BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy337
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 62/118 (52%), Gaps = 46/118 (38%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
GITLKMN+ CIVARIMHGGMIHRQ TLHVGDEI+EINGI V NQ+V LQK+L
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKML----- 70
Query: 177 HPYXXXXXXXXXXXXXXXXXXXXNVTRVRLVQFQKNTDEPMREARGSVTFKIVPSYRS 234
RE RGS+TFKIVPSYR
Sbjct: 71 -----------------------------------------REMRGSITFKIVPSYRE 87
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 203 RVRLVQFQKNTDEPM 217
R RLVQFQKNTDEPM
Sbjct: 1 RSRLVQFQKNTDEPM 15
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 44/55 (80%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
GITLK+N++ C VARI+HGGMIHRQ +LHVGDEI EING V N SV+ LQK +
Sbjct: 27 GITLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAM 81
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 43/55 (78%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
GI LK+N++ C VARI+HGGMIHRQ +LHVGDEI EING V N SV+ LQK +
Sbjct: 27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAM 81
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 12/70 (17%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVG-----------NQSVN 165
G+T ++ + G+ ++ARI+HGGM+ +Q LHVGD IKE+NG PVG N S +
Sbjct: 21 GVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNASGS 79
Query: 166 ALQKILTPPP 175
+ KIL+ P
Sbjct: 80 VILKILSGPS 89
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 107 FLHSRFPVNNGITLKMNDE-GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVN 165
+ +R P+ G T+K +++ G IVARI GG R +HVGDE++E+NGIPV ++
Sbjct: 10 LVKNREPL--GATIKKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPE 67
Query: 166 ALQKILT 172
+ +IL
Sbjct: 68 EIIQILA 74
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 123 NDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172
N+ I++RI+ GG + LH GDE+ EINGI + + VN + +L+
Sbjct: 45 NEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS 94
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 121 KMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPV 159
+ D G V+RI GG HR TL VGD + ING+ V
Sbjct: 34 RAGDAG-IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
>pdb|3GGE|A Chain A, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|B Chain B, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|C Chain C, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
Length = 95
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEING 156
G+T+ N G + RI GG+I T+ VGD I+ ING
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESING 58
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEING 156
I+A +MHGG + L++GD+I ING
Sbjct: 36 IIANMMHGGPAEKSGKLNIGDQIMSING 63
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 98 RFQMSYPGTFLHSRFPVNNGITLKMNDEG-----KCIVARIMHGGMIHRQATLHVGDEIK 152
R ++ GT F + +G ++++ G ++R++ GG+ L V DE+
Sbjct: 32 RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVL 91
Query: 153 EINGIPVGNQSVNALQKIL 171
E+NGI V +S++ + ++
Sbjct: 92 EVNGIEVSGKSLDQVTDMM 110
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 112 FPVNNGITLKMNDEG-----KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNA 166
F + +G ++++ G ++R++ GG+ L V DE+ E+NGI V ++++
Sbjct: 47 FYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQ 106
Query: 167 LQKIL 171
+ ++
Sbjct: 107 VTDMM 111
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
I+A +MHGG + L++GD+I ING + ++ Q I+
Sbjct: 32 IIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 74
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEING 156
I+A +MHGG + L++GD+I ING
Sbjct: 32 IIANMMHGGPAEKSGKLNIGDQIMSING 59
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 112 FPVNNGITLKMNDEG-----KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNA 166
F + +G ++++ G ++R++ GG+ L V DE+ E+NGI V ++++
Sbjct: 47 FYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQ 106
Query: 167 LQKIL 171
+ ++
Sbjct: 107 VTDMM 111
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 112 FPVNNGITLKMNDEG-----KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNA 166
F + +G ++++ G ++R++ GG+ L V DE+ E+NGI V ++++
Sbjct: 19 FYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQ 78
Query: 167 LQKIL 171
+ ++
Sbjct: 79 VTDMM 83
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 112 FPVNNGITLKMNDEG-----KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNA 166
F + +G ++++ G ++R++ GG+ L V DE+ E+NGI V ++++
Sbjct: 21 FYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQ 80
Query: 167 LQKIL 171
+ ++
Sbjct: 81 VTDMM 85
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 101 MSYPGTFLHSRFPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGI 157
M GT L V+ GI + +GK V+ + GG+ R L VGD IK +NGI
Sbjct: 14 MKKEGTTLG--LTVSGGI----DKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGI 64
>pdb|1ZL8|B Chain B, Nmr Structure Of L27 Heterodimer From C. Elegans Lin-7
And H. Sapiens Lin-2 Scaffold Proteins
Length = 54
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 48 LAVLQAHDVVAQEIYGEEA 66
+A+LQ HDVVA E+Y +EA
Sbjct: 36 MALLQTHDVVAHEVYSDEA 54
Score = 30.4 bits (67), Expect = 0.87, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 1 AVLQAHDVVAQEIYGEEA 18
A+LQ HDVVA E+Y +EA
Sbjct: 37 ALLQTHDVVAHEVYSDEA 54
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPV 159
++A ++HGG R L +GD + ING +
Sbjct: 40 VIANLLHGGPAERSGALSIGDRLTAINGTSL 70
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 105 GTFLHSRFP----VNNGITLKMNDEGK----CIVARIMHGGMIHRQATLHVGDEIKEING 156
GTF H + P V GIT+ K +++ I G + HR TL +GD++ I+
Sbjct: 107 GTF-HVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDN 165
Query: 157 IPVGNQSVNALQKIL 171
I + + S+ +IL
Sbjct: 166 IRLDSCSMEDAVQIL 180
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPV 159
I+A +M+GG R L +GD+I ING +
Sbjct: 219 ILANMMNGGPAARSGKLSIGDQIMSINGTSL 249
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 117 GITLKMNDE--GKCIVARIMHGGMIHRQATLHVGDEIKEIN 155
GIT+ +E I++ + GG+ R +H+GD I IN
Sbjct: 19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAIN 59
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
GK +V+ + GG R + GDEI ING V + ++ ALQK
Sbjct: 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQK 90
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPP 175
V+++ G R A L VGD+I E+NG+ + + ++ + K+LT
Sbjct: 40 VSKVEEGSSAER-AGLCVGDKITEVNGLSLESTTMGSAVKVLTSSS 84
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGI 157
GI++ ++G V+++ G + H QA L GD++ E NGI
Sbjct: 33 GISIVSGEKGGIYVSKVTVGSIAH-QAGLEYGDQLLEFNGI 72
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD+I +N +
Sbjct: 188 VTKIIEGGAAHKDGRLQIGDKILAVNSV 215
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD++ +N +
Sbjct: 32 VTKIIEGGAAHKDGKLQIGDKLLAVNSV 59
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD+I +N +
Sbjct: 134 VTKIIEGGAAHKDGRLQIGDKILAVNSV 161
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPV 159
V +I+ GG H+ L +GD++ +N + +
Sbjct: 42 VTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD+I +N +
Sbjct: 131 VTKIIEGGAAHKDGRLQIGDKILAVNSV 158
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPV 159
V +I+ GG H+ L +GD++ +N + +
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 121 KMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
K ND G V+ I+ GG+ L GD+I +NG V N + A+ +L
Sbjct: 25 KRNDTG-VFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD+I +N +
Sbjct: 37 VTKIIEGGAAHKDGRLQIGDKILAVNSV 64
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD++ +N +
Sbjct: 43 VTKIIEGGAAHKDGKLQIGDKLLAVNNV 70
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD++ +N +
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
>pdb|1Y74|B Chain B, Solution Structure Of Mlin-2MLIN-7 L27 Domain Complex
pdb|1Y74|D Chain D, Solution Structure Of Mlin-2MLIN-7 L27 Domain Complex
Length = 50
Score = 27.3 bits (59), Expect = 7.6, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 48 LAVLQAHDVVAQEIYGE 64
+A+LQ HDVVA E+Y +
Sbjct: 34 MALLQTHDVVAHEVYSD 50
>pdb|1B8X|A Chain A, Glutathione S-transferase Fused With The Nuclear Matrix
Targeting Signal Of The Transcription Factor Aml-1
Length = 280
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 100 QMSYPGTFLHSRFPVNNGITLKMNDEG 126
+M YPG F +S PV +GI + M+ G
Sbjct: 233 RMHYPGAFTYSPTPVTSGIGIGMSAMG 259
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD++ +N +
Sbjct: 33 VTKIIEGGAAHKDGKLQIGDKLLAVNNV 60
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172
+A+I+ GG + L G ++ E NGIP+ +++ +Q I++
Sbjct: 53 IAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD+I +N +
Sbjct: 141 VTKIIEGGAAHKDGRLQIGDKILAVNSV 168
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPV 159
++R++ GG+ R L GD++ +NG+ V
Sbjct: 34 ISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD++ +N +
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 3 LQAHDVVAQEIYGEEAVRVTPPWLTVLALPGWRHLWPCLAGGQLDLAVLQAHDVVAQEIY 62
L AHD +AQ ++ V +TPP + + + R +P G L LQ HDV +
Sbjct: 300 LLAHDGIAQILHDTGMVNLTPPEIVEMGIT--RTFFPHGIGHFLG---LQVHDVGG--LV 352
Query: 63 GEEAVRVTPPPI---HPYLNGFKFTRGTLLKKIFS 94
++ R TP P HP+L + TR +++F+
Sbjct: 353 NDD--RGTPKPAPDDHPFL---RCTRMVEARQVFT 382
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGI 157
V +I+ GG H+ L +GD++ +N +
Sbjct: 45 VTKIIEGGAAHKDGKLQIGDKLLAVNNV 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,142,763
Number of Sequences: 62578
Number of extensions: 261345
Number of successful extensions: 643
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 65
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)