BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3362
(550 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2
Length = 1374
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/380 (59%), Positives = 296/380 (77%), Gaps = 9/380 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAK 468
L+K PQ+ HQKR I +
Sbjct: 1329 LEKY--NFPQMAHQKRFIER 1346
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 958 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1017
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1018 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1076
Query: 371 FILN 374
LN
Sbjct: 1077 VWLN 1080
>sp|Q5HZJ0|RNC_MOUSE Ribonuclease 3 OS=Mus musculus GN=Drosha PE=1 SV=1
Length = 1373
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/381 (59%), Positives = 296/381 (77%), Gaps = 9/381 (2%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 971 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1030
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1031 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1089
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1090 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1149
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGHL+LLRSSLVNNRTQ+ V ++GM +A I N K
Sbjct: 1150 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1208
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1209 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1268
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1269 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1327
Query: 449 LQKCPSICPQLDHQKRVIAKS 469
L+K PQ+ HQKR I +
Sbjct: 1328 LEKY--NFPQMAHQKRFIERK 1346
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 258 TNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG 317
T + N+RLEFLGD V++ +TS +LY FP EG L+ R+++V N+ +++ +
Sbjct: 957 TPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE 1016
Query: 318 MPFF-----ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFF--PRLQY 370
+ F + + DL+ A+ EA +GA+Y++ +E +Q F P L+
Sbjct: 1017 LDRFMLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLRE 1075
Query: 371 FILN 374
LN
Sbjct: 1076 VWLN 1079
>sp|O01326|RNC_CAEEL Ribonuclease 3 OS=Caenorhabditis elegans GN=drsh-1 PE=2 SV=2
Length = 1086
Score = 358 bits (919), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 174/365 (47%), Positives = 252/365 (69%), Gaps = 3/365 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL
Sbjct: 697 GDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLI 756
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E KHA+AN FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++
Sbjct: 757 NVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKRED 816
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 817 PQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLG 876
Query: 273 DTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINP--KVD 330
D+VLQLI SD+LY FP HHEGH+SLLR+SLV+N+TQ+VVC+D+G F I P +
Sbjct: 877 DSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYKTPE 935
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LK+KD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL
Sbjct: 936 LKLKDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLA 995
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+R EPD+P Y+V+ GPTN+R + +AVY+K +RLA A +++ +AE+ A++AL
Sbjct: 996 MRDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALA 1055
Query: 451 KCPSI 455
S+
Sbjct: 1056 NLESM 1060
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF--- 321
N+RLE+LGD V++LI S +LY H EG L+ R++LV NR + + + +
Sbjct: 690 NERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQY 749
Query: 322 ---ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYF---ILNQ 375
A++IN V A+ EA + A+Y+D G+ C+ F + Y +L +
Sbjct: 750 SHGADLIN--VAEFKHALANAFEAVMAAIYLDGGLAPCD-----VIFSKAMYGHQPVLKE 802
Query: 376 EWN 378
+W+
Sbjct: 803 KWD 805
>sp|Q61XX9|RNC_CAEBR Ribonuclease 3 OS=Caenorhabditis briggsae GN=drsh-1 PE=3 SV=1
Length = 1061
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 244/352 (69%), Gaps = 3/352 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HLF + EGGLATYR A+VQN++LA LA +++ + +AHG+DL
Sbjct: 675 GDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQFAHGADLI 734
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
+E E KHA+AN FEALM +FLD GI D +FS +Y KD E++ K W + +H L+ +
Sbjct: 735 NEAEWKHALANAFEALMAGVFLDSGIAPCDAIFSKAMYGKDPEMK-KVWDHLNEHELKIE 793
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
+P GDR +P L LE G+ FN+IRLLA+ FT R++ + +LT G NQRLE+L
Sbjct: 794 DPLGDRDLSRITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWL 853
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGM-PFFANIINPKVD 330
GD+VLQLI SDYLY +FP HHEGH+SLLR+SLV+N+TQSVVC+D+G F + K D
Sbjct: 854 GDSVLQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPHRKND 913
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LKMKD+ADL+EAF+GA+Y+DKG+E C F + F PRL++FI +++WND KS LQQ CL
Sbjct: 914 LKMKDKADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLA 973
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEM 442
+R P +P Y+++ GPTN+R + VAVYF+ ERL+ A +++ AE+
Sbjct: 974 IRDSRNPNPAMPEYRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAEL 1025
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVV---CNDIGMPFF 321
N+RLE+LGD V++LI S +L+ H EG L+ R++LV NR + + C M F
Sbjct: 668 NERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQF 727
Query: 322 ANIINPKVDLKMKDR-ADLLEAFLGAMYIDKGMEACEQ-FCKVCF 364
A+ + + + K A+ EA + +++D G+ C+ F K +
Sbjct: 728 AHGADLINEAEWKHALANAFEALMAGVFLDSGIAPCDAIFSKAMY 772
>sp|Q9CHD0|RNC_LACLA Ribonuclease 3 OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=rnc PE=3 SV=1
Length = 231
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQKKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQI--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I YK+++ GP + RS+ AV+ + L + G S + AE AA+ A++
Sbjct: 172 --GGETTIS-YKILKEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 116 TTLENLFEAFLGALFIDQGMD 136
>sp|Q030F9|RNC_LACLS Ribonuclease 3 OS=Lactococcus lactis subsp. cremoris (strain SK11)
GN=rnc PE=3 SV=1
Length = 231
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQEKLKNDYGLVFNDEDLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQV--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I Y +++ GP + RS+ AVY + L + G S + AE AA+ A++
Sbjct: 172 --GGETTI-TYNILKEEGPAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 116 TTLENLFEAFLGALFIDQGMD 136
>sp|C0MCR4|RNC_STRS7 Ribonuclease 3 OS=Streptococcus equi subsp. zooepidemicus (strain
H70) GN=rnc PE=3 SV=1
Length = 230
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 129/242 (53%), Gaps = 24/242 (9%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE S + F+ RLL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEALLENSFNIRFDDKRLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS++V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKQTEGDMSKLRSTIV--REESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E +F P++ ++ K K + C L+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQV------EQGTFEKVKDYKTC--LQEL 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + VAV +RL+K TG S + AE +AAK AL +
Sbjct: 169 LQAKGDVVIDYQVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD GI+ + + V+
Sbjct: 110 GGRHRDTILGDLFEAFLGALLLDKGIEEVRRFLNQVM 146
>sp|A2RLZ8|RNC_LACLM Ribonuclease 3 OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=rnc PE=3 SV=1
Length = 231
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLIT 280
+LK + L+ G++FN LL FT S +TN + +N+RLEFLGD L L+
Sbjct: 1 MLKLQKKLKNDYGLVFNDEYLLKTAFTHSS--FTNEERLPKIANNERLEFLGDVALSLVI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
SDYLY +PE EG LS +RSS+V + + G F + + + + +DR
Sbjct: 59 SDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRT 393
+L EAFLGA++ID+GM+ +F + P ++ N ++ D K++LQ+
Sbjct: 119 ENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVK----NDDYVKVIDYKTELQEVLQI--- 171
Query: 394 LDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
GGE I YK+++ GP + RS+ AV+ + L + G S + AE AA+ A++
Sbjct: 172 --GGETTIS-YKILKEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 99 FITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELK 158
+ S +L+ +P+ EG L+ R++IV+ + LA+ ++ G +F+ HG + + +
Sbjct: 56 LVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE 115
Query: 159 HAMANCFEALMGALFLDGGID 179
+ N FEA +GALF+D G+D
Sbjct: 116 TTLENLFEAFLGALFIDQGMD 136
>sp|A8AWC2|RNC_STRGC Ribonuclease 3 OS=Streptococcus gordonii (strain Challis / ATCC
35105 / CH1 / DL1 / V288) GN=rnc PE=3 SV=1
Length = 232
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 18/240 (7%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ L + G++F + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLENLLFDRFGLVFKDVSLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG L+ LRS++V + + D F + + ++R
Sbjct: 59 SEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E + F P+++ Q D K+KLQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGLEVVKNFIYQVMIPKVEAGDFEQ-VTDYKTKLQELLQS-----N 172
Query: 397 GEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
G+ +I +Y+V+ GP +++++ V+V + K G S + AE AAK A +K C
Sbjct: 173 GDVEI-LYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKENHSC 231
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L R+ IV+ + LA ++ + F+ G +
Sbjct: 50 GDAVLQLIISEYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEV-RFKQWMYYPQHPLQEQ 211
E + + + FEA +GAL LD G++V V+ E F+Q Y +
Sbjct: 110 GGRERETILGDLFEAFLGALLLDKGLEVVKNFIYQVMIPKVEAGDFEQVTDYKTKLQELL 169
Query: 212 EPDGD 216
+ +GD
Sbjct: 170 QSNGD 174
>sp|A3CP46|RNC_STRSV Ribonuclease 3 OS=Streptococcus sanguinis (strain SK36) GN=rnc PE=3
SV=1
Length = 232
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 19/228 (8%)
Query: 238 VIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
++F+ LL FT S Y N L + N+RLEFLGD VLQLI S+YLY +P+ E
Sbjct: 14 LVFSDETLLETAFTHTS--YANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPE 71
Query: 294 GHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYI 349
G LS LRS +V + + D F + + ++R DL EAFLGA+ +
Sbjct: 72 GDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLL 131
Query: 350 DKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIE 408
DKG+EA + F P+++ + D K+KLQ+ L ++G D+ I Y+V+
Sbjct: 132 DKGVEAVKSFLYQVMIPKVEAGDF-ERVTDYKTKLQE----LLQING---DVEIAYQVVS 183
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456
GP +++++ VAV + + G S + AE AAK A +K S C
Sbjct: 184 ETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKESSSC 231
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +L+ +P EG L+ R+ IV+ + LA A+ + F+ G +
Sbjct: 50 GDAVLQLIISEYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEAVKSFLYQVM 146
>sp|Q5M3S3|RNC_STRT2 Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-250 /
LMG 18311) GN=rnc PE=3 SV=1
Length = 237
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 14 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 71
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 72 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 131
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G+ DI
Sbjct: 132 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVI-DYKTALQE-----RLQVNGKVDI 185
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y VI+ GP +++ +T+ V + L+ G S + AE AAK AL++
Sbjct: 186 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQ 234
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 58 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 118 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154
>sp|Q5LZ68|RNC_STRT1 Ribonuclease 3 OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=rnc PE=3 SV=1
Length = 237
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 14 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 71
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 72 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 131
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G+ DI
Sbjct: 132 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVI-DYKTALQE-----RLQVNGKVDI 185
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y VI+ GP +++ +T+ V + L+ G S + AE AAK AL++
Sbjct: 186 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQ 234
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 58 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 117
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 118 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 154
>sp|Q03K17|RNC_STRTD Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-491 /
LMD-9) GN=rnc PE=3 SV=1
Length = 229
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 230 QYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLY 285
Q LE G++F+ LL FT S Y N L + N+RLEFLGD LQL+ S YLY
Sbjct: 6 QKLEQDFGIVFSQKDLLETAFTHTS--YANEHRLLNISHNERLEFLGDAALQLVISVYLY 63
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLE 341
N +P EG +S +RS++V + + G + + + ++RA DL E
Sbjct: 64 NRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWE 123
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
AFLGA+Y+D+G+ A E+F P+++ ++ D K+ LQ+ R G+ DI
Sbjct: 124 AFLGALYLDQGLPAVEKFLNQVMIPQVEKGNFDRVI-DYKTALQE-----RLQVNGKVDI 177
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y VI+ GP +++ +T+ V + L+ G S + AE AAK AL++
Sbjct: 178 -TYTVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQ 226
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S++L++ +P+ EG ++ R+ IV+ + LA K G E ++ G +
Sbjct: 50 GDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E + + +EA +GAL+LD G+ ++ + V+
Sbjct: 110 GGRERATILGDLWEAFLGALYLDQGLPAVEKFLNQVM 146
>sp|C0M8Y3|RNC_STRE4 Ribonuclease 3 OS=Streptococcus equi subsp. equi (strain 4047)
GN=rnc PE=3 SV=1
Length = 230
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 128/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE S + F+ RLL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKKLEALLENSFNIRFDDKRLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS++V R +S+ F A I + + K R
Sbjct: 59 SEYLFAKYPKQTEGDMSKLRSTIV--REESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E +F P++ ++ K K + C L+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQV------EQGTFEKVKDYKTC--LQEL 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + VAV + L+K TG S + AE +AAK AL +
Sbjct: 169 LQAKGDVVIDYQVISETGPAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD GI+ + + V+
Sbjct: 110 GGRHRDTILGDLFEAFLGALLLDKGIEEVRRFLNQVM 146
>sp|Q82ZG1|RNC_ENTFA Ribonuclease 3 OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=rnc PE=3 SV=1
Length = 230
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 19/226 (8%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHH 292
G++F+ + LL + FT S Y N L L N+RLEFLGD VL+LI S YLY FPE
Sbjct: 14 GIVFHDVNLLEQAFTHSS--YVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELP 71
Query: 293 EGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMY 348
EG L+ +R+++V + + + + + + + RA DL EAFLGA+Y
Sbjct: 72 EGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAFLGALY 131
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVI 407
+D+ + A ++F + FP++ + E D K++LQ+ + D+ I Y++I
Sbjct: 132 LDQKVGAAKKFIEDVIFPKIDAGAFSHEM-DHKTQLQEVLQR-------KGDVSIEYRLI 183
Query: 408 EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ GP + R++ VY E + G S + AE +AA+ AL+ P
Sbjct: 184 KEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIP 229
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S +L+ FP++ EG L RAAIV+ LA AK ++++L G +
Sbjct: 51 GDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEAS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FEA +GAL+LD + A + V++
Sbjct: 111 GGRTRASLLCDLFEAFLGALYLDQKVGAAKKFIEDVIF 148
>sp|P0DF15|RNC_STRPQ Ribonuclease 3 OS=Streptococcus pyogenes serotype M3 (strain SSI-1)
GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|Q1J7V3|RNC_STRPF Ribonuclease 3 OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|Q1JMX4|RNC_STRPC Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|Q1JCZ9|RNC_STRPB Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|P66672|RNC_STRP8 Ribonuclease 3 OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|P0DF14|RNC_STRP3 Ribonuclease 3 OS=Streptococcus pyogenes serotype M3 (strain ATCC
BAA-595 / MGAS315) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|P66670|RNC_STRP1 Ribonuclease 3 OS=Streptococcus pyogenes serotype M1 GN=rnc PE=1
SV=1
Length = 230
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|Q48UR6|RNC_STRPM Ribonuclease 3 OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 127/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++A +F K P+++ + D K+ LQ+ T
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNF-ERVRDYKTCLQEFLQT---- 171
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 172 ---KGDVAIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R + + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVRDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|B5XKB7|RNC_STRPZ Ribonuclease 3 OS=Streptococcus pyogenes serotype M49 (strain
NZ131) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVVIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|A2RFW8|RNC_STRPG Ribonuclease 3 OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVVIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|Q5XDA6|RNC_STRP6 Ribonuclease 3 OS=Streptococcus pyogenes serotype M6 (strain ATCC
BAA-946 / MGAS10394) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 28/244 (11%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT--LR 392
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + CL L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTCLQEFLQ 170
Query: 393 TLDGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
T + D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 171 T----KGDVVIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQ 226
Query: 452 CPSI 455
+
Sbjct: 227 LSEV 230
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|Q1JI19|RNC_STRPD Ribonuclease 3 OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=rnc PE=3 SV=1
Length = 230
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 127/242 (52%), Gaps = 24/242 (9%)
Query: 226 LKQLQYLEYSS-GVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+KQL+ L +S + FN + LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKQLEELLSTSFDIQFNDLTLLETAFTHTS--YANEHRLLNVSHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P+ EG +S LRS +V R +S+ F A I K + K R
Sbjct: 59 SEYLFAKYPKKTEGDMSKLRSMIV--REESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG++A +F K P++ ++ N + K + C L+
Sbjct: 117 ILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQV------EKGNFERVKDYKTC--LQEF 168
Query: 395 DGGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453
+ D+ I Y+VI GP +++ + V++ L+K G S + AE +AAK AL +
Sbjct: 169 LQAKGDVVIDYQVISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLS 228
Query: 454 SI 455
+
Sbjct: 229 EV 230
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG ++ R+ IV+ + LA ++ + ++ G +
Sbjct: 50 GDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY----KDNEVRFKQWMYYPQHPL 208
+ + FEA +GAL LD GID + V+ K N R K + Q L
Sbjct: 110 GGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFL 169
Query: 209 Q 209
Q
Sbjct: 170 Q 170
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 46 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 105
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G++A +
Sbjct: 106 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLDAASELV 165
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +P Y V E GP + +++T
Sbjct: 166 HRLFDPLIEKSSNLGAGLDWKTSLQELTATEGL------GVPEYLVTE-TGPDHEKTFTA 218
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHE 476
A TG S ++AE AA+ A + SI D + + A +++ E
Sbjct: 219 AARVGGVSYGTGTGRSKKEAEQQAAESAWR---SIRAAADERAKATADAVDADPDE 271
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 73 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 132
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G+D A + +F ++ K + E+
Sbjct: 133 GGRDKASILADTLEAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 192
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 193 TATEGLGVPEYLVTETGPDHEKTFT 217
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 17/211 (8%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
+L R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 25 ILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLSEGQLAKLRAAVV 84
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N R + V ++G+ + + + +D+ AD LEA +GA+Y+D+G++ +
Sbjct: 85 NMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGAVYLDRGLDEASELV 144
Query: 361 KVCFFP---RLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
F P R +W K+ LQ+ LT L G +P Y V+E GP + ++
Sbjct: 145 HRLFDPLIARASGLGAGLDW---KTSLQE--LTAAELLG----VPEY-VVEESGPDHQKT 194
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+ V + G S ++AE AA+ A
Sbjct: 195 FRATVRVAGQTYGSGEGRSKKEAEQQAAESA 225
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 68 TIFVGVVLFVISVIQIYRMYMYIHKG---NNFSQF--------ITSIHLFHVFPDIEEGG 116
T+ V + +++ +R Y Y + G N +F + + L+ PD+ EG
Sbjct: 16 TVGVEIAPDILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLSEGQ 75
Query: 117 LATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDG 176
LA RAA+V + LA +A+ +G+ ++ G + + +A+ EAL+GA++LD
Sbjct: 76 LAKLRAAVVNMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGAVYLDR 135
Query: 177 GIDVADQ----VFSSVLYKDN-------------EVRFKQWMYYPQHPLQEQEPD 214
G+D A + +F ++ + + E+ + + P++ ++E PD
Sbjct: 136 GLDEASELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEYVVEESGPD 190
>sp|B2GD42|RNC_LACF3 Ribonuclease 3 OS=Lactobacillus fermentum (strain NBRC 3956 / LMG
18251) GN=rnc PE=3 SV=1
Length = 232
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 225 LLKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSN----QRLEFLGDTVLQLI 279
++ QLQ YL + G+ FN+ LLA FT S Y N N +R+EFLGD VLQL
Sbjct: 1 MITQLQDYLAKTYGIHFNNPALLAEAFTQAS--YVNEHPHENLKYYERIEFLGDAVLQLF 58
Query: 280 TSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA-- 337
S+Y+Y +PE +G L+ LR+++V + S + + + + ++RA
Sbjct: 59 VSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASL 118
Query: 338 --DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLD 395
D+ E+F+GA+Y+D+G +A EQF + FP+L + D K+ LQ+
Sbjct: 119 LCDIFESFIGALYLDQGRQAVEQFIQTVIFPKLDLGWFDHAV-DAKTSLQEFLQR----- 172
Query: 396 GGEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ G N + V V +++A G+S + AEM AAK AL+K
Sbjct: 173 --NGDVAIEYDLLSEGGTENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEK 227
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q S +++ +P++ +G L RAA+V + AK + ++ G ++
Sbjct: 51 GDAVLQLFVSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+ + FE+ +GAL+LD G +Q +V++
Sbjct: 111 GARNRASLLCDIFESFIGALYLDQGRQAVEQFIQTVIF 148
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 221 EQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG----SNQRLEFLGDTVL 276
+Q P +K Q+ E +G+ F + +LL + FT S Y N N+RLEFLGD VL
Sbjct: 3 KQRPYVKFKQFQE-QTGIFFRNEKLLIQAFTHSS--YVNEHRKRLHEDNERLEFLGDAVL 59
Query: 277 QLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR 336
+L S YL+ FP+ EG L+ +R+++V S+V + F ++ K + R
Sbjct: 60 ELTVSQYLFEQFPQMSEGELTKMRAAIVCE--PSLVTFAHALSFGDLVLLGKGEELTGGR 117
Query: 337 ------ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
AD+ EAF+GA+Y+D+G+EA QF FP+++ + D KS+LQ+
Sbjct: 118 MRPSLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSH-VMDYKSQLQEFV-- 174
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
DG + YK+++ GP +++ + V E L G S ++AE AA++AL
Sbjct: 175 --QRDG--SGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALA 230
Query: 451 KCPSI 455
K +
Sbjct: 231 KLKQL 235
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + D +L G +L
Sbjct: 55 GDAVLELTVSQYLFEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELT 114
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD GI+ Q ++ K E F M Y LQE
Sbjct: 115 GGRMRPSLLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQ-LQE 172
>sp|Q8E0K7|RNC_STRA5 Ribonuclease 3 OS=Streptococcus agalactiae serotype V (strain ATCC
BAA-611 / 2603 V/R) GN=rnc PE=3 SV=2
Length = 228
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F + LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S YL+ +P+ EG LS LRS +V + + G + + + ++R
Sbjct: 59 SQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E F P ++ + D K+ LQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTY-ERVKDYKTSLQELLQS------ 171
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
D+ I Y+V GP +++ + V V E L++ G S + AE +AAK AL
Sbjct: 172 -HGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G + ++ G +
Sbjct: 50 GDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++V + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 146
>sp|Q8E680|RNC_STRA3 Ribonuclease 3 OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=rnc PE=3 SV=1
Length = 228
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F + LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S YL+ +P+ EG LS LRS +V + + G + + + ++R
Sbjct: 59 SQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E F P ++ + D K+ LQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTY-ERVKDYKTSLQELLQS------ 171
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
D+ I Y+V GP +++ + V V E L++ G S + AE +AAK AL
Sbjct: 172 -HGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G + ++ G +
Sbjct: 50 GDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++V + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 146
>sp|Q3K1Y2|RNC_STRA1 Ribonuclease 3 OS=Streptococcus agalactiae serotype Ia (strain ATCC
27591 / A909 / CDC SS700) GN=rnc PE=3 SV=1
Length = 228
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 226 LKQLQ-YLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K+L+ LE G++F + LL FT S Y N L + N+RLEFLGD VLQL+
Sbjct: 1 MKELRSKLEKDYGIVFANQELLDTAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLLI 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S YL+ +P+ EG LS LRS +V + + G + + + ++R
Sbjct: 59 SQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTIL 118
Query: 337 ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDG 396
DL EAFLGA+ +DKG+E F P ++ + D K+ LQ+ +
Sbjct: 119 GDLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTY-ERVKDYKTSLQELLQS------ 171
Query: 397 GEPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
D+ I Y+V GP +++ + V V E L++ G S + AE +AAK AL
Sbjct: 172 -HGDVKIDYQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q + S +LF +P EG L+ R+ IV+ + LA ++ G + ++ G +
Sbjct: 50 GDAVLQLLISQYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++V + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEVVHAFVNKVM 146
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 11/208 (5%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
LL R T RS Y N L +N+RLEFLGD+VL L+ +D LY P+ EG L+ LR+++V
Sbjct: 36 LLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVV 95
Query: 305 NNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACEQFC 360
N+R + V + + F + + +D+ AD LEA +GA+Y+D+G+EA +
Sbjct: 96 NSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVIGAVYLDQGLEAAGELV 155
Query: 361 KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420
F P ++ D K+ LQ+ T +G +P Y V E GP + +++T
Sbjct: 156 HRLFDPLIEKSSNLGAGLDWKTSLQELTAT----EG--LGVPEYLVTE-TGPDHEKTFTA 208
Query: 421 AVYFKNERLAKATGNSIQQAEMNAAKVA 448
A TG S ++AE AA+ A
Sbjct: 209 AARVGGVSYGTGTGRSKKEAEQQAAESA 236
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + + L+ PD+ EG LA RAA+V ++ LA + + + L F+ G +
Sbjct: 63 GDSVLGLVVTDTLYRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ----VFSSVLYKDN-------------EV 195
+ +A+ EA++GA++LD G++ A + +F ++ K + E+
Sbjct: 123 GGRDKASILADTLEAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQEL 182
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWV 220
+ + P++ + E PD ++ +
Sbjct: 183 TATEGLGVPEYLVTETGPDHEKTFT 207
>sp|A4J683|RNC_DESRM Ribonuclease 3 OS=Desulfotomaculum reducens (strain MI-1) GN=rnc
PE=3 SV=1
Length = 246
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYL 284
+Q L+ G +++ LL + T S + N G NQRLEFLGD VL+LI S++L
Sbjct: 6 EQANRLKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHL 65
Query: 285 YNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLL 340
Y FP+ EG L+ +R+S V + + V + + + + ++R AD
Sbjct: 66 YKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAF 125
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA LGA+Y+D+G+E F C + + + D K++LQ+ L PD
Sbjct: 126 EALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQE------ILQQSSPD 179
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
Y +++ GP + +++T V +K + + K +G+S ++AE AAK A Q
Sbjct: 180 PLTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQ 229
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ +FPD EG L RA+ V LA +A+ + L + G +
Sbjct: 53 GDAVLELIISEHLYKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA------------DQVFSSVLYKDNEVRFKQW 200
E +A+ FEAL+GA++LD G++++ D V + L +D +
Sbjct: 113 GGRERPSILADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTEL--- 169
Query: 201 MYYPQHPLQEQEPD 214
Q LQ+ PD
Sbjct: 170 ----QEILQQSSPD 179
>sp|A5D1H6|RNC_PELTS Ribonuclease 3 OS=Pelotomaculum thermopropionicum (strain DSM 13744
/ JCM 10971 / SI) GN=rnc PE=3 SV=1
Length = 241
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 122/244 (50%), Gaps = 17/244 (6%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLY 285
+L L+ G+ + LL R T S Y N G +NQRLEFLGD VL+L SDYLY
Sbjct: 7 KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
PE EG L+ LR+S+V + + V ++ + + + +DR AD E
Sbjct: 67 RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A LGA+Y+D+G+E P + + + D K++LQ+ L GGE
Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQE----LVQQRGGEQ-- 180
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP--SICPQL 459
Y +++ GP + +S+T V ++ + + TG S ++AE AAK AL K S C
Sbjct: 181 VQYVILKEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMKSDLGSAC--- 237
Query: 460 DHQK 463
+H+K
Sbjct: 238 NHKK 241
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +L+ P+++EG L RA++V LA +A+ + L + G +
Sbjct: 53 GDAVLELAVSDYLYRSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERS 112
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ +A+ FEAL+GA++LD G++ A
Sbjct: 113 GGRDRPSILADAFEALLGAVYLDQGLEKA 141
>sp|Q88WK0|RNC_LACPL Ribonuclease 3 OS=Lactobacillus plantarum (strain ATCC BAA-793 /
NCIMB 8826 / WCFS1) GN=rnc PE=3 SV=1
Length = 231
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 15/219 (6%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G++FN LLA FT S + + L +R+EFLGD VL+L+ S+YLY + + +G
Sbjct: 14 GIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYKDMPQG 73
Query: 295 HLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
L+ LR+++V + + + P + + + +R D+ E+F+GA+Y+D
Sbjct: 74 KLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLCDIFESFVGALYLD 133
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI-YKVIEH 409
+G E +F FP+L + + D K+ LQ+ DG D+ I Y++IE
Sbjct: 134 QGREPVLKFVHQVIFPKLDEGRFDGVF-DYKTTLQEYL----QRDG---DVAIDYQLIEQ 185
Query: 410 VGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
GP N RSY +AV +++ + G+S ++AE +AA+ A
Sbjct: 186 DGPANERSYEIAVLADGQKIGEGWGHSKKEAEQSAARQA 224
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + S +L+ + D+ +G L RAA+V + A A+ ++ G
Sbjct: 51 GDAVLELVVSEYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
H E + + FE+ +GAL+LD G + + V++ K +E RF Y +
Sbjct: 111 HAWERDSLLCDIFESFVGALYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYL 170
Query: 212 EPDGD 216
+ DGD
Sbjct: 171 QRDGD 175
>sp|A7H186|RNC_CAMC5 Ribonuclease 3 OS=Campylobacter curvus (strain 525.92) GN=rnc PE=3
SV=1
Length = 223
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 129/234 (55%), Gaps = 22/234 (9%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L+ L+ G F + +LL T +S T L SN+RLEFLGD V+ LI +YL+
Sbjct: 1 MKDLENLQKLLGYEFENTKLLNEALTHKS---TKLPY-SNERLEFLGDAVMDLIVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----E 341
F + +EG +S LR++LVN ++ + + + + F ++ + + +++A LL E
Sbjct: 57 KKFSKTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFE 116
Query: 342 AFLGAMYIDKGMEACEQFC----KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
A +GA+Y++ G++ + ++C +P++ + L +++ ++ Q L
Sbjct: 117 AVMGAVYLEAGLDKVREIAVRLLEIC-YPKIDFSHLVKDYKTALQEITQASL-------- 167
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
PIY+++ GP + + + +A+ ++ +++A NS ++A+ AAK+AL+K
Sbjct: 168 -GTTPIYELVRSFGPDHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEK 220
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I +LF F EG ++ RAA+V + A++A+ + + +F+ +
Sbjct: 43 GDAVMDLIVGEYLFKKFSKTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
E +++ FEA+MGA++L+ G+D ++ +L
Sbjct: 103 GGREKASLLSDAFEAVMGAVYLEAGLDKVREIAVRLL 139
>sp|Q03FX0|RNC_PEDPA Ribonuclease 3 OS=Pediococcus pentosaceus (strain ATCC 25745 /
183-1w) GN=rnc PE=3 SV=1
Length = 232
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 13/217 (5%)
Query: 240 FNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLS 297
FN+ LL FT S + + L +R+EFLGD VLQLI S+YL+ +PE +G L+
Sbjct: 17 FNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVSEYLFKRYPEMPQGKLT 76
Query: 298 LLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAFLGAMYIDKGM 353
LR+++V + S + + + + + R+ D+ E+F+GA+Y+D+G
Sbjct: 77 RLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLCDIFESFIGALYLDQGR 136
Query: 354 EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPT 413
A E+F ++ FP+L + D KS+LQ+ G+ +I Y+++ GP
Sbjct: 137 AAVERFVRIVIFPKLDEGKFDH-IIDHKSELQELLQK-----NGDVEID-YELVSEEGPE 189
Query: 414 NSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
N +TV+V +++LA TG+S + AE NAA ALQ
Sbjct: 190 NDLIFTVSVTADHKKLATGTGHSKKVAEQNAANQALQ 226
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P++ +G L RAA+V + AK + ++ G +
Sbjct: 51 GDAVLQLIVSEYLFKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRF 197
+ + + FE+ +GAL+LD G ++ V++ K +E +F
Sbjct: 111 GARQRSSLLCDIFESFIGALYLDQGRAAVERFVRIVIFPKLDEGKF 156
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F ++ LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFKNVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ K
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINK 225
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>sp|B9DRH1|RNC_STRU0 Ribonuclease 3 OS=Streptococcus uberis (strain ATCC BAA-854 /
0140J) GN=rnc PE=3 SV=1
Length = 230
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 116/236 (49%), Gaps = 22/236 (9%)
Query: 226 LKQLQYLEYSSGVI-FNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLIT 280
+K L+ L SS I F LL FT S Y N L + N+RLEFLGD VLQLI
Sbjct: 1 MKNLEALLKSSFAIEFEDKTLLETAFTHTS--YANEHRLLNISHNERLEFLGDAVLQLII 58
Query: 281 SDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR---- 336
S+YL+ +P EG LS RS +V R +S+ F I K + K R
Sbjct: 59 SEYLFKKYPHKAEGELSKQRSMIV--REESLASFSRHCAFEPYIKLGKGEEKSGGRNRDT 116
Query: 337 --ADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTL 394
DL EAFLGA+ +DKG+E +F P+++ ++ ND K+ LQ+ L
Sbjct: 117 ILGDLFEAFLGALLLDKGVEEVRRFLNQVMIPQVEKGNF-EKVNDYKTSLQEI------L 169
Query: 395 DGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
I YKVI GP +++ + V V L+K G S + AE NAA+ AL+
Sbjct: 170 QAKGDTIIDYKVINESGPAHAKQFEVVVLANQVELSKGIGRSKKLAEQNAAENALK 225
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ Q I S +LF +P EG L+ R+ IV+ + LA ++ E ++ G +
Sbjct: 50 GDAVLQLIISEYLFKKYPHKAEGELSKQRSMIVREESLASFSRHCAFEPYIKLGKGEEKS 109
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + FEA +GAL LD G++ + + V+
Sbjct: 110 GGRNRDTILGDLFEAFLGALLLDKGVEEVRRFLNQVM 146
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTN----LTLGSNQRLEFLGDTVLQLITSDY 283
+ + L+ G+ F + +LL + FT S Y N N+RLEFLGD VL+L S Y
Sbjct: 17 KFKELQKKIGIFFTNEKLLIQAFTHSS--YVNEHRRRPHEDNERLEFLGDAVLELTVSQY 74
Query: 284 LYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------A 337
L+ FP EG L+ LR+++V + N + F ++ K + R A
Sbjct: 75 LFKKFPHMSEGELTKLRAAIVCEPSLVKFAN--ALSFGELVLLGKGEELTGGRTRPALLA 132
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ EAF+GA+Y+D+GM+A QF FP++ + D KS+LQ+ DG
Sbjct: 133 DVFEAFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVM-DFKSQLQELV----QRDG- 186
Query: 398 EPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457
+ Y ++E GP +++ + V + L G S ++AE +AA++ALQK +I
Sbjct: 187 -IGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKLKTIGK 245
Query: 458 Q 458
+
Sbjct: 246 E 246
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP + EG L RAAIV L A + + +L G +L
Sbjct: 63 GDAVLELTVSQYLFKKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT 122
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQE 210
+A+ FEA +GAL+LD G+D Q ++ K +E F M + LQE
Sbjct: 123 GGRTRPALLADVFEAFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQ-LQE 180
>sp|Q4FLS9|RNC_PELUB Ribonuclease 3 OS=Pelagibacter ubique (strain HTCC1062) GN=rnc PE=3
SV=1
Length = 222
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLL 299
F+ ++ + T +S N +N+++EFLGD VL LI + L +P+ EG L
Sbjct: 16 FSDQKIFIKSLTHKSFDSIN----NNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKK 71
Query: 300 RSSLVNNRTQSVVCNDIGMPFFANIINP---KVDLKMKDRADLLEAFLGAMYIDKGMEAC 356
+SLVN + + I + + ++NP K++++ K AD LEA +GA+Y+DKG+
Sbjct: 72 FASLVNKKKCLEIAKKIELEKYILVLNPKNKKIEIEDKIVADCLEALIGAIYLDKGLNFT 131
Query: 357 EQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSR 416
E+F + + ++ Q D K+KLQ+ L + + +PIYK+I + GP +
Sbjct: 132 ERFILNLWSEHITASVITQ--IDAKTKLQEYSLKIFKV------LPIYKLISNTGPRHKP 183
Query: 417 SYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
+ VAV KN + A G S + AE NAA + LQ
Sbjct: 184 LFKVAVKLKNTKFFTAEGTSKKDAEQNAASLCLQ 217
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I + L ++PD +EG L A++V + +AK+I LE ++L + +
Sbjct: 44 GDRVLGLIIAKKLLELYPDEKEGVLDKKFASLVNKKKCLEIAKKIELEKYILVLNPKNKK 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQ 183
E+E K +A+C EAL+GA++LD G++ ++
Sbjct: 104 IEIEDK-IVADCLEALIGAIYLDKGLNFTER 133
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F ++ LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFQNVELLQQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ +F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVKFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY 190
+A+ FE+ +GAL+LD GID + V++
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGIDKVVKFLERVIF 146
>sp|Q6ANV0|RNC_DESPS Ribonuclease 3 OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnc PE=3 SV=1
Length = 241
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 11/221 (4%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLG-SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298
F +RLL + S + G +N+RLEF+GD VL L+ + LY FPE EG L+
Sbjct: 27 FIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNALYRRFPEMREGELTR 86
Query: 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLL----EAFLGAMYIDKGME 354
LR++LVN + + I + +F + + + K ++++ +L EA +GA++ D G +
Sbjct: 87 LRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCAYEAVIGAIFQDGGYD 146
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
A + F P + + D KS+LQ+ L + P Y++ GP++
Sbjct: 147 AVAALVERFFLPVIDRRKEDLLLADAKSRLQEI------LQEKHNEGPSYRLDNEEGPSH 200
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455
+ +T++V F++E L S ++AE A +A++K S+
Sbjct: 201 KKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKKIESM 241
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + L+ FP++ EG L RAA+V HLA +A++I L F+ G D
Sbjct: 60 GDAVLDLVVGNALYRRFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNS 119
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
E ++ +EA++GA+F DGG D
Sbjct: 120 KGREKSSILSCAYEAVIGAIFQDGGYDA 147
>sp|A0RRM7|RNC_CAMFF Ribonuclease 3 OS=Campylobacter fetus subsp. fetus (strain 82-40)
GN=rnc PE=3 SV=1
Length = 223
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 14/229 (6%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+ +L LE G F + LL T +SM + +N+RLEFLGD VL LI +YL+
Sbjct: 1 MDKLNRLEEHLGYKFKNKTLLKEALTHKSMKSS----VNNERLEFLGDAVLDLIVGEYLF 56
Query: 286 NHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLE 341
F + EG+LS LR++LVN ++ + + + I + F + + + +++ +D LE
Sbjct: 57 FKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDI 401
A +GA+Y++ G+EA ++ + L D K+ LQ+ +
Sbjct: 117 ALMGAIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGV------T 170
Query: 402 PIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P Y+++ GP + +S+ +AV+ ++ LA+A GNS ++AE +AA LQ
Sbjct: 171 PRYELVSSSGPDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQ 219
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ I +LF F D +EG L+ RAA+V + A ++ +I L DF+ + D
Sbjct: 43 GDAVLDLIVGEYLFFKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNN 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ +++ EALMGA++L+ G++ ++F ++L
Sbjct: 103 NGRNKPSLVSDALEALMGAIYLESGLEAVKKIFINLL 139
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNL----TLGSNQRLEFLGDTVLQLITS 281
+ Q + L+ S G F + LL + FT S Y N + N+RLEFLGD VL+L S
Sbjct: 1 MNQWEELQESVGFDFKDVELLKQAFTHSS--YVNEHRRENVKDNERLEFLGDAVLELTVS 58
Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----A 337
DYL+N +P+ EGH++ +R+++V + + + + + + R A
Sbjct: 59 DYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118
Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGG 397
D+ E+F+GA+Y+D G++ F + FP++ Q D K++LQ+ R
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTV-DYKTQLQEIVQRDR----- 172
Query: 398 EPDIPI-YKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
D+ I Y ++ GP +++++ V + L K +G + +QAE +AA+ A+ +
Sbjct: 173 --DVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQ 225
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF+ +PD+ EG + RAAIV L A+ + ++ G +
Sbjct: 49 GDAVLELTVSDYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKA 108
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+A+ FE+ +GAL+LD GID
Sbjct: 109 GGRTRPALLADVFESFIGALYLDNGID 135
>sp|Q2SL32|RNC_HAHCH Ribonuclease 3 OS=Hahella chejuensis (strain KCTC 2396) GN=rnc PE=3
SV=1
Length = 226
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 16/227 (7%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+L+ L+ + G F LL T RS G N N+RLEFLGD+VL I +DYL+
Sbjct: 4 KLERLQRALGYTFKEPALLTLALTHRSFGGRN-----NERLEFLGDSVLNFIIADYLFGR 58
Query: 288 FPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAF 343
F E EG LS LR+ +V T + + + + + + + ++ R AD LE+
Sbjct: 59 FEEAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALESI 118
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPI 403
+GA+Y+D G E C F RLQ L D K++LQ+ L + ++P
Sbjct: 119 IGAIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEY------LQARQLNLPR 172
Query: 404 YKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
Y+VI G +++++ V + TG+S + AE AAK AL
Sbjct: 173 YEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQAL 219
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ FI + +LF F + EG L+ RA +V+ LA +A+ L +++ G
Sbjct: 43 GDSVLNFIIADYLFGRFEEAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV-ADQV---FSSVL--------YKDNEVRFKQW 200
+ +A+ E+++GA++LD G +V AD+V F + L KD++ R +++
Sbjct: 103 GGFRRESILADALESIIGAIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEY 162
Query: 201 MYYPQHPL 208
+ Q L
Sbjct: 163 LQARQLNL 170
>sp|Q0AYW0|RNC_SYNWW Ribonuclease 3 OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=rnc PE=3 SV=1
Length = 233
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 29/219 (13%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLV 304
L+ T S T+ +NQRLEFLGD VL L+ ++YLYNH+ EG L+ +R+
Sbjct: 24 LITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKIRA--- 80
Query: 305 NNRTQSVVCNDIGMPFFANIIN----------PKVDLKMKDR---ADLLEAFLGAMYIDK 351
VVC D + FA IN ++ K + AD +EA +GA+Y+D+
Sbjct: 81 -----KVVCED-ALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQ 134
Query: 352 GMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG 411
G+E ++F + L + ++ D KSKLQ+ + + + Y +IE G
Sbjct: 135 GLETVQRFI-IRQLEELISETASGDYYDYKSKLQEL------VQARDKENVSYAIIEESG 187
Query: 412 PTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
P +++ + VY++ + LA G S ++AE AA+ LQ
Sbjct: 188 PAHAKVFVAGVYYREQLLATGEGKSKKEAEQKAAQKVLQ 226
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + + +L++ + EG L RA +V LA A+ I L ++L G ++
Sbjct: 51 GDAVLNLVVAEYLYNHYGRKAEGELTKIRAKVVCEDALAIFARNINLGQYLLLGRGEEMS 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDV 180
+ K +A+ EA++GA++LD G++
Sbjct: 111 GGRKRKSILADAVEAVIGAIYLDQGLET 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,770,723
Number of Sequences: 539616
Number of extensions: 8414044
Number of successful extensions: 25543
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 23193
Number of HSP's gapped (non-prelim): 1247
length of query: 550
length of database: 191,569,459
effective HSP length: 123
effective length of query: 427
effective length of database: 125,196,691
effective search space: 53458987057
effective search space used: 53458987057
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)