BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3362
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif
Length = 85
Score = 107 bits (268), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/74 (67%), Positives = 61/74 (82%), Gaps = 1/74 (1%)
Query: 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
NDPKS+LQQCCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SI
Sbjct: 1 NDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSI 59
Query: 438 QQAEMNAAKVALQK 451
QQAEM AA AL+K
Sbjct: 60 QQAEMGAAMDALEK 73
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 20/241 (8%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITS 281
QS +K ++ LE S F LL T +S + +N+RLEFLGD VL L+
Sbjct: 21 QSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVG 76
Query: 282 DYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+YL++ F + EG VN ++ + + N + + F + + + K++ +
Sbjct: 77 EYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILS 136
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
D LEA +GA++++ G E + FP++ IL +++ K+KLQ+
Sbjct: 137 DALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDY---KTKLQEIT------ 187
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454
G P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K +
Sbjct: 188 QGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247
Query: 455 I 455
+
Sbjct: 248 L 248
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 67 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 126
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVAD------------QVFSSVLYKDNEVRFKQ 199
E +++ EA++GA+ L+ G + A Q+ + +L KD + + ++
Sbjct: 127 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQE 185
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii
From Mycobacterium Tuberculosis
Length = 242
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 14/199 (7%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXV 304
LL+ T RS Y N L +N+RLEFLGD VL L +D L++ P+ EG V
Sbjct: 22 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 81
Query: 305 NNRTQSVVCNDI---GMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACE 357
N + + V + G+ + + + D+ AD +E+ LGA+Y+ GME
Sbjct: 82 NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAR 141
Query: 358 QFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
+ F P L D K+ LQ+ R L P Y ++ GP + +
Sbjct: 142 EVILRLFGPLLDAAPTLGAGLDWKTSLQELT-AARGL-----GAPSY-LVTSTGPDHDKE 194
Query: 418 YTVAVYFKNERLAKATGNS 436
+T V + G S
Sbjct: 195 FTAVVVVMDSEYGSGVGRS 213
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 77 VISVIQIYRMYMYIHKG---NNFSQFITSI--------HLFHVFPDIEEGGLATYRAAIV 125
++S+ +R Y Y + G N +F+ LFH PD EG LA RA++V
Sbjct: 22 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 81
Query: 126 QNQHLAHLAKRI---GLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVAD 182
Q LA +A+R+ GL +L G + +A+ E+L+GA++L G++ A
Sbjct: 82 NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAR 141
Query: 183 QV----FSSVL-----------YKDN--EVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPL 225
+V F +L +K + E+ + + P + + PD D+++ +
Sbjct: 142 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVV 201
Query: 226 LKQLQYLEYSSGV 238
+ EY SGV
Sbjct: 202 MDS----EYGSGV 210
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 15/234 (6%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-----SNQRLEFLGDTVLQLITS 281
K ++ + +G+ F + LL R S G SN++LEFLGD VL+L
Sbjct: 19 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVC 78
Query: 282 DYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+ LY +PE G + ++V + + F + + +DR A
Sbjct: 79 EILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILA 138
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D EA L A+Y+D+G E ++ + F ++ + + D K+ LQ+ + +
Sbjct: 139 DAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKV--- 195
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P P Y ++ R + V V + +A G + ++AE AA++A +K
Sbjct: 196 -P--PEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEK 246
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
F+ I L+ +P+ E G LA ++A + LA +++++ L F+ G + +
Sbjct: 76 FVCEI-LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRD 134
Query: 159 HAMANCFEALMGALFLDGGIDVADQVFS 186
+A+ FEAL+ A++LD G + ++F
Sbjct: 135 SILADAFEALLAAIYLDQGYEKIKELFE 162
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 170
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 222 QSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITS 281
QS +K ++ LE S F LL T +S + +N+RLEFLGD VL L+
Sbjct: 21 QSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVG 76
Query: 282 DYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
+YL++ F + EG VN ++ + + N + + F + + + K++ +
Sbjct: 77 EYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILS 136
Query: 338 DLLEAFLGAMYIDKGME 354
D LEA +GA++++ G E
Sbjct: 137 DALEAIIGAIHLEAGFE 153
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 67 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 126
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E +++ EA++GA+ L+ G + A + ++ K+
Sbjct: 127 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKN 166
>pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 144
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL++ F
Sbjct: 2 IEKLEQSLTYEFKDKNLLIHALTHKSFXKKSY---NNERLEFLGDAVLDLVVGEYLFHKF 58
Query: 289 PEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFL 344
+ EG VN ++ + + N + + F + + + K++ +D LEA +
Sbjct: 59 AKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAII 118
Query: 345 GAMYIDKGME 354
GA++++ G E
Sbjct: 119 GAIHLEAGFE 128
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + +LFH F EG L+ RAA+V + A +A + L DF+L + +
Sbjct: 42 GDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKD 192
E +++ EA++GA+ L+ G + A + ++ K+
Sbjct: 102 GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKN 141
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
Length = 221
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 20/225 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 1 MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 56
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ P EG ++ +++ + + F I K++ + D+ EA
Sbjct: 57 QYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI--IGDVFEALWA 114
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILN-----QEWNDPKSKLQQCCLTLRTLDGGEPD 400
A+YID G +A F + F+ + IL+ + D K+ LQ+ +
Sbjct: 115 AVYIDSGRDA--NFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEIT------QKRWKE 166
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
P Y++I GP + + + V K R G S ++AE AA
Sbjct: 167 RPEYRLISVEGPHHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAA 210
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F L P+ EG L+ +A ++ + LA+++ L F+ G
Sbjct: 43 GDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGK--I 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+E + + FEAL A+++D G D
Sbjct: 101 NET----IIGDVFEALWAAVYIDSGRDA 124
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 20/225 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 1 MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 56
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ P EG ++ +++ + + F I K++ + D+ +A
Sbjct: 57 QYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI--IGDVFQALWA 114
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILN-----QEWNDPKSKLQQCCLTLRTLDGGEPD 400
A+YID G +A F + F+ + IL+ + D K+ LQ+ +
Sbjct: 115 AVYIDSGRDA--NFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEIT------QKRWKE 166
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
P Y++I GP + + + V K R G S ++AE AA
Sbjct: 167 RPEYRLISVEGPHHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAA 210
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 20/225 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 1 MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 56
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ P EG ++ +++ + + F I K++ + D+ +A
Sbjct: 57 QYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI--IGDVFKALWA 114
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILN-----QEWNDPKSKLQQCCLTLRTLDGGEPD 400
A+YID G +A F + F+ + IL+ + D K+ LQ+ +
Sbjct: 115 AVYIDSGRDA--NFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEIT------QKRWKE 166
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
P Y++I GP + + + V K R G S ++AE AA
Sbjct: 167 RPEYRLISVEGPHHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAA 210
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 20/225 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 1 MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 56
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ P EG ++ +++ + + F I K++ + D+ +A
Sbjct: 57 QYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI--IGDVFKALWA 114
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILN-----QEWNDPKSKLQQCCLTLRTLDGGEPD 400
A+YID G +A F + F+ + IL+ + D K+ LQ+ +
Sbjct: 115 AVYIDSGRDA--NFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEIT------QKRWKE 166
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
P Y++I GP + + + V K R G S ++AE AA
Sbjct: 167 RPEYRLISVEGPHHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAA 210
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 20/225 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ LE G F LL + T S + LEFLG+ ++ D L
Sbjct: 1 MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGNALVNFFIVDLLV 56
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ P EG ++ +++ + + F I K++ + D+ EA
Sbjct: 57 QYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI--IGDVFEALWA 114
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILN-----QEWNDPKSKLQQCCLTLRTLDGGEPD 400
A+YID G +A F + F+ + IL+ + D K+ LQ+ +
Sbjct: 115 AVYIDSGRDA--NFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEIT------QKRWKE 166
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445
P Y++I GP + + + V K R G S ++AE AA
Sbjct: 167 RPEYRLISVEGPHHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAA 210
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
GN F L P+ EG L+ +A ++ + LA+++ L F+ G
Sbjct: 43 GNALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGK--I 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+E + + FEAL A+++D G D
Sbjct: 101 NET----IIGDVFEALWAAVYIDSGRDA 124
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|B Chain B, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|C Chain C, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|D Chain D, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
Length = 341
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 86/203 (42%), Gaps = 30/203 (14%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQ---SVVCNDIGMPF 320
SN+RLEFLGD+ L + S +Y FP +EG VNN S N
Sbjct: 128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLN-FTKRL 186
Query: 321 FANIINPK--VDLKMKDR-ADLLEAFLGAMYIDK-GMEA------CEQFCKVCFFPRLQY 370
NI P V KM R AD +EA++GA+ ID+ G E E+ + Q
Sbjct: 187 QGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQM 246
Query: 371 FI---LNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNE 427
I LN+ + ++L Q L Y+ + + P + V V +
Sbjct: 247 VIKEPLNKNAKNELAELLQINKLGHKLH--------YRKLTEMPP-----FRVEVKIGDI 293
Query: 428 RLAKATGNSIQQAEMNAAKVALQ 450
L +A GNSI++AE AA L+
Sbjct: 294 LLDEAEGNSIREAEHRAAMKVLE 316
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+++ + S ++ FP EG L+ + +IV N +L + ++ +F G+
Sbjct: 136 GDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKL---NFTKRLQGNIAT 192
Query: 153 HEVELKHAM----ANCFEALMGALFLD 175
+K M A+C EA +GAL +D
Sbjct: 193 PTRVVKDKMSKRYADCVEAYIGALVID 219
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
Length = 756
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 266 QRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANII 325
QRLE LGD VL I + L FP+ G V N + + +G+P A
Sbjct: 335 QRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFS 394
Query: 326 NPKVDLKMKDRADLLEAFLGAMYI-DKGMEACEQF 359
N V K K AD+ E +G+++ G+ CE+F
Sbjct: 395 NNLVA-KSKTWADMYEEIVGSIFTGPNGIYGCEEF 428
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ FI + L +FPD G L + +V+N+ L +L + +GL +++
Sbjct: 341 GDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSN----- 395
Query: 153 HEVELKHAMANCFEALMGALF 173
+ V A+ +E ++G++F
Sbjct: 396 NLVAKSKTWADMYEEIVGSIF 416
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 72 GVVLFVISVIQIYRMYMYIHK----GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQN 127
G + F+I ++QI K G+ F + ++HL + P + EG L R + N
Sbjct: 629 GTIPFLIRLLQIALTPHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETN 688
Query: 128 QHLAHLAKRIG--LEDFMLYAHGSDLCHEVELKHAM-ANCFEALMGALFLDGGIDVA 181
L L KR + + ++ +H +++ + + FEA++ A+ L G + A
Sbjct: 689 SVLGRLTKRFPSVVSEVIIESH-----PKIQPDSKVYGDTFEAILAAILLACGEEAA 740
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
pdb|3RV1|B Chain B, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
Length = 246
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQ---SVVCNDIGMPF 320
SN+RLEFLGD+ L + S +Y FP +EG VNN S N
Sbjct: 128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLN-FTKRL 186
Query: 321 FANIINPK--VDLKMKDR-ADLLEAFLGAMYIDK 351
NI P V KM R AD ++A++GA+ ID+
Sbjct: 187 QGNIATPTRVVKDKMSKRYADCVQAYIGALVIDR 220
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 104/274 (37%), Gaps = 52/274 (18%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PD ++ + L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 2 PDAEKTL---NHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DXYQRLEFLG 57
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKV--- 329
D +L + + +LY +H G VNN + + + ++P++
Sbjct: 58 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHV 117
Query: 330 -------------------DLKM--------------KDRADLLEAFLGAMYIDKGMEAC 356
+L+ K D+ E+ GA+Y+D GM +
Sbjct: 118 IDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM-SL 176
Query: 357 EQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSR 416
E +V ++P +Q I N P+S +R L EP+ + E R
Sbjct: 177 EVVWQV-YYPMMQPLIEKFSANVPRS-------PVRELLEMEPETAKFSPAERTYDGKVR 228
Query: 417 SYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
TV V K + K G S + A+ AA+ AL+
Sbjct: 229 -VTVEVVGKGK--FKGVGRSYRIAKSAAARRALR 259
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
Length = 154
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 2 MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 57
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ P EG ++ +++ + + F I K++ + D+ EA
Sbjct: 58 QYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII--GDVFEALWA 115
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILN 374
A+YID G +A F + F+ + IL+
Sbjct: 116 AVYIDSGRDA--NFTRELFYKLFKEDILS 142
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F L P+ EG L+ +A ++ + LA+++ L F+ G
Sbjct: 44 GDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGK--I 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+E + + FEAL A+++D G D
Sbjct: 102 NET----IIGDVFEALWAAVYIDSGRD 124
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
Length = 147
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ LE G F LL + T S + LEFLGD ++ D L
Sbjct: 1 MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLV 56
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLG 345
+ P EG ++ +++ + + F I K++ + D+ EA
Sbjct: 57 QYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII--GDVFEALWA 114
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILN 374
A+YID G +A F + F+ + IL+
Sbjct: 115 AVYIDSGRDA--NFTRELFYKLFKEDILS 141
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ F L P+ EG L+ +A ++ + LA+++ L F+ G
Sbjct: 43 GDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGK--I 100
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+E + + FEAL A+++D G D
Sbjct: 101 NET----IIGDVFEALWAAVYIDSGRD 123
>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 91/249 (36%), Gaps = 53/249 (21%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXX 299
F + L + FT S Y +T QRLEFLGD +L + + +LY +H G
Sbjct: 26 FKNKAYLLQAFTHASYHYNTIT-DXYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDL 84
Query: 300 XXXXVNNRTQSVVCNDIGMPFFANIINPKV----------------------DLKM---- 333
VNN + + + ++P++ +L+
Sbjct: 85 RSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGXDSELRRSEED 144
Query: 334 ----------KDRADLLEAFLGAMYIDKG--MEACEQFCKVCFFPRLQYFILNQEWNDPK 381
K D+ E+ GA+Y D G +E Q ++P Q I N P+
Sbjct: 145 EEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQ----VYYPXXQPLIEKFSANVPR 200
Query: 382 SKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAE 441
S +R L EP+ + E R TV V K + K G S + A+
Sbjct: 201 S-------PVRELLEXEPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAK 250
Query: 442 MNAAKVALQ 450
AA+ AL+
Sbjct: 251 SAAARRALR 259
>pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
Length = 200
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 39/179 (21%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXX 299
F + L + FT S Y +T QRLEFLGD +L + + +LY +H G
Sbjct: 19 FKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDL 77
Query: 300 XXXXVNNRTQSVVCNDIGM--------PFFANIINPKVDLKM------------------ 333
VNN + + P ++I+ V ++
Sbjct: 78 RSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEED 137
Query: 334 ----------KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKS 382
K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S
Sbjct: 138 EEKEEDIEVPKAMGDIFESLAGAIYMDSGM-SLETVWQV-YYPMMRPLIEKFSANVPRS 194
>pdb|1X49|A Chain A, Solution Structure Of The First Dsrm Domain In Interferon-
Induced, Double-Stranded Rna-Activated Protein Kinase
Length = 97
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 404 YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
YK + GP + R +T V + +A G S Q+A AAK+A+
Sbjct: 33 YKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAV 78
>pdb|3BBL|A Chain A, Crystal Structure Of A Regulatory Protein Of Laci Family
From Chloroflexus Aggregans
Length = 287
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 184 VFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHI 243
V SS+ Y D V+F +P PD D WV+ Q +EY G I
Sbjct: 69 VLSSINYNDPRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRGHRRI 128
Query: 244 RLLA-----RVFTTRSMGY 257
+LA RV R GY
Sbjct: 129 AILAWPEDSRVGNDRLQGY 147
>pdb|3NOL|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Trigonal Form)
pdb|3NOM|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
pdb|3NOM|B Chain B, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
Length = 262
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 18/108 (16%)
Query: 399 PDIPIYKV-IEHVGPTNSRSYTVAVYFKNERLAKATG----NSIQQAEMNAAKVALQKCP 453
P IPIY I H P +++++T +++N ++TG +SI++ ++ + K LQ
Sbjct: 24 PSIPIYDYQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGK-TLQ--- 79
Query: 454 SICPQLDHQKRVIAKSIELQKHEGIFGAWASFSCWVGLGVCALLKLCR 501
Q++ KR + I K + + W + GLG ++ R
Sbjct: 80 ----QIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFVWNIRNLR 118
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 373 LNQEWNDPKSKLQQCCLTLRTLDGGEP---DIPIYKVIEHVGPTNSRSYTVAVYFKNERL 429
L ++W+ P S ++ CL+L + + P +YK E V +YT A Y+K +
Sbjct: 956 LGEKWSHPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQV------TYTCATYYKMDGA 1009
Query: 430 AKAT 433
+ T
Sbjct: 1010 SNVT 1013
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 373 LNQEWNDPKSKLQQCCLTLRTLDGGEP---DIPIYKVIEHVGPTNSRSYTVAVYFKNERL 429
L ++W+ P S ++ CL+L + + P +YK E V +YT A Y+K +
Sbjct: 956 LGEKWSHPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQV------TYTCATYYKMDGA 1009
Query: 430 AKAT 433
+ T
Sbjct: 1010 SNVT 1013
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 373 LNQEWNDPKSKLQQCCLTLRTLDGGEP---DIPIYKVIEHVGPTNSRSYTVAVYFKNERL 429
L ++W+ P S ++ CL+L + + P +YK E V +YT A Y+K +
Sbjct: 53 LGEKWSHPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQV------TYTCATYYKMDGA 106
Query: 430 AKAT 433
+ T
Sbjct: 107 SNVT 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,322,391
Number of Sequences: 62578
Number of extensions: 664996
Number of successful extensions: 1589
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 52
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)