RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3362
         (550 letters)



>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus
           [TaxId: 1396]}
          Length = 127

 Score = 77.3 bits (190), Expect = 9e-18
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 264 SNQRLEFLGDTVLQLITSDYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFF-- 321
           ++  L ++GD V +     +L           L  L +S V+ + Q+ V   +    F  
Sbjct: 7   NSLALAYMGDAVYEQYIRYHLLQKGKV-RPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 65

Query: 322 --------------ANIINPKVDLKMKDRADLLEAFLGAMYIDKGMEACEQFCKVCF 364
                         +  +    D++    +   EA +G  ++    E  ++      
Sbjct: 66  EEEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 122



 Score = 60.8 bits (147), Expect = 6e-12
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 13/104 (12%)

Query: 98  QFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSDLCHEVEL 157
           +     HL           L     + V  +  A +   +    F+     + L      
Sbjct: 20  EQYIRYHLLQKGKV-RPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNA 78

Query: 158 K------------HAMANCFEALMGALFLDGGIDVADQVFSSVL 189
                        +  +  FEAL+G   L    +  D++    +
Sbjct: 79  NSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 122


>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 77.6 bits (190), Expect = 2e-17
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 227 KQLQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLG-----SNQRLEFLGDTVLQLITS 281
           K ++  +  +G+ F +  LL R     S        G     SN++LEFLGD VL+L   
Sbjct: 9   KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVC 68

Query: 282 DYLYNHFPEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKD----RA 337
           + LY  +PE   G L+ ++S+  +    ++V   + +  F  +   +     +D     A
Sbjct: 69  EILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILA 128

Query: 338 DLLEAFLGAMYIDKGMEACEQFCKVCFFPRLQYFILNQ 375
           D  EA L A+Y+D+G E  ++  +  F   ++  +  +
Sbjct: 129 DAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGE 166



 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 23/99 (23%), Positives = 47/99 (47%)

Query: 91  HKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAHGSD 150
             G+   +      L+  +P+ E G LA  ++A    + LA +++++ L  F+    G +
Sbjct: 57  FLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEE 116

Query: 151 LCHEVELKHAMANCFEALMGALFLDGGIDVADQVFSSVL 189
                +    +A+ FEAL+ A++LD G +   ++F    
Sbjct: 117 KTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEF 155


>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 148

 Score = 69.1 bits (168), Expect = 1e-14
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 229 LQYLEYSSGVIFNHIRLLARVFTTRSMGYTNLTLGSNQRLEFLGDTVLQLITSDYLYNHF 288
           L+ LE   G  F    LL +  T  S           + LEFLGD ++     D L  + 
Sbjct: 2   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE----HYETLEFLGDALVNFFIVDLLVQYS 57

Query: 289 PEHHEGHLSLLRSSLVNNRTQSVVCNDIGMPFFANIINPKVDLKMKDRADLLEAFLGAMY 348
           P   EG LS L++ L++    +++   + +  F  I   K++  +    D+ EA   A+Y
Sbjct: 58  PNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI--IGDVFEALWAAVY 115

Query: 349 IDKGMEACEQFCKVCFFPRLQYFILNQ 375
           ID G +A   F +  F+   +  IL+ 
Sbjct: 116 IDSGRDA--NFTRELFYKLFKEDILSA 140



 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 88  MYIHKGNNFSQFITSIHLFHVFPDIEEGGLATYRAAIVQNQHLAHLAKRIGLEDFMLYAH 147
                G+    F     L    P+  EG L+  +A ++  +    LA+++ L  F+    
Sbjct: 36  TLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR 95

Query: 148 GSDLCHEVELKHAMANCFEALMGALFLDGGIDVA 181
           G         +  + + FEAL  A+++D G D  
Sbjct: 96  GKIN------ETIIGDVFEALWAAVYIDSGRDAN 123


>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 69

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
           D K+ LQ+   +           P Y ++        R + V V    + +A   G + +
Sbjct: 1   DYKTALQEIVQSEH------KVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKK 54

Query: 439 QAEMNAAKVALQK 451
           +AE  AA++A +K
Sbjct: 55  EAEKEAARIAYEK 67


>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 68

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
           D K+ LQ+             + P Y++I   GP + + + V    K  R     G S +
Sbjct: 1   DYKTILQEITQKRWK------ERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKK 53

Query: 439 QAEMNAAKVALQK 451
           +AE  AA+  ++ 
Sbjct: 54  EAEQRAAEELIKL 66


>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 85

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 11/92 (11%)

Query: 371 FILNQEWNDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLA 430
           F++N         L +    +          P+Y   E   P+    +  +V        
Sbjct: 2   FVINPNGKSEVCILHEYMQRVLK------VRPVYNFFECENPS--EPFGASVTIDGVTYG 53

Query: 431 KATGNSIQQAEMNAAKVALQKCPSICPQLDHQ 462
             T +S + A+  AA+  L+    + P    Q
Sbjct: 54  SGTASSKKLAKNKAARATLEI---LIPDFVKQ 82


>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 71

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
           +P   L +    L+           Y  +   G ++++S+ ++V    +   + +G + +
Sbjct: 5   NPVMILNELRPGLK-----------YDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKK 52

Query: 439 QAEMNAAKVALQK 451
            A+  AA+ AL  
Sbjct: 53  LAKARAAQSALAT 65


>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
                +L         +         Y+ + + GP + R +T  V        +  G S 
Sbjct: 13  GFFMEELNTYRQKQGVV-------LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK 65

Query: 438 QQAEMNAAKVALQK 451
           ++A+  AAK+A++ 
Sbjct: 66  KEAKNAAAKLAVEI 79


>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 84

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
           +   +L Q    +R           YK++   GP ++  +T++V   +    +A+G S +
Sbjct: 13  NALMRLNQ----IRPG-------LQYKLLSQSGPVHAPVFTMSVDV-DGTTYEASGPSKK 60

Query: 439 QAEMNAAKVALQK 451
            A+++ A   LQ 
Sbjct: 61  TAKLHVAVKVLQA 73


>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
                KL +                 YK +   GP + R +T  V    +   +A G S 
Sbjct: 7   GFYMDKLNKYRQMHGVA-------ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSK 59

Query: 438 QQAEMNAAKVALQK 451
           Q+A   AAK+A+  
Sbjct: 60  QEARNAAAKLAVDI 73


>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 73

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
            PK+ L Q    L  +  G      Y ++   GP ++  + ++V   N ++ + +G + +
Sbjct: 5   LPKNALMQ----LNEIKPG----LQYMLLSQTGPVHAPLFVMSVEV-NGQVFEGSGPTKK 55

Query: 439 QAEMNAAKVALQKC 452
           +A+++AA+ AL+  
Sbjct: 56  KAKLHAAEKALRSF 69


>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second
           dsRBD {Xenopus laevis [TaxId: 8355]}
          Length = 69

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 380 PKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQ 439
           P   LQ+  +           +P Y V +  GP + R +T+    +       +G S Q 
Sbjct: 2   PVGSLQELAVQKG------WRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQV 54

Query: 440 AEMNAAKVALQK 451
           A+  AA+  L K
Sbjct: 55  AKRVAAEKLLTK 66


>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
           RNA-dependent protein kinase activator A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 73

 Score = 44.3 bits (104), Expect = 8e-07
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
            P   L +  +  + +       P+Y+        +  ++T  V   +       G S +
Sbjct: 3   TPIQVLHEYGMKTKNI-------PVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKK 54

Query: 439 QAEMNAAKVALQK 451
            A+  AA+ A+  
Sbjct: 55  LAKHRAAEAAINI 67


>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 9/51 (17%), Positives = 17/51 (33%)

Query: 401 IPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQQAEMNAAKVALQK 451
           + +            + +              +G + Q+A+  AAK A QK
Sbjct: 14  LSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQK 64


>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 76

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
            P S++ +  +              +KV+   GP + +++  A    +  + +  GN  +
Sbjct: 8   SPISQVHEIGIKRNMT-------VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKK 59

Query: 439 QAEMNAAKVALQK 451
            ++  AA+  L +
Sbjct: 60  VSKKRAAEKMLVE 72


>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l
           (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 128

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 10/74 (13%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATG-NSI 437
            PK  L + C   +         P+Y+ ++         +   V    ++        S 
Sbjct: 27  TPKMCLLEWCRREKL------PQPVYETVQRTIDRM---FCSVVTVAEQKYQSTLWDKSK 77

Query: 438 QQAEMNAAKVALQK 451
           + AE  AA V L+ 
Sbjct: 78  KLAEQTAAIVCLRS 91


>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
           +    + +     R        + +       G      +        +  +  TG++ Q
Sbjct: 15  NYIGLINRIAQKKR--------LTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQ 66

Query: 439 QAEMNAAKVALQK 451
           +A+  AAK+A  +
Sbjct: 67  EAKQLAAKLAYLQ 79


>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 81

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
           + K +L           G       Y  ++     +  S           L    G +I+
Sbjct: 7   NAKRQLYSLI-------GYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIK 59

Query: 439 QAEMNAAKVALQKCPSI 455
            A + AA+ AL+    +
Sbjct: 60  IAGIRAAENALRDKKML 76


>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 76

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
           +P   LQ+  +           +P Y V +  GP + + +T+    +       +G S +
Sbjct: 10  NPVGALQELVVQKG------WRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKK 62

Query: 439 QAEMNAAKVALQK 451
            A+ NAA   L +
Sbjct: 63  LAKRNAAAKMLLR 75


>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 99

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 7/74 (9%)

Query: 378 NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSI 437
           +  K+ L   C   +         P Y++         +                   + 
Sbjct: 6   SGIKNFLYAWCGKRKMT-------PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNK 58

Query: 438 QQAEMNAAKVALQK 451
           + A+ NAA+  +  
Sbjct: 59  KDAQSNAARDFVNY 72


>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 113

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 372 ILNQEW--NDPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERL 429
            L+  W   + K++L Q     +           YK  +  GP ++RS+   +    ++L
Sbjct: 18  GLHGNWTLENAKARLNQYFQKEK-------IQGEYKYTQV-GPDHNRSFIAEMTIYIKQL 69

Query: 430 -----AKATGNSIQQAEMNAAKVALQK 451
                A+  G++ + A  + A   +++
Sbjct: 70  GRRIFAREHGSNKKLAAQSCALSLVRQ 96


>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 89

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 379 DPKSKLQQCCLTLRTLDGGEPDIPIYKVIEHVGPTNSRSYTVAVYFKNERLAKATGNSIQ 438
            P S+L Q     +         P Y ++   G    R + + V   NE  A  TG + +
Sbjct: 7   GPISRLAQIQQARKE------KEPDYILLSERGMPRRREFVMQVKVGNEV-ATGTGPNKK 59

Query: 439 QAEMNAAKVALQK 451
            A+ NAA+  L +
Sbjct: 60  IAKKNAAEAMLLQ 72


>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
           maltophilia [TaxId: 40324]}
          Length = 266

 Score = 27.6 bits (60), Expect = 3.2
 Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 287 HFPEHHEGHLSLLRSSLVNNRTQSVVC-NDIGMPFFANIINPKVDLKMKDRADLLEAFL 344
               H  G  +   +   N +   +   + +  P +    NP+    ++D         
Sbjct: 155 FMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVR 213


>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 152

 Score = 26.4 bits (58), Expect = 5.7
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 181 ADQVFSSVLYKDNEVRFKQWMYYPQHPLQEQEPDGDRQWVEQSPLLKQLQYLEYS----- 235
           A Q F S+   D   RF+ W  Y Q      E   D  W      + +L+   +      
Sbjct: 38  AKQGFDSIDKTDLRGRFRWWGLYTQR-----EQGYDGTWTGDD-NIDKLEAKYFMMRVRC 91

Query: 236 -SGVIF-NHIRLLARVFTTRSMGYTNLTLGSNQRLEFLG 272
             G +    +R L ++ T  +    +++    Q +++  
Sbjct: 92  DGGALSAAALRTLGQISTEFARDTADIS--DRQNVQYHW 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,068,081
Number of extensions: 96903
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 31
Length of query: 550
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 460
Effective length of database: 1,171,896
Effective search space: 539072160
Effective search space used: 539072160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.7 bits)