sbjct: 163 LQGRKQPL 170
>gi|414173889|ref|ZP_11428516.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
gi|410890523|gb|EKS38322.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
Length = 268
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 12/226 (5%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
+ +E G F LLA FT S + S QRLEFLGD VL LI SD LY FP
Sbjct: 42 KIIEERIGHTFADPALLATAFTHVSALKSARRGDSYQRLEFLGDHVLGLIVSDMLYRAFP 101
Query: 290 EHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANI--INPKVDLKMKDR--ADLLEAFLG 345
+ EG LS + LV + V +G+ + + ++++ D+ EA +G
Sbjct: 102 KADEGELSKRLADLVRREACADVAKSLGLDEAIKLGSVGAGAGARLRNSVLGDICEAVIG 161
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+++D G A QF + + R++ + + DPK+ LQ+ G P+Y+
Sbjct: 162 AVFLDGGYAAAAQFVERNWTERMRKPV--RPLRDPKTILQEWA------QGKGLPTPVYR 213
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+E GP + + VAV A+ G S + AE AA L++
Sbjct: 214 EVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAEKLAATALLKR 259
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAH----- 147
G++ I S L+ FP +EG L+ A +V+ + A +AK +GL++ +
Sbjct: 84 GDHVLGLIVSDMLYRAFPKADEGELSKRLADLVRREACADVAKSLGLDEAIKLGSVGAGA 143
Query: 148 GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHP 207
G+ L + V + + EA++GA+FLDGG A Q E + + M P P
Sbjct: 144 GARLRNSV-----LGDICEAVIGAVFLDGGYAAAAQFV--------ERNWTERMRKPVRP 190
Query: 208 LQE 210
L++
Sbjct: 191 LRD 193
>gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399]
gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399]
Length = 238
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 15/231 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGS---NQRLEFLGDTVLQLITSDYL 284
+L+ L GV F++I LL T S Y N + S N+RLEFLGD VL+L +S YL
Sbjct: 12 ELERLAAHMGVAFSNIALLDEALTHPS--YANESRDSIPHNERLEFLGDAVLELASSTYL 69
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y HFP+ EG L+ +R+SLV + T + + + + + + ++ DR ++
Sbjct: 70 YKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNNLENVF 129
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA +GA+Y+D+G E+ + P + Q D K+ LQ+ R +
Sbjct: 130 EAVIGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMS----- 184
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y+++ GP + + +T V E L + TG S ++AE AA AL K
Sbjct: 185 -VAYELVGESGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAAHALSK 234
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +S +L+ FP EG L RA++VQ+ LA LA+R+ L + HG
Sbjct: 57 GDAVLELASSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRG 116
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ ++ + N FEA++GA++LD G + A
Sbjct: 117 GGADRQNNLENVFEAVIGAVYLDRGWESA 145
>gi|414160536|ref|ZP_11416802.1| ribonuclease 3 [Staphylococcus simulans ACS-120-V-Sch1]
gi|410878056|gb|EKS25945.1| ribonuclease 3 [Staphylococcus simulans ACS-120-V-Sch1]
Length = 243
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 17/219 (7%)
Query: 238 VIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
+ ++H+ L + F+ S + L N+RLEFLGD VL+L S YLY+ +P EG+
Sbjct: 26 LTYDHLPLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLYDKYPGLPEGN 85
Query: 296 LSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYI 349
L+ LR+++V + + N I + I+ K + K R +D EAF+GA+Y+
Sbjct: 86 LTKLRATIVCEPSLVIFANKIKLNEL--ILLGKGEEKTGGRTRPSLVSDAFEAFVGALYL 143
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEH 409
D+G++ QF + FP ++ L D K++ Q+ + L+ G Y++I
Sbjct: 144 DQGLDVVWQFAQEVIFPYVEDDAL-MGVIDFKTQFQEY---IHRLNKGS---VTYRLIHE 196
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP + R +T V + E +A+ G + +++E AA+ A
Sbjct: 197 EGPAHHRLFTSEVLLEGEAVAEGQGRTKKESEQKAAEKA 235
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ +P + EG L RA IV L A +I L + +L G +
Sbjct: 62 GDAVLELTVSRYLYDKYPGLPEGNLTKLRATIVCEPSLVIFANKIKLNELILLGKGEEKT 121
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+++ FEA +GAL+LD G+DV Q V++
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQGLDVVWQFAQEVIF 159
>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
Length = 225
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
++K ++ LE F LL T +S +N+RLEFLGD VL L+ +YL
Sbjct: 1 MMKNIELLEQKLAYKFKDKDLLIHALTHKSFKKPY----NNERLEFLGDAVLDLVVGEYL 56
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
++ F + EG LS LR++LVN ++ + + N + + F + + + K++ +D L
Sbjct: 57 FHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDAL 116
Query: 341 EAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
EA +GA++++ G + FP++ L +++ K+KLQ+ +T L
Sbjct: 117 EAIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDY---KTKLQE--ITQAKLG-- 169
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
P Y+ + GP + + + +A++ + LA+A + ++A+ AAK+ L+K ++
Sbjct: 170 --QTPQYETVRAFGPDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLGAL 225
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+ + +
Sbjct: 44 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENN 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E +++ EA+MGA+ L+ G D A + ++ K+
Sbjct: 104 GGKEKPSILSDALEAIMGAIHLEAGFDFARNIALKLIEKN 143
>gi|403721061|ref|ZP_10944286.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
gi|403207401|dbj|GAB88617.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
Length = 244
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 20/216 (9%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL T RS Y N L +N+RLEFLGD+VL +I ++ LY +P+ EG L+ +R+S+V
Sbjct: 30 LLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVIITERLYLRYPDKTEGELAKIRASVV 89
Query: 305 NNRTQSVVCNDIGMPFFANII-----NPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACE 357
N + V ++G + + KD AD LE+ GA+Y++ G+ C+
Sbjct: 90 NMHALADVARELGPGGLGRHLYLGRGEELTGGRDKDSILADGLESLFGALYLEHGLAECK 149
Query: 358 QFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
F R + +W K+ LQ+ + +GG P + I GP +
Sbjct: 150 TVILGLFDEIIGRAGHLGAGLDW---KTSLQEL-----SAEGGYG--PPHYQITSTGPDH 199
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
++ +T E L + TG + ++AE AA +A Q
Sbjct: 200 NKEFTAVAVVAGESLGQGTGRTKKEAEQKAAALAWQ 235
>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 229
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 29/225 (12%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F+ I L T S S +RLEFLGD++L I + ++ FP+ EG L+ +
Sbjct: 18 FSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMFEQFPDMDEGALTRM 77
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA-----------DLLEAFLGAMY 348
++SLV+ +T S V +++G I P + +R ++ EA +GAMY
Sbjct: 78 KTSLVSGQTLSQVADELG-------IAPLIVFGESERGTGTRGMHSALENVYEALVGAMY 130
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWN--DPKSKLQQCCLTLRTLDGGEPDIPIYKV 406
+D G + F + +Y + + + PKS+LQ+ + ++P+Y++
Sbjct: 131 LDGGYDPTAAFIRRTL---AEYMVPQRAAHPISPKSELQEFSQRIYH------EMPVYEL 181
Query: 407 IEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
E GP + +T AVY E + + +G S ++++ AA+ AL K
Sbjct: 182 EEESGPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQAALDK 226
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ I + +F FPD++EG L + ++V Q L+ +A +G+ +++
Sbjct: 50 GDSILGAIIACDMFEQFPDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIVFGESERGT 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ A+ N +EAL+GA++LDGG D
Sbjct: 110 GTRGMHSALENVYEALVGAMYLDGGYD 136
>gi|451818132|ref|YP_007454333.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451784111|gb|AGF55079.1| ribonuclease 3 [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 232
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 12/232 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
L+ +E + GV FN+ LL T S N+RLEFLGD+VLQL +++L+N++
Sbjct: 6 LREIEENLGVYFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDSVLQLCITEHLFNNY 65
Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
EG L+ +RS +V + + I + + + + ++R AD +EA +
Sbjct: 66 KHKSEGELTKIRSLIVCENSLYEIAKKINLGNYIRMSKGEELTGGRERISIQADAVEAVI 125
Query: 345 GAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI- 403
A+Y+DKG+ F + F + I N+ D K+KLQ+ L DG ++ I
Sbjct: 126 AAVYLDKGIGFVRDFILLHFEEVINKAINNKIVLDFKTKLQE----LLQKDG---EVAIH 178
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
Y+++++ GP + R + V ++ + + +G S +++E NAAK AL I
Sbjct: 179 YELVKYEGPPHRRKFYTNVKIDDKLMGEGSGYSKKESEQNAAKQALDMLEGI 230
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ Q + HLF+ + EG L R+ IV L +AK+I L +++ + G +L
Sbjct: 49 GDSVLQLCITEHLFNNYKHKSEGELTKIRSLIVCENSLYEIAKKINLGNYIRMSKGEELT 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGI 178
E A+ EA++ A++LD GI
Sbjct: 109 GGRERISIQADAVEAVIAAVYLDKGI 134
>gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath]
gi|81682093|sp|Q608M7.1|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath]
Length = 230
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 22/235 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+++ ++L G+ F LL T RS N N+RLEFLGD+VL + ++YL
Sbjct: 1 MIRSHEHLARKLGIPFRDPGLLRNALTHRSAEGVN-----NERLEFLGDSVLGFVVTEYL 55
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK----MKDR--AD 338
Y FP EG LS LR++LVN + + + ++ + + +I +LK +D +D
Sbjct: 56 YQRFPSADEGVLSRLRATLVNETSLARIARELELGEY--LILGSGELKSGGYRRDSILSD 113
Query: 339 LLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
LEA LGA+ D+G++AC F L L+ DPK++LQ+ + G
Sbjct: 114 ALEAILGAVLRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQEL------MQGRG 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTV--AVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+P+Y +I+ G + + + V V E G+S ++AE AA+ L +
Sbjct: 168 LPLPVYTLIDQSGLPHDQHFRVRCEVPLAVEPCV-GEGSSRKKAEQQAAENMLSR 221
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + +L+ FP +EG L+ RA +V LA +A+ + L ++++ G
Sbjct: 43 GDSVLGFVVTEYLYQRFPSADEGVLSRLRATLVNETSLARIARELELGEYLILGSGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD-NEVRFKQWMYYPQHPLQE 210
+++ EA++GA+ D GID + ++ + + + W P+ LQE
Sbjct: 103 GGYRRDSILSDALEAILGAVLRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQE 161
>gi|451982016|ref|ZP_21930351.1| Ribonuclease III [Nitrospina gracilis 3/211]
gi|451760760|emb|CCQ91627.1| Ribonuclease III [Nitrospina gracilis 3/211]
Length = 241
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 21/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRS-MGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
+ +L L+ + G F I LL + T +S + + + +N+R EF+GD+VL ++ S Y+
Sbjct: 7 IDELAQLQINLGYTFKDILLLNKALTHKSYVNEKSEAIKNNERFEFMGDSVLDVVVSHYM 66
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLK-MKDR----ADL 339
F + EG LS +R+++VN + + DI + + ++ DL +D+ A+
Sbjct: 67 VKTFQDFSEGLLSKIRAAVVNEACLAGLARDICLGDYL-LLGRGEDLTGGRDKNSILANA 125
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFIL----NQEWNDPKSKLQQCCLTLRTLD 395
EA GA+Y D +E F PRL+ I + D KS+LQ + TL+
Sbjct: 126 FEAVAGAVYFDSNLETAYD----VFLPRLKKEIAQYAKTSRFRDFKSELQH--FSQNTLN 179
Query: 396 GGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
IP YKV++ GP + + + V V E + G S ++AE AA+ AL+
Sbjct: 180 C----IPFYKVVKETGPDHEKQFEVVVRTNGEEQGRGAGRSKKEAEQAAARSALE 230
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 18/145 (12%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S ++ F D EG L+ RAA+V LA LA+ I L D++L G DL
Sbjct: 54 GDSVLDVVVSHYMVKTFQDFSEGLLSKIRAAVVNEACLAGLARDICLGDYLLLGRGEDLT 113
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD-----NEVRFKQWMYYPQH- 206
+ +AN FEA+ GA++ D ++ A VF L K+ RF+ + QH
Sbjct: 114 GGRDKNSILANAFEAVAGAVYFDSNLETAYDVFLPRLKKEIAQYAKTSRFRDFKSELQHF 173
Query: 207 ------------PLQEQEPDGDRQW 219
++E PD ++Q+
Sbjct: 174 SQNTLNCIPFYKVVKETGPDHEKQF 198
>gi|30179749|sp|O69161.2|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 250
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM--PFF 321
S QRLEFLGD VL L+ SD LY+ FP EG LS + LV + + V +G+
Sbjct: 58 SYQRLEFLGDHVLGLVVSDMLYHAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIK 117
Query: 322 ANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWND 379
+ P D +++ D+ EA +GA+++D G A +F K + R+ + D
Sbjct: 118 LGSVGPSADARLRKSVLGDICEAVIGAIFLDGGHAAAAEFVKRNWTERMHK--PRRPLRD 175
Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
PK+ LQ+ G P+Y+ +E GP + + VAV A+ G S +
Sbjct: 176 PKTVLQEWA------QGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRA 229
Query: 440 AEMNAAKVALQK 451
AE AA V +++
Sbjct: 230 AEKVAASVMIER 241
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG-LEDFMLYAHGSDL 151
G++ + S L+H FP+ +EG L+ A +V+ + A +AK +G L+D L + G
Sbjct: 66 GDHVLGLVVSDMLYHAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSA 125
Query: 152 CHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQE 210
+ K + + EA++GA+FLDGG ++ K N + + M+ P+ PL++
Sbjct: 126 DARLR-KSVLGDICEAVIGAIFLDGG-----HAAAAEFVKRN---WTERMHKPRRPLRD 175
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,600,461,581
Number of Sequences: 23463169
Number of extensions: 354381488
Number of successful extensions: 990816
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4327
Number of HSP's successfully gapped in prelim test: 479
Number of HSP's that attempted gapping in prelim test: 971435
Number of HSP's gapped (non-prelim): 11633
length of query: 550
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 402
effective length of database: 8,886,646,355
effective search space: 3572431834710
effective search space used: 3572431834710
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)