RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3368
(169 letters)
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 119 bits (298), Expect = 1e-32
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 15/111 (13%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
++ ++ G+LRG+ + +LGIP+A PPVG RFM P+ +PW G++ A +
Sbjct: 9 LVRVRGGQLRGIRL----KAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATT 64
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
F VC Q + L +M + SEDCLYLN++TP
Sbjct: 65 FQNVCYQYVDTLYPGFEGTEMWNPN-----------RELSEDCLYLNVWTP 104
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 119 bits (299), Expect = 1e-32
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+++ G +RG + +H+Y GIPYA PPV LRF P +PW G++ A
Sbjct: 4 VVQTSSGPVRGRSVTV----QGREVHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATG 59
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKK 148
S C Q+ +++ N SEDCLY+N++ P + +
Sbjct: 60 LSATCVQERYEYFPGFSGEEI-----------WNPNTNVSEDCLYINVWAPAKARLRHGR 108
Query: 149 EEREEKKKEEKKKE 162
+ K+ +
Sbjct: 109 GANGGEHPNGKQAD 122
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 118 bits (296), Expect = 2e-32
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
II K G++RG+ + + +LGIPYA PP+G+LRF PQS W + A
Sbjct: 2 IIATKNGKVRGMQLTVFGGT----VTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATK 57
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
++ C Q + +M + SEDCLYLN++ P
Sbjct: 58 YANSCCQNIDQSFPGFHGSEMWNPNT-----------DLSEDCLYLNVWIP 97
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 117 bits (292), Expect = 7e-32
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+++ G++ G S G + ++LGIP+A PP+G LRF PQ +PW + A S
Sbjct: 5 VVDTVHGKVLGKFVS--LEGFAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNATS 62
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ P+C Q + SEDCLYLNIYTP
Sbjct: 63 YPPMCTQDPKAGQLLSEL---------FTNRKENIPLKLSEDCLYLNIYTP 104
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 117 bits (292), Expect = 8e-32
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
++ K G++ G + + I +LGIP+A PPVG +RF P+ +PW G+ A +
Sbjct: 4 LVNTKSGKVMGTRVPVLSSH----ISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNAST 59
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ C Q + +M + SEDCLYLNI+ P
Sbjct: 60 YPNNCQQYVDEQFPGFSGSEMWNPN-----------REMSEDCLYLNIWVP 99
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 116 bits (290), Expect = 1e-31
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 25/111 (22%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
I+ + G+++G N +H + GIPYA PPVGQ RF AP+ P+ W ++ A +
Sbjct: 4 IVTTQYGKVKGTTE--------NGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATA 55
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ P+CPQ L L QSEDCLY+N++ P
Sbjct: 56 YGPICPQPSDLLSLSY-----------------TELPRQSEDCLYVNVFAP 89
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 111 bits (276), Expect = 1e-29
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 29/111 (26%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+I L R +GV + +LG+ YA+PP+G LRF APQ P L A
Sbjct: 7 VINLGYARYQGVRLE-------AGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATE 59
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTP 139
+ P+C D SEDCL++N++ P
Sbjct: 60 YGPICIGLDEEESPGD----------------------ISEDCLFINVFKP 88
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 110 bits (275), Expect = 2e-29
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 35 GRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADSFSPVCP 94
+ GV+ + + GIP+A PP+ LRF PQ + A+ FSP C
Sbjct: 11 EVISGVLE--------GKVDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFSPACM 62
Query: 95 QKLPNLDDDDFSKKMSKGRLQYYQALMPYLK------NQSEDCLYLNIYTPLQEEEEEK 147
Q P K + ++ + P + +EDCLYLN++ P + + K
Sbjct: 63 QLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPAGTKPDAK 121
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 109 bits (271), Expect = 6e-29
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 56 YLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADSFSPVCPQKLPNLDDDDFSKKMSKGRLQ 115
+LGIP+A PPVG LRF P S+ P C Q+ P ++ K + +
Sbjct: 23 FLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYGPSCMQQNPEGTFEENLGKTALDLVM 82
Query: 116 YYQALMPYLKNQSEDCLYLNIYTPLQEEEEEK 147
+ L QSEDCL +N+ P +
Sbjct: 83 QSKVFQAVL-PQSEDCLTINVVRPPGTKAGAN 113
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 102 bits (254), Expect = 2e-26
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 27/120 (22%)
Query: 29 IIELKQGRLRGVVRSPVHNGNLNNIHMYLGIPYAAPPVGQLRFMAPQSPQPWPGLMIADS 88
+ + G + GV + G+ ++ ++ GIP+AA P P+ W G + A S
Sbjct: 5 SVYTEGGFVEGVNKKLSLFGD--SVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKS 59
Query: 89 FSPVCPQKLPNLDDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKK 148
F C Q D +EDCLYLNI+ P +E
Sbjct: 60 FKKRCLQATLTQDST----------------------YGNEDCLYLNIWVPQGRKEVSHD 97
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 34.3 bits (79), Expect = 0.003
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 103 DDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKE 162
D+ K+M+ L C + + + + E +K+ +E+K + K++
Sbjct: 80 KDWRKEMTNEEKNIITNL--------SKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN 131
Query: 163 EGEEKK 168
E K+
Sbjct: 132 EKLLKE 137
Score = 24.3 bits (53), Expect = 8.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 153 EKKKEEKKKEEGEEKKK 169
+ + E +K+ EEK K
Sbjct: 110 KAQTEARKQMSKEEKLK 126
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 32.8 bits (75), Expect = 0.011
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 103 DDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKKKEEKKKE 162
+DF + + + + C + ++ Q ++E+KK+ ++KK+ + +
Sbjct: 68 NDFLQVLKESGGPLNGIEIKEF----SRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLER 123
Query: 163 EGEEKK 168
E E+
Sbjct: 124 EKFEED 129
Score = 28.9 bits (65), Expect = 0.21
Identities = 8/33 (24%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 137 YTPLQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+T + + + +KE++++ +EKK+ E++K
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKKQI-RLEREK 125
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal
domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 250
Score = 32.1 bits (73), Expect = 0.020
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 VHNGNLNNIHMYLGIPYAAPPVGQLRFMA 73
VHNG+ IHM I A P +G+LRF+A
Sbjct: 84 VHNGD-PIIHMATYIT-AEPSIGELRFIA 110
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 31.1 bits (70), Expect = 0.046
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 143 EEEEKKEEREEKKKEEKKKEEGEEKKK 169
+E +K+ E EEK + K +E EK++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.6 bits (61), Expect = 0.76
Identities = 7/36 (19%), Positives = 23/36 (63%)
Query: 133 YLNIYTPLQEEEEEKKEEREEKKKEEKKKEEGEEKK 168
+ N++ +E ++++E E+ ++ + KE+ E+++
Sbjct: 296 FRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 26.6 bits (58), Expect = 1.6
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 101 DDDDFSKKMSKGRLQYYQALMPYLKNQSEDCLYLNIYTPLQEEEEEKKEEREEKK 155
D KK+ + + + LNIY+ L + E+ E + E K
Sbjct: 209 DAKTIEKKIKSAVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGK 263
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 24.5 bits (53), Expect = 3.6
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 138 TPLQEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+P + + + ++ K+E KK + K
Sbjct: 38 SPCKWHNDAENKKCTLDKEEAKKVADETAKDG 69
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 24.8 bits (54), Expect = 3.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEEKKK 169
+E E E+ +E+ K E K K
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNK 134
Score = 24.8 bits (54), Expect = 4.7
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 141 QEEEEEKKEEREEKKKEEKKKEEGEE 166
E+ +E+++ +E +K +E +E
Sbjct: 113 LAAMLERLQEKDKHAEEVRKNKELKE 138
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 84
Score = 23.9 bits (52), Expect = 5.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 104 DFSKKMSKGRLQYYQALMPYLKNQSEDCLY 133
DF + + + +Y+Q L Y+ +E LY
Sbjct: 2 DFREVIEQ---RYHQLLSRYIAELTETSLY 28
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 24.2 bits (52), Expect = 8.5
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 142 EEEEEKKEERE-EKKKEEKKKEEGEEKK 168
+ EEEK+ R + E++ + E KK
Sbjct: 130 DTEEEKESHRIAVLRAEQRHIRKAESKK 157
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 24.6 bits (52), Expect = 8.7
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 140 LQEEEEEKKEEREEKKKEEKKKEEGEE 166
L++ KE+ K +E+ +E +E
Sbjct: 338 LKKLVSYWKEQAGRKGDDEELEEIQDE 364
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.388
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,382
Number of extensions: 28869
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 90
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)