Query psy3362
Match_columns 550
No_of_seqs 404 out of 2444
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 23:05:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 100.0 3E-51 1E-55 461.3 15.4 270 85-369 333-753 (756)
2 2nug_A Ribonuclease III, RNAse 100.0 5.1E-48 1.7E-52 378.9 21.7 214 228-454 3-219 (221)
3 3n3w_A Ribonuclease III; nucle 100.0 1E-49 3.5E-54 396.7 9.6 217 228-454 27-247 (248)
4 1o0w_A Ribonuclease III, RNAse 100.0 4.6E-48 1.6E-52 386.3 16.1 225 224-454 16-249 (252)
5 2a11_A Ribonuclease III, RNAse 100.0 1.8E-47 6.3E-52 379.9 7.2 219 229-455 7-232 (242)
6 3c4b_A Endoribonuclease dicer; 100.0 1.3E-43 4.5E-48 356.9 20.0 212 227-453 13-262 (265)
7 3rv0_A K. polysporus DCR1; RNA 100.0 6.3E-44 2.2E-48 368.5 9.8 216 230-455 86-321 (341)
8 3o2r_A Ribonuclease III; struc 100.0 9.4E-34 3.2E-38 265.5 10.0 141 226-370 25-169 (170)
9 3rv1_A K. polysporus DCR1; RNA 100.0 7E-31 2.4E-35 258.6 9.4 142 230-371 86-243 (246)
10 2qvw_A GLP_546_48378_50642; di 99.9 2.8E-27 9.6E-32 266.6 3.1 157 263-456 332-499 (756)
11 3o2r_A Ribonuclease III; struc 99.9 9.6E-25 3.3E-29 204.4 7.0 121 71-191 42-165 (170)
12 3n3w_A Ribonuclease III; nucle 99.9 4.8E-24 1.6E-28 211.8 7.5 143 71-213 42-188 (248)
13 2a11_A Ribonuclease III, RNAse 99.9 6.4E-23 2.2E-27 203.3 7.5 143 71-213 20-173 (242)
14 1o0w_A Ribonuclease III, RNAse 99.9 6.8E-23 2.3E-27 204.2 3.5 109 85-193 61-169 (252)
15 3c4b_A Endoribonuclease dicer; 99.9 3.1E-22 1.1E-26 201.0 6.5 122 71-192 29-190 (265)
16 3rv1_A K. polysporus DCR1; RNA 99.8 4.3E-22 1.5E-26 196.1 6.7 124 71-194 100-241 (246)
17 2nug_A Ribonuclease III, RNAse 99.8 5E-22 1.7E-26 194.2 5.7 116 72-193 19-139 (221)
18 3rv0_A K. polysporus DCR1; RNA 99.8 1.5E-21 5.2E-26 201.5 9.4 143 71-213 100-265 (341)
19 1u61_A Hypothetical protein; s 99.8 1.5E-19 5.1E-24 162.2 8.9 107 82-189 8-126 (138)
20 1u61_A Hypothetical protein; s 99.8 9.8E-19 3.4E-23 156.9 9.8 102 262-364 9-126 (138)
21 2gsl_A Hypothetical protein; a 99.7 1E-17 3.5E-22 150.0 6.4 107 82-190 11-127 (137)
22 2gsl_A Hypothetical protein; a 99.7 4.7E-17 1.6E-21 145.7 6.4 104 262-367 12-129 (137)
23 3llh_A RISC-loading complex su 99.6 4.1E-16 1.4E-20 130.5 9.3 82 366-455 2-83 (90)
24 2khx_A Ribonuclease 3; drosha, 99.6 3.5E-16 1.2E-20 129.4 8.0 77 378-455 1-77 (85)
25 3adj_A F21M12.9 protein; HYL1, 99.6 3.6E-16 1.2E-20 126.8 7.9 71 378-454 4-74 (76)
26 3adl_A RISC-loading complex su 99.6 9E-16 3.1E-20 127.7 10.1 73 376-455 13-85 (88)
27 1di2_A XLRBPA, double stranded 99.6 5.2E-16 1.8E-20 123.5 8.3 67 380-453 2-68 (69)
28 3adg_A F21M12.9 protein; HYL1, 99.6 1.1E-15 3.8E-20 122.9 8.7 69 378-453 3-72 (73)
29 2cpn_A TAR RNA-binding protein 99.6 2E-15 6.9E-20 125.9 9.6 73 375-454 13-85 (89)
30 1uhz_A Staufen (RNA binding pr 99.6 3.3E-15 1.1E-19 124.6 10.1 71 377-454 5-75 (89)
31 2dix_A Interferon-inducible do 99.6 2.3E-15 7.9E-20 124.3 8.6 71 377-455 7-77 (84)
32 1ekz_A DSRBDIII, maternal effe 99.6 6.1E-16 2.1E-20 125.4 4.4 71 376-454 5-75 (76)
33 2l2n_A Hyponastic leave 1; DSR 99.6 4.4E-15 1.5E-19 127.3 8.2 83 366-455 5-88 (103)
34 2b7t_A Double-stranded RNA-spe 99.6 9.4E-15 3.2E-19 117.5 8.6 69 377-454 3-71 (73)
35 1t4n_A Ribonuclease III; DSRBD 99.6 3.1E-15 1.1E-19 124.9 6.0 71 377-455 5-76 (94)
36 1x49_A Interferon-induced, dou 99.5 5.8E-15 2E-19 125.1 6.5 73 376-455 12-84 (97)
37 1x47_A DGCR8 protein; structur 99.5 1.9E-14 6.6E-19 122.1 8.9 71 376-454 14-84 (98)
38 2dmy_A Spermatid perinuclear R 99.5 2.5E-14 8.4E-19 121.3 9.5 71 375-454 13-83 (97)
39 1whq_A RNA helicase A; double- 99.5 1.2E-14 4E-19 123.6 7.2 71 377-455 5-76 (99)
40 2l33_A Interleukin enhancer-bi 99.5 3.9E-14 1.3E-18 118.3 9.5 74 377-459 13-86 (91)
41 1t4o_A Ribonuclease III; RNT1P 99.5 1.7E-14 5.8E-19 124.6 7.1 71 377-455 7-78 (117)
42 1x48_A Interferon-induced, dou 99.5 6.5E-14 2.2E-18 116.5 8.9 70 377-455 5-75 (88)
43 2ljh_A Double-stranded RNA-spe 99.5 1.3E-13 4.5E-18 119.6 8.6 68 376-455 35-102 (114)
44 1uil_A Double-stranded RNA-bin 99.4 1.1E-13 3.8E-18 120.4 7.7 70 378-455 26-100 (113)
45 2b7v_A Double-stranded RNA-spe 99.4 1E-13 3.4E-18 110.8 6.7 66 377-454 3-68 (71)
46 3p1x_A Interleukin enhancer-bi 99.4 7.2E-13 2.5E-17 106.9 9.8 57 400-457 18-74 (75)
47 1whn_A Hypothetical protein ri 99.4 4.7E-13 1.6E-17 118.7 8.1 71 376-455 24-95 (128)
48 1qu6_A Protein kinase PKR; dsR 99.3 1.7E-12 5.9E-17 122.4 5.6 73 376-455 11-83 (179)
49 2yt4_A Protein DGCR8; DSRBD, R 99.2 1.5E-11 5.3E-16 120.4 9.5 73 375-455 19-91 (232)
50 2l3j_A Double-stranded RNA-spe 99.0 8.2E-10 2.8E-14 108.5 8.7 68 376-455 159-226 (236)
51 2l3j_A Double-stranded RNA-spe 98.9 1.7E-09 5.8E-14 106.2 9.5 69 378-455 4-72 (236)
52 1qu6_A Protein kinase PKR; dsR 98.9 1.8E-09 6.3E-14 101.6 6.7 71 376-454 102-172 (179)
53 2yt4_A Protein DGCR8; DSRBD, R 98.8 3.6E-09 1.2E-13 103.6 6.5 72 376-457 128-201 (232)
54 2db2_A KIAA0890 protein; DSRM 94.4 0.028 9.6E-07 47.3 3.7 74 377-455 16-90 (119)
55 2kou_A Dicer-like protein 4; A 93.8 0.19 6.6E-06 42.2 7.7 75 378-457 4-83 (102)
56 1ztd_A Hypothetical protein PF 85.0 3.7 0.00013 34.4 8.0 82 89-190 15-100 (133)
57 3htx_A HEN1; HEN1, small RNA m 84.4 1.3 4.4E-05 50.5 6.6 68 378-455 17-96 (950)
58 1ztd_A Hypothetical protein PF 75.7 8.5 0.00029 32.2 7.1 89 264-368 11-103 (133)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=3e-51 Score=461.32 Aligned_cols=270 Identities=23% Similarity=0.319 Sum_probs=227.5
Q ss_pred hhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceecccCCcccchhhhhhhhHHH
Q psy3362 85 RMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164 (550)
Q Consensus 85 ~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~~~~~~~~~~~~k~lAD~ 164 (550)
+|+||||+||+||+++++++||.+||+.+||+||.+|+.+|||++|+++|+++||++||+.++++. ..+|++||+
T Consensus 333 nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~ilaD~ 407 (756)
T 2qvw_A 333 VFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSKTWADM 407 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-----CcccHHHhH
Confidence 899999999999999999999999999999999999999999999999999999999999998764 347999999
Q ss_pred HHHHhhhHhhc-CChhHHHHHhhhccccChhhh-----------------------------------------------
Q psy3362 165 FEALMGALFLD-GGIDVADQVFSSVLYKDNEVR----------------------------------------------- 196 (550)
Q Consensus 165 ~EAliGA~yld-~G~~~~~~~l~~l~~~~~~~~----------------------------------------------- 196 (550)
|||+|||+|+| +|++.+++|+..++.+...+.
T Consensus 408 ~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~a 487 (756)
T 2qvw_A 408 YEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRV 487 (756)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSHH
T ss_pred HHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccchhhHH
Confidence 99999999999 999999999988765432110
Q ss_pred ---------------hhhhc------------cCCCCC----------------------C-------------------
Q psy3362 197 ---------------FKQWM------------YYPQHP----------------------L------------------- 208 (550)
Q Consensus 197 ---------------~~~~~------------~~p~~~----------------------l------------------- 208 (550)
+..|. ..|... +
T Consensus 488 a~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~~ 567 (756)
T 2qvw_A 488 STMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVLY 567 (756)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECCT
T ss_pred HHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceeccccccccccccccccccccCCchhh
Confidence 00121 001000 0
Q ss_pred ----CcCCCCCcccc--ccchh-hHHHHHHHHHHhCCccCC--------------------------HHHHHHhhccCCC
Q psy3362 209 ----QEQEPDGDRQW--VEQSP-LLKQLQYLEYSSGVIFNH--------------------------IRLLARVFTTRSM 255 (550)
Q Consensus 209 ----q~~~P~~~r~~--~~~~~-~~~~l~~le~~lgy~F~~--------------------------~~LL~~AlTh~S~ 255 (550)
+.+.|....++ .|..+ ....+..+|++|||+|+| +.||.+||||+|
T Consensus 568 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S- 646 (756)
T 2qvw_A 568 IYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV- 646 (756)
T ss_dssp TTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG-
T ss_pred hhcccccCccccccccccccchhhhhHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc-
Confidence 00001000000 01111 234589999999999999 899999999999
Q ss_pred CCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchhHHHHHHHHcC--ccchhhccCCccccch
Q psy3362 256 GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG--MPFFANIINPKVDLKM 333 (550)
Q Consensus 256 ~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~ia~~~g--L~~~i~~~~~~~~~~~ 333 (550)
|||||||||+||+++|++|||.+||++++|.|+.+|+.+|+|++|+.+|+++| |+++++.++++...++
T Consensus 647 ---------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~~~~ 717 (756)
T 2qvw_A 647 ---------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQPDS 717 (756)
T ss_dssp ---------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCCTTC
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhhcCCc
Confidence 89999999999999999999999999999999999999999999999999999 9999999988777889
Q ss_pred hhhhhHHHHHHhcccccCCcchhhhHHHhhcccchh
Q psy3362 334 KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQ 369 (550)
Q Consensus 334 k~laD~fEAliGAIylD~G~~~~~~fi~~~~~p~l~ 369 (550)
|++||+|||+|||||+|+|++.+++|+.+++.|.++
T Consensus 718 kilaD~~EAliGAiylD~G~~~a~~~v~~~~~~~l~ 753 (756)
T 2qvw_A 718 KVYGDTFEAILAAILLACGEEAAGAFVREHVLPQVV 753 (756)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTGGGCC
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999988764
No 2
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=5.1e-48 Score=378.90 Aligned_cols=214 Identities=25% Similarity=0.344 Sum_probs=197.0
Q ss_pred HHHHHHHHhCCccCCHHHHHHhhccCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchh
Q psy3362 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307 (550)
Q Consensus 228 ~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~ 307 (550)
.+.+|+++|||+|+|+.||.+||||+|+..+ .+|||||||||+||+++|++|||.+||+.++|.|+.+|+.+|+++
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~----~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~ 78 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK----EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEE 78 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS----SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCC----CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHH
Confidence 3678999999999999999999999999754 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccchhhccCCccccchhhhhhHHHHHHhcccccCCcch--hhhHHHhhcccchh-hhhhccccCCccHHH
Q psy3362 308 TQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEA--CEQFCKVCFFPRLQ-YFILNQEWNDPKSKL 384 (550)
Q Consensus 308 ~La~ia~~~gL~~~i~~~~~~~~~~~k~laD~fEAliGAIylD~G~~~--~~~fi~~~~~p~l~-~~~~~~~~~~Pk~~L 384 (550)
+|+.+|+++||+++++.++++.. +++++|+|||+|||||+|+|++. +++|+.+++.|.+. .........|||+.|
T Consensus 79 ~la~~a~~l~l~~~l~~~~~~~~--~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~pks~L 156 (221)
T 2nug_A 79 FFNLLAQKLELHKFIRIKRGKIN--ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTIL 156 (221)
T ss_dssp HHHHHHHTTTGGGTCBSCTTCCC--HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHH
T ss_pred HHHHHHHHcChHHhhccCCCccc--chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhhhccccccCHHHHH
Confidence 99999999999999999876543 99999999999999999999999 99999999999887 554444468999999
Q ss_pred HHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 385 QQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 385 qe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
|||||+. +...|+|++++++||+|.+.|+|+|+++|+ +++|.|+|||+||+.||+.||+.|++
T Consensus 157 qE~~q~~------~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 157 QEITQKR------WKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp HHHHHHH------HSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHc------CCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhhc
Confidence 9999984 245689999999999999999999999999 99999999999999999999999863
No 3
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1e-49 Score=396.67 Aligned_cols=217 Identities=29% Similarity=0.418 Sum_probs=130.5
Q ss_pred HHHHHHHHhCCccCCHHHHHHhhccCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchh
Q psy3362 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNR 307 (550)
Q Consensus 228 ~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~ 307 (550)
++.+|+++|||+|+|++||.+||||+||..+ .+|||||||||+||+++|+++||.+||+.++|.|+.+|+.+|||+
T Consensus 27 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~----~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~ 102 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS----YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEK 102 (248)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHTBCTTSBTT----BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC----CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHH
Confidence 4789999999999999999999999999854 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCccchhhccCCc----cccchhhhhhHHHHHHhcccccCCcchhhhHHHhhcccchhhhhhccccCCccHH
Q psy3362 308 TQSVVCNDIGMPFFANIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSK 383 (550)
Q Consensus 308 ~La~ia~~~gL~~~i~~~~~~----~~~~~k~laD~fEAliGAIylD~G~~~~~~fi~~~~~p~l~~~~~~~~~~~Pk~~ 383 (550)
+|+.+|.++||+++++.++++ ...++++++|+|||+|||||+|+|++.+++|+.+++.|.++.........|||+.
T Consensus 103 ~La~~a~~lgL~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~~~~~~dpks~ 182 (248)
T 3n3w_A 103 SFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTK 182 (248)
T ss_dssp HHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHcCcHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhccccccCHHHH
Confidence 999999999999999987653 4567899999999999999999999999999999999998876655567899999
Q ss_pred HHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 384 LQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 384 Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
||||||+. +...|+|++++++||+|.+.|+|+|+++|+.+++|.|+|||+||+.||+.||++|+.
T Consensus 183 LqE~~q~~------~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 183 LQEITQGK------IGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHc------CCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 99999973 446789999989999999999999999999999999999999999999999999875
No 4
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=4.6e-48 Score=386.29 Aligned_cols=225 Identities=25% Similarity=0.362 Sum_probs=203.2
Q ss_pred hhHHHHHHHHHHhCCccCCHHHHHHhhccCCCCCCCCCCC-----CchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhH
Q psy3362 224 PLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-----SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSL 298 (550)
Q Consensus 224 ~~~~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~~~~~~-----~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~ 298 (550)
.....+.+|+++|||+|+|+.||.+||||+||..+..... +|||||||||+||+++|++|||.+||+.++|.|+.
T Consensus 16 ~~~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~ 95 (252)
T 1o0w_A 16 SERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLAR 95 (252)
T ss_dssp HHHHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3567789999999999999999999999999864321123 89999999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHcCccchhhccCCc----cccchhhhhhHHHHHHhcccccCCcchhhhHHHhhcccchhhhhhc
Q psy3362 299 LRSSLVNNRTQSVVCNDIGMPFFANIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILN 374 (550)
Q Consensus 299 lr~~lvsn~~La~ia~~~gL~~~i~~~~~~----~~~~~k~laD~fEAliGAIylD~G~~~~~~fi~~~~~p~l~~~~~~ 374 (550)
+|+.+|++++|+.+|.++||+++++.++++ ....+++++|+|||+|||||+|+|++.+++|+.+++.|.+......
T Consensus 96 ~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~ 175 (252)
T 1o0w_A 96 VKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKG 175 (252)
T ss_dssp HHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCHHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999987643 3567899999999999999999999999999999999998876654
Q ss_pred cccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 375 QEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 375 ~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
....|||+.||||||+. +...|+|++++++||+|.+.|+|+|+++|+.+++|.|+|||+||+.||+.||+.|..
T Consensus 176 ~~~~dpkt~LqE~~q~~------~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 176 EMLFDYKTALQEIVQSE------HKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp CCCSCHHHHHHHHHHHH------HSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHHHc------CCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 45679999999999984 235799999999999999999999999999999999999999999999999999863
No 5
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.8e-47 Score=379.94 Aligned_cols=219 Identities=31% Similarity=0.382 Sum_probs=132.0
Q ss_pred HHHHHHHhCCccCCHHHHHHhhccCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchhH
Q psy3362 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRT 308 (550)
Q Consensus 229 l~~le~~lgy~F~~~~LL~~AlTh~S~~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~ 308 (550)
+.+|+++|||+| |+.||.+||||+||..++....+|||||||||+||+++|++|||.+||+.++|.|+.+|+.+|+|++
T Consensus 7 l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~ 85 (242)
T 2a11_A 7 RQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQA 85 (242)
T ss_dssp CHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHH
Confidence 567999999999 9999999999999975433457999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc---CccchhhccCCc----cccchhhhhhHHHHHHhcccccCCcchhhhHHHhhcccchhhhhhccccCCcc
Q psy3362 309 QSVVCNDI---GMPFFANIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPK 381 (550)
Q Consensus 309 La~ia~~~---gL~~~i~~~~~~----~~~~~k~laD~fEAliGAIylD~G~~~~~~fi~~~~~p~l~~~~~~~~~~~Pk 381 (550)
|+.+|.++ ||+++++.++++ ....+++++|+|||+|||||+|+|++.+++|+.+++.|++..........|||
T Consensus 86 la~~a~~l~~~gL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~dpk 165 (242)
T 2a11_A 86 LADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWK 165 (242)
T ss_dssp HHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC--------
T ss_pred HHHHHHHhhhhChHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccccCChH
Confidence 99999999 999999987653 34578999999999999999999999999999999999887765444567999
Q ss_pred HHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 382 SKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 382 ~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
+.||||||+. +...|+|++++ +||+|.+.|+|+|+++|+.+++|.|+|||+||+.||+.||+.|.+.
T Consensus 166 t~Lqe~~q~~------~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~ 232 (242)
T 2a11_A 166 TSLQELTAAR------GLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVL 232 (242)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHh------CCCCCeEEEec-cCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999973 34579999987 8999999999999999999999999999999999999999999754
No 6
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=1.3e-43 Score=356.86 Aligned_cols=212 Identities=26% Similarity=0.334 Sum_probs=178.6
Q ss_pred HHHHHHHHHhCCccCCHHHHHHhhccCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhch
Q psy3362 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNN 306 (550)
Q Consensus 227 ~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn 306 (550)
..+.+||++|||+|+|+.||.+||||+||..+. ...||||||||||+||+++|++|||.+||++++|.|+.+|+.+|||
T Consensus 13 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~-~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~ 91 (265)
T 3c4b_A 13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNT-ITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 91 (265)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCC-SSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCccCCHHHHHHHhcCcCcCCCC-CCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999999999997543 3469999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCccchhhccCC------------------------------------ccccchhhhhhHHHHHHhccccc
Q psy3362 307 RTQSVVCNDIGMPFFANIINP------------------------------------KVDLKMKDRADLLEAFLGAMYID 350 (550)
Q Consensus 307 ~~La~ia~~~gL~~~i~~~~~------------------------------------~~~~~~k~laD~fEAliGAIylD 350 (550)
++|+.+|+++||+++++..++ .....+++++|+|||+|||||+|
T Consensus 92 ~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD 171 (265)
T 3c4b_A 92 TIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMD 171 (265)
T ss_dssp HHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeee
Confidence 999999999999999873210 12356899999999999999999
Q ss_pred CCc--chhhhHHHhhcccchhhhhhccccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEE
Q psy3362 351 KGM--EACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNER 428 (550)
Q Consensus 351 ~G~--~~~~~fi~~~~~p~l~~~~~~~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~ 428 (550)
+|+ +.+++|+.+++.|.++.... .+|++.++++.+... ..+.|. ..+++|.+.|+|+|+++|+.
T Consensus 172 ~G~~~~~~~~~i~~~~~~~i~~~~~----~~~k~~l~el~~~~~-------~~~~~~---~~~~~~~~~f~v~v~v~~~~ 237 (265)
T 3c4b_A 172 SGMSLEVVWQVYYPMMQPLIEKFSA----NVPRSPVRELLEMEP-------ETAKFS---PAERTYDGKVRVTVEVVGKG 237 (265)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHCT-------TTEEEC---CCEECTTSCEEEEEEETTTE
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHhh----cCCCCHHHHHHHhcc-------CCceee---eccccCCCcEEEEEEEecce
Confidence 999 77999999999898776432 245555555554310 112232 23446788999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhCc
Q psy3362 429 LAKATGNSIQQAEMNAAKVALQKCP 453 (550)
Q Consensus 429 lg~G~G~SkK~Ae~~AA~~AL~~L~ 453 (550)
+++|.|+|||+||+.||+.||++|+
T Consensus 238 ~~~G~G~SkK~Aeq~AA~~AL~~l~ 262 (265)
T 3c4b_A 238 KFKGVGRSYRIAKSAAARRALRSLK 262 (265)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999885
No 7
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=6.3e-44 Score=368.54 Aligned_cols=216 Identities=25% Similarity=0.260 Sum_probs=127.5
Q ss_pred HHHHHHhCCc-cCCHHHHHHhhccCCCCCCCC-------CCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHH
Q psy3362 230 QYLEYSSGVI-FNHIRLLARVFTTRSMGYTNL-------TLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRS 301 (550)
Q Consensus 230 ~~le~~lgy~-F~~~~LL~~AlTh~S~~~~~~-------~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~ 301 (550)
..+|++|||+ |+|++||.+||||+||..+.. ...+|||||||||+||+++++++||.+||++++|.|+.+|+
T Consensus 86 ~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~ 165 (341)
T 3rv0_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (341)
T ss_dssp CTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3468999999 999999999999999976431 24689999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHcCccchhhccCCc-----cccchhhhhhHHHHHHhcccccC---CcchhhhHHHhhcccchhhhhh
Q psy3362 302 SLVNNRTQSVVCNDIGMPFFANIINPK-----VDLKMKDRADLLEAFLGAMYIDK---GMEACEQFCKVCFFPRLQYFIL 373 (550)
Q Consensus 302 ~lvsn~~La~ia~~~gL~~~i~~~~~~-----~~~~~k~laD~fEAliGAIylD~---G~~~~~~fi~~~~~p~l~~~~~ 373 (550)
.+|+|.+|+.+|+++||+++++.+.+. ....++++||+|||+|||||+|+ |++.+++|+.+++.|.+.+...
T Consensus 166 ~lVs~~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~ 245 (341)
T 3rv0_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQ 245 (341)
T ss_dssp HHHSHHHHHHHHHHTTTTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGG
T ss_pred HHhCHHHHHHHHHHcCcHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999964322 12468999999999999999998 9999999999999998876543
Q ss_pred c----cccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHH
Q psy3362 374 N----QEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449 (550)
Q Consensus 374 ~----~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL 449 (550)
. ....|||+.||||||+.+ ....|+|+++++.|| |+|+|+++|+.+|+|.|+|||+||+.||+.||
T Consensus 246 ~~~~~~~~~d~Kt~LqE~~Q~~~-----~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL 315 (341)
T 3rv0_A 246 MVIKEPLNKNAKNELAELLQINK-----LGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVL 315 (341)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhccccccCHHHHHHHHHHHcC-----CCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHH
Confidence 2 345799999999999731 123469998877665 99999999999999999999999999999999
Q ss_pred HhCccc
Q psy3362 450 QKCPSI 455 (550)
Q Consensus 450 ~~L~~~ 455 (550)
++|+.+
T Consensus 316 ~~L~~~ 321 (341)
T 3rv0_A 316 ENDELL 321 (341)
T ss_dssp ------
T ss_pred HHhhhh
Confidence 999866
No 8
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=9.4e-34 Score=265.53 Aligned_cols=141 Identities=30% Similarity=0.455 Sum_probs=130.4
Q ss_pred HHHHHHHHHHhCCccCCHHHHHHhhccCCCCCCCCCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhc
Q psy3362 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVN 305 (550)
Q Consensus 226 ~~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~~~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvs 305 (550)
..++.+||++|||+|+|+.|+.+||||+|+..+ .+|||||||||+||+++|++++|.+||+.++|.|+.+|+.+||
T Consensus 25 m~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~----~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs 100 (170)
T 3o2r_A 25 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS----YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVN 100 (170)
T ss_dssp --CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT----CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC----cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHC
Confidence 345899999999999999999999999999854 6999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCccchhhccCCc----cccchhhhhhHHHHHHhcccccCCcchhhhHHHhhcccchhh
Q psy3362 306 NRTQSVVCNDIGMPFFANIINPK----VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQY 370 (550)
Q Consensus 306 n~~La~ia~~~gL~~~i~~~~~~----~~~~~k~laD~fEAliGAIylD~G~~~~~~fi~~~~~p~l~~ 370 (550)
|++|+.+|+++||+++++.++++ ...+++++||+|||+|||||+|+|++.+++|+.+++.|.++.
T Consensus 101 ~~~La~ia~~lgL~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~~~~~~ 169 (170)
T 3o2r_A 101 EKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQ 169 (170)
T ss_dssp HHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCcHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987653 456789999999999999999999999999999999887653
No 9
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.97 E-value=7e-31 Score=258.62 Aligned_cols=142 Identities=26% Similarity=0.272 Sum_probs=120.6
Q ss_pred HHHHHHhCCc-cCCHHHHHHhhccCCCCCCC-------CCCCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHH
Q psy3362 230 QYLEYSSGVI-FNHIRLLARVFTTRSMGYTN-------LTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRS 301 (550)
Q Consensus 230 ~~le~~lgy~-F~~~~LL~~AlTh~S~~~~~-------~~~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~ 301 (550)
..+|++|||+ |+|+.||.+||||+||..+. ....+|||||||||+||++++++++|.+||+.++|.|+.+|+
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs 165 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3468999999 99999999999999997642 135699999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHcCccchhhccCCc-----cccchhhhhhHHHHHHhcccccC---CcchhhhHHHhhcccchhhh
Q psy3362 302 SLVNNRTQSVVCNDIGMPFFANIINPK-----VDLKMKDRADLLEAFLGAMYIDK---GMEACEQFCKVCFFPRLQYF 371 (550)
Q Consensus 302 ~lvsn~~La~ia~~~gL~~~i~~~~~~-----~~~~~k~laD~fEAliGAIylD~---G~~~~~~fi~~~~~p~l~~~ 371 (550)
.+|+|++|+.+|+++||+++++.+.+. ....++++||+|||+|||||+|+ |++.+++|+.+++.|.++++
T Consensus 166 ~lVsn~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L~~p~l~e~ 243 (246)
T 3rv1_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKS 243 (246)
T ss_dssp HHHSHHHHHHHHHHTTSHHHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHC-
T ss_pred HHhCHHHHHHHHHHCCcHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999964322 23468999999999999999998 48999999999999998765
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.93 E-value=2.8e-27 Score=266.56 Aligned_cols=157 Identities=26% Similarity=0.401 Sum_probs=135.3
Q ss_pred CCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchhHHHHHHHHcCccchhhccCCccccchhhhhhHHHH
Q psy3362 263 GSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEA 342 (550)
Q Consensus 263 ~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~ia~~~gL~~~i~~~~~~~~~~~k~laD~fEA 342 (550)
.||||||||||+||+++|++|||.+||+.++|.|+.+|+.+|+|++|+.+|+++||+++++.++++. .+++++||+|||
T Consensus 332 ~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-~~~~ilaD~~EA 410 (756)
T 2qvw_A 332 DVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-AKSKTWADMYEE 410 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC---CCCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-CcccHHHhHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999987654 678999999999
Q ss_pred HHhccccc-CCcchhhhHHHhhcccchhhhhhccccCCc-cHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEE
Q psy3362 343 FLGAMYID-KGMEACEQFCKVCFFPRLQYFILNQEWNDP-KSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV 420 (550)
Q Consensus 343 liGAIylD-~G~~~~~~fi~~~~~p~l~~~~~~~~~~~P-k~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v 420 (550)
+|||||+| +|++.+++|+.+++.|.+..........|| |+.||||+|.
T Consensus 411 liGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~------------------------------ 460 (756)
T 2qvw_A 411 IVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMG------------------------------ 460 (756)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTS------------------------------
T ss_pred HhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhc------------------------------
Confidence 99999999 999999999999999988775544456789 9999999864
Q ss_pred EEEECCEEEEEEEcCCHHHHH---------HHHHHHHHHhCcccC
Q psy3362 421 AVYFKNERLAKATGNSIQQAE---------MNAAKVALQKCPSIC 456 (550)
Q Consensus 421 ~V~v~g~~lg~G~G~SkK~Ae---------~~AA~~AL~~L~~~~ 456 (550)
+.++.|.+.+.+.|| .+||++||++++++.
T Consensus 461 ------~~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~ 499 (756)
T 2qvw_A 461 ------EAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIP 499 (756)
T ss_dssp ------CCCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSC
T ss_pred ------cchhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcccc
Confidence 112345566667776 689999999998763
No 11
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.90 E-value=9.6e-25 Score=204.35 Aligned_cols=121 Identities=23% Similarity=0.412 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhhh---chhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceeccc
Q psy3362 71 VGVVLFVISVIQI---YRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAH 147 (550)
Q Consensus 71 ~~~l~~~~s~~~~---~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~ 147 (550)
..++..|++++.. .+|+||||+||+||+++++++||.+||+.+||.|+.+|+.+|||++|+++|+++||++||+.++
T Consensus 42 ~~LL~~AlTH~S~~~~~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~ 121 (170)
T 3o2r_A 42 KNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSV 121 (170)
T ss_dssp HHHHHHHTBCTTSSTTCCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCH
T ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCc
Confidence 4567788887753 6899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccchhhhhhhhHHHHHHHhhhHhhcCChhHHHHHhhhcccc
Q psy3362 148 GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYK 191 (550)
Q Consensus 148 ~~~~~~~~~~~k~lAD~~EAliGA~yld~G~~~~~~~l~~l~~~ 191 (550)
++...++...+|++||+|||+|||+|+|+|++.+++|+..++.+
T Consensus 122 ~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~~ 165 (170)
T 3o2r_A 122 AEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEK 165 (170)
T ss_dssp HHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhhcCCCCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 87665667789999999999999999999999999999998765
No 12
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.89 E-value=4.8e-24 Score=211.82 Aligned_cols=143 Identities=22% Similarity=0.327 Sum_probs=112.0
Q ss_pred HHHHHHHHHhhhh---chhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceeccc
Q psy3362 71 VGVVLFVISVIQI---YRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAH 147 (550)
Q Consensus 71 ~~~l~~~~s~~~~---~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~ 147 (550)
..++..|++++.. .+|+||||+||+||+++++++||.+||+.+||.|+.+|+.+|||++|+++|+++||++||+.++
T Consensus 42 ~~LL~~AlTH~S~~~~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~ 121 (248)
T 3n3w_A 42 KNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSV 121 (248)
T ss_dssp HHHHHHHTBCTTSBTTBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCH
T ss_pred HHHHHHHhcCcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCc
Confidence 4567778877753 6899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcccchhhhhhhhHHHHHHHhhhHhhcCChhHHHHHhhhccccChhhhhh-hhccCCCCCCCcCCC
Q psy3362 148 GSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFK-QWMYYPQHPLQEQEP 213 (550)
Q Consensus 148 ~~~~~~~~~~~k~lAD~~EAliGA~yld~G~~~~~~~l~~l~~~~~~~~~~-~~~~~p~~~lq~~~P 213 (550)
++...++...+|++||+|||+|||+|+|+|++.+++|+..++.+.+.+... .....|++.+|+..+
T Consensus 122 ~e~~~~g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q 188 (248)
T 3n3w_A 122 AEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQ 188 (248)
T ss_dssp HHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC--------------------
T ss_pred hhhhcCCCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHH
Confidence 766556677789999999999999999999999999999987664333221 123456777887654
No 13
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.87 E-value=6.4e-23 Score=203.30 Aligned_cols=143 Identities=24% Similarity=0.291 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhh-------hchhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHc---CCC
Q psy3362 71 VGVVLFVISVIQ-------IYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLE 140 (550)
Q Consensus 71 ~~~l~~~~s~~~-------~~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~---gL~ 140 (550)
..++..++|++. ..+|+||||+||+||+++++++||.+||+.++|.|+.+|+.+|||++|+++|+++ ||+
T Consensus 20 ~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~~~gL~ 99 (242)
T 2a11_A 20 DELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLG 99 (242)
T ss_dssp HHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHHHHHHHHSSSCSG
T ss_pred HHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHhhhhChH
Confidence 445666666654 2479999999999999999999999999999999999999999999999999999 999
Q ss_pred cceecccCCcccchhhhhhhhHHHHHHHhhhHhhcCChhHHHHHhhhccccChhhhh-hhhccCCCCCCCcCCC
Q psy3362 141 DFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRF-KQWMYYPQHPLQEQEP 213 (550)
Q Consensus 141 ~~i~~~~~~~~~~~~~~~k~lAD~~EAliGA~yld~G~~~~~~~l~~l~~~~~~~~~-~~~~~~p~~~lq~~~P 213 (550)
+|++.++++...++...++++||+|||+|||+|+|+|++.+.+|+..++.+.+.... ......|++.+|+.++
T Consensus 100 ~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q 173 (242)
T 2a11_A 100 VHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTA 173 (242)
T ss_dssp GGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC----------------
T ss_pred HHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccccCChHHHHHHHHH
Confidence 999998876555556678999999999999999999999999999998766433221 1122346777777654
No 14
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.86 E-value=6.8e-23 Score=204.23 Aligned_cols=109 Identities=21% Similarity=0.384 Sum_probs=101.8
Q ss_pred hhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceecccCCcccchhhhhhhhHHH
Q psy3362 85 RMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANC 164 (550)
Q Consensus 85 ~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~~~~~~~~~~~~k~lAD~ 164 (550)
+|+||||+||+||+++++++||.+||+.++|.|+.+|+.+|||.+|+++|+++||++|++.++++...++...++++||+
T Consensus 61 ~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~ 140 (252)
T 1o0w_A 61 SNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 140 (252)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhH
Confidence 79999999999999999999999999999999999999999999999999999999999998876555566678999999
Q ss_pred HHHHhhhHhhcCChhHHHHHhhhccccCh
Q psy3362 165 FEALMGALFLDGGIDVADQVFSSVLYKDN 193 (550)
Q Consensus 165 ~EAliGA~yld~G~~~~~~~l~~l~~~~~ 193 (550)
|||+|||+|+|+|++.+.+|+..++.+.+
T Consensus 141 ~EAliGAiyld~g~~~~~~~i~~~~~~~~ 169 (252)
T 1o0w_A 141 FEALLAAIYLDQGYEKIKELFEQEFEFYI 169 (252)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876543
No 15
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.85 E-value=3.1e-22 Score=200.98 Aligned_cols=122 Identities=21% Similarity=0.336 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhhh------chhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCccee
Q psy3362 71 VGVVLFVISVIQI------YRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144 (550)
Q Consensus 71 ~~~l~~~~s~~~~------~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~ 144 (550)
..++..|+|++.. .+|+||||+||+||+++++++||.+||+.++|.||.+|+.+|||.+|+.+|+++||++|++
T Consensus 29 ~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~ 108 (265)
T 3c4b_A 29 KAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 108 (265)
T ss_dssp HHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCB
T ss_pred HHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHHHHHHHHHcChHHHHH
Confidence 3567777777752 3799999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc-----------------C---------------CcccchhhhhhhhHHHHHHHhhhHhhcCCh--hHHHHHhhhccc
Q psy3362 145 YAH-----------------G---------------SDLCHEVELKHAMANCFEALMGALFLDGGI--DVADQVFSSVLY 190 (550)
Q Consensus 145 ~~~-----------------~---------------~~~~~~~~~~k~lAD~~EAliGA~yld~G~--~~~~~~l~~l~~ 190 (550)
..+ + ....++...+|++||+|||+|||+|+|+|+ +.+++|+..++.
T Consensus 109 ~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~ 188 (265)
T 3c4b_A 109 AVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQ 188 (265)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecCCCHHHHHHHHHHHHH
Confidence 321 1 111223356899999999999999999998 889999998876
Q ss_pred cC
Q psy3362 191 KD 192 (550)
Q Consensus 191 ~~ 192 (550)
+.
T Consensus 189 ~~ 190 (265)
T 3c4b_A 189 PL 190 (265)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 16
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.85 E-value=4.3e-22 Score=196.07 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhh--------------hchhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHH
Q psy3362 71 VGVVLFVISVIQ--------------IYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 136 (550)
Q Consensus 71 ~~~l~~~~s~~~--------------~~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~ 136 (550)
..++..|++++. ..+|+||||+||+||+++++++||.+||+.+||.||.+|+.+|||.+|+++|++
T Consensus 100 ~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~lVsn~~La~iA~~ 179 (246)
T 3rv1_A 100 ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTK 179 (246)
T ss_dssp HHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHH
Confidence 356677777653 247999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceecccCCccc-chhhhhhhhHHHHHHHhhhHhhcC-C--hhHHHHHhhhccccChh
Q psy3362 137 IGLEDFMLYAHGSDLC-HEVELKHAMANCFEALMGALFLDG-G--IDVADQVFSSVLYKDNE 194 (550)
Q Consensus 137 ~gL~~~i~~~~~~~~~-~~~~~~k~lAD~~EAliGA~yld~-G--~~~~~~~l~~l~~~~~~ 194 (550)
+||++||+.+.|.... .+...++++||+|||+|||+|+|+ | ++.+++|+..++.|.++
T Consensus 180 lgL~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L~~p~l~ 241 (246)
T 3rv1_A 180 LNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLA 241 (246)
T ss_dssp TTSHHHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHH
T ss_pred CCcHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999964332211 122468999999999999999998 4 99999999998766443
No 17
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.84 E-value=5e-22 Score=194.21 Aligned_cols=116 Identities=20% Similarity=0.347 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhh---chhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceecccC
Q psy3362 72 GVVLFVISVIQI---YRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHG 148 (550)
Q Consensus 72 ~~l~~~~s~~~~---~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~~ 148 (550)
.++..|+|++.. .+|+||||+||+||+++++++||.+||+.++|.|+.+|+.+|||.+|+++|+++||++|++.+++
T Consensus 19 ~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~ 98 (221)
T 2nug_A 19 SLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG 98 (221)
T ss_dssp HHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTT
T ss_pred HHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCC
Confidence 567778887753 47999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcccchhhhhhhhHHHHHHHhhhHhhcCChhH--HHHHhhhccccCh
Q psy3362 149 SDLCHEVELKHAMANCFEALMGALFLDGGIDV--ADQVFSSVLYKDN 193 (550)
Q Consensus 149 ~~~~~~~~~~k~lAD~~EAliGA~yld~G~~~--~~~~l~~l~~~~~ 193 (550)
... ++++||+|||+|||+|+|+|++. +++|+..++.+.+
T Consensus 99 ~~~------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~ 139 (221)
T 2nug_A 99 KIN------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 139 (221)
T ss_dssp CCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred ccc------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 643 89999999999999999999999 9999999876543
No 18
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.84 E-value=1.5e-21 Score=201.46 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhh--------------hchhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHH
Q psy3362 71 VGVVLFVISVIQ--------------IYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 136 (550)
Q Consensus 71 ~~~l~~~~s~~~--------------~~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~ 136 (550)
..++..|+++.. ..+|+||||+||+||+++++++||.+||+.+||.|+.+|+.+|||.+|+++|.+
T Consensus 100 ~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~ 179 (341)
T 3rv0_A 100 ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTK 179 (341)
T ss_dssp HHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHH
Confidence 457777777663 247899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceecccCCccc-chhhhhhhhHHHHHHHhhhHhhcC---ChhHHHHHhhhccccChhhhhh-----hhccCCCCC
Q psy3362 137 IGLEDFMLYAHGSDLC-HEVELKHAMANCFEALMGALFLDG---GIDVADQVFSSVLYKDNEVRFK-----QWMYYPQHP 207 (550)
Q Consensus 137 ~gL~~~i~~~~~~~~~-~~~~~~k~lAD~~EAliGA~yld~---G~~~~~~~l~~l~~~~~~~~~~-----~~~~~p~~~ 207 (550)
+||++|++.+.+.... .+...++++||+|||+|||+|+|+ |++.+++|+..++.+...+... .....|++.
T Consensus 180 lgL~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~ 259 (341)
T 3rv0_A 180 LNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNE 259 (341)
T ss_dssp TTTTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGGC-------------
T ss_pred cCcHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHH
Confidence 9999999965332221 122468999999999999999998 9999999999987654332211 122446677
Q ss_pred CCcCCC
Q psy3362 208 LQEQEP 213 (550)
Q Consensus 208 lq~~~P 213 (550)
+|+..+
T Consensus 260 LqE~~Q 265 (341)
T 3rv0_A 260 LAELLQ 265 (341)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 777654
No 19
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.79 E-value=1.5e-19 Score=162.24 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=96.9
Q ss_pred hhchhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHc----CCC----cceecccCCcccc
Q psy3362 82 QIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI----GLE----DFMLYAHGSDLCH 153 (550)
Q Consensus 82 ~~~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~----gL~----~~i~~~~~~~~~~ 153 (550)
..++.++|||+||||++++|+.+||.+ |..+||+||.+|+.+||.++++.+++++ +|. .+++.+++....+
T Consensus 8 ~~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~ 86 (138)
T 1u61_A 8 KQLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGT 86 (138)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSC
T ss_pred hhcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCC
Confidence 457899999999999999999999999 8889999999999999999999999999 998 7898888775544
Q ss_pred hhhhhhh----hHHHHHHHhhhHhhcCChhHHHHHhhhcc
Q psy3362 154 EVELKHA----MANCFEALMGALFLDGGIDVADQVFSSVL 189 (550)
Q Consensus 154 ~~~~~k~----lAD~~EAliGA~yld~G~~~~~~~l~~l~ 189 (550)
...+.++ +||.|||+|||+|+|+|++.+.+|+.+++
T Consensus 87 ~~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 87 VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 126 (138)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455667 99999999999999999999999998765
No 20
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.76 E-value=9.8e-19 Score=156.89 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=93.1
Q ss_pred CCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchhHHHHHHHHc----Ccc----chhhccCCc----c
Q psy3362 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDI----GMP----FFANIINPK----V 329 (550)
Q Consensus 262 ~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~ia~~~----gL~----~~i~~~~~~----~ 329 (550)
..+.+|||||||+|++++|++||+.+ |..++|.|+.+|+.+||.++++.++..+ +|. ++++.+.++ .
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~ 87 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTV 87 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCC
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCC
Confidence 45899999999999999999999999 8889999999999999999999999999 998 788887664 3
Q ss_pred ccchhh----hhhHHHHHHhcccccCCcchhhhHHHhhc
Q psy3362 330 DLKMKD----RADLLEAFLGAMYIDKGMEACEQFCKVCF 364 (550)
Q Consensus 330 ~~~~k~----laD~fEAliGAIylD~G~~~~~~fi~~~~ 364 (550)
+.++++ +||.|||+|||||+|.|++.+++|+.+.+
T Consensus 88 ~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 88 PKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 126 (138)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456678 99999999999999999999999998765
No 21
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.70 E-value=1e-17 Score=149.98 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=89.3
Q ss_pred hhchhhhhhhcchhhhHHHHHHHHhhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcC--CC----cceecccCCcccchh
Q psy3362 82 QIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG--LE----DFMLYAHGSDLCHEV 155 (550)
Q Consensus 82 ~~~~~~~~~~~g~avLk~~vs~~l~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~g--L~----~~i~~~~~~~~~~~~ 155 (550)
..++.++|||+||||++++|+.+||.+ |. ++|+|+..|+.+||.+++++++++++ |. .+++.+.+....+..
T Consensus 11 ~~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~ 88 (137)
T 2gsl_A 11 RDYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFP 88 (137)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCC
T ss_pred hhcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCC
Confidence 457899999999999999999999998 88 99999999999999999999999996 66 555555543322222
Q ss_pred hhhh----hhHHHHHHHhhhHhhcCChhHHHHHhhhccc
Q psy3362 156 ELKH----AMANCFEALMGALFLDGGIDVADQVFSSVLY 190 (550)
Q Consensus 156 ~~~k----~lAD~~EAliGA~yld~G~~~~~~~l~~l~~ 190 (550)
.+.+ .+||.|||+|||+|+|+|++.+.+|+.+.+.
T Consensus 89 k~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~ 127 (137)
T 2gsl_A 89 RSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIK 127 (137)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334 5999999999999999999999999998753
No 22
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.67 E-value=4.7e-17 Score=145.65 Aligned_cols=104 Identities=23% Similarity=0.257 Sum_probs=89.3
Q ss_pred CCCchHHHHhhHHHHHHHHHHHHHhhCCCCCcchhhHHHHHhhchhHHHHHHHHcC--cc----chhhccCCc----ccc
Q psy3362 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIG--MP----FFANIINPK----VDL 331 (550)
Q Consensus 262 ~~~nerLEfLGDavL~~~v~~~l~~~~p~~~~g~Lt~lr~~lvsn~~La~ia~~~g--L~----~~i~~~~~~----~~~ 331 (550)
..|.+|||||||+|++++|++||+.+ |+ ++|.|+.+++.+||.+.++.++..++ |. .+++.+... .+.
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k 89 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPR 89 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCS
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCC
Confidence 45899999999999999999999998 88 99999999999999999999999997 65 555555432 233
Q ss_pred chhh----hhhHHHHHHhcccccCCcchhhhHHHhhcccc
Q psy3362 332 KMKD----RADLLEAFLGAMYIDKGMEACEQFCKVCFFPR 367 (550)
Q Consensus 332 ~~k~----laD~fEAliGAIylD~G~~~~~~fi~~~~~p~ 367 (550)
+.++ +||.|||+|||+|+|+|++.+++|+...+.-.
T Consensus 90 ~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~~~ 129 (137)
T 2gsl_A 90 SCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGE 129 (137)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5554 99999999999999999999999998876433
No 23
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=130.53 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=59.0
Q ss_pred cchhhhhhccccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHH
Q psy3362 366 PRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAA 445 (550)
Q Consensus 366 p~l~~~~~~~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA 445 (550)
|+.+.++......|||+.||||||+. + ..|+|++++++||+|.+.|+|.|+|+|+ +++|.|+|||+||+.||
T Consensus 2 p~~~~~~~~~~~kd~Ks~LqE~~q~~------~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA 73 (90)
T 3llh_A 2 PLGSHMLAANPGKTPISLLQEYGTRI------G-KTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAA 73 (90)
T ss_dssp -----------CCCHHHHHHHHHHHT------T-CCCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHH
T ss_pred cchhhhhccccCCCHHHHHHHHHHhc------C-CCCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHH
Confidence 44444455556789999999999873 2 3699999999999999999999999998 69999999999999999
Q ss_pred HHHHHhCccc
Q psy3362 446 KVALQKCPSI 455 (550)
Q Consensus 446 ~~AL~~L~~~ 455 (550)
+.||+.|...
T Consensus 74 ~~aL~~L~~~ 83 (90)
T 3llh_A 74 EVALKHLKGG 83 (90)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhc
Confidence 9999999754
No 24
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.5e-16 Score=129.38 Aligned_cols=77 Identities=65% Similarity=1.015 Sum_probs=66.9
Q ss_pred CCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 378 ~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
+|||+.||||||+.+. ++.....|+|++++++||+|.+.|+|.|+|+|+.+++|.|+|||+||+.||+.||+.|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~-~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCC-SSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhh-hcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 4899999999997310 1223567999999999999999999999999999999999999999999999999998754
No 25
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.64 E-value=3.6e-16 Score=126.76 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=65.4
Q ss_pred CCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 378 ~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
.|||+.||||||+. +...|.|+++++.||+|.+.|+|.|+|+|+.+++|.|+|||+||+.||+.||+.|..
T Consensus 4 ~n~Kt~LqE~~q~~------~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKM------NYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTT------TCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh------CCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 57999999999973 456799999999999999999999999999999999999999999999999998863
No 26
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=127.70 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=66.2
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
...|||+.||||||+. +...|+|++++++||+|.+.|+|.|+|+|. +++|.|+|||+||+.||+.||+.|..+
T Consensus 13 ~~~d~Ks~LqE~~Q~~------~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 13 RGSHEVGALQELVVQK------GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTCCHHHHHHHHHHHT------TCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHc------CCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 4569999999999983 456799999999999999999999999998 999999999999999999999999754
No 27
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.63 E-value=5.2e-16 Score=123.47 Aligned_cols=67 Identities=27% Similarity=0.377 Sum_probs=62.3
Q ss_pred ccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCc
Q psy3362 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453 (550)
Q Consensus 380 Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~ 453 (550)
|++.||||||+. +...|.|++++++||+|.+.|+|.|+++|. +++|.|+|||+||+.||+.||+.|+
T Consensus 2 p~s~LqE~~q~~------~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQK------GWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHH------TCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc------CCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 899999999984 346799999999999999999999999998 9999999999999999999999875
No 28
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.61 E-value=1.1e-15 Score=122.89 Aligned_cols=69 Identities=26% Similarity=0.424 Sum_probs=63.5
Q ss_pred CCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEc-CCHHHHHHHHHHHHHHhCc
Q psy3362 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG-NSIQQAEMNAAKVALQKCP 453 (550)
Q Consensus 378 ~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G-~SkK~Ae~~AA~~AL~~L~ 453 (550)
.|||+.||||||+. +...|.|+++++ ||+|.+.|+|.|+|+|+.+++|.| +|||+||+.||+.||+.|.
T Consensus 3 ~d~Kt~LqE~~q~~------~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKY------KLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHT------TCCCCEEEEEEE-SSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHc------CCCCCEEEEEeE-CCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 58999999999983 456799999885 999999999999999999999999 9999999999999999875
No 29
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.61 E-value=2e-15 Score=125.92 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=66.5
Q ss_pred cccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 375 QEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 375 ~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
....|||+.||||||+. ++..|+|+++++.||+|.+.|+|.|+|+|. +++|.|+|||+||+.||+.||+.|.+
T Consensus 13 ~~~~d~Kt~LqE~~Qk~------~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 13 QSECNPVGALQELVVQK------GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCCCHHHHHHHHHHHH------TCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc------CCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 34679999999999984 346799999999999999999999999998 99999999999999999999999864
No 30
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.60 E-value=3.3e-15 Score=124.59 Aligned_cols=71 Identities=27% Similarity=0.303 Sum_probs=64.9
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
..|||+.||||||+. +...|.|+++++.||+|.+.|+|.|+|+|+ +++|.|+|||+||+.||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~------~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQAR------KEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHT------TSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHh------CCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 368999999999983 456799999999999999999999999996 89999999999999999999999963
No 31
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.59 E-value=2.3e-15 Score=124.31 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
..|||+.||||||+. + ..|.|+++++.||+|.+.|+|.|+|+| .+++|.|+|||+||+.||+.||+.|...
T Consensus 7 ~~d~Ks~LqE~~q~~------~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKT------K-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHT------T-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc------C-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 478999999999983 3 479999999999999999999999999 8899999999999999999999998643
No 32
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.58 E-value=6.1e-16 Score=125.43 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=64.8
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
...|||+.||||||+. +.. |.|++++++||+|.+.|+|+|+++| .+++|.|+|||+||+.||+.||+.|+.
T Consensus 5 ~~~d~ks~LqE~~q~~------~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKR------NMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHT------TCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHc------CCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4568999999999983 345 9999999999999999999999999 889999999999999999999998864
No 33
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=4.4e-15 Score=127.25 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=63.4
Q ss_pred cchhhhhhccccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEc-CCHHHHHHHH
Q psy3362 366 PRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG-NSIQQAEMNA 444 (550)
Q Consensus 366 p~l~~~~~~~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G-~SkK~Ae~~A 444 (550)
+..+.........|||+.||||||+. +...|.|+++++ ||+|.+.|+|.|+|+|+.+++|.| +|||+||+.|
T Consensus 5 ~~~~~~~~~~~~~d~Kt~LqE~~Q~~------~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~A 77 (103)
T 2l2n_A 5 TSTDVSSGVSNCYVFKSRLQEYAQKY------KLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77 (103)
T ss_dssp --------------CTTHHHHHHHHT------TCCCCEEEEEEE-SCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHH
T ss_pred hhhhhccccCCCCCHHHHHHHHHHHc------CCCCCeEEEEeE-cCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHH
Confidence 33333333345679999999999983 456799999885 999999999999999999999999 9999999999
Q ss_pred HHHHHHhCccc
Q psy3362 445 AKVALQKCPSI 455 (550)
Q Consensus 445 A~~AL~~L~~~ 455 (550)
|+.||+.|...
T Consensus 78 A~~AL~~L~~~ 88 (103)
T 2l2n_A 78 AEVALRELAKS 88 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999743
No 34
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.55 E-value=9.4e-15 Score=117.46 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=63.0
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
..|||+.||||||. ...|.|++++++||+|.+.|+|.|.|+|+.+ +|.|+|||+||+.||+.||+.|..
T Consensus 3 ~~d~Ks~Lqe~~q~--------~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--------KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--------CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--------CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 35899999999995 2578999999999999999999999999885 999999999999999999998864
No 35
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.55 E-value=3.1e-15 Score=124.93 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=63.5
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCE-EEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNE-RLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~-~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
..|||+.||||+|+. ...|.|+++++ ||+|.+.|+|.|+|+|+ .+|+|.|+|||+|||.||+.||++|+-+
T Consensus 5 ~~D~KT~LQE~~Q~~-------~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l 76 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-------SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 76 (94)
T ss_dssp CHHHHHHHHHHTCSS-------SSCCEEEECCC-CSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCchHHHHHHHcCC-------CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 358999999999862 24699999765 99999999999999999 8999999999999999999999988755
No 36
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.54 E-value=5.8e-15 Score=125.08 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=65.9
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
...|||+.||||||+. +.. |.|+++++.||+|.+.|+|.|+|+|+.+++|.|+|||+||+.||+.||+.|.+.
T Consensus 12 ~~~n~Kt~LqE~~Q~~------~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMH------GVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHH------TCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHc------CCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999984 233 799999999999999999999999999999999999999999999999999744
No 37
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.53 E-value=1.9e-14 Score=122.14 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=64.6
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
...|||+.||||||+. +...|+|+++++.||+ +.|+|.|+++|+.+++|.|+|||+||+.||+.||+.|..
T Consensus 14 ~~kd~Kt~LqE~~Q~~------~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 14 NGKSEVCILHEYMQRV------LKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp TCCCHHHHHHHHHHHH------TCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHc------CCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 5679999999999984 3467999999889987 899999999999999999999999999999999999863
No 38
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.53 E-value=2.5e-14 Score=121.30 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=64.9
Q ss_pred cccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 375 QEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 375 ~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
....|||+.||||||+. ..|+|+++++.||+|.+.|+|.|+|+|+.+ +|.|+|||+||+.||+.||+.|..
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--------~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--------PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--------CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC--------CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 35679999999999971 478999999999999999999999999987 999999999999999999999964
No 39
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.52 E-value=1.2e-14 Score=123.62 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=64.6
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECC-EEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g-~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
..|||+.||||||+ + ...|+|++ ++.||+|.+.|+|.|+|+| +.+++|.|+|||+||+.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Qk------~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 5 SSGIKNFLYAWCGK------R-KMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHH------T-TCCCEEEE-EEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH------C-CCCCeEEE-eeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 36899999999998 3 45799999 8899999999999999999 78999999999999999999999998743
No 40
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=118.25 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=65.9
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcccC
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSIC 456 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~~ 456 (550)
..++|+.||||||+. + .|.|++++++||+|.+.|+|.|.|+|+.+ +|.|+|||+||+.||+.||+.|....
T Consensus 13 ~~~~K~~LqEl~Qk~------~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~ 83 (91)
T 2l33_A 13 TKHGKNPVMELNEKR------R--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT 83 (91)
T ss_dssp CSSTTCHHHHHHHHC------S--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCHHHHHHHhC------C--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence 357999999999972 2 78999999999999999999999999885 99999999999999999999998665
Q ss_pred Cch
Q psy3362 457 PQL 459 (550)
Q Consensus 457 ~~~ 459 (550)
+..
T Consensus 84 ~~~ 86 (91)
T 2l33_A 84 PLA 86 (91)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 41
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.51 E-value=1.7e-14 Score=124.65 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=63.7
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCE-EEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNE-RLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~-~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
..|||+.||||+|+. ...|.|+++++ ||+|.+.|+|.|+|+|+ .+|+|.|+|||+|||.||+.||+.+.-+
T Consensus 7 ~~D~KT~LQE~~Q~~-------~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l 78 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-------SLRLHYVTVKK-PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 78 (117)
T ss_dssp CTTHHHHHHHHHCCG-------GGCCEEEEEEC-CCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCchHHHHHHHcCC-------CCCCEEEEeee-CCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999862 24699999886 99999999999999999 8999999999999999999999887644
No 42
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.49 E-value=6.5e-14 Score=116.54 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=62.3
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCc-cEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSR-SYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~-~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
..|||+.||||||+. +. .+.|+ ++.||+|.+ .|+|.|+|+|+.+++|.|+|||+||+.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Q~~------~~-~~~Y~--~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKK------KL-SVNYE--QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHT------TC-CEEEE--ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHc------CC-CCeeE--EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 358999999999983 23 34898 678999999 799999999999999999999999999999999999765
No 43
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.45 E-value=1.3e-13 Score=119.61 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=62.5
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
...|||+.||||||. |+|++++++||+|.+.|+|+|+|+|+.+ +|.|+|||+||+.||+.||+.|...
T Consensus 35 ~~kd~Ks~LQE~~q~-----------p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----------LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CCSCHHHHHHHHCSC-----------CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHccC-----------CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 356999999999762 8999999999999999999999999999 9999999999999999999998754
No 44
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.45 E-value=1.1e-13 Score=120.42 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=63.3
Q ss_pred CCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEE-----CCEEEEEEEcCCHHHHHHHHHHHHHHhC
Q psy3362 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYF-----KNERLAKATGNSIQQAEMNAAKVALQKC 452 (550)
Q Consensus 378 ~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v-----~g~~lg~G~G~SkK~Ae~~AA~~AL~~L 452 (550)
.|||+.||||||+. +. .|.|+ +++.||+|.+.|+|.|+| +|+.+++|.|+|||+||+.||+.||+.|
T Consensus 26 ~d~Kt~LqE~~Qk~------~~-~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L 97 (113)
T 1uil_A 26 ENAKARLNQYFQKE------KI-QGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQL 97 (113)
T ss_dssp HHHHHHHHHHHHHS------CC-CCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC------CC-CCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 58999999999983 34 79999 688999999999999999 6888999999999999999999999988
Q ss_pred ccc
Q psy3362 453 PSI 455 (550)
Q Consensus 453 ~~~ 455 (550)
...
T Consensus 98 ~~~ 100 (113)
T 1uil_A 98 YHL 100 (113)
T ss_dssp HHH
T ss_pred Hhc
Confidence 643
No 45
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.45 E-value=1e-13 Score=110.80 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=60.1
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
.+||++.||||| ..|.|++++++||+|.+.|+|+|.|+|+. ++|.|+|||+||+.||+.||+.|..
T Consensus 3 ~knp~s~L~E~~-----------~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 3 GKNPVMILNELR-----------PGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp SSCHHHHHHHHC-----------CSCEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----------CCCEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 468999999993 35899999999999999999999999986 5999999999999999999998864
No 46
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.41 E-value=7.2e-13 Score=106.92 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=52.5
Q ss_pred CCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcccCC
Q psy3362 400 DIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICP 457 (550)
Q Consensus 400 ~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~~~ 457 (550)
..|.|++++++||+|.+.|+|.|.|+|+.+ +|.|+|||+||+.||+.||+.|....|
T Consensus 18 ~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 18 RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence 368999999999999999999999999887 999999999999999999999976544
No 47
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.39 E-value=4.7e-13 Score=118.68 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=63.4
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEc-CCHHHHHHHHHHHHHHhCcc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG-NSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G-~SkK~Ae~~AA~~AL~~L~~ 454 (550)
...|||+.||||||+. +...|+|+++++ +|.+.|+|.|+|+|+.+++|.| +|||+||+.||+.||+.|..
T Consensus 24 ~~~d~Kt~LQE~~Qk~------~~~~P~Y~~v~~---~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 24 PQITPKMCLLEWCRRE------KLPQPVYETVQR---TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp TTCCHHHHHHHHHHHT------TCCCCCCCEEEC---SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHc------CCCCCeEEEEee---cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 3468999999999983 456799999875 8899999999999999999999 99999999999999999963
Q ss_pred c
Q psy3362 455 I 455 (550)
Q Consensus 455 ~ 455 (550)
.
T Consensus 95 ~ 95 (128)
T 1whn_A 95 P 95 (128)
T ss_dssp S
T ss_pred c
Confidence 3
No 48
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.29 E-value=1.7e-12 Score=122.38 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=66.1
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
...|||+.||||||+. +.. |.|+++++.||+|.+.|+|.|.|+|+.+++|.|+|||+||+.||+.||+.|...
T Consensus 11 ~~~n~ks~LqE~~q~~------~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQ------GVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SSCSHHHHHHHHHHHH------TCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhC------CCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 4568999999999984 233 899999889999999999999999998999999999999999999999999755
No 49
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=120.44 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=65.8
Q ss_pred cccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 375 QEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 375 ~~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
....|||+.||||||+. +...|.|+++++.||+ +.|+|.|+|+|+.+++|.|+|||+||+.||+.||+.|..
T Consensus 19 ~~~kd~ks~LqE~~q~~------~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~ 90 (232)
T 2yt4_A 19 PNGKSEVCILHEYMQRV------LKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 90 (232)
T ss_dssp CTTSCHHHHHHHHHHHT------TCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHc------CCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHh
Confidence 35679999999999983 3467999999889987 899999999999999999999999999999999999976
Q ss_pred c
Q psy3362 455 I 455 (550)
Q Consensus 455 ~ 455 (550)
.
T Consensus 91 ~ 91 (232)
T 2yt4_A 91 D 91 (232)
T ss_dssp T
T ss_pred h
Confidence 4
No 50
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.98 E-value=8.2e-10 Score=108.49 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=61.3
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
...|||+.||||+ ..|.|+++++.||+|.+.|+|+|.|+|+. ++|.|+|||+||+.||+.||+.|...
T Consensus 159 ~~~d~ks~LqE~~-----------~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNELR-----------PGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHHC-----------CCEEEEEECCSSSSSSCCEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhcC-----------CCCcEEEEEeeCCCCCCeEEEEEEECCEE-EEeeeCCHHHHHHHHHHHHHHHHccc
Confidence 3569999999991 35899999999999999999999999987 49999999999999999999999754
No 51
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.95 E-value=1.7e-09 Score=106.25 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=61.5
Q ss_pred CCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 378 ~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
.+||+.|+++++. ...|.|++++++||+|.+.|+|.|.|+|+. ++|.|.|||+||+.||+.||+.|...
T Consensus 4 ~~~K~~l~~l~e~--------~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 4 VLPKNALMQLNEI--------KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCTHHHHHHHHHH--------CSSCEEEEEEEESCTTSCEEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHhhc--------CCCceEEEEeccCCCCCCeEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhc
Confidence 4788899888763 246899999999999999999999999988 59999999999999999999998764
No 52
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.88 E-value=1.8e-09 Score=101.60 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=62.2
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCcc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPS 454 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~ 454 (550)
...||++.|+|+|++. ++ .+.|+. .+.|++|.+.|+++|.|+|..++.|.|+|||+||+.||+.||+.|..
T Consensus 102 ~~~n~~~~L~E~~qk~------~~-~~~Y~~-~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~ 172 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKK------RL-TVNYEQ-CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILS 172 (179)
T ss_dssp CCCCCHHHHHHHHHHS------CC-EEEEEE-EEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc------CC-cceEEe-cCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhc
Confidence 3468999999999983 33 358986 46899999999999999999889999999999999999999998854
No 53
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.82 E-value=3.6e-09 Score=103.61 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=55.5
Q ss_pred ccCCccHHHHHHHhhcccccCCCCCCCeeE--EEeeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCc
Q psy3362 376 EWNDPKSKLQQCCLTLRTLDGGEPDIPIYK--VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCP 453 (550)
Q Consensus 376 ~~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~--~~~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~ 453 (550)
...||++.||| |++. +...|.|+ ++...||+|.+.|+|.|. ..++.|.|+|||+||+.||+.||+.|.
T Consensus 128 ~~~d~kt~LqE-~~~~------~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~ 197 (232)
T 2yt4_A 128 GLLSPYQILHE-CLKR------NHGMGDTSIKFEVVPGKNQKSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLH 197 (232)
T ss_dssp TCCCHHHHHHH-HHHT------SSSCCCEEEECC------CCEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CCCChhHHHHH-HHHc------CCCCCceEEEEeecCCCCCCCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 34699999999 8862 35678998 777889999999998875 567999999999999999999999998
Q ss_pred ccCC
Q psy3362 454 SICP 457 (550)
Q Consensus 454 ~~~~ 457 (550)
...+
T Consensus 198 ~~~~ 201 (232)
T 2yt4_A 198 PHVK 201 (232)
T ss_dssp TTCC
T ss_pred hhcc
Confidence 6543
No 54
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.028 Score=47.28 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=45.4
Q ss_pred cCCccHHHHHHHhhcccccCCCCCCCeeEEE-eeeCCCCCccEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHhCccc
Q psy3362 377 WNDPKSKLQQCCLTLRTLDGGEPDIPIYKVI-EHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSI 455 (550)
Q Consensus 377 ~~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~-~~~g~~~~~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA~~AL~~L~~~ 455 (550)
...||+.|....+.--. . ...-.|.+- ..+|.. .+..++++..-.-.-++|.|+.|.+||++||..|+++|+++
T Consensus 16 Fp~PKnLL~~ViqrA~~--s--s~~kd~l~~~~t~g~k-~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~L 90 (119)
T 2db2_A 16 FPQPKNLLNSVIGRALG--I--SHAKDKLVYVHTNGPK-KKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGW 90 (119)
T ss_dssp CSCHHHHHHHHHHHHTT--H--HHHHHHEEEEECCSSS-SEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHc--c--CchhhheeEEeecCCc-eeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHc
Confidence 45799998776654200 0 001122111 123322 23344444444566789999999999999999999999887
No 55
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=93.77 E-value=0.19 Score=42.16 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=50.1
Q ss_pred CCccHHHHHHHhhcccccCCCCCCCeeEEEeeeCCCCCccEEEEEEECC-----EEEEEEEcCCHHHHHHHHHHHHHHhC
Q psy3362 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKN-----ERLAKATGNSIQQAEMNAAKVALQKC 452 (550)
Q Consensus 378 ~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g~~~~~~F~v~V~v~g-----~~lg~G~G~SkK~Ae~~AA~~AL~~L 452 (550)
.+.++.|++||+++-. +......|+|.+.+.... ...| |+|.+-. ...|.-. .||+.||+.||.+|.+.|
T Consensus 4 ~sAi~lL~~yC~~Lp~-d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~~splr~i~g~~~-~sk~~AK~sAAf~Ac~~L 78 (102)
T 2kou_A 4 GSSISMMYKYCSRLPH-DEFFQPKPEFQFKPVDEF--GGTI-CRITLPANAPISEIESSLL-PSTEAAKKDACLKAVHEL 78 (102)
T ss_dssp SHHHHHHHHHHTTSSS-CTTCCSSCEEEEEECCGG--GCEE-EEEECCTTCSSCCEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ccccCccceEEEeEeecC--CCeE-EEEECCCCCCCCeeeCCcc-ccHHHHHHHHHHHHHHHH
Confidence 3567889999988632 111235688886433221 2356 8888754 2334333 999999999999999998
Q ss_pred cccCC
Q psy3362 453 PSICP 457 (550)
Q Consensus 453 ~~~~~ 457 (550)
-+...
T Consensus 79 ~~~G~ 83 (102)
T 2kou_A 79 HNLGV 83 (102)
T ss_dssp HHHCS
T ss_pred HHCCC
Confidence 76633
No 56
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=85.03 E-value=3.7 Score=34.38 Aligned_cols=82 Identities=28% Similarity=0.303 Sum_probs=60.6
Q ss_pred hhhcchhhhHHHHHHHH--hhhCCCCCcchHHHHHHHhhcHHHHHHHHHHcCCCcceecccCCcccchhhhhhhhHHHHH
Q psy3362 89 YIHKGNNFSQFITSIHL--FHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFE 166 (550)
Q Consensus 89 ~~~~g~avLk~~vs~~l--~~~~p~~~eg~lt~~R~~lVsn~~L~~~a~~~gL~~~i~~~~~~~~~~~~~~~k~lAD~~E 166 (550)
|.-+||+.++|+.|.-| |..+|.-. -|-|.+|+..-..-||...+ +.. .+....|+.|
T Consensus 15 LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~--pR~--------DKh~kGd~aE 74 (133)
T 1ztd_A 15 LAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNL--RRV--------DKHAKGDYAE 74 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGC--CGG--------GTTCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcC--Ccc--------cccCccHHHH
Confidence 45569999999998876 44566432 37788999888888988876 221 1456689999
Q ss_pred HHhhhHhhcCC--hhHHHHHhhhccc
Q psy3362 167 ALMGALFLDGG--IDVADQVFSSVLY 190 (550)
Q Consensus 167 AliGA~yld~G--~~~~~~~l~~l~~ 190 (550)
|+|.-.|+.+- .+.+.++++.-+-
T Consensus 75 A~iAyAWleG~is~eEaveilk~nl~ 100 (133)
T 1ztd_A 75 ALIAKAWLMGLISEREAVEIIKKNLY 100 (133)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccccHHHHHHHHHhcCc
Confidence 99999999876 5667777776543
No 57
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=84.43 E-value=1.3 Score=50.46 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCccHHHHHHHhhcccccCCCCCCCeeEEEeeeC-----------CCCC-ccEEEEEEECCEEEEEEEcCCHHHHHHHHH
Q psy3362 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVG-----------PTNS-RSYTVAVYFKNERLAKATGNSIQQAEMNAA 445 (550)
Q Consensus 378 ~~Pk~~Lqe~~~~~~~l~~~~~~~p~y~~~~~~g-----------~~~~-~~F~v~V~v~g~~lg~G~G~SkK~Ae~~AA 445 (550)
..||..+++.. ...+.|++.+... |... -.|.|.+.+-+-.+.++.=+-||+|||.||
T Consensus 17 ~~pk~~~~q~~----------~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa 86 (950)
T 3htx_A 17 PTPKAIIHQKF----------GAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAA 86 (950)
T ss_dssp CCCHHHHHHTT----------GGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHH
T ss_pred CCHHHHHHHHh----------CcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHH
Confidence 35787776532 2346787654321 1122 379999999766555788899999999999
Q ss_pred HHHHHhCccc
Q psy3362 446 KVALQKCPSI 455 (550)
Q Consensus 446 ~~AL~~L~~~ 455 (550)
+.||++|+..
T Consensus 87 ~~al~~~g~~ 96 (950)
T 3htx_A 87 ELALDKLGIR 96 (950)
T ss_dssp HHHHTTTTST
T ss_pred HHHHHHhCCC
Confidence 9999999864
No 58
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=75.72 E-value=8.5 Score=32.23 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=61.9
Q ss_pred CchHHHHhhHHHHHHHHHHHHHh--hCCCCCcchhhHHHHHhhchhHHHHHHHHcCccchhhccCCccccchhhhhhHHH
Q psy3362 264 SNQRLEFLGDTVLQLITSDYLYN--HFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLE 341 (550)
Q Consensus 264 ~nerLEfLGDavL~~~v~~~l~~--~~p~~~~g~Lt~lr~~lvsn~~La~ia~~~gL~~~i~~~~~~~~~~~k~laD~fE 341 (550)
.-.-|.-+||++++++++.-|.+ -+|.-. -|-|.+|+.....-||.+.+. +......+|+.|
T Consensus 11 tdK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~p------R~DKh~kGd~aE 74 (133)
T 1ztd_A 11 IDKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLR------RVDKHAKGDYAE 74 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCC------GGGTTCHHHHHH
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcCC------cccccCccHHHH
Confidence 45678999999999999887753 334322 245788888778888888762 222345799999
Q ss_pred HHHhcccccCCc--chhhhHHHhhcccch
Q psy3362 342 AFLGAMYIDKGM--EACEQFCKVCFFPRL 368 (550)
Q Consensus 342 AliGAIylD~G~--~~~~~fi~~~~~p~l 368 (550)
|+|+-.++.+-+ +.+.+++...+.+.+
T Consensus 75 A~iAyAWleG~is~eEaveilk~nl~~dv 103 (133)
T 1ztd_A 75 ALIAKAWLMGLISEREAVEIIKKNLYPEV 103 (133)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHhccccHHHHHHHHHhcCcHhh
Confidence 999999998754 445556655554443
Done!