Your job contains 1 sequence.
>psy3362
MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEADGQFLVTWA
SQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATY
RAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDV
ADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIF
NHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLR
SSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFC
KVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTV
AVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKRVIAKSIELQKHEGIFG
AWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNVNPQFVGGTSE
GTSAQNPRIN
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3362
(550 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 1417 5.1e-145 1
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 1147 2.1e-116 1
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 1147 2.1e-116 1
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 1147 2.1e-116 1
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 1147 2.1e-116 1
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 1146 2.7e-116 1
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 1146 2.7e-116 1
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 1145 3.4e-116 1
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 1145 3.4e-116 1
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 1141 9.1e-116 1
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 879 5.3e-88 1
WB|WBGene00009163 - symbol:drsh-1 species:6239 "Caenorhab... 873 2.3e-87 1
UNIPROTKB|O01326 - symbol:drsh-1 "Ribonuclease 3" species... 873 2.3e-87 1
RGD|1307626 - symbol:Drosha "drosha, ribonuclease type II... 761 1.7e-75 1
UNIPROTKB|F1M2R2 - symbol:F1M2R2 "Uncharacterized protein... 761 1.7e-75 1
ZFIN|ZDB-GENE-040808-25 - symbol:tmem179 "transmembrane p... 175 6.8e-19 2
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 222 1.6e-17 1
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 221 2.0e-17 1
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 216 7.1e-17 1
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 215 9.1e-17 1
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 214 1.2e-16 1
TIGR_CMR|GSU_2228 - symbol:GSU_2228 "ribonuclease III" sp... 209 4.1e-16 1
UNIPROTKB|I3L9L1 - symbol:I3L9L1 "Uncharacterized protein... 202 2.3e-15 1
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 194 1.7e-14 1
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 194 1.7e-14 1
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 193 2.2e-14 1
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 190 4.6e-14 1
TIGR_CMR|SO_1348 - symbol:SO_1348 "ribonuclease III" spec... 186 1.2e-13 1
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 183 2.6e-13 1
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 182 3.4e-13 1
UNIPROTKB|P66666 - symbol:rnc "Ribonuclease 3" species:17... 182 3.4e-13 1
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 176 1.5e-12 1
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 157 6.0e-12 3
UNIPROTKB|Q6ZVK1 - symbol:TMEM179 "Transmembrane protein ... 145 5.6e-11 2
MGI|MGI:2144891 - symbol:Tmem179 "transmembrane protein 1... 139 3.6e-10 2
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 181 4.1e-10 1
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 181 4.1e-10 1
ZFIN|ZDB-GENE-060929-752 - symbol:zgc:153018 "zgc:153018"... 148 2.0e-09 2
TIGR_CMR|SPO_3198 - symbol:SPO_3198 "ribonuclease III" sp... 153 7.7e-09 1
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 162 2.3e-08 2
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 97 2.8e-08 4
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 108 3.1e-08 3
POMBASE|SPBC119.11c - symbol:pac1 "double-strand-specific... 152 9.0e-08 1
CGD|CAL0001312 - symbol:DCR1 species:5476 "Candida albica... 156 9.6e-08 2
UNIPROTKB|Q5A694 - symbol:RNT1 "Probable ribonuclease III... 156 9.6e-08 2
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 97 7.7e-07 4
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 97 9.6e-07 4
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 93 1.2e-06 4
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 94 1.6e-06 4
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 94 1.6e-06 4
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 94 1.6e-06 4
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 100 2.2e-06 4
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 93 3.0e-06 4
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 94 1.7e-05 4
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 94 2.2e-05 4
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 100 5.1e-05 3
UNIPROTKB|A7TR32 - symbol:Kpol_455p11 "Putative uncharact... 128 8.5e-05 1
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 111 0.00011 3
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 121 0.00030 3
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 109 0.00034 4
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 97 0.00035 3
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 134 0.00054 2
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 98 0.00088 4
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
Identities = 265/381 (69%), Positives = 313/381 (82%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F++SIHLF +FP++EEGGLATYRAAIVQNQHLA LAK++ LE+FMLYAHGSDLC
Sbjct: 839 GDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLC 898
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
HE+EL+HAMANCFEALMGAL LDGGI VAD+VF+ L++ +E W P+HPLQEQE
Sbjct: 899 HELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLPEHPLQEQE 958
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR ++ +LK+L E S G+ F HIRLLAR FT RS+G+T+LTLGSNQRLEFLG
Sbjct: 959 PLGDRSCIDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLG 1018
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLK 332
DTVLQLI S+YLY HFPEHHEGH VNNRTQ+VVC+D+GMP +A NPK DLK
Sbjct: 1019 DTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLK 1078
Query: 333 MKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLR 392
KDRADLLEAFLGA+Y+DKG+ CEQFC VC FPRLQ FI+NQ+WNDPKSKLQQCCLTLR
Sbjct: 1079 TKDRADLLEAFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLR 1138
Query: 393 TLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKC 452
T+DGGEPDIP YKV+E GPTN+R Y VAVYF+++RLA ++G+SIQQAEMNAAK AL+
Sbjct: 1139 TMDGGEPDIPYYKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALENS 1198
Query: 453 PSICPQLDHQKRVIAKSIELQ 473
+ PQLDHQKRVIAKSI+ Q
Sbjct: 1199 RDLFPQLDHQKRVIAKSIKKQ 1219
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 56/217 (25%), Positives = 106/217 (48%)
Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
+++ Y+ I + +++R F +N+T N+RLEFLGD V++ ++S +L+
Sbjct: 797 RKIHYMNTRKRGINTLVSIMSR-FGKEHETVSNIT--HNERLEFLGDAVVEFLSSIHLFF 853
Query: 287 HFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFF---ANIINPKVDLKMKDR-ADLLEA 342
FPE EG V N+ +++ + + F A+ + +L+++ A+ EA
Sbjct: 854 MFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEA 913
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
+GA+ +D G++ ++ F R +L+ N P+ LQ+ L G I
Sbjct: 914 LMGALLLDGGIKVADEVFTDALF-RQDEKLLSIWKNLPEHPLQE----QEPL-GDRSCID 967
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERL-AKA-TGNSI 437
Y+V++ + T ++ + FK+ RL A+A T SI
Sbjct: 968 SYRVLKEL--TKFED-SIGIKFKHIRLLARAFTDRSI 1001
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 219/388 (56%), Positives = 288/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+H+FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 892 GDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 951
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+GG++ A +F +L+ ++R + W+ YP HPLQ QE
Sbjct: 952 RESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMR-EVWLNYPPHPLQVQE 1010
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P DRQ +E SP+L++L E + GV+F H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1011 PLTDRQLIESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1070
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM FA I N K
Sbjct: 1071 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1129
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1130 VALRTKTLADLLESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1189
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1190 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1248
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 1249 LEKYNF--PQMAHQKRFIERKYRQELKE 1274
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 45/147 (30%), Positives = 70/147 (47%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY+ FP EG V N+ +++ + + F
Sbjct: 882 INHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 941
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFI--LN 374
P + DL+ A+ EA +GA+Y++ G+E + F RL + +
Sbjct: 942 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGGLEEAKDL-----FGRLLFNTEDMR 995
Query: 375 QEW-NDPKSKLQ-QCCLTLRTLDGGEP 399
+ W N P LQ Q LT R L P
Sbjct: 996 EVWLNYPPHPLQVQEPLTDRQLIESSP 1022
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 219/388 (56%), Positives = 290/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 225 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 284
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 285 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 343
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 344 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 403
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 404 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 462
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 463 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 522
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 523 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 581
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 582 LEKYNF--PQMAHQKRFIERKYRQELKE 607
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY FP EG V N+ +++ + + F
Sbjct: 215 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 274
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFF-PRLQYFILN 374
P + DL+ A+ EA +GA+Y++ +E +Q F ++ F P L+ LN
Sbjct: 275 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 333
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 219/388 (56%), Positives = 290/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 972 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1031
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1032 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1090
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1209
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1210 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1269
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1270 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1328
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 1329 LEKYNF--PQMAHQKRFIERKYRQELKE 1354
Score = 125 (49.1 bits), Expect = 0.00056, P = 0.00056
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY FP EG V N+ +++ + + F
Sbjct: 962 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 1021
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFF-PRLQYFILN 374
P + DL+ A+ EA +GA+Y++ +E +Q F ++ F P L+ LN
Sbjct: 1022 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 1080
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 219/388 (56%), Positives = 290/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 971 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1030
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1031 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1089
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1090 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1149
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 1150 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1208
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1209 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1268
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1269 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1327
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 1328 LEKYNF--PQMAHQKRFIERKYRQELKE 1353
Score = 125 (49.1 bits), Expect = 0.00056, P = 0.00056
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY FP EG V N+ +++ + + F
Sbjct: 961 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 1020
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFF-PRLQYFILN 374
P + DL+ A+ EA +GA+Y++ +E +Q F ++ F P L+ LN
Sbjct: 1021 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 1079
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 219/388 (56%), Positives = 290/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 966 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1025
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1026 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1084
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1085 PNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1144
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 1145 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1203
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1204 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1263
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1264 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1322
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 1323 LEKYNF--PQMAHQKRFIERKYRQELKE 1348
Score = 125 (49.1 bits), Expect = 0.00056, P = 0.00056
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY FP EG V N+ +++ + + F
Sbjct: 956 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 1015
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFF-PRLQYFILN 374
P + DL+ A+ EA +GA+Y++ +E +Q F ++ F P L+ LN
Sbjct: 1016 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 1074
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 219/388 (56%), Positives = 290/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 926 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 985
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 986 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1044
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1045 PNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1104
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 1105 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1163
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1164 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1223
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1224 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1282
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 1283 LEKYNF--PQMAHQKRFIERKYRQELKE 1308
Score = 125 (49.1 bits), Expect = 0.00054, P = 0.00054
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY FP EG V N+ +++ + + F
Sbjct: 916 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 975
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFF-PRLQYFILN 374
P + DL+ A+ EA +GA+Y++ +E +Q F ++ F P L+ LN
Sbjct: 976 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLN 1034
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 219/388 (56%), Positives = 290/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 971 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 1030
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 1031 RESDLRHAMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 1089
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1090 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1149
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 1150 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 1208
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1209 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1268
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1269 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1327
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 1328 LEKYNF--PQMAHQKRFIERKYRQELKE 1353
Score = 123 (48.4 bits), Expect = 0.00093, P = 0.00092
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY FP EG V N+ +++ + + F
Sbjct: 961 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 1020
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFF-PRLQYFILN 374
P + DL+ A+ EA +GA+Y++ +E +Q F ++ F P L+ LN
Sbjct: 1021 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLREVWLN 1079
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 219/388 (56%), Positives = 290/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 616 GDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 675
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R + W+ YP HPLQ QE
Sbjct: 676 RESDLRHAMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLR-EVWLNYPLHPLQLQE 734
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 735 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 794
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 795 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRP 853
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 854 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 913
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 914 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 972
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 973 LEKYNF--PQMAHQKRFIERKYRQELKE 998
Score = 123 (48.4 bits), Expect = 0.00065, P = 0.00065
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-F 320
+ N+RLEFLGD V++ +TS +LY FP EG V N+ +++ + + F
Sbjct: 606 INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF 665
Query: 321 FANIINPKV----DLKMKDRADLLEAFLGAMYIDKGMEACEQ-FCKVCFF-PRLQYFILN 374
P + DL+ A+ EA +GA+Y++ +E +Q F ++ F P L+ LN
Sbjct: 666 MLYAHGPDLCRESDLRHA-MANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLREVWLN 724
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 219/388 (56%), Positives = 288/388 (74%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ +F+TS+HL+++FP +EEGGLATYR AIVQNQHLA LAK++ L+ FMLYAHG DLC
Sbjct: 934 GDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLC 993
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E +L+HAMANCFEAL+GA++L+G ++ A Q+F +L+ D ++R W+ YP HPLQ QE
Sbjct: 994 RESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLR-DVWLNYPLHPLQLQE 1052
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EFLG
Sbjct: 1053 SNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1112
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK---- 328
D+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM FA I N K
Sbjct: 1113 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRP 1171
Query: 329 VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQCC
Sbjct: 1172 VALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCC 1231
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
LTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA A
Sbjct: 1232 LTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDA 1290
Query: 449 LQKCPSICPQLDHQKRVIAKSIELQKHE 476
L+K PQ+ HQKR I + + E
Sbjct: 1291 LEKYNF--PQMAHQKRFIERKYRQELKE 1316
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 175/359 (48%), Positives = 241/359 (67%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HLF + EGGLATYR A+VQN++LA LA +++ + +AHG+DL
Sbjct: 675 GDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQFAHGADLI 734
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
+E E KHA+AN FEALM +FLD GI D +FS +Y KD E++ K W + +H L+ +
Sbjct: 735 NEAEWKHALANAFEALMAGVFLDSGIAPCDAIFSKAMYGKDPEMK-KVWDHLNEHELKIE 793
Query: 212 EPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFL 271
+P GDR +P L LE G+ FN+IRLLA+ FT R++ + +LT G NQRLE+L
Sbjct: 794 DPLGDRDLSRITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWL 853
Query: 272 GDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP-FFANIINPKVD 330
GD+VLQLI SDYLY +FP HHEGH V+N+TQSVVC+D+G F + K D
Sbjct: 854 GDSVLQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPHRKND 913
Query: 331 LKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLT 390
LKMKD+ADL+EAF+GA+Y+DKG+E C F + F PRL++FI +++WND KS LQQ CL
Sbjct: 914 LKMKDKADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLA 973
Query: 391 LRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
+R P +P Y+++ GPTN+R + VAVYF+ ERL+ A +++ AE+ AA+ AL
Sbjct: 974 IRDSRNPNPAMPEYRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAELKAAENAL 1032
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 167/364 (45%), Positives = 243/364 (66%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL
Sbjct: 697 GDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLI 756
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E KHA+AN FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++
Sbjct: 757 NVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKRED 816
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 817 PQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLG 876
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKV-DL 331
D+VLQLI SD+LY FP HHEGH V+N+TQ+VVC+D+G F K +L
Sbjct: 877 DSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPEL 936
Query: 332 KMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL 391
K+KD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL +
Sbjct: 937 KLKDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAM 996
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
R EPD+P Y+V+ GPTN+R + +AVY+K +RLA A +++ +AE+ A++AL
Sbjct: 997 RDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALAN 1056
Query: 452 CPSI 455
S+
Sbjct: 1057 LESM 1060
Score = 122 (48.0 bits), Expect = 0.00090, P = 0.00090
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVV---CN-DIGMPF 320
N+RLE+LGD V++LI S +LY H EG V NR + + C D + +
Sbjct: 690 NERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQY 749
Query: 321 F--ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN 378
A++IN + K A+ EA + A+Y+D G+ C+ + +L ++W+
Sbjct: 750 SHGADLINV-AEFKHA-LANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQP--VLKEKWD 805
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 167/364 (45%), Positives = 243/364 (66%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + I S HL+ + EGGLATYR A+VQN++LA LAK +++ + Y+HG+DL
Sbjct: 697 GDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYSHGADLI 756
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
+ E KHA+AN FEA+M A++LDGG+ D +FS +Y V ++W + +H L+ ++
Sbjct: 757 NVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLKEKWDHINEHELKRED 816
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P GDR +P L LE G+ FN+IRLLA+ FT R++ +LT G NQRLE+LG
Sbjct: 817 PQGDRDLSFITPTLSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLG 876
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKV-DL 331
D+VLQLI SD+LY FP HHEGH V+N+TQ+VVC+D+G F K +L
Sbjct: 877 DSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPEL 936
Query: 332 KMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTL 391
K+KD+ADL+EAF+GA+Y+D+G+E C F ++ F PRL++FI +++WND KS LQQ CL +
Sbjct: 937 KLKDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAM 996
Query: 392 RTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
R EPD+P Y+V+ GPTN+R + +AVY+K +RLA A +++ +AE+ A++AL
Sbjct: 997 RDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALAN 1056
Query: 452 CPSI 455
S+
Sbjct: 1057 LESM 1060
Score = 122 (48.0 bits), Expect = 0.00090, P = 0.00090
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 265 NQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVV---CN-DIGMPF 320
N+RLE+LGD V++LI S +LY H EG V NR + + C D + +
Sbjct: 690 NERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQY 749
Query: 321 F--ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN 378
A++IN + K A+ EA + A+Y+D G+ C+ + +L ++W+
Sbjct: 750 SHGADLINV-AEFKHA-LANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQP--VLKEKWD 805
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 150/270 (55%), Positives = 195/270 (72%)
Query: 211 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 270
QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EF
Sbjct: 3 QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEF 62
Query: 271 LGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK-- 328
LGD+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 63 LGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTK 121
Query: 329 --VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQ
Sbjct: 122 RPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQ 181
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA
Sbjct: 182 CCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAM 240
Query: 447 VALQKCPSICPQLDHQKRVIAKSIELQKHE 476
AL+K PQ+ HQKR I + + E
Sbjct: 241 DALEKYNF--PQMAHQKRFIEREYRQELKE 268
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 150/270 (55%), Positives = 195/270 (72%)
Query: 211 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 270
QEP+ DRQ +E SP+L++L E + GVIF H+RLLAR FT R++G+ +LTLG NQR+EF
Sbjct: 2 QEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEF 61
Query: 271 LGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPK-- 328
LGD+++QL+ ++YL+ HFP+HHEGH VNNRTQ+ V ++GM +A I N K
Sbjct: 62 LGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTK 120
Query: 329 --VDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQ 386
V L+ K ADLLE+F+ A+YIDK +E F VCFFPRL+ FILNQ+WNDPKS+LQQ
Sbjct: 121 RPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQ 180
Query: 387 CCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAK 446
CCLTLRT +G EPDIP+YK ++ VGP+++R+YTVAVYFK ER+ G SIQQAEM AA
Sbjct: 181 CCLTLRT-EGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAM 239
Query: 447 VALQKCPSICPQLDHQKRVIAKSIELQKHE 476
AL+K PQ+ HQKR I + + E
Sbjct: 240 DALEKYNF--PQMAHQKRFIERKYRQELKE 267
>ZFIN|ZDB-GENE-040808-25 [details] [associations]
symbol:tmem179 "transmembrane protein 179"
species:7955 "Danio rerio" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] ZFIN:ZDB-GENE-040808-25
GeneTree:ENSGT00510000048283 EMBL:BX255913 IPI:IPI00493746
Ensembl:ENSDART00000130095 Bgee:F1R6G8 Uniprot:F1R6G8
Length = 243
Score = 175 (66.7 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 35/111 (31%), Positives = 66/111 (59%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEAD---GQ--F 55
MA+ N L Q Y +A++ ++P++ + D+F+G CLLF+ G WQ + G+ F
Sbjct: 12 MAVDNFLF-GQCILYFLAFLFGFIAVVPLSENGDDFQGKCLLFTEGIWQNENMTMGKQRF 70
Query: 56 LVT-WASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHL 105
+V W ++ C + FVG+V ++S +Q +R + ++ KG++ S F + ++L
Sbjct: 71 IVEEWGPESSCRFITFVGIVSLILSAVQAWRTFFFLCKGHDDSLFHSFLNL 121
Score = 97 (39.2 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISETLKSQDNV 530
FG W+++ CW+GL V A LK+ H+ Q + S+ +E++ L+ L+ V
Sbjct: 185 FGLWSAWLCWLGLTVLAFLKVYHNHRQQELLESLVQEKELLLGHPLQRSSYV 236
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 222 (83.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 72/229 (31%), Positives = 111/229 (48%)
Query: 229 LQYLEYSSGVIFNHIRLL--ARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYN 286
L LE S GV F ++ LL A + T+ N GSN+R+EFLGD VL +I +D LY+
Sbjct: 4 LTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYH 63
Query: 287 HFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIIN----PKVDLKMKDRADLLEA 342
FP+ EG V + V I + + + K K + A EA
Sbjct: 64 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGAFEA 123
Query: 343 FLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIP 402
L A+Y+DKG++A + F ++ D KS+LQ+ L P
Sbjct: 124 VLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLT------P 177
Query: 403 IYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
Y++I+ GP ++ + VY +++ LA+ +G S ++AE +AAK ALQ+
Sbjct: 178 RYRIIDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226
Score = 141 (54.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 45/149 (30%), Positives = 75/149 (50%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKHA-MAN 163
L+H FPDI+EG L +R+ +V+ + L +A I L ++ G D + K A +A
Sbjct: 61 LYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGED-ASKGRFKPANLAG 119
Query: 164 CFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVE-Q 222
FEA++ A++LD GID +V L+K R + + + QE V+ Q
Sbjct: 120 AFEAVLAAIYLDKGIDATREVIFR-LFKTEMERVQTLSSNIDYKSRLQE------LVQAQ 172
Query: 223 SPLLKQLQYLEYSSGVIFNHIRLLARVFT 251
L + + +++S G NH+ +A V+T
Sbjct: 173 FQLTPRYRIIDFS-GPEHNHL-FIAEVYT 199
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 221 (82.9 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 66/221 (29%), Positives = 105/221 (47%)
Query: 237 GVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEG 294
G+ F +LL + FT S + N+RLEFLGD VL+L S YL+ +P EG
Sbjct: 27 GITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEG 86
Query: 295 HXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYID 350
V + N++ + + ++R AD+ EAF+GA+Y+D
Sbjct: 87 ELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLD 146
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+G+E F K +P++ + D KS+LQ+ L R G +I Y++++
Sbjct: 147 QGLETVWGFLKEIVYPKINEGAFSHVM-DYKSQLQE--LIQRD---GSGNIE-YQILQEK 199
Query: 411 GPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
GP ++R + V N L +G S ++AE AA AL+K
Sbjct: 200 GPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 47/157 (29%), Positives = 71/157 (45%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF +P + EG L RAAIV L A + +L G ++
Sbjct: 64 GDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMT 123
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLY-KDNEVRFKQWMYYPQHPLQEQ 211
E +A+ FEA +GAL+LD G++ ++Y K NE F M Y LQE
Sbjct: 124 GGRERPALLADVFEAFIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQ-LQEL 182
Query: 212 -EPDGDRQWVEQSPLLKQ--LQYLEYSSGVIFNHIRL 245
+ DG +E L ++ E+ S V N++ L
Sbjct: 183 IQRDGSGN-IEYQILQEKGPAHNREFVSRVTLNNVAL 218
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 216 (81.1 bits), Expect = 7.1e-17, P = 7.1e-17
Identities = 67/220 (30%), Positives = 103/220 (46%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHX 296
G FN LL + T RS + N+RLEFLGD++L + ++ LY+ FP+H EG
Sbjct: 16 GYEFNEPLLLVQALTHRSAKGAH-----NERLEFLGDSILGFVIAEALYDKFPKHDEGDL 70
Query: 297 XXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR------ADLLEAFLGAMYID 350
V T + V D + I+ P +LK D +EA +GA+Y+D
Sbjct: 71 TRMRSSLVKGVTLAEVARDFNLGECL-ILGPG-ELKSGGHHRESILEDAIEAIIGAVYLD 128
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+E C+ F RL E DPK++LQ+ L G + +P Y+VI+
Sbjct: 129 SNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEF------LQGRKIPLPTYEVIDTT 182
Query: 411 GPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVAL 449
G ++++ +TV + A G S ++AE AA+ L
Sbjct: 183 GQSHNQEFTVRCQTSVISEVVIAKGTSRRKAEQEAAQQIL 222
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 215 (80.7 bits), Expect = 9.1e-17, P = 9.1e-17
Identities = 64/233 (27%), Positives = 114/233 (48%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K ++ LE S F LL T +S + +N+RLEFLGD VL L+ +YL+
Sbjct: 1 MKNIEKLERSLTYEFKDKNLLIHALTHKSFKKSY----NNERLEFLGDAVLDLVVGEYLF 56
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP--FFANIINPKVDLKMKDR--ADLLE 341
+ F + EG VN ++ + + N + + F ++ + K +D LE
Sbjct: 57 HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALE 116
Query: 342 AFLGAMYIDKGMEACEQFCKVCF---FPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGE 398
A +GA++++ G E + FP++ IL +++ K+KLQ+ +T G
Sbjct: 117 AIIGAIHLEAGFEFTKTIALRLIEKNFPQIDAKILIKDY---KTKLQE--IT----QGKI 167
Query: 399 PDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
P Y+ + GP + + + +A+ + LA+A S ++A+ AAK+AL+K
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEK 220
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 214 (80.4 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 66/225 (29%), Positives = 107/225 (47%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG--SNQRLEFLGDTVLQLITSDYLYNHFP 289
LE G FN+ +L T S + + G N+RLEFLGD VL+L SDYL+ FP
Sbjct: 9 LEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFP 68
Query: 290 EHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKV----DLKMKDRADLLEAFLG 345
+ EG V + + I + F + + + +M + A+ +EA +G
Sbjct: 69 QKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLANAVEAVIG 128
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
A+Y D G+EA F + +L+ L Q D K+ LQ+ L + ++ Y+
Sbjct: 129 AVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQEL------LQKEKNNVLRYE 182
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ 450
++ GP + + +T V ++ +A G S ++AE AAK AL+
Sbjct: 183 ILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALE 227
Score = 114 (45.2 bits), Expect = 0.00057, P = 0.00057
Identities = 44/162 (27%), Positives = 78/162 (48%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S +LF FP EG L R+ +V + L LA +I L+ F+ G
Sbjct: 51 GDAVLELFISDYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKA 110
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA----DQVFSSVLYKDN-EVRFKQWMYYPQHP 207
+ +AN EA++GA++ D GI+ A +++ L +N E K Q
Sbjct: 111 GGNQRMSNLANAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQEL 170
Query: 208 LQEQEPDGDRQWV--EQSPLLKQLQYLEYSSGVIFNHIRLLA 247
LQ+++ + R + E+ P +++ +++GVI N +L+A
Sbjct: 171 LQKEKNNVLRYEILLEEGPPHQKI----FTAGVIIND-KLIA 207
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 209 (78.6 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 66/226 (29%), Positives = 98/226 (43%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSM--GYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFP 289
LE S G F R L T RS + T+ N+RLEF GD +L L H+P
Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78
Query: 290 EHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDR----ADLLEAFLG 345
E EG V T + + + + + + + + R A+ LEA L
Sbjct: 79 ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
AMY+D GM E+ F PRL + D K+ Q+ + GG +P Y
Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKTDFQELA---QAQYGG---LPRYV 192
Query: 406 VIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+++ GP + +TVA Y L + TG S ++AE AA+ L++
Sbjct: 193 LVDTSGPAHDLRFTVAAYVGERLLGQGTGRSKKEAEQAAARQCLER 238
>UNIPROTKB|I3L9L1 [details] [associations]
symbol:I3L9L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR011907 GO:GO:0003723 GO:GO:0010586 GO:GO:0031054
GO:GO:0016075 GO:GO:0004525 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 Ensembl:ENSSSCT00000024085
Uniprot:I3L9L1
Length = 45
Score = 202 (76.2 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 36/44 (81%), Positives = 41/44 (93%)
Query: 362 VCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
VCFFPRL+ FILNQ+WNDPKS+LQQCCLTLRT +G EPDIP+YK
Sbjct: 3 VCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT-EGKEPDIPLYK 45
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 194 (73.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 62/222 (27%), Positives = 100/222 (45%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHX 296
G F LL T RS + N+RLEFLGD++L + +D LY FP+ +EG
Sbjct: 13 GYTFKETELLNLALTHRSANGKH-----NERLEFLGDSILSFVIADELYRRFPKVNEGDM 67
Query: 297 XXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKM----KDR--ADLLEAFLGAMYID 350
V T + + + + + + P +LK +D AD +EA +GA+Y+D
Sbjct: 68 SRMRATLVRGNTLAELGREFDLGDYLKL-GPG-ELKSGGFRRDSILADAVEAIIGAIYLD 125
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+E + RL+ DPK++LQ+ L G +P+Y V
Sbjct: 126 SDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEF------LQGRRKPLPVYTVTNIK 179
Query: 411 GPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
G +++ +TVA + G S ++AE AA+ AL++
Sbjct: 180 GEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+ FP + EG ++ RA +V+ LA L + L D++ G
Sbjct: 43 GDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+A+ EA++GA++LD ++ A +
Sbjct: 103 GGFRRDSILADAVEAIIGAIYLDSDLETARSI 134
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 194 (73.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 62/222 (27%), Positives = 100/222 (45%)
Query: 237 GVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHX 296
G F LL T RS + N+RLEFLGD++L + +D LY FP+ +EG
Sbjct: 13 GYTFKETELLNLALTHRSANGKH-----NERLEFLGDSILSFVIADELYRRFPKVNEGDM 67
Query: 297 XXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKM----KDR--ADLLEAFLGAMYID 350
V T + + + + + + P +LK +D AD +EA +GA+Y+D
Sbjct: 68 SRMRATLVRGNTLAELGREFDLGDYLKL-GPG-ELKSGGFRRDSILADAVEAIIGAIYLD 125
Query: 351 KGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHV 410
+E + RL+ DPK++LQ+ L G +P+Y V
Sbjct: 126 SDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEF------LQGRRKPLPVYTVTNIK 179
Query: 411 GPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
G +++ +TVA + G S ++AE AA+ AL++
Sbjct: 180 GEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ F+ + L+ FP + EG ++ RA +V+ LA L + L D++ G
Sbjct: 43 GDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKS 102
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+A+ EA++GA++LD ++ A +
Sbjct: 103 GGFRRDSILADAVEAIIGAIYLDSDLETARSI 134
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 193 (73.0 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 64/231 (27%), Positives = 110/231 (47%)
Query: 228 QLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNH 287
+L+ L+ GV F + LL T S+ S +RLEFLGD VL L+ + LY+
Sbjct: 2 ELEELQSLLGVYFKNKDLLVEALTHPSVE----KCPSYERLEFLGDAVLNLVIASMLYDL 57
Query: 288 FPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRA----DLLEAF 343
FP EG + T +++ + + + + + + +D+ ++LEA
Sbjct: 58 FPGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEAL 117
Query: 344 LGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWN---DPKSKLQQCCLTLRTLDGGEPD 400
+GA+++D G+E CF + Y + Q + +PKS LQ+ L G +P
Sbjct: 118 VGAIFLDAGLETV-----TCFIKKRWYGLAVQSDSIEPNPKSTLQE----LLQAKGMKP- 167
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
PIY VI GP + + + + ++ +ATG S + E NAA++ L++
Sbjct: 168 -PIYNVINRSGPAHLPIFEIEIRVDGKK-RRATGKSKKLGEENAARMMLEE 216
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 190 (71.9 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 61/227 (26%), Positives = 104/227 (45%)
Query: 232 LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEH 291
L+ G FNH LL + T RS + N+RLEFLGD++L + ++ LY+ FP
Sbjct: 9 LQRKLGYTFNHQELLQQALTHRSASSKH-----NERLEFLGDSILSYVIANALYHRFPRV 63
Query: 292 HEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKM----KDR--ADLLEAFLG 345
EG V T + + + + + P +LK ++ AD +EA +G
Sbjct: 64 DEGDMSRMRATLVRGNTLAELAREFELGECLRL-GPG-ELKSGGFRRESILADTVEALIG 121
Query: 346 AMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYK 405
+++D ++ E+ + RL + DPK++LQ+ L G +P Y
Sbjct: 122 GVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEY------LQGRHLPLPTYL 175
Query: 406 VIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQK 451
V++ G + + +T+ TG+S ++AE AA+ AL+K
Sbjct: 176 VVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ ++ + L+H FP ++EG ++ RA +V+ LA LA+ L + + G
Sbjct: 44 GDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKS 103
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ +A+ EAL+G +FLD I +++
Sbjct: 104 GGFRRESILADTVEALIGGVFLDSDIQTVEKL 135
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 186 (70.5 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 64/232 (27%), Positives = 107/232 (46%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+K L L + G F ++ LL + T RS + N+RLEFLGD++L ++ SD LY
Sbjct: 4 IKNLPRLCRTLGYEFKNLDLLTQALTHRSAANKH-----NERLEFLGDSILSIVISDALY 58
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKVDLKM----KDR--ADL 339
+ FP+ EG V T +++ + + + P +LK ++ AD
Sbjct: 59 HQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYL-FLGPG-ELKSGGFRRESILADA 116
Query: 340 LEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEP 399
+EA +GA+Y+D +E C Q + RL D K+ LQ+ L G +
Sbjct: 117 VEAIIGAIYLDSDLEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEY------LQGLKK 170
Query: 400 DIPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P Y+VI G + +++TV + + +S ++AE AA L+
Sbjct: 171 PLPDYQVINIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLE 222
Score = 117 (46.2 bits), Expect = 0.00023, P = 0.00023
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + S L+H FP EG L+ RA +V+ L +A+ L D++ G
Sbjct: 45 GDSILSIVISDALYHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKS 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQV 184
+ +A+ EA++GA++LD ++V Q+
Sbjct: 105 GGFRRESILADAVEAIIGAIYLDSDLEVCRQL 136
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 183 (69.5 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 69/231 (29%), Positives = 107/231 (46%)
Query: 226 LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLY 285
+ L L G FN++ LL T S G N N+RLEFLGD+VL I + LY
Sbjct: 1 MNHLNKLMERLGHQFNNLELLKIALTHCSSGADN-----NERLEFLGDSVLGFIIASELY 55
Query: 286 NHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANI-INPKVDLKMKDR---ADLLE 341
P+ EG VN + + +G+ + + + + + R AD LE
Sbjct: 56 QRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALE 115
Query: 342 AFLGAMYIDKGMEACEQFCKVCFF-PRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
A +GA+YID G+E C + C + ++ R+ D KS LQ+ L R L P
Sbjct: 116 AIVGAIYIDAGLETCRR-CVLNWYGERVDDLSKLSPKKDAKSLLQEW-LQARRL----P- 168
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKN-ERLAKATGNSIQQAEMNAAKVALQ 450
+P Y+V + G +++++TV Y K + + ++AE AAK L+
Sbjct: 169 LPTYEV-KITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 22/87 (25%), Positives = 47/87 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ FI + L+ P EG L+ RA++V LA ++ ++G+ +++ G
Sbjct: 42 GDSVLGFIIASELYQRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKS 101
Query: 153 HEVELKHAMANCFEALMGALFLDGGID 179
+ +A+ EA++GA+++D G++
Sbjct: 102 GGKRRRSILADALEAIVGAIYIDAGLE 128
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 182 (69.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 61/217 (28%), Positives = 101/217 (46%)
Query: 240 FNHIRLLARVFTTRSMGYTNLTLGSN-QRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXX 298
F + +LL T S+ + TL N +RLEFLGD VL ++ S+ L+N FP+ EG+
Sbjct: 13 FKNPQLLNEALTHPSL-VSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPKDTEGNLAK 71
Query: 299 XXXXXVNNRTQSVVCNDIGMPFFANIINPKVDL----KMKDRADLLEAFLGAMYIDKGME 354
V V I + F + + + ++ + LEA +GA+Y+D G
Sbjct: 72 KKTALVCGNKLVEVAQSINLGQFIMMSDGERACGGINNFRNLENALEALIGAIYLDGGFT 131
Query: 355 ACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTN 414
A + F + F +N D K+ LQ+ + G P Y I+ GP +
Sbjct: 132 AAQDF--IYLFWEHSATHMNVPPQDAKTILQEL------VQGKRLPAPAYHTIDKSGPDH 183
Query: 415 SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
+ ++TV V + + +ATG++ + AE AA + L +
Sbjct: 184 NPTFTVEVRIPSYQAIQATGHNKKLAEQKAASLMLNQ 220
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G+ + S LF++FP EG LA + A+V L +A+ I L F++ + G C
Sbjct: 45 GDAVLNIVISEMLFNIFPKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGERAC 104
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVA 181
+ + N EAL+GA++LDGG A
Sbjct: 105 GGINNFRNLENALEALIGAIYLDGGFTAA 133
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 182 (69.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 62/211 (29%), Positives = 92/211 (43%)
Query: 245 LLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXV 304
LL+ T RS Y N L +N+RLEFLGD VL L +D L++ P+ EG V
Sbjct: 20 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 79
Query: 305 NNRTQSVVCNDI---GMPFFANIINPKVDLKMKDR----ADLLEAFLGAMYIDKGMEACE 357
N + + V + G+ + + + D+ AD +E+ LGA+Y+ GME
Sbjct: 80 NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAR 139
Query: 358 QFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRS 417
+ F P L D K+ LQ+ R L G P Y ++ GP + +
Sbjct: 140 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA-RGL--GAPS---Y-LVTSTGPDHDKE 192
Query: 418 YTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
+T V + G S ++AE AA A
Sbjct: 193 FTAVVVVMDSEYGSGVGRSKKEAEQKAAAAA 223
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 105 LFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRI---GLEDFMLYAHGSDLCHEVELKHAM 161
LFH PD EG LA RA++V Q LA +A+R+ GL +L G + +
Sbjct: 59 LFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSIL 118
Query: 162 ANCFEALMGALFLDGGIDVADQV 184
A+ E+L+GA++L G++ A +V
Sbjct: 119 ADGMESLLGAIYLQHGMEKAREV 141
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 176 (67.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 67/223 (30%), Positives = 102/223 (45%)
Query: 236 SGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGH 295
SG F LL T S+ S +RLEFLGD VL L+ S+ LY FP+ EG
Sbjct: 20 SGYRFQDHELLKTAVTHPSIAAERYA--SYERLEFLGDAVLGLVVSEMLYTLFPDDSEGL 77
Query: 296 XXXXXXXXVNNRTQSVVCNDIGMPFFANII-NPKVDLK---MKDRADL---LEAFLGAMY 348
V + + + NI+ K +L + + ++L LEA +GA+Y
Sbjct: 78 LTKKRIALVRGSKVVEIAQSLNL---GNILLMSKGELTSGGISNNSNLENALEALIGAIY 134
Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIE 408
+D G+E+ F + P L + + D K+ LQ+ G IP Y++I
Sbjct: 135 VDGGLESVRHFILQHWKP-LATNLADTPLQDAKTALQEWA------QGHNFAIPSYRLIN 187
Query: 409 HVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
G ++ +TV V +R+ ATG + AE+ AAK+ L+K
Sbjct: 188 KSGLEHAPVFTVEVTVNGQRV-HATGCKKKYAEIAAAKLMLEK 229
Score = 115 (45.5 bits), Expect = 0.00044, P = 0.00044
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 100 ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVELKH 159
+ S L+ +FPD EG L R A+V+ + +A+ + L + +L + G +
Sbjct: 61 VVSEMLYTLFPDDSEGLLTKKRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISNNS 120
Query: 160 AMANCFEALMGALFLDGGID 179
+ N EAL+GA+++DGG++
Sbjct: 121 NLENALEALIGAIYVDGGLE 140
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 157 (60.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 40/120 (33%), Positives = 65/120 (54%)
Query: 262 LGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFF 321
LG NQRLEFLGD+VL+L+++ YL+ +P+ EG N V +G+
Sbjct: 1091 LGDNQRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEI 1150
Query: 322 ANIINPKVDLKMKDRADLLEAFLGAMYIDKGM-EACE-QFCKVCFFPRLQYFILNQEWND 379
+ + + K +AD++EA +GA+YID+G EA + C + P +Y I N ++ +
Sbjct: 1151 LRFTTEE-EFR-KPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFEE 1208
Score = 138 (53.6 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 38/147 (25%), Positives = 74/147 (50%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++ + +++I+LF +P + EG L+ R+ +N HL ++KR+GLE+ + +
Sbjct: 1101 GDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILRFTT----- 1155
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQE 212
E E + A+ EAL+GA+++D G A ++ ++ + + + + + L QE
Sbjct: 1156 -EEEFRKPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFEETLAHQE 1214
Query: 213 P----DGDRQWVEQSPLLKQLQYLEYS 235
DG + S LL++ YS
Sbjct: 1215 IRAFLDGIGVHISHSSLLEEALCFPYS 1241
Score = 120 (47.3 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 29/87 (33%), Positives = 42/87 (48%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFAN 323
S QRLE++GD VL SD+LY FP EG V N S + + +P +
Sbjct: 1248 SYQRLEYVGDAVLDFFVSDFLYATFPLAQEGQLTDYRSRLVRNSNLSSISRKLCLPPTVS 1307
Query: 324 IINPKVDLKMKDRADLLEAFLGAMYID 350
+ L +K D LE+F+G ++D
Sbjct: 1308 K-GIRDTLPIKKLGDYLESFIGCCFVD 1333
Score = 39 (18.8 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 70 FVGVVLFVISVIQIYRMYMYIHKGN--NFSQFI 100
F+ ++ + + + + Y H+G +FS F+
Sbjct: 576 FISFYVYDVVISHPFHAHTYSHRGKKYSFSNFL 608
>UNIPROTKB|Q6ZVK1 [details] [associations]
symbol:TMEM179 "Transmembrane protein 179" species:9606
"Homo sapiens" [GO:0016021 "integral to membrane" evidence=IEA]
GO:GO:0016021 EMBL:AK124477 EMBL:BX927359 IPI:IPI00399003
IPI:IPI00788838 RefSeq:NP_997262.1 UniGene:Hs.655004
ProteinModelPortal:Q6ZVK1 STRING:Q6ZVK1 PhosphoSite:Q6ZVK1
DMDM:126229230 PRIDE:Q6ZVK1 DNASU:388021 Ensembl:ENST00000341595
Ensembl:ENST00000556573 GeneID:388021 KEGG:hsa:388021
UCSC:uc001yox.1 CTD:388021 GeneCards:GC14M104941
GeneCards:GC14M105061 HGNC:HGNC:20137 HPA:HPA002942
neXtProt:NX_Q6ZVK1 PharmGKB:PA162405995 eggNOG:NOG43272
HOGENOM:HOG000118361 HOVERGEN:HBG100854 OMA:VCYFLAF
OrthoDB:EOG40VVQJ GenomeRNAi:388021 NextBio:101803 Bgee:Q6ZVK1
CleanEx:HS_TMEM179 Genevestigator:Q6ZVK1 Uniprot:Q6ZVK1
Length = 233
Score = 145 (56.1 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 33/120 (27%), Positives = 64/120 (53%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEAD------GQ 54
MA+ N L +Q A Y +A++ S +++P++ + +F+G CLLF+ G W A+ +
Sbjct: 1 MALNNFLF-AQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERER 59
Query: 55 FLVT-WASQAYCNYTIFVGVVLFVISVIQIYRMYMYI---HKGNNFSQFITS-IHLFHVF 109
F V W A C +++ ++ +++ +R ++ H+G+ FS F+ + F VF
Sbjct: 60 FTVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVF 119
Score = 68 (29.0 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLIS 521
FG WAS+ W+ + A LK+ ++ +++ S+ E++ L++
Sbjct: 175 FGLWASWLAWLAITTLAFLKVYHNYRQEDLLDSLIHEKELLLA 217
>MGI|MGI:2144891 [details] [associations]
symbol:Tmem179 "transmembrane protein 179" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
MGI:MGI:2144891 GO:GO:0016021 CTD:388021 eggNOG:NOG43272
HOGENOM:HOG000118361 HOVERGEN:HBG100854 OMA:VCYFLAF
OrthoDB:EOG40VVQJ EMBL:AK044254 EMBL:AK049973 EMBL:AK090230
EMBL:BC046482 EMBL:BC055014 IPI:IPI00798553 RefSeq:NP_849246.2
UniGene:Mm.37751 ProteinModelPortal:Q8BHH9 STRING:Q8BHH9
PhosphoSite:Q8BHH9 PRIDE:Q8BHH9 Ensembl:ENSMUST00000066791
GeneID:104885 KEGG:mmu:104885 UCSC:uc007per.1
GeneTree:ENSGT00510000048283 InParanoid:Q8BHH9 ChiTaRS:TMEM179
NextBio:357350 Bgee:Q8BHH9 CleanEx:MM_TMEM179 Genevestigator:Q8BHH9
GermOnline:ENSMUSG00000054013 Uniprot:Q8BHH9
Length = 233
Score = 139 (54.0 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 30/112 (26%), Positives = 60/112 (53%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQEAD----GQ-- 54
MA+ N L +Q Y +A++ S +++P++ + +F+G CLLF+ G W A+ G+
Sbjct: 1 MALNNFLF-AQCVCYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTMQGRER 59
Query: 55 FLVT-WASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNNFSQFITSIHL 105
F V W A C +++ ++ +++ +R ++ KG+ S F ++L
Sbjct: 60 FTVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFYAFLNL 111
Score = 68 (29.0 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 479 FGAWASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLIS 521
FG WAS+ W+ + A LK+ ++ +++ S+ E++ L++
Sbjct: 175 FGLWASWLAWLAITTLAFLKVYHNYRQEDLLDSLVHEKELLLA 217
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 181 (68.8 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 70/284 (24%), Positives = 122/284 (42%)
Query: 82 QIYRMYMYIHK-----GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 136
Q YR +M ++ G++ + +S++LF F + EG L+ R +N++L L++R
Sbjct: 916 QSYRPFMKDYQRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRR 975
Query: 137 IGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEV 195
IG + + D H HA + EA +GA++++ G D D + + DN
Sbjct: 976 IGFDYILRITTIGD--HSKP--HA--DLIEAFIGAIYIECGFKDSFDWIIKWIF--DNSY 1027
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY---LEYSSGVIFNHI--RLLARVF 250
Y + + D + + L+ Y +Y + FN L++
Sbjct: 1028 YGSDNKIYGGGGGGSEINNNDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDH 1087
Query: 251 TTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQS 310
+ N T ++RLEFLGD VL I +DYL++ + E EG+ VNN S
Sbjct: 1088 FYSNQNNNNNT-NFSERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLS 1146
Query: 311 VVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGME 354
+ F + + +K D +E+++G Y+ G E
Sbjct: 1147 KILKSNKNIFSPSQQDSFKHFSVKRMGDHIESYIGGFYLKFGFE 1190
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 181 (68.8 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 70/284 (24%), Positives = 122/284 (42%)
Query: 82 QIYRMYMYIHK-----GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKR 136
Q YR +M ++ G++ + +S++LF F + EG L+ R +N++L L++R
Sbjct: 916 QSYRPFMKDYQRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRR 975
Query: 137 IGLEDFMLYAHGSDLCHEVELKHAMANCFEALMGALFLDGGI-DVADQVFSSVLYKDNEV 195
IG + + D H HA + EA +GA++++ G D D + + DN
Sbjct: 976 IGFDYILRITTIGD--HSKP--HA--DLIEAFIGAIYIECGFKDSFDWIIKWIF--DNSY 1027
Query: 196 RFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQY---LEYSSGVIFNHI--RLLARVF 250
Y + + D + + L+ Y +Y + FN L++
Sbjct: 1028 YGSDNKIYGGGGGGSEINNNDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDH 1087
Query: 251 TTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQS 310
+ N T ++RLEFLGD VL I +DYL++ + E EG+ VNN S
Sbjct: 1088 FYSNQNNNNNT-NFSERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLS 1146
Query: 311 VVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMYIDKGME 354
+ F + + +K D +E+++G Y+ G E
Sbjct: 1147 KILKSNKNIFSPSQQDSFKHFSVKRMGDHIESYIGGFYLKFGFE 1190
>ZFIN|ZDB-GENE-060929-752 [details] [associations]
symbol:zgc:153018 "zgc:153018" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] ZFIN:ZDB-GENE-060929-752 HOGENOM:HOG000118361
HOVERGEN:HBG100854 GeneTree:ENSGT00510000048283 EMBL:CR847510
EMBL:BC124211 IPI:IPI00806532 RefSeq:NP_001070107.1
UniGene:Dr.105655 Ensembl:ENSDART00000090844 GeneID:767701
KEGG:dre:767701 eggNOG:NOG121256 InParanoid:Q08CJ8 OMA:FKGRCAL
OrthoDB:EOG47WNPX NextBio:20918089 Uniprot:Q08CJ8
Length = 248
Score = 148 (57.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 35/116 (30%), Positives = 60/116 (51%)
Query: 1 MAITNILLLSQIAGYVIAWMLSLCIIIPMTLHQDEFKGHCLLFSTGAWQE-----ADGQ- 54
M + LLL+ A + ++ + L +++P+ L+ FKG C LFS G W+ A+G+
Sbjct: 1 MELDRRLLLAHCAAHTLSVLAGLMVVVPLALNGSAFKGRCALFSQGFWRMENLTVAEGET 60
Query: 55 ----FLVT--WASQAYCNYTIFVGVVLFVISVIQIYRMYMYIHKGNN---FSQFIT 101
LV W A C + FVG+ + +Q +R + Y+H+ ++ FS F+T
Sbjct: 61 REVSHLVVQQWGPPAACQFATFVGMFSVLYGAVQGWRSFFYLHRRHDDTLFSAFLT 116
Score = 52 (23.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 482 WASFSCWVGLGVCALLKLCRYHQIQNMRVSMYRERQNLISE 522
W + W+ + + L+L H Q R + RE++ L+ +
Sbjct: 184 WCVTALWLAQSILSFLRLYHSHSQQISRPCISREKELLLGQ 224
>TIGR_CMR|SPO_3198 [details] [associations]
symbol:SPO_3198 "ribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR
TIGRFAMs:TIGR02191 RefSeq:YP_168401.1 ProteinModelPortal:Q5LNK5
GeneID:3195258 KEGG:sil:SPO3198 PATRIC:23379843
ProtClustDB:CLSK934087 Uniprot:Q5LNK5
Length = 225
Score = 153 (58.9 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 60/229 (26%), Positives = 98/229 (42%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L +++ E G F LL R T S+ ++ T NQRLEFLGD VL L+ + L
Sbjct: 3 LSAEMKAFEARLGYSFERPELLVRALTHGSI--SSSTRQDNQRLEFLGDRVLGLVMATAL 60
Query: 285 YNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKV----DLKMKDRADLL 340
+ EG V T + V + + + ++ K+ D +
Sbjct: 61 LEADKDATEGQLAPRFNALVRKETCAEVAREADLGAVLKLGRSEMMSGGRRKLALLGDAM 120
Query: 341 EAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCCLTLRTLDGGEPD 400
EA + A+Y D G A E + R+ + + D K+ LQ+ G P
Sbjct: 121 EAVIAAVYRDGGFAAAEAVILRLWGARVHQ--VEADARDAKTALQEWAQAR----GQTP- 173
Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVAL 449
P Y++++ GP ++ +T+ + R A+AT + +QAE AA+ L
Sbjct: 174 -PRYELVKRSGPDHAPVFTILAELADGRRAEATAGAKRQAEQAAARKLL 221
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 162 (62.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 73/277 (26%), Positives = 112/277 (40%)
Query: 84 YRMYMYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 143
Y+ Y + G++ +F + LF+ P+ EG L A+VQN L A GL+ ++
Sbjct: 908 YQRYEFF--GDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYI 965
Query: 144 ------------------LYAHGSDLCHEVELKHAMANCFEALMGALFLDGGIDVADQVF 185
LYA S + K +A+ EAL+GA ++DGG+ A
Sbjct: 966 ISNRFTPRKWSAPLISEKLYASAST--RSMSAK-VLADVVEALIGAAYIDGGLHKAQSCI 1022
Query: 186 SSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRL 245
VRF + P+ L E + P L Q + LE G F L
Sbjct: 1023 ---------VRFLPEIELPETKLPRPE-SMPMSKDHKKPHLIQQENLENHIGYTFKDKTL 1072
Query: 246 LARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVN 305
L T S Y + ++ S QRLEFLGD VL ++ D + H E +G VN
Sbjct: 1073 LMEALTHPSCPY-DTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIKHAIVN 1131
Query: 306 NRTQSVVCNDI--GMPFFANIINPKVDLKMKDRADLL 340
+ +C MP + + P +D + +++
Sbjct: 1132 GHLLAFLCMQFKWAMP---SPLTPSIDTGTETETEII 1165
Score = 54 (24.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 337 ADLLEAFLGAMYIDKG--MEACEQFCKVCFFPRLQYFILNQ 375
+D++E+ +GA+++D G + AC F + R+ IL++
Sbjct: 1235 SDVVESIIGAIFVDSGGDLGACAGFIERLGLVRIAKRILDE 1275
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 97 (39.2 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 28/94 (29%), Positives = 40/94 (42%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PD D+ + L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 551 PDADKTL---NHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLG 606
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
D +L + + +LY +H G VNN
Sbjct: 607 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 640
Score = 80 (33.2 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 699 DIEVPKAMGDIFESLAGAIYMDSGM-SLETVWQV-YYPMMRPLIEKFSANVPRSPVREL- 755
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 756 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 806
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 807 LRSLKANQPQV 817
Score = 77 (32.2 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 217 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 268
Score = 41 (19.5 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 456 SIADCVEALLGCYLTSCG-ERAAQLF 480
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 108 (43.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 44/159 (27%), Positives = 67/159 (42%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVFS-----SVLYKDN-------EVRFKQWMYYPQHP 207
++A+C EAL+G G + A Q+F VL + E+++ W+ P
Sbjct: 1534 SIADCVEALLGCYLTSCG-ERAAQLFLCSLGLKVLPPEKQSSGGSAELQYG-WLKIPPRC 1591
Query: 208 LQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQR 267
+ E PD +R + L+ E F + L + FT S Y +T QR
Sbjct: 1592 MFEH-PDAERTL---NHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTIT-DCYQR 1646
Query: 268 LEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
LEFLGD +L + + +LY +H G VNN
Sbjct: 1647 LEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 1685
Score = 81 (33.6 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 36/133 (27%), Positives = 64/133 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1744 DIEVPKAMGDIFESLAGAIYMDSGM-SLETVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1800
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1801 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1851
Query: 449 LQKCPSICPQLDH 461
L+ + PQ+ +
Sbjct: 1852 LRSLKANQPQVQN 1864
Score = 77 (32.2 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1301 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1352
>POMBASE|SPBC119.11c [details] [associations]
symbol:pac1 "double-strand-specific ribonuclease Pac1"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016180
"snRNA processing" evidence=IMP] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IMP] [GO:0032296
"double-stranded RNA-specific ribonuclease activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 PomBase:SPBC119.11c InterPro:IPR014720 GO:GO:0007126
GO:GO:0005730 GO:GO:0046872 EMBL:CU329671 Gene3D:3.30.160.20
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 GO:GO:0031137 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 PANTHER:PTHR11207 GO:GO:0032296 GO:GO:0016180
EMBL:X54998 EMBL:X53769 EMBL:S78982 EMBL:AY695821 EMBL:AY695822
PIR:S12605 RefSeq:NP_595292.1 ProteinModelPortal:P22192
STRING:P22192 EnsemblFungi:SPBC119.11c.1 GeneID:2540084
KEGG:spo:SPBC119.11c KO:K03685 OMA:PKIANIT OrthoDB:EOG40ZV6Z
NextBio:20801221 GermOnline:SPBC119.11c Uniprot:P22192
Length = 363
Score = 152 (58.6 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 64/268 (23%), Positives = 114/268 (42%)
Query: 191 KDNEVRFKQWMYYPQHPLQEQ--EPDGDR-QWVEQSPLLKQLQYLEYSSGVIFNHIRLLA 247
+ NE ++ +P++ ++ EP + + E P L L+ E +F HI
Sbjct: 96 RQNEPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPPPLPPLRS-EKLKEQVFMHISRAY 154
Query: 248 RVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNR 307
++ +S L + N+RLEFLGD+ L T+ +++ FP+ EG V N
Sbjct: 155 EIYPNQSNPNELLDI-HNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNE 213
Query: 308 TQSVVCNDIGMP--FFANIINPKVDLKMKDR--ADLLEAFLGAMYIDKGMEACEQFCKVC 363
+ G + K L+ + AD EA+LGA+ +D E Q+
Sbjct: 214 SADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSRL 273
Query: 364 FFPRLQYFILNQEWND-PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAV 422
P++ + + + KSKL TL ++ Y+ ++ G + + Y +A
Sbjct: 274 LQPKIANITVQRPIDKLAKSKLFHKYSTLGHIE--------YRWVDGAGGS-AEGYVIAC 324
Query: 423 YFKNERLAKATGNSIQQAEMNAAKVALQ 450
F + +A+A G + + A AA AL+
Sbjct: 325 IFNGKEVARAWGANQKDAGSRAAMQALE 352
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLC 152
G++F T+ +F FP ++EG L+ RA V N+ A+ G + ++ ++ ++
Sbjct: 178 GDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKD 237
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
+ + +A+ FEA +GAL LDG + A Q S +L
Sbjct: 238 QLRKSQKVIADTFEAYLGALILDGQEETAFQWVSRLL 274
>CGD|CAL0001312 [details] [associations]
symbol:DCR1 species:5476 "Candida albicans" [GO:0004525
"ribonuclease III activity" evidence=TAS] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=TAS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0006325 "chromatin organization" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0030847 "termination of RNA polymerase II
transcription, exosome-dependent" evidence=IEA] [GO:0034475 "U4
snRNA 3'-end processing" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720 CGD:CAL0001312
GO:GO:0005737 GO:GO:0046872 GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0030422 GO:GO:0016075
GO:GO:0019843 EMBL:AACQ01000057 GO:GO:0006364 GO:GO:0004525
GO:GO:0035196 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 GO:GO:0003968 RefSeq:XP_717201.1
ProteinModelPortal:Q5A694 STRING:Q5A694 GeneID:3641164
KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 156 (60.0 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 63/252 (25%), Positives = 117/252 (46%)
Query: 241 NHIRLLARVF----TTRSMGY--TNLTLGS-NQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
N +L RVF T + Y N L S N+RLEF GD++L + + ++ FP+ E
Sbjct: 243 NDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302
Query: 294 GHXXXXXXXXVNNRTQSVVCNDIGMPF-FANIINPKVDLKMKDR---ADLLEAFLGAMYI 349
G V+N+T + G + I+ V LK D+ AD+ EA++GA+ +
Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDV-LKTGDKKIFADVFEAYIGALAM 361
Query: 350 DKG--MEACEQFCKVCFFPRLQYFILN--QEWNDPKSKLQQCCLTLRTLDGGEPDI-PIY 404
++G +E +++ + P + + +E D ++K + L G+ D+ P+Y
Sbjct: 362 ERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI------GQDDLHPVY 415
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKR 464
++ +G + V E L + T N++++A + AA L + + ++
Sbjct: 416 NTLQ-MGDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNN-NEVLKKYFVARQ 473
Query: 465 VIAKSIELQKHE 476
I + I+LQ+ E
Sbjct: 474 QIERPIKLQRLE 485
Score = 45 (20.9 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 220 VEQSPLLKQLQYLEYSSGVIFNHIRL 245
+E++P QLQYL S I N IRL
Sbjct: 137 LEKAPNCNQLQYL-IESDEIDNGIRL 161
>UNIPROTKB|Q5A694 [details] [associations]
symbol:RNT1 "Probable ribonuclease III" species:237561
"Candida albicans SC5314" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=TAS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 CGD:CAL0001312 GO:GO:0005737 GO:GO:0046872
GO:GO:0006397 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033
GO:GO:0030422 GO:GO:0016075 GO:GO:0019843 EMBL:AACQ01000057
GO:GO:0006364 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
GO:GO:0003968 RefSeq:XP_717201.1 ProteinModelPortal:Q5A694
STRING:Q5A694 GeneID:3641164 KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 156 (60.0 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 63/252 (25%), Positives = 117/252 (46%)
Query: 241 NHIRLLARVF----TTRSMGY--TNLTLGS-NQRLEFLGDTVLQLITSDYLYNHFPEHHE 293
N +L RVF T + Y N L S N+RLEF GD++L + + ++ FP+ E
Sbjct: 243 NDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302
Query: 294 GHXXXXXXXXVNNRTQSVVCNDIGMPF-FANIINPKVDLKMKDR---ADLLEAFLGAMYI 349
G V+N+T + G + I+ V LK D+ AD+ EA++GA+ +
Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDV-LKTGDKKIFADVFEAYIGALAM 361
Query: 350 DKG--MEACEQFCKVCFFPRLQYFILN--QEWNDPKSKLQQCCLTLRTLDGGEPDI-PIY 404
++G +E +++ + P + + +E D ++K + L G+ D+ P+Y
Sbjct: 362 ERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI------GQDDLHPVY 415
Query: 405 KVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQKCPSICPQLDHQKR 464
++ +G + V E L + T N++++A + AA L + + ++
Sbjct: 416 NTLQ-MGDGIHNKFIVQCTINGEELGRGTANNLKEAGLRAAMAGLNN-NEVLKKYFVARQ 473
Query: 465 VIAKSIELQKHE 476
I + I+LQ+ E
Sbjct: 474 QIERPIKLQRLE 485
Score = 45 (20.9 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 220 VEQSPLLKQLQYLEYSSGVIFNHIRL 245
+E++P QLQYL S I N IRL
Sbjct: 137 LEKAPNCNQLQYL-IESDEIDNGIRL 161
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 97 (39.2 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 28/94 (29%), Positives = 40/94 (42%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PD D+ + L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 1654 PDADKTL---NHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLG 1709
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
D +L + + +LY +H G VNN
Sbjct: 1710 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 1743
Score = 81 (33.6 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1802 DIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1858
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1859 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1909
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1910 LRSLKANQPQV 1920
Score = 77 (32.2 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1320 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1371
Score = 41 (19.5 bits), Expect = 7.7e-07, Sum P(4) = 7.7e-07
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1559 SIADCVEALLGCYLTSCG-ERAAQLF 1583
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 97 (39.2 bits), Expect = 9.6e-07, Sum P(4) = 9.6e-07
Identities = 28/94 (29%), Positives = 40/94 (42%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PD D+ + L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 1653 PDADKTL---NHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLG 1708
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
D +L + + +LY +H G VNN
Sbjct: 1709 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 1742
Score = 80 (33.2 bits), Expect = 9.6e-07, Sum P(4) = 9.6e-07
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1801 DIEVPKAMGDIFESLAGAIYMDSGM-SLETVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1857
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1858 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1908
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1909 LRSLKANQPQV 1919
Score = 77 (32.2 bits), Expect = 9.6e-07, Sum P(4) = 9.6e-07
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1319 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1370
Score = 41 (19.5 bits), Expect = 9.6e-07, Sum P(4) = 9.6e-07
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1558 SIADCVEALLGCYLTSCG-ERAAQLF 1582
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 93 (37.8 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+ + E F + L + FT S Y +T QRLEFLGD +L + + +L
Sbjct: 1656 LISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHL 1714
Query: 285 YNHFPEHHEGHXXXXXXXXVNN 306
Y +H G VNN
Sbjct: 1715 YEDPRQHSPGVLTDLRSALVNN 1736
Score = 83 (34.3 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 37/131 (28%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P +Q I N P+S +++
Sbjct: 1795 DIEVPKAMGDIFESLAGAIYMDSGM-SLEVVWQV-YYPMMQPLIEKFSANVPRSPVREL- 1851
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1852 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1902
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1903 LRSLKANQPQV 1913
Score = 77 (32.2 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1319 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1370
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1554 SIADCVEALLGCYLTSCG-ERAAQLF 1578
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 94 (38.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+ + E F + L + FT S Y +T QRLEFLGD +L + + +L
Sbjct: 1661 LISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHL 1719
Query: 285 YNHFPEHHEGHXXXXXXXXVNN 306
Y +H G VNN
Sbjct: 1720 YEDPRQHSPGVLTDLRSALVNN 1741
Score = 81 (33.6 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1800 DIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1856
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1857 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1907
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1908 LRSLKANQPQV 1918
Score = 77 (32.2 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1320 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1371
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1557 SIADCVEALLGCYLTSCG-ERAAQLF 1581
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 94 (38.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+ + E F + L + FT S Y +T QRLEFLGD +L + + +L
Sbjct: 1661 LISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHL 1719
Query: 285 YNHFPEHHEGHXXXXXXXXVNN 306
Y +H G VNN
Sbjct: 1720 YEDPRQHSPGVLTDLRSALVNN 1741
Score = 81 (33.6 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1800 DIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1856
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1857 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1907
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1908 LRSLKANQPQV 1918
Score = 77 (32.2 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1320 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1371
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1557 SIADCVEALLGCYLTSCG-ERAAQLF 1581
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 94 (38.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+ + E F + L + FT S Y +T QRLEFLGD +L + + +L
Sbjct: 1665 LISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHL 1723
Query: 285 YNHFPEHHEGHXXXXXXXXVNN 306
Y +H G VNN
Sbjct: 1724 YEDPRQHSPGVLTDLRSALVNN 1745
Score = 81 (33.6 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1804 DIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1860
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1861 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1911
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1912 LRSLKANQPQV 1922
Score = 77 (32.2 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1324 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1375
Score = 41 (19.5 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1561 SIADCVEALLGCYLTSCG-ERAAQLF 1585
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 100 (40.3 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+ + E IF + L + FT S Y +T QRLEFLGD +L + + +L
Sbjct: 1648 LISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHL 1706
Query: 285 YNHFPEHHEGHXXXXXXXXVNN 306
Y +H G VNN
Sbjct: 1707 YEDPRQHSPGVLTDLRSALVNN 1728
Score = 77 (32.2 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1309 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKQGLPSRMV 1360
Score = 73 (30.8 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 34/122 (27%), Positives = 59/122 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1787 DIEVPKAMGDIFESLAGAIYMDSGM-SLEVVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1843
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1844 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1894
Query: 449 LQ 450
L+
Sbjct: 1895 LR 1896
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1546 SIADCVEALLGCYLTSCG-ERAAQLF 1570
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 93 (37.8 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+ + E F + L + FT S Y +T QRLEFLGD +L + + +L
Sbjct: 1657 LISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHL 1715
Query: 285 YNHFPEHHEGHXXXXXXXXVNN 306
Y +H G VNN
Sbjct: 1716 YEDPRQHSPGVLTDLRSALVNN 1737
Score = 79 (32.9 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1796 DIEVPKAMGDIFESLAGAIYMDSGM-SLEVVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1852
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1853 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1903
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1904 LRSLKANQPQV 1914
Score = 77 (32.2 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + + +LF +PD EG L+ R+ V N +L L K+ GL M+
Sbjct: 1319 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1370
Score = 41 (19.5 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1554 SIADCVEALLGCYLTSCG-ERAAQLF 1578
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 94 (38.1 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 27/96 (28%), Positives = 40/96 (41%)
Query: 211 QEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEF 270
+ PD ++ L+ + E F + L + FT S Y +T QRLEF
Sbjct: 1622 EHPDAEKTL---DHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTIT-DCYQRLEF 1677
Query: 271 LGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
LGD +L + + +LY +H G VNN
Sbjct: 1678 LGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 1713
Score = 76 (31.8 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 35/122 (28%), Positives = 58/122 (47%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E V ++P +Q I N P+S +++
Sbjct: 1772 DIEVPKAMGDIFESLAGAIYMDSGM-SLETVWHV-YYPMMQPLIEKFSANVPRSPVREL- 1828
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1829 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1879
Query: 449 LQ 450
L+
Sbjct: 1880 LR 1881
Score = 71 (30.1 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIG 138
G++F + + +LF +PD EG L+ R+ V N +L L K+ G
Sbjct: 1296 GDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKG 1341
Score = 41 (19.5 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1532 SIADCVEALLGCYLTSCG-ERAAQLF 1556
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 94 (38.1 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 28/94 (29%), Positives = 39/94 (41%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
P+ DR L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 1654 PEADRTLRH---LISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLG 1709
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
D +L + + +LY +H G VNN
Sbjct: 1710 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 1743
Score = 85 (35.0 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 37/131 (28%), Positives = 64/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1802 DIEVPKAMGDIFESLAGAIYMDSGM-SLETVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1858
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+I + E R TV V K + K G S + A+ AA+ A
Sbjct: 1859 LEM------EPEITKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1909
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1910 LRSLKANQPQV 1920
Score = 61 (26.5 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 93 GNNFSQF-ITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F + IT++ L + D EG L+ R+ V N +L L K+ GL M+
Sbjct: 1319 GDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1371
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1559 SIADCVEALLGCYLTSCG-ERAAQLF 1583
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 100 (40.3 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 225 LLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYL 284
L+ + E IF + L + FT S Y +T QRLEFLGD +L + + +L
Sbjct: 141 LISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLGDAILDYLITKHL 199
Query: 285 YNHFPEHHEGHXXXXXXXXVNN 306
Y +H G VNN
Sbjct: 200 YEDPRQHSPGVLTDLRSALVNN 221
Score = 70 (29.7 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 280 DIEVPKAMGDIFESLAGAIYMDSGM-SLEVVWQV-YYPMMRPLIEKFSANVPRSPVREL- 336
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV + K + K G S + A+ AA+ A
Sbjct: 337 LEM------EPETAKFSPAERTYDGKVR-VTVELVGKGK--FKGVGRSYRIAKSAAARRA 387
Query: 449 LQ 450
L+
Sbjct: 388 LR 389
Score = 41 (19.5 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 39 SIADCVEALLGCYLTSCG-ERAAQLF 63
>UNIPROTKB|A7TR32 [details] [associations]
symbol:Kpol_455p11 "Putative uncharacterized protein"
species:436907 "Vanderwaltozyma polyspora DSM 70294" [GO:0042802
"identical protein binding" evidence=IPI] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 OrthoDB:EOG4JT3FD EMBL:DS480469
RefSeq:XP_001643138.1 PDB:3RV0 PDB:3RV1 PDBsum:3RV0 PDBsum:3RV1
ProteinModelPortal:A7TR32 GeneID:5543348 KEGG:vpo:Kpol_455p11
Uniprot:A7TR32
Length = 558
Score = 128 (50.1 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 58/199 (29%), Positives = 92/199 (46%)
Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMP--FF 321
SN+RLEFLGD+ L + S +Y FP +EG VNN +
Sbjct: 142 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ 201
Query: 322 ANIINPK--VDLKMKDR-ADLLEAFLGAMYIDK-GMEACE--QFCKVCFFPRL---QYFI 372
NI P V KM R AD +EA++GA+ ID+ G E + ++ + +L +
Sbjct: 202 GNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMV 261
Query: 373 LNQEWN-DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAK 431
+ + N + K++L + L + L G + Y+ + + P + V V + L +
Sbjct: 262 IKEPLNKNAKNELAEL-LQINKL-GHKLH---YRKLTEMPP-----FRVEVKIGDILLDE 311
Query: 432 ATGNSIQQAEMNAAKVALQ 450
A GNSI++AE AA L+
Sbjct: 312 AEGNSIREAEHRAAMKVLE 330
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 111 (44.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 48/172 (27%), Positives = 68/172 (39%)
Query: 153 HEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWM--YYPQHPLQE 210
H K +A+ EAL+GA +D G A V+F +W+ LQ
Sbjct: 1227 HHWLYKKTIADVVEALVGAFLVDSGFKGA-------------VKFLKWIGVNVDFESLQV 1273
Query: 211 QEPD-GDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLE 269
Q+ R+++ + L+ LE F H LL + F S Y G QRLE
Sbjct: 1274 QDACIASRRYLPLTTR-NNLETLENQLDYKFLHKGLLVQAFIHPS--YNRHGGGCYQRLE 1330
Query: 270 FLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVVCNDIGMPFF 321
FLGD VL + + Y + FP+ G VNN + V + F
Sbjct: 1331 FLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRF 1382
Score = 73 (30.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 143
G+ F +F S HLF ++EG L R+ +V N +L LA + L+ ++
Sbjct: 1125 GDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYI 1175
Score = 45 (20.9 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 338 DLLEAFLGAMYIDKG 352
DL+E+ LGA+++D G
Sbjct: 1422 DLVESCLGALFLDCG 1436
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 121 (47.7 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 32/99 (32%), Positives = 46/99 (46%)
Query: 231 YLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPE 290
YLE + G F R L + T S TN GS Q LEF+GD +L + S Y++ + +
Sbjct: 1435 YLEKNLGYTFKDRRYLLQALTHPSYP-TNRITGSYQELEFIGDAILDFLISAYIFENNTK 1493
Query: 291 HHEGHXXXXXXXXVNNRTQSVVCNDIGMPFFANIINPKV 329
+ G VNN T + +C + FF N K+
Sbjct: 1494 MNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKL 1532
Score = 52 (23.4 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 325 INPKVDLKMKDRADLLEAFLGAMYID-KGMEACEQFCKVCFFPRLQYF 371
++ VD+ K D+LEA + A+Y+D + ++ + F P LQ F
Sbjct: 1602 MSTNVDVP-KALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQEF 1648
Score = 51 (23.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHL 130
G++F + +++L + D EG L ++ +V N++L
Sbjct: 1216 GDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1253
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 109 (43.4 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 42/150 (28%), Positives = 66/150 (44%)
Query: 158 KHAMANCFEALMGALFLDGGIDVADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDR 217
+ +A+ E+L+GA ++GG A F+ + + +V F Y L D
Sbjct: 1154 RKVIADVVESLIGAFLVEGGFKAA---FAFLHWIGIDVDFNNPALY--RVL-------DS 1201
Query: 218 QWVEQSPL-LKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVL 276
+ S + + LE G F H LL + F S ++ + G QRLEFLGD VL
Sbjct: 1202 SSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPS--FSQHSGGCYQRLEFLGDAVL 1259
Query: 277 QLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
+ + + YLY+ +P+ G V N
Sbjct: 1260 EYVITSYLYSTYPDIKPGQITDLRSLAVGN 1289
Score = 73 (30.8 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFM 143
G+ F +++ H F + ++EG L R+ +V N HL L+ R L+ ++
Sbjct: 1049 GDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYI 1099
Score = 42 (19.8 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 398 EPDIPIYKVIEHVGPTN------SRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQ- 450
E DI + H+ N S+T + F N+ +A + + + N K+A Q
Sbjct: 1486 EADISVKMKSPHIHEENIPFQNTETSFTRSSKFHNQIIAGSGKHDVNNGRNNQPKLATQS 1545
Query: 451 -KCPSICPQLDHQK 463
+ PS + ++K
Sbjct: 1546 GRLPSEATEKSNKK 1559
Score = 41 (19.5 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 334 KDRADLLEAFLGAMYIDKGMEACEQFCKVCFF---PRLQYFILNQEWNDPKSKLQQCC 388
K D++E+ +GA+ +D G KV P L + N N P +L++ C
Sbjct: 1340 KALGDIVESCIGAVLLDSGFNL-NYVWKVMLMLLKPVLTF--ANMHTN-PMRELRELC 1393
Score = 39 (18.8 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 402 PIYKVIEHVGPTNSRSYTVAV 422
P +K+ + GP++ R +T V
Sbjct: 1586 PEFKLCKEEGPSHLRKFTYKV 1606
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 97 (39.2 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 29/84 (34%), Positives = 37/84 (44%)
Query: 225 LLKQLQY--LEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSD 282
L +Q Q+ LE G F L + FT S N G QRLEFLGD VL + +
Sbjct: 1637 LWQQFQFTQLEEKIGYRFKERAYLVQAFTHASY-INNRVTGCYQRLEFLGDAVLDYMITR 1695
Query: 283 YLYNHFPEHHEGHXXXXXXXXVNN 306
YL+ ++ G VNN
Sbjct: 1696 YLFEDSRQYSPGVLTDLRSALVNN 1719
Score = 82 (33.9 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
G++F +F T+ +L+H D EG L+ R+ V N +L L K++G+ ++
Sbjct: 1419 GDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQLIV 1470
Score = 47 (21.6 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKG 352
D+++ K D+ E+ GA+Y+D G
Sbjct: 1782 DIEVPKAMGDIFESVAGAIYLDSG 1805
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 134 (52.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 67/239 (28%), Positives = 98/239 (41%)
Query: 93 GNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYA------ 146
G+ F + SI +F FPD +E L R I+ N +L +A L + L
Sbjct: 936 GDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLEIRH 995
Query: 147 ---HG-----SDLCHEVELKHA----MANCFEALMGALFLDGGIDVADQVFSSVLYKDNE 194
+G SD C L+ +A+ EA +GA LD G+D A ++ S+ +
Sbjct: 996 WCPYGFQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLDSGLDSALKICKSLSVGLLD 1055
Query: 195 V-RFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTR 253
+ + +W Y L D R Q P Y+E + G F + +LL F
Sbjct: 1056 ISNWDEWNNY--FDLNTYA-DSLRN--VQFPYSS---YIEETIGYSFKNKKLLHLAFIHP 1107
Query: 254 SMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNNRTQSVV 312
SM + Q+LEFLGD VL I YLY +P G V N++ S +
Sbjct: 1108 SMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYI 1166
Score = 40 (19.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 337 ADLLEAFLGAMYIDKG 352
+D LEA + A+++D G
Sbjct: 1218 SDTLEAMICAIFLDSG 1233
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 98 (39.6 bits), Expect = 0.00088, Sum P(4) = 0.00088
Identities = 29/94 (30%), Positives = 39/94 (41%)
Query: 213 PDGDRQWVEQSPLLKQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
PD DR L+ + E F + L + FT S Y +T QRLEFLG
Sbjct: 1651 PDADRTLRH---LISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT-DCYQRLEFLG 1706
Query: 273 DTVLQLITSDYLYNHFPEHHEGHXXXXXXXXVNN 306
D +L + + +LY +H G VNN
Sbjct: 1707 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN 1740
Score = 80 (33.2 bits), Expect = 0.00088, Sum P(4) = 0.00088
Identities = 36/131 (27%), Positives = 63/131 (48%)
Query: 330 DLKM-KDRADLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQEWNDPKSKLQQCC 388
D+++ K D+ E+ GA+Y+D GM + E +V ++P ++ I N P+S +++
Sbjct: 1799 DIEVPKAMGDIFESLAGAIYMDSGM-SLETVWQV-YYPMMRPLIEKFSANVPRSPVREL- 1855
Query: 389 LTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVA 448
L + EP+ + E R TV V K + K G S + A+ AA+ A
Sbjct: 1856 LEM------EPETAKFSPAERTYDGKVR-VTVEVVGKGK--FKGVGRSYRIAKSAAARRA 1906
Query: 449 LQKCPSICPQL 459
L+ + PQ+
Sbjct: 1907 LRSLKANQPQV 1917
Score = 45 (20.9 bits), Expect = 0.00088, Sum P(4) = 0.00088
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 112 IEEGGLATYRAAIVQNQHLAHLAKRIGLEDFML 144
+ EG L+ R+ V N +L L K+ GL M+
Sbjct: 1336 LHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1368
Score = 41 (19.5 bits), Expect = 0.00088, Sum P(4) = 0.00088
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 160 AMANCFEALMGALFLDGGIDVADQVF 185
++A+C EAL+G G + A Q+F
Sbjct: 1556 SIADCVEALLGCYLTSCG-ERAAQLF 1580
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 550 542 0.00095 119 3 11 22 0.47 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 624 (66 KB)
Total size of DFA: 351 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 46.25u 0.08s 46.33t Elapsed: 00:00:35
Total cpu time: 46.27u 0.08s 46.35t Elapsed: 00:00:37
Start: Thu Aug 15 13:52:11 2013 End: Thu Aug 15 13:52:48 2013