RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3368
(169 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 142 bits (359), Expect = 2e-40
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
++ G++RG+ + ++N L + +LG+PYAAPP G+ RF P+ P PW + A
Sbjct: 12 LVTTNFGKIRGIKKE-LNNEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQ 70
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKK 148
F+PVCPQ + + + + + Y+++QSEDCLYLNIY P +++ +
Sbjct: 71 FAPVCPQNIIDGRLPEVM--LPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSG 128
Query: 149 EER 151
+
Sbjct: 129 GPK 131
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 128 bits (323), Expect = 2e-35
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
++ ++ G+LRG+ R G + +LGIP+A PPVG RFM P+ +PW G++ A +
Sbjct: 9 LVRVRGGQLRGI-RLKAPGGP---VSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATT 64
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
F VC Q + L +M + SEDCLYLN++TP
Sbjct: 65 FQNVCYQYVDTLYPGFEGTEM-----------WNPNRELSEDCLYLNVWTP 104
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 127 bits (321), Expect = 3e-35
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 23/111 (20%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
++E + GRLRG + V ++ GIPYA PVG+ RF+ P+ P W G+ A S
Sbjct: 5 VVETRYGRLRGEMNEGVF--------VWKGIPYAKAPVGERRFLPPEPPDAWDGVREATS 56
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
F PV Q + + + SED LYLNI++P
Sbjct: 57 FGPVVMQPSDPIFSGLLGRMS---------------EAPSEDGLYLNIWSP 92
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 126 bits (319), Expect = 6e-35
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
II K G++RG+ + G + +LGIPYA PP+G+LRF PQS W + A
Sbjct: 5 IIATKNGKVRGMQLT--VFGG--TVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATK 60
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
++ C Q + +M + SEDCLYLN++ P
Sbjct: 61 YANSCCQNIDQSFPGFHGSEM-----------WNPNTDLSEDCLYLNVWIP 100
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 126 bits (318), Expect = 8e-35
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
++ K G++ G + +I +LGIP+A PPVG +RF P+ +PW G+ A +
Sbjct: 7 LVNTKSGKVMGTRVP--VLSS--HISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNAST 62
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ C Q + +M + SEDCLYLNI+ P
Sbjct: 63 YPNNCQQYVDEQFPGFSGSEM-----------WNPNREMSEDCLYLNIWVP 102
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 126 bits (318), Expect = 8e-35
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+++ G++ G S G + ++LGIP+A PP+G LRF PQ +PW + A S
Sbjct: 7 VVDTVHGKVLGKFVSL--EGFAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNATS 64
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKK 148
+ P+C Q + SEDCLYLNIYTP ++ +
Sbjct: 65 YPPMCTQDPKAGQLLS---------ELFTNRKENIPLKLSEDCLYLNIYTPADLTKKNRL 115
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 125 bits (316), Expect = 1e-34
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
I+ + G+++G + VH + GIPYA PPVGQ RF AP+ P+ W ++ A +
Sbjct: 5 IVTTQYGKVKGTTENGVH--------KWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATA 56
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ P+CPQ L QSEDCLY+N++ P
Sbjct: 57 YGPICPQ-----------------PSDLLSLSYTELPRQSEDCLYVNVFAP 90
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 122 bits (307), Expect = 2e-33
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+L G + + +LGIP+A PPVG LRF P S
Sbjct: 3 TAKLANGDTITGLNA-------IINEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTS 55
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ P C Q+ P ++ K + + + L QSEDCL +N+ P
Sbjct: 56 YGPSCMQQNPEGTFEENLGKTALDLVMQSKVFQAVL-PQSEDCLTINVVRP 105
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 120 bits (302), Expect = 2e-32
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 21/127 (16%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
++ + G +RG+ R + + G+PYA P+G+LRF Q +PW + A
Sbjct: 9 VVRTESGWIRGLKR-RAEGNK--SYASFRGVPYAKQPLGELRFKELQPLEPWQDELDATQ 65
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKK 148
PVC Q D ++ + R SE C++ NI+ P +
Sbjct: 66 EGPVCQQT------DVLYGRIMRPR------------GMSEACIHANIHVPYYALPRDAA 107
Query: 149 EEREEKK 155
++
Sbjct: 108 DKNRFAG 114
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 119 bits (299), Expect = 4e-32
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 15/141 (10%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+++ G +RG + +H+Y GIPYA PPV LRF P +PW G++ A
Sbjct: 6 VVQTSSGPVRGRSVTVQGRE----VHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATG 61
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKK 148
S C Q+ +++ N SEDCLY+N++ P + +
Sbjct: 62 LSATCVQERYEYFPGFSGEEI-----------WNPNTNVSEDCLYINVWAPAKARLRHGR 110
Query: 149 EEREEKKKEEKKKEEGEEKKK 169
+ K+ +
Sbjct: 111 GANGGEHPNGKQADTDHLIHN 131
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 117 bits (294), Expect = 2e-31
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 29/111 (26%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+I L R +GV + +LG+ YA+PP+G LRF APQ P L A
Sbjct: 12 VINLGYARYQGVRLE-------AGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATE 64
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ P+C + SEDCL++N++ P
Sbjct: 65 YGPICIGLDEEESPG----------------------DISEDCLFINVFKP 93
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 116 bits (293), Expect = 3e-31
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 35 GRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADSFSPVCP 94
+ GV+ V + GIP+A PP+ LRF PQ + A+ FSP C
Sbjct: 11 EVISGVLEGKVD--------TFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFSPACM 62
Query: 95 QKLPNLDDDDFSKKMSKGRLQYYQALMPYLK------NQSEDCLYLNIYTP 139
Q P K + ++ + P + +EDCLYLN++ P
Sbjct: 63 QLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRP 113
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 109 bits (275), Expect = 9e-29
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 27/120 (22%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+ + G + GV + G+ ++ ++ GIP+AA P P+ W G + A S
Sbjct: 5 SVYTEGGFVEGVNKKLSLFGD--SVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKS 59
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKK 148
F C Q L +EDCLYLNI+ P +E
Sbjct: 60 FKKRCLQA----------------------TLTQDSTYGNEDCLYLNIWVPQGRKEVSHD 97
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 47.1 bits (111), Expect = 4e-07
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
L +E E ++ REE++K ++ + + +
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVME 109
Score = 36.7 bits (84), Expect = 0.001
Identities = 2/29 (6%), Positives = 16/29 (55%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
Q + ++ + + ++E +++ ++ ++
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 36.7 bits (84), Expect = 0.002
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+EE+ ++ +E + + ++E EK K
Sbjct: 91 REEQRKRLQELDAA--SKVMEQEWREKAK 117
Score = 32.1 bits (72), Expect = 0.058
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 140 LQEEEEEKKEEREEKKKEEKKK--------EEGEEKKK 169
LQE + K +E +++ KK E EK K
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Score = 30.1 bits (67), Expect = 0.21
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 14/44 (31%)
Query: 140 LQEEEEEKKEE--------------REEKKKEEKKKEEGEEKKK 169
L + ++E R+ ++ E+ K K
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 28.6 bits (63), Expect = 0.76
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 141 QEEEE--EKKEEREEKKKEEKKKEEGEEKKK 169
++ EE +++ E+ EK K + + ++
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 25.9 bits (56), Expect = 7.3
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 102 DDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKK 161
D + R + + L + + Q E+ E+ K K ++
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQ-------------SEQVEKNKINNRIADKAFYQQ 148
Query: 162 EEGE 165
+ +
Sbjct: 149 PDAD 152
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 34.9 bits (80), Expect = 0.006
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 103 DDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKE 162
+DF + + + + C + ++ Q ++E+KK+ ++KK+ + +
Sbjct: 68 NDFLQVLKESGGPLNGIEIKEF----SRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLER 123
Query: 163 EGEEKK 168
E E+
Sbjct: 124 EKFEED 129
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 35.1 bits (80), Expect = 0.009
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 103 DDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKE 162
D+ K+M+ L C + + + + E +K+ +E+K + K++
Sbjct: 106 KDWRKEMTNEEKNIITNL--------SKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN 157
Query: 163 EGEEKK 168
E K+
Sbjct: 158 EKLLKE 163
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 34.6 bits (79), Expect = 0.009
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 129 EDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKEEGEEKK 168
E C + IY + E+K +E+KK K+K++ E +
Sbjct: 100 ELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 28.5 bits (63), Expect = 1.3
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 137 YTPLQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ P+ + ++E++ + KEEKK E++
Sbjct: 104 FEPIYQWHLVQREKKLSRTKEEKKAI-KEKQDA 135
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 33.7 bits (76), Expect = 0.014
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 86 ADSFSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEE 145
A S + + +D ++ Q ++ L +E E
Sbjct: 48 AGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQ-------ADRLTQEPE 100
Query: 146 EKKEEREEKKKEEKKKEEGEEKKK 169
++ REE++K ++ + + +
Sbjct: 101 SIRKWREEQRKRLQELDAASKVME 124
Score = 28.7 bits (63), Expect = 0.69
Identities = 2/29 (6%), Positives = 16/29 (55%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
Q + ++ + + ++E +++ ++ ++
Sbjct: 109 QRKRLQELDAASKVMEQEWREKAKKDLEE 137
Score = 26.4 bits (57), Expect = 4.5
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 71 FMAPQSPQPWPGLMIADSFSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSED 130
F AP Q S + N D + G Y A+ + E
Sbjct: 44 FGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQ----EANGPADGYAAIAQADRLTQEP 99
Query: 131 CLYLNIYTPLQEEEEEKKEEREEKKKEEKKKEEGEEKK 168
+++ EE+++ +E K E+ +K
Sbjct: 100 -------ESIRKWREEQRKRLQELDAASKVMEQEWREK 130
Score = 25.7 bits (55), Expect = 8.3
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKK 168
+EE+ ++ +E + K +++ + KK
Sbjct: 106 REEQRKRLQELDAASKVMEQEWREKAKK 133
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.2 bits (76), Expect = 0.039
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ E+ +E K E+ E EK +
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Score = 28.2 bits (63), Expect = 1.8
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
L+ + E + EE K + +E+
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Score = 27.4 bits (61), Expect = 2.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEK 167
L+ E + ++ E K + + K
Sbjct: 909 LKIEARSVERYKKLHIGLENKIMQLQRK 936
Score = 26.6 bits (59), Expect = 5.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ E ++ K E ++ +K E K
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIM 931
Score = 26.2 bits (58), Expect = 6.8
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
LQ +RE KK + + + KK
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKL 922
Score = 25.8 bits (57), Expect = 9.6
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ +EE + R+E + + +K+ EE
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.1 bits (72), Expect = 0.065
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 139 PLQEEEEEKKEEREEKKKEEKKKEEGEEKK 168
L E+E E + +E + + + + +
Sbjct: 321 ILLEKEAELRRMQEMIARMQAQMQMQMQGG 350
Score = 30.6 bits (68), Expect = 0.22
Identities = 4/55 (7%), Positives = 19/55 (34%)
Query: 115 QYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ + + E+ L++E E ++ + + + + + + +
Sbjct: 298 NFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDG 352
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 31.8 bits (73), Expect = 0.079
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
EEEE KEE+E+ E +EE EEKK
Sbjct: 226 EEEEAAKEEKEDSDDEAAVEEEEEEKKP 253
Score = 29.9 bits (68), Expect = 0.36
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
E +E+KE+ +++ E+++EE + K K
Sbjct: 229 EAAKEEKEDSDDEAAVEEEEEEKKPKTK 256
Score = 29.5 bits (67), Expect = 0.45
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+EEK++ +E EE+++E+ + KK
Sbjct: 230 AAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 28.7 bits (65), Expect = 0.75
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+EE+E+ +E +++EE+KK + ++ +K
Sbjct: 232 KEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 27.9 bits (63), Expect = 1.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
EEE K+E+ + + ++EE E+K K
Sbjct: 227 EEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
E+E+ E E+++EEKK + + +K
Sbjct: 234 EKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active
enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP:
b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Length = 508
Score = 31.5 bits (71), Expect = 0.10
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 19 VTMSSKEYTNIIEL----KQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAP 74
T+++ + + I++ VV + IHM A P +G+LRF+A
Sbjct: 58 ATVTATQSGDYIKVTCVTDTLTQYMVVHN-----GDPIIHMA-TYITAEPSIGELRFIAR 111
Query: 75 QSPQPWPGLMIADSFSPVCPQKLPNLDDDDFSKKMSKGRLQYYQA 119
+ P S ++ D S+ R ++Y +
Sbjct: 112 LNSDLLPNEEPFGDVSTT--ADGTAIEGSDVFLVGSETRSKFYSS 154
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 30.7 bits (70), Expect = 0.19
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
L E +E + K+ + K
Sbjct: 228 LLHENVYTEEVLADIAKDMVNDPNYDSVKV 257
Score = 25.6 bits (57), Expect = 9.1
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ + K+ + + K EE ++ K
Sbjct: 237 EVLADIAKDMVNDPNYDSVKVEETDDPNK 265
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 30.5 bits (69), Expect = 0.19
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
EE + + EE K E E+
Sbjct: 200 SEEAAEAVLEGDASLEEVKAEASEDNAG 227
Score = 29.7 bits (67), Expect = 0.35
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
E + EE + + E+ + E+
Sbjct: 207 VLEGDASLEEVKAEASEDNAGTDSEDNSD 235
Score = 28.2 bits (63), Expect = 1.4
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEK 167
EE K E E ++ + +
Sbjct: 212 ASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 27.8 bits (62), Expect = 1.8
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ E ++ + EG+ +
Sbjct: 188 AQVAGLVAAGELSEEAAEAVLEGDASLE 215
Score = 26.2 bits (58), Expect = 4.9
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
E E + + + EE E
Sbjct: 181 LEAEVQAAQVAGLVAAGELSEEAAEAVL 208
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.5 bits (69), Expect = 0.25
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 143 EEEEKKEEREEKKKEEKKKEEGEEKKK 169
+E +K+ E EEK + K +E EK++
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKER 336
Score = 28.9 bits (65), Expect = 0.74
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEK 167
+ E E+K R + KE+ +KE E++
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.6 bits (64), Expect = 1.1
Identities = 6/29 (20%), Positives = 19/29 (65%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+E ++++E E+ ++ + KE+ E+++
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERL 337
Score = 27.0 bits (60), Expect = 3.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ ++ + EE+ + K K+K E E +K
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEK 339
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 28.4 bits (63), Expect = 0.71
Identities = 3/52 (5%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 115 QYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKEEGEE 166
QY + + + + + + + E+ ++++ ++ + +
Sbjct: 56 QYKRVYSFT-GQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQ 106
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.1 bits (65), Expect = 0.72
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 143 EEEEKKEEREEKKKEEKKKEEGEEKKK 169
+E +K+ E EEK + K +E EK++
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKER 407
Score = 28.7 bits (64), Expect = 1.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ E E+K R + KE+ +KE E+++K
Sbjct: 385 KRRETEEKMRRAKLAKEKAEKERLEKQQK 413
Score = 27.1 bits (60), Expect = 2.8
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ E EEK + K++ +K+ +++K+
Sbjct: 386 RRETEEKMRRAKLAKEKAEKERLEKQQKR 414
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.0 bits (65), Expect = 0.73
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEK 167
++EEEE ++ + EKKK +++ + EE+
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Score = 26.7 bits (59), Expect = 5.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEK 167
L EEEE+ K + K K E E E +
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVR 1047
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.1 bits (65), Expect = 0.78
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
++EEEE++ E + KE++++E K K
Sbjct: 401 KKEEEERRARMEAQLKEQRERERKMRKAK 429
Score = 26.8 bits (59), Expect = 4.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
E +KKEE E + + E + +E E+++
Sbjct: 396 ENMRKKKEEEERRARMEAQLKEQRERER 423
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan,
TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter
pylori}
Length = 326
Score = 28.3 bits (63), Expect = 1.3
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 54 HMYLGIPYAAP--PVGQLRFMAPQSPQPWPG 82
H + G P P + + Q P+
Sbjct: 4 HHHHGKPIPNPLLGLDSTENLYFQGIDPFTM 34
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A
{Bacillus subtilis} SCOP: a.186.1.2
Length = 84
Score = 26.8 bits (59), Expect = 1.6
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 104 DFSKKMSKGRLQYYQALMPYLKNQSEDCLY 133
DF + + + +Y+Q L Y+ +E LY
Sbjct: 2 DFREVIEQ---RYHQLLSRYIAELTETSLY 28
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.0 bits (62), Expect = 1.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEK 167
++ EE +++ EE EE +EE +E+
Sbjct: 205 RDPEEVEQQVAEEATTEEAGEEEAKEE 231
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 27.8 bits (61), Expect = 1.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEK 167
++ EE K++E EE E
Sbjct: 209 RDPEEAKEQEEEEAALVAPDYGAVAEY 235
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 27.7 bits (61), Expect = 2.0
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+ +ER ++ K+ K ++
Sbjct: 225 SKCGPVGSDERVKEFKQSLIKYMETQRSY 253
Score = 26.9 bits (59), Expect = 3.4
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 141 QEEEEEKKEEREE-KKKEEKKKEEGEEKK 168
+E KE ++ K E ++ +
Sbjct: 230 VGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 25.4 bits (55), Expect = 9.5
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 144 EEEKKEEREEKKKEEKKKEEGEEKKK 169
++ + +E+ KE + K
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIK 245
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 27.5 bits (61), Expect = 2.3
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 142 EEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+++E EE++ E +E+ E K+
Sbjct: 202 TLPTAEQKEAEEEEGAEGAEEKVAEVKE 229
Score = 27.1 bits (60), Expect = 2.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKK 168
E+KE EE+ E +++ E K+
Sbjct: 202 TLPTAEQKEAEEEEGAEGAEEKVAEVKE 229
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 3iyv_J
Length = 70
Score = 25.8 bits (56), Expect = 2.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
LQ E E ++ REE+ + + + K++
Sbjct: 4 LQSEPESIRKWREEQTERLEALDANSRKQE 33
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 26.9 bits (60), Expect = 2.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEE 166
+++ EE E E + +K KEE EE
Sbjct: 180 VEKLAEEAAAEVAEPEVIKKGKEEEEE 206
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 27.1 bits (59), Expect = 3.0
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 124 LKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
L N + LN + +E+ +K E + K++ K + K
Sbjct: 324 LTN-NNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKT 368
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.1
Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 3/19 (15%)
Query: 67 GQLRFMAPQSPQPWPGLMI 85
L+ A S P L I
Sbjct: 27 ASLKLYADDSA---PALAI 42
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 26.5 bits (59), Expect = 3.4
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 139 PLQE-EEEEKKEEREEKKKEEKKKEEG 164
P ++ +E + E+REE++KE+KK E
Sbjct: 175 PFEDARKEMEDEKREEEEKEKKKLENA 201
>2l16_A SEC-independent protein translocase protein tatad; membrane
protein, protein transport; NMR {Bacillus subtilis}
Length = 78
Score = 25.7 bits (56), Expect = 3.4
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKK 168
+E+EEK E K+++ E
Sbjct: 50 GDEKEEKSAELTAVKQDKNAGLEHHHHH 77
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 26.2 bits (58), Expect = 3.8
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 132 LYLNIYTPLQEEEEEKKEEREEKKKEEKKK 161
L + Y + ++ +++EE+ K K+K
Sbjct: 77 LVVLYYNANRAFQKMDTKKKEEQLKLLKEK 106
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching,
protein phosphatase, RSBT, stress; 1.85A {Bacillus
subtilis} PDB: 2j70_A 2j6z_A
Length = 111
Score = 26.0 bits (57), Expect = 4.4
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 104 DFSKKMSKGRLQYYQALMPYLKNQSEDCLY 133
DF + + + +Y+Q L Y+ ++ LY
Sbjct: 2 DFREVIEQ---RYHQLLSRYIAELTKTSLY 28
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 26.4 bits (59), Expect = 5.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEE 166
L++ E+ +E+ E+ KK K+K+ E
Sbjct: 425 LRDTEQRLREQVEDTKKSWKEKQGQEN 451
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA
thioesterase 7, serine esterase, protein structure,
domain duplication, ACOT7, macrophage; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 25.8 bits (57), Expect = 5.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 138 TPLQEEEEEKKEEREEKKKEEKKKEE 163
L++E+EE+ +R E +K E+ + +
Sbjct: 126 VYLRQEQEEEGRKRYEAQKLERMETK 151
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 26.0 bits (57), Expect = 5.8
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 122 PYLKNQSEDCLYLNIYTPLQEEEE--EKKEEREEKKKEEKKKEEGEEKKK 169
PY+ + +I L E+E+ K EE +KK+ +K+ ++K
Sbjct: 138 PYMSSPC------HIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLM 181
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 26.4 bits (57), Expect = 5.8
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 60 PYAAPPVGQLRFMAPQSPQPWPGLMIADSFSPVCPQKLPNLDDDDFS 106
P + G R P ++ V +P+ DF+
Sbjct: 13 PDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFA 59
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 26.3 bits (57), Expect = 6.3
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 97 LPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKK 156
LP L+ K ++ Y + PY++ + E EE+ E + +K
Sbjct: 22 LPPLEKLPHEKHHNQP----YCGIAPYIREFEDP--RDAPPPTRAETREERMERKRREKI 75
Query: 157 EEKKKEEGEEKKK 169
E +++E E K
Sbjct: 76 ERRQQEVETELKM 88
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein
structure initiative; 2.20A {Bacteroides vulgatus atcc
8482}
Length = 176
Score = 26.0 bits (56), Expect = 6.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEE 163
+ E K+ER+EKK E +++
Sbjct: 11 DAKREAWKKERQEKKALEAQQDS 33
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema
denticola} PDB: 3qz0_A
Length = 93
Score = 24.8 bits (53), Expect = 8.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 99 NLDDDDFSKKMSKGRLQYYQALMPYLKNQSED 130
++DDDD + KM+ + +Y+ + L+N+ +
Sbjct: 8 HVDDDDKTFKMNTAQKAHYEKFINALENELKT 39
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 25.8 bits (57), Expect = 8.3
Identities = 2/29 (6%), Positives = 8/29 (27%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
E + + + E + + +
Sbjct: 927 NLEAFDGECQSLEGQSNSDLLSILAQLTE 955
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal
transduction, nuclear transport, GTP hydrolysis, ground
state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3
PDB: 1k5g_B*
Length = 201
Score = 25.5 bits (55), Expect = 8.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKK 168
+ E+ E+ E +E+ KE+ EEK+
Sbjct: 174 NDHAEKVAEKLEALSVKEETKEDAEEKQ 201
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 25.8 bits (56), Expect = 8.9
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 142 EEEEEKKEEREEKKKEEKKKEE 163
E++ + K++ E++ K E
Sbjct: 310 EKQMKDKQDEEQRLKLEHHHHH 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 9.9
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 23/109 (21%)
Query: 67 GQLRFMAPQSPQPWP-GLMIADSFSPVCPQKLPNLDDDD-----------F----SKKMS 110
G L + + + + F+ + P+ DD F S +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 111 KGRLQYYQALMPYLKNQSEDCLYL---NIYT---PLQEEEEEKKEEREE 153
++ + ++ + E+C YL +I+ L +E + + +E
Sbjct: 74 PSKVGQFDQVLNLCLTEFENC-YLEGNDIHALAAKLLQENDTTLVKTKE 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.388
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,507,165
Number of extensions: 143329
Number of successful extensions: 1137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 206
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.3 bits)