Query psy337
Match_columns 255
No_of_seqs 187 out of 424
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 23:18:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 1.8E-30 4E-35 253.7 11.6 141 44-253 86-227 (542)
2 PF00595 PDZ: PDZ domain (Also 99.4 8.1E-13 1.8E-17 97.9 9.4 65 97-171 2-69 (81)
3 KOG3550|consensus 99.4 3E-13 6.4E-18 117.1 6.9 68 94-171 91-160 (207)
4 KOG3549|consensus 99.1 8.5E-11 1.8E-15 112.5 7.1 70 93-171 54-125 (505)
5 KOG3605|consensus 99.1 2.7E-10 5.9E-15 115.1 7.2 72 91-171 643-718 (829)
6 KOG3606|consensus 99.0 5.1E-10 1.1E-14 104.2 5.3 74 91-172 156-240 (358)
7 KOG3209|consensus 98.9 1.5E-09 3.2E-14 110.8 7.8 67 96-171 756-823 (984)
8 KOG3551|consensus 98.9 1.7E-09 3.6E-14 104.6 4.0 71 93-172 84-156 (506)
9 cd00992 PDZ_signaling PDZ doma 98.8 4.4E-08 9.5E-13 71.3 9.7 67 95-171 2-70 (82)
10 cd00136 PDZ PDZ domain, also c 98.7 1.1E-07 2.5E-12 67.7 8.6 56 115-171 2-57 (70)
11 smart00228 PDZ Domain present 98.6 3.9E-07 8.4E-12 66.0 9.8 57 114-171 12-70 (85)
12 KOG3209|consensus 98.4 4.4E-07 9.6E-12 93.1 7.1 69 93-171 898-968 (984)
13 PF13180 PDZ_2: PDZ domain; PD 98.2 3.8E-06 8.3E-11 62.6 6.5 54 115-171 2-56 (82)
14 cd00988 PDZ_CTP_protease PDZ d 98.1 9E-06 1.9E-10 59.9 6.9 55 115-171 3-57 (85)
15 KOG3571|consensus 98.1 3.9E-06 8.5E-11 83.7 5.1 58 116-173 263-324 (626)
16 KOG3938|consensus 98.0 4.3E-06 9.2E-11 78.2 3.1 70 94-173 127-196 (334)
17 COG0793 Prc Periplasmic protea 97.9 6.8E-05 1.5E-09 72.6 9.7 58 113-171 99-156 (406)
18 cd00990 PDZ_glycyl_aminopeptid 97.7 8.4E-05 1.8E-09 54.2 5.3 44 116-161 3-46 (80)
19 KOG1892|consensus 97.7 0.00015 3.3E-09 77.0 8.8 69 93-172 933-1006(1629)
20 KOG3605|consensus 97.6 3.1E-05 6.8E-10 79.2 2.1 52 114-171 749-800 (829)
21 cd00989 PDZ_metalloprotease PD 97.5 0.00023 5E-09 51.5 5.8 52 116-171 3-54 (79)
22 PRK11186 carboxy-terminal prot 97.5 0.00035 7.6E-09 71.9 9.0 58 114-172 244-306 (667)
23 TIGR00225 prc C-terminal pepti 97.5 0.0002 4.4E-09 66.6 6.8 56 114-171 51-106 (334)
24 PLN00049 carboxyl-terminal pro 97.3 0.00053 1.1E-08 65.6 7.1 57 114-171 85-146 (389)
25 KOG3580|consensus 97.3 0.00032 6.9E-09 71.9 5.5 67 93-171 407-473 (1027)
26 cd00986 PDZ_LON_protease PDZ d 97.3 0.00058 1.3E-08 50.3 5.2 41 127-171 9-49 (79)
27 KOG3580|consensus 97.2 0.00048 1E-08 70.6 5.4 67 95-172 10-84 (1027)
28 KOG3651|consensus 97.1 0.00098 2.1E-08 63.8 6.6 68 95-171 6-75 (429)
29 cd00991 PDZ_archaeal_metallopr 97.1 0.0011 2.4E-08 49.3 5.5 43 126-171 10-52 (79)
30 cd00987 PDZ_serine_protease PD 97.1 0.0011 2.4E-08 48.8 5.0 43 126-171 24-66 (90)
31 KOG3542|consensus 97.0 0.0017 3.6E-08 67.6 7.3 121 27-171 483-606 (1283)
32 KOG3553|consensus 97.0 0.00069 1.5E-08 55.8 3.6 47 125-172 58-104 (124)
33 KOG3552|consensus 96.9 0.00091 2E-08 71.1 4.5 64 94-172 56-119 (1298)
34 TIGR02037 degP_htrA_DO peripla 96.5 0.0054 1.2E-07 58.9 6.1 54 115-171 235-299 (428)
35 PF02828 L27: L27 domain; Int 96.5 0.0011 2.4E-08 47.3 0.9 24 41-64 29-52 (56)
36 PF14685 Tricorn_PDZ: Tricorn 96.3 0.0064 1.4E-07 47.9 4.6 54 115-171 2-64 (88)
37 TIGR02037 degP_htrA_DO peripla 96.2 0.0099 2.1E-07 57.1 6.3 43 126-171 362-404 (428)
38 KOG1738|consensus 95.9 0.011 2.3E-07 60.7 4.9 66 113-178 212-277 (638)
39 TIGR02038 protease_degS peripl 95.6 0.026 5.7E-07 53.3 6.0 43 126-171 278-320 (351)
40 PRK10942 serine endoprotease; 95.5 0.037 8E-07 54.7 6.9 43 126-171 311-353 (473)
41 PRK10898 serine endoprotease; 95.4 0.081 1.8E-06 50.2 8.8 43 126-171 279-321 (353)
42 PRK10139 serine endoprotease; 95.2 0.051 1.1E-06 53.4 7.0 43 126-171 290-332 (455)
43 TIGR03279 cyano_FeS_chp putati 95.1 0.1 2.2E-06 51.7 8.5 85 130-240 2-89 (433)
44 PRK10942 serine endoprotease; 95.1 0.058 1.3E-06 53.3 6.8 42 127-171 409-450 (473)
45 PRK10139 serine endoprotease; 94.2 0.079 1.7E-06 52.1 5.3 43 126-171 390-432 (455)
46 TIGR00054 RIP metalloprotease 93.8 0.097 2.1E-06 50.8 5.2 42 127-171 204-245 (420)
47 TIGR01713 typeII_sec_gspC gene 93.6 0.2 4.3E-06 46.1 6.4 54 115-171 178-233 (259)
48 PRK10779 zinc metallopeptidase 93.5 0.11 2.4E-06 50.6 5.1 42 127-171 222-263 (449)
49 KOG0609|consensus 92.9 0.12 2.6E-06 52.4 4.2 40 173-230 105-144 (542)
50 PRK10779 zinc metallopeptidase 92.4 0.12 2.7E-06 50.3 3.5 42 127-171 127-168 (449)
51 KOG1320|consensus 91.9 0.39 8.4E-06 48.2 6.4 42 127-171 399-440 (473)
52 KOG3532|consensus 91.3 0.57 1.2E-05 49.4 7.0 57 113-172 385-441 (1051)
53 smart00569 L27 domain in recep 90.5 0.19 4.2E-06 34.5 2.0 24 41-64 28-51 (55)
54 TIGR00054 RIP metalloprotease 90.4 0.29 6.4E-06 47.5 3.9 42 127-171 129-170 (420)
55 PF04495 GRASP55_65: GRASP55/6 89.8 0.64 1.4E-05 39.2 4.9 56 114-171 26-86 (138)
56 COG3975 Predicted protease wit 88.9 0.36 7.8E-06 49.2 3.2 41 115-157 452-492 (558)
57 TIGR02860 spore_IV_B stage IV 87.2 1.2 2.5E-05 44.0 5.5 55 112-171 94-155 (402)
58 KOG0606|consensus 85.8 1.9 4E-05 47.6 6.6 65 96-171 629-702 (1205)
59 COG0265 DegQ Trypsin-like seri 83.0 1.9 4.1E-05 40.2 4.6 42 127-171 271-312 (347)
60 KOG3129|consensus 80.0 2.2 4.8E-05 39.3 3.8 35 128-163 141-175 (231)
61 PF12812 PDZ_1: PDZ-like domai 79.4 2.6 5.6E-05 32.3 3.5 43 127-173 32-74 (78)
62 COG3480 SdrC Predicted secrete 79.2 7.8 0.00017 37.7 7.4 41 127-171 131-171 (342)
63 PRK09681 putative type II secr 76.2 7.8 0.00017 36.6 6.4 52 116-171 196-249 (276)
64 KOG1421|consensus 66.3 7.2 0.00016 41.6 4.1 43 125-171 302-344 (955)
65 KOG4371|consensus 43.0 27 0.00059 39.0 3.9 69 94-171 1246-1315(1332)
66 KOG3834|consensus 39.5 49 0.0011 33.5 4.8 80 128-229 17-101 (462)
67 KOG3834|consensus 39.3 66 0.0014 32.6 5.6 97 94-214 78-182 (462)
68 COG3031 PulC Type II secretory 34.3 69 0.0015 30.4 4.6 45 114-171 205-249 (275)
69 KOG1421|consensus 28.0 1E+02 0.0022 33.4 5.1 43 126-172 862-904 (955)
70 COG0750 Predicted membrane-ass 23.5 1.2E+02 0.0025 28.3 4.2 40 129-171 132-171 (375)
71 PF11874 DUF3394: Domain of un 22.8 1.3E+02 0.0028 27.0 4.1 38 116-155 113-150 (183)
72 KOG4371|consensus 22.2 62 0.0013 36.3 2.3 57 114-172 1158-1214(1332)
No 1
>KOG0609|consensus
Probab=99.97 E-value=1.8e-30 Score=253.66 Aligned_cols=141 Identities=45% Similarity=0.651 Sum_probs=124.6
Q ss_pred chhhHHhhhhhhhHHHhhhCccccccCCCCCCCCCCCccccccccccCcccceeeeeecCCCccccccCCCcceEEEEeC
Q psy337 44 GQLDLAVLQAHDVVAQEIYGEEAVRVTPPPIHPYLNGFKFTRGTLLKKIFSPISRFQMSYPGTFLHSRFPVNNGITLKMN 123 (255)
Q Consensus 44 ~~~~qaLL~aHD~VA~k~y~~~~~~~~ppp~~p~~~~~~~~~~~~~~~~~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~ 123 (255)
-+|++++|++||+||++ |+. +|.+|++++..+ .....+|+|+|+|+. ++|||+|+|.+
T Consensus 86 ~ph~~~~l~ahd~vas~-~~~-------~~~~p~l~~~~~-----e~~~~vriv~i~k~~---------~eplG~Tik~~ 143 (542)
T KOG0609|consen 86 TPHLQALLQAHDTVASK-YDQ-------PPFSPYLNPESP-----EPVEAVRIVRIVKNT---------GEPLGATIRVE 143 (542)
T ss_pred chhHhHHHHHhHHHhhc-cCC-------CCCccccCCCcc-----cccceeEEEEEeecC---------CCccceEEEec
Confidence 59999999999999999 862 344577665321 122357999999998 89999999997
Q ss_pred CCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcCCCCCccccCCCCCCCCCCCCCCCcccCCcce
Q psy337 124 DEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPIHPYLNGSDDPDDLDTPNGDIDIDNVTR 203 (255)
Q Consensus 124 e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLtppp~~~~~ng~~~p~~~~~p~~~~~~~~~~~ 203 (255)
+++.|+||||||||+++|+|+||+||+|+||||++|.++.+++++++|
T Consensus 144 e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l-------------------------------- 191 (542)
T KOG0609|consen 144 EDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELL-------------------------------- 191 (542)
T ss_pred cCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHH--------------------------------
Confidence 766899999999999999999999999999999999999999999999
Q ss_pred eEEEeeeecCCchhhcccCeEEEEEcCCCCCCCCCce-eeeccCCCCcccc
Q psy337 204 VRLVQFQKNTDEPMREARGSVTFKIVPSYRSAPPPCE-VQIYPNLPKYVQS 253 (255)
Q Consensus 204 vrlVq~~K~t~ePLG~~~g~vT~k~~p~~~~~~~~~~-~~~~~~~~~~~~~ 253 (255)
++++|++|||++|+|+ ..++++ +||||+|+|.++.
T Consensus 192 --------------~~~~G~itfkiiP~~~-~~~~~~~~~vra~FdYdP~~ 227 (542)
T KOG0609|consen 192 --------------RNSRGSITFKIIPSYR-PPPQQQVVFVRALFDYDPKE 227 (542)
T ss_pred --------------HhCCCcEEEEEccccc-CCCceeeeeehhhcCcCccc
Confidence 8899999999999999 788888 9999999998763
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.44 E-value=8.1e-13 Score=97.91 Aligned_cols=65 Identities=29% Similarity=0.385 Sum_probs=59.9
Q ss_pred eeeeecCCCccccccCCCcceEEEEeCCC---CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 97 SRFQMSYPGTFLHSRFPVNNGITLKMNDE---GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 97 V~l~K~~~~~~~~s~~~epLGiTIk~~e~---g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
|.+.|+. ++++|++++.+.+ ..++|++|.+||+|++.| |++||+|++|||+++.+.+++++++++
T Consensus 2 v~l~k~~---------~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l 69 (81)
T PF00595_consen 2 VTLEKSG---------NGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLL 69 (81)
T ss_dssp EEEEEST---------TSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHH
T ss_pred EEEEeCC---------CCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHH
Confidence 6778866 7999999998765 379999999999999999 999999999999999999999999999
No 3
>KOG3550|consensus
Probab=99.42 E-value=3e-13 Score=117.13 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=64.6
Q ss_pred cceeeeeecCCCccccccCCCcceEEEEeCC--CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 94 SPISRFQMSYPGTFLHSRFPVNNGITLKMND--EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 94 ~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e--~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.|+|.+-|.. |+||+.+.++. +.+|||+||++||.|||-|.|+-||+++.|||++|.+..|+.++++|
T Consensus 91 prvvelpktd----------eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavell 160 (207)
T KOG3550|consen 91 PRVVELPKTD----------EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELL 160 (207)
T ss_pred CceeecCccc----------cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHH
Confidence 5999999985 99999998876 56899999999999999999999999999999999999999999999
No 4
>KOG3549|consensus
Probab=99.13 E-value=8.5e-11 Score=112.46 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=65.2
Q ss_pred ccceeeeeecCCCccccccCCCcceEEEEeCCC--CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhh
Q psy337 93 FSPISRFQMSYPGTFLHSRFPVNNGITLKMNDE--GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKI 170 (255)
Q Consensus 93 ~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~--g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~i 170 (255)
..|+|+|.+.+ -.+||++||++.. -+++|+||.+...||.+|+|.+||.|+.|||+.|+.++|+|++++
T Consensus 54 ~eRtVtirRQ~---------vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~i 124 (505)
T KOG3549|consen 54 KERTVTIRRQK---------VGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNI 124 (505)
T ss_pred CceeEEEEeee---------cCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHH
Confidence 35999999988 6889999998873 489999999999999999999999999999999999999999999
Q ss_pred c
Q psy337 171 L 171 (255)
Q Consensus 171 L 171 (255)
|
T Consensus 125 L 125 (505)
T KOG3549|consen 125 L 125 (505)
T ss_pred H
Confidence 9
No 5
>KOG3605|consensus
Probab=99.06 E-value=2.7e-10 Score=115.09 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=67.2
Q ss_pred CcccceeeeeecCCCccccccCCCcceEEEEeCCCCcE----EEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHH
Q psy337 91 KIFSPISRFQMSYPGTFLHSRFPVNNGITLKMNDEGKC----IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNA 166 (255)
Q Consensus 91 ~~~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~g~I----vIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~ee 166 (255)
.++.|-|.+.|.+ +|.||+.|....||.+ +||.+||||+|+|+|.|.+||+|+.|||.++.|.+...
T Consensus 643 kE~qKEVvv~K~k---------GEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLst 713 (829)
T KOG3605|consen 643 KENQKEVVLEKHK---------GEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLST 713 (829)
T ss_pred hcccceeeeeccc---------CceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHH
Confidence 4567999999999 9999999997778875 69999999999999999999999999999999999999
Q ss_pred HHhhc
Q psy337 167 LQKIL 171 (255)
Q Consensus 167 l~~iL 171 (255)
+|.++
T Consensus 714 cQs~I 718 (829)
T KOG3605|consen 714 CQSII 718 (829)
T ss_pred HHHHH
Confidence 99999
No 6
>KOG3606|consensus
Probab=98.98 E-value=5.1e-10 Score=104.24 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=64.0
Q ss_pred CcccceeeeeecCCCccccccCCCcceEEEEeCC------C-----CcEEEEEeeccchhhhhcccCCCCeEEeECCeec
Q psy337 91 KIFSPISRFQMSYPGTFLHSRFPVNNGITLKMND------E-----GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPV 159 (255)
Q Consensus 91 ~~~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e------~-----g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V 159 (255)
+++-|.|++.|-.+ +.|||+.|+.+. . -+|||+|++.||.|+-.|+|.+.||++|||||.|
T Consensus 156 PEtHRRVRL~khG~--------ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEV 227 (358)
T KOG3606|consen 156 PETHRRVRLHKHGS--------EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEV 227 (358)
T ss_pred chhhhheehhhcCC--------CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEe
Confidence 34558899999542 789999987543 1 2689999999999999999999999999999999
Q ss_pred cCCCHHHHHhhcC
Q psy337 160 GNQSVNALQKILT 172 (255)
Q Consensus 160 ~g~~~eel~~iLt 172 (255)
.|++.+++-+||.
T Consensus 228 aGKTLDQVTDMMv 240 (358)
T KOG3606|consen 228 AGKTLDQVTDMMV 240 (358)
T ss_pred ccccHHHHHHHHh
Confidence 9999999999995
No 7
>KOG3209|consensus
Probab=98.95 E-value=1.5e-09 Score=110.79 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=57.4
Q ss_pred eeeeeecCCCccccccCCCcceEEEEeCCCC-cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 96 ISRFQMSYPGTFLHSRFPVNNGITLKMNDEG-KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 96 iV~l~K~~~~~~~~s~~~epLGiTIk~~e~g-~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
-|.|+++. +|+.|+.|....+. .--|+||+.|++|||+|.|+|||.|+.|||+++.+++|.++++++
T Consensus 756 DV~lhR~E---------NeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LI 823 (984)
T KOG3209|consen 756 DVVLHRKE---------NEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLI 823 (984)
T ss_pred eeEEeccc---------CCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHH
Confidence 35566655 78999998654432 344999999999999999999999999999999999999999999
No 8
>KOG3551|consensus
Probab=98.85 E-value=1.7e-09 Score=104.59 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=65.6
Q ss_pred ccceeeeeecCCCccccccCCCcceEEEEeCCC--CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhh
Q psy337 93 FSPISRFQMSYPGTFLHSRFPVNNGITLKMNDE--GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKI 170 (255)
Q Consensus 93 ~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~--g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~i 170 (255)
..|.|+++|.. ..+|||+||++.+ -+|+|++|.+|-+||+.+.|.+||.|++|||.+++..+|+|+++.
T Consensus 84 ~~R~V~V~K~d---------~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqa 154 (506)
T KOG3551|consen 84 AERRVRVVKQD---------AGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQA 154 (506)
T ss_pred ccceeEEEEec---------CCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHH
Confidence 34999999987 7899999998763 389999999999999999999999999999999999999999999
Q ss_pred cC
Q psy337 171 LT 172 (255)
Q Consensus 171 Lt 172 (255)
|+
T Consensus 155 LK 156 (506)
T KOG3551|consen 155 LK 156 (506)
T ss_pred HH
Confidence 95
No 9
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.82 E-value=4.4e-08 Score=71.31 Aligned_cols=67 Identities=27% Similarity=0.417 Sum_probs=57.7
Q ss_pred ceeeeeecCCCccccccCCCcceEEEEeCCC--CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 95 PISRFQMSYPGTFLHSRFPVNNGITLKMNDE--GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 95 RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~--g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+.+.+.++. ..++|+++....+ ..++|..|..|++|++ +.|+.||+|++|||..+..++.+++.+++
T Consensus 2 ~~~~l~~~~---------~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l 70 (82)
T cd00992 2 RTVTLRKDP---------GGGLGFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELL 70 (82)
T ss_pred EEEEEEeCC---------CCCcCEEEeCcccCCCCeEEEEECCCChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHH
Confidence 346677764 5889999986542 4699999999999999 77999999999999999999999999999
No 10
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.71 E-value=1.1e-07 Score=67.68 Aligned_cols=56 Identities=29% Similarity=0.478 Sum_probs=51.3
Q ss_pred cceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 115 NNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 115 pLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
++|+++..+++..++|.++..+|+|++ +.|++||+|++|||.++.+.+++++.++|
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l 57 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELL 57 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 589999976554799999999999998 77999999999999999999999999999
No 11
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.64 E-value=3.9e-07 Score=66.02 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=51.2
Q ss_pred CcceEEEEeCCC--CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 114 VNNGITLKMNDE--GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 114 epLGiTIk~~e~--g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
..+|+++..+.. ..++|.+|..++++++.| |.+||+|++|||+.+.+.+..+...++
T Consensus 12 ~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~ 70 (85)
T smart00228 12 GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLL 70 (85)
T ss_pred CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 689999986543 579999999999999988 999999999999999999888888777
No 12
>KOG3209|consensus
Probab=98.42 E-value=4.4e-07 Score=93.13 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=64.2
Q ss_pred ccceeeeeecCCCccccccCCCcceEEEEeCCCC--cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhh
Q psy337 93 FSPISRFQMSYPGTFLHSRFPVNNGITLKMNDEG--KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKI 170 (255)
Q Consensus 93 ~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~g--~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~i 170 (255)
..-.|.+.|.+ .+.|++|++++.+ .+||=|+...|+|.|.|.+++||+|.||||++-.+++|+.+++|
T Consensus 898 ~~~~VelErG~----------kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIel 967 (984)
T KOG3209|consen 898 DLYTVELERGA----------KGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIEL 967 (984)
T ss_pred CeeEEEeeccc----------cccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHH
Confidence 45679999987 8999999998743 79999999999999999999999999999999999999999999
Q ss_pred c
Q psy337 171 L 171 (255)
Q Consensus 171 L 171 (255)
+
T Consensus 968 I 968 (984)
T KOG3209|consen 968 I 968 (984)
T ss_pred H
Confidence 9
No 13
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.23 E-value=3.8e-06 Score=62.62 Aligned_cols=54 Identities=33% Similarity=0.519 Sum_probs=45.4
Q ss_pred cceEEEEeCCC-CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 115 NNGITLKMNDE-GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 115 pLGiTIk~~e~-g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.||+++..... +.++|..+..||+|++.| |+.||+|++|||+.+. +.+++..+|
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l 56 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNIL 56 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHH
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHH
Confidence 48999987553 479999999999999988 9999999999999994 568888888
No 14
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.14 E-value=9e-06 Score=59.91 Aligned_cols=55 Identities=27% Similarity=0.533 Sum_probs=48.9
Q ss_pred cceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 115 NNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 115 pLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.||+++..+ ...++|++|..++++++. .|+.||+|++|||+.+.+.+++++..++
T Consensus 3 ~lG~~~~~~-~~~~~V~~v~~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l 57 (85)
T cd00988 3 GIGLELKYD-DGGLVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLL 57 (85)
T ss_pred EEEEEEEEc-CCeEEEEEecCCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHh
Confidence 589999864 357999999999999995 7899999999999999988888998888
No 15
>KOG3571|consensus
Probab=98.08 E-value=3.9e-06 Score=83.67 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=53.7
Q ss_pred ceEEEEeCC----CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcCC
Q psy337 116 NGITLKMND----EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTP 173 (255)
Q Consensus 116 LGiTIk~~e----~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLtp 173 (255)
||++|.+.. +|+|||+.||+||+.+..|.+.+||.|+.||-+++++++-+|++++|.+
T Consensus 263 LGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE 324 (626)
T KOG3571|consen 263 LGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE 324 (626)
T ss_pred ceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHH
Confidence 999998622 5789999999999999999999999999999999999999999999964
No 16
>KOG3938|consensus
Probab=97.98 E-value=4.3e-06 Score=78.16 Aligned_cols=70 Identities=26% Similarity=0.376 Sum_probs=65.0
Q ss_pred cceeeeeecCCCccccccCCCcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcCC
Q psy337 94 SPISRFQMSYPGTFLHSRFPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTP 173 (255)
Q Consensus 94 ~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLtp 173 (255)
.+-|+++|+. ..||+||..|.-|-.||-||-.|+.+||.-.+.|||-|-.|||+++.|+.|-|+..+|++
T Consensus 127 ~kEv~v~Kse----------dalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKe 196 (334)
T KOG3938|consen 127 AKEVEVVKSE----------DALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKE 196 (334)
T ss_pred ceeEEEEecc----------cccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHh
Confidence 4789999987 789999997766789999999999999999999999999999999999999999999964
No 17
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=6.8e-05 Score=72.64 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=52.2
Q ss_pred CCcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 113 PVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 113 ~epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
-+++|+++...+.+.+.|...+.|++|++.| |++||.|..|||.++.+.+.+++++.|
T Consensus 99 ~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~i 156 (406)
T COG0793 99 FGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLI 156 (406)
T ss_pred ccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHh
Confidence 3678999987543678899999999999999 999999999999999999999999888
No 18
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.69 E-value=8.4e-05 Score=54.24 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=38.1
Q ss_pred ceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccC
Q psy337 116 NGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN 161 (255)
Q Consensus 116 LGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g 161 (255)
+|+.+..+ ++.++|+.|..+++|++.| |++||+|++|||..+..
T Consensus 3 ~G~~~~~~-~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 3 LGLTLDKE-EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred ccEEEEcc-CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 68888754 4569999999999999976 89999999999999864
No 19
>KOG1892|consensus
Probab=97.67 E-value=0.00015 Score=77.03 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=59.4
Q ss_pred ccceeeeeecCCCccccccCCCcceEEEEeCC-----CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHH
Q psy337 93 FSPISRFQMSYPGTFLHSRFPVNNGITLKMND-----EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNAL 167 (255)
Q Consensus 93 ~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e-----~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel 167 (255)
.+-.|.|.|+. ++|++|..-. .-+|||-.+++||+||..|.|..||+++.|||.++.|.+-|.+
T Consensus 933 ei~~vtL~Knn-----------GmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErA 1001 (1629)
T KOG1892|consen 933 EIITVTLKKNN-----------GMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERA 1001 (1629)
T ss_pred ceEEEEEeccC-----------CceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHH
Confidence 36778888886 6777775322 1279999999999999999999999999999999999999999
Q ss_pred HhhcC
Q psy337 168 QKILT 172 (255)
Q Consensus 168 ~~iLt 172 (255)
.++|+
T Consensus 1002 A~lmt 1006 (1629)
T KOG1892|consen 1002 ARLMT 1006 (1629)
T ss_pred HHHHh
Confidence 99997
No 20
>KOG3605|consensus
Probab=97.57 E-value=3.1e-05 Score=79.21 Aligned_cols=52 Identities=29% Similarity=0.554 Sum_probs=47.2
Q ss_pred CcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 114 VNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 114 epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.-|||++.. | +|-.+|.||.|+| |.+.||-.|.||||++|....|+.++++|
T Consensus 749 yQLGFSVQN---G--iICSLlRGGIAER-GGVRVGHRIIEINgQSVVA~pHekIV~lL 800 (829)
T KOG3605|consen 749 YQLGFSVQN---G--IICSLLRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVQLL 800 (829)
T ss_pred hhccceeeC---c--Eeehhhcccchhc-cCceeeeeEEEECCceEEeccHHHHHHHH
Confidence 448999884 2 5777899999999 99999999999999999999999999999
No 21
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.54 E-value=0.00023 Score=51.51 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=41.7
Q ss_pred ceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 116 NGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 116 LGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+|++.-.. ...++|++|.++++|++.| |+.||+|.+|||+.+. +.+++..+|
T Consensus 3 ~~~~~g~~-~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l 54 (79)
T cd00989 3 LGFVPGGP-PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAV 54 (79)
T ss_pred eeEeccCC-ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHH
Confidence 45554432 2358999999999999865 8999999999999998 458888888
No 22
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.53 E-value=0.00035 Score=71.89 Aligned_cols=58 Identities=21% Similarity=0.428 Sum_probs=50.9
Q ss_pred CcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeEC--C---eeccCCCHHHHHhhcC
Q psy337 114 VNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEIN--G---IPVGNQSVNALQKILT 172 (255)
Q Consensus 114 epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVN--G---i~V~g~~~eel~~iLt 172 (255)
++.|+++... ++.++|.+|+.||+|++++.|++||.|+.|| | +++.+.+.++++++|.
T Consensus 244 ~GIGa~l~~~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lir 306 (667)
T PRK11186 244 EGIGAVLQMD-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIK 306 (667)
T ss_pred eEEEEEEEEe-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhc
Confidence 5789999864 4579999999999999999999999999999 4 4677899999999994
No 23
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.53 E-value=0.0002 Score=66.61 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=49.3
Q ss_pred CcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 114 VNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 114 epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
..+|+.+... ++.++|..|..||+|++.| |+.||+|++|||+.+.+.+.+++..+|
T Consensus 51 ~~lG~~~~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l 106 (334)
T TIGR00225 51 EGIGIQVGMD-DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALI 106 (334)
T ss_pred EEEEEEEEEE-CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhc
Confidence 4589998864 4679999999999999988 999999999999999988778888777
No 24
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.34 E-value=0.00053 Score=65.65 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=48.5
Q ss_pred CcceEEEEeCCC-----CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 114 VNNGITLKMNDE-----GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 114 epLGiTIk~~e~-----g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.++|+.+...+. ..++|..+..||+|++.| |+.||+|++|||++|.+.+.+++..+|
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l 146 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRL 146 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 468888765432 169999999999999987 799999999999999998888888888
No 25
>KOG3580|consensus
Probab=97.31 E-value=0.00032 Score=71.90 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=59.4
Q ss_pred ccceeeeeecCCCccccccCCCcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 93 FSPISRFQMSYPGTFLHSRFPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 93 ~~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+.|+|+|.|.. ..|+-+.++.+-+||||-|..|++|++.| |+.||+|+.||.+++++...+|++..|
T Consensus 407 ~tk~VrF~KGd-----------SvGLRLAGGNDVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfL 473 (1027)
T KOG3580|consen 407 NTKMVRFKKGD-----------SVGLRLAGGNDVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFL 473 (1027)
T ss_pred CceeEEeecCC-----------eeeeEeccCCceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHH
Confidence 46999999964 68888887765579999999999999965 689999999999999999999999888
No 26
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.28 E-value=0.00058 Score=50.27 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=36.7
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+++|+.+..|++|+. | |+.||+|++|||..+. +.+++..+|
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l 49 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYI 49 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHH
Confidence 599999999999986 7 9999999999999997 457888888
No 27
>KOG3580|consensus
Probab=97.19 E-value=0.00048 Score=70.62 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=58.7
Q ss_pred ceeeeeecCCCccccccCCCcceEEEEeCCC------C--cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHH
Q psy337 95 PISRFQMSYPGTFLHSRFPVNNGITLKMNDE------G--KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNA 166 (255)
Q Consensus 95 RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~------g--~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~ee 166 (255)
-.|.|+|.+ .-+.||.|.++-+ | .|+|+-+++||+|+ |+|+.||.|.-|||+++.+..|.-
T Consensus 10 hTvTL~kdp---------~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haF 78 (1027)
T KOG3580|consen 10 HTVTLQKDP---------KRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAF 78 (1027)
T ss_pred heeeeecCC---------CCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHH
Confidence 568899988 7889999976542 2 68999999999998 799999999999999999999999
Q ss_pred HHhhcC
Q psy337 167 LQKILT 172 (255)
Q Consensus 167 l~~iLt 172 (255)
++++|.
T Consensus 79 AvQqLr 84 (1027)
T KOG3580|consen 79 AVQQLR 84 (1027)
T ss_pred HHHHHH
Confidence 988885
No 28
>KOG3651|consensus
Probab=97.14 E-value=0.00098 Score=63.80 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=58.3
Q ss_pred ceeeeeecCCCccccccCCCcceEEEEeCCC--CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 95 PISRFQMSYPGTFLHSRFPVNNGITLKMNDE--GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 95 RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~--g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
-.|.+.|.. ..-.|++|-++.- -.++|-.|.-+.+|.+.|.+..||+|..|||++|.|++--++.+|+
T Consensus 6 ~~v~ltKD~---------~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmI 75 (429)
T KOG3651|consen 6 ETVELTKDE---------KNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMI 75 (429)
T ss_pred CcEEEeecc---------ccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHH
Confidence 457888876 3446999987652 2468999999999999999999999999999999999999999888
No 29
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.13 E-value=0.0011 Score=49.33 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=38.1
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+++|.++..+++|++ ..|+.||+|++|||..+. +.+++..+|
T Consensus 10 ~Gv~V~~V~~~spa~~-aGL~~GDiI~~Ing~~v~--~~~d~~~~l 52 (79)
T cd00991 10 AGVVIVGVIVGSPAEN-AVLHTGDVIYSINGTPIT--TLEDFMEAL 52 (79)
T ss_pred CcEEEEEECCCChHHh-cCCCCCCEEEEECCEEcC--CHHHHHHHH
Confidence 4699999999999987 569999999999999998 568888888
No 30
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.08 E-value=0.0011 Score=48.81 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=37.2
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
++++|.+|..+++|++.| |+.||+|.+|||+.+.. .+++.+++
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l 66 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRAL 66 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHH
Confidence 469999999999999865 79999999999999974 46777777
No 31
>KOG3542|consensus
Probab=97.02 E-value=0.0017 Score=67.64 Aligned_cols=121 Identities=21% Similarity=0.144 Sum_probs=82.6
Q ss_pred eeeccccchhcccccCCchhhHHhhhhhhhHHHhhhCccccccCCCCCCCCCCCccccccccccCcccceeeeee-cCCC
Q psy337 27 TVLALPGWRHLWPCLAGGQLDLAVLQAHDVVAQEIYGEEAVRVTPPPIHPYLNGFKFTRGTLLKKIFSPISRFQM-SYPG 105 (255)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~qaLL~aHD~VA~k~y~~~~~~~~ppp~~p~~~~~~~~~~~~~~~~~~RiV~l~K-~~~~ 105 (255)
+.+.|=++..-+|-.-|.+.|-.+|+....-..+.-.-..+| +.|-.-..+...|.|.+.| +.
T Consensus 483 tRlVLLWVNNHFNDFEgdpaMtrfLEeFE~nLEr~kM~ghLr--------------LLNIACaaKAK~RqviLtk~sr-- 546 (1283)
T KOG3542|consen 483 TRLVLLWVNNHFNDFEGDPAMTRFLEEFEGNLERDKMHGHLR--------------LLNIACAAKAKPRQVILTKASR-- 546 (1283)
T ss_pred heeeeeeeccccccccCCHHHHHHHHHHhhhhhhccccceee--------------ehhhhhhhcccceeEEEecccc--
Confidence 344454555566777888888888876543322222110000 1111001122348899998 44
Q ss_pred ccccccCCCcceEEEEeCC-CC-cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 106 TFLHSRFPVNNGITLKMND-EG-KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 106 ~~~~s~~~epLGiTIk~~e-~g-~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+.||-+.+.++. .| +|||+.+.+|+-|.+.| |+-||+|+||||++..+.+...+.+||
T Consensus 547 -------e~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiL 606 (1283)
T KOG3542|consen 547 -------EDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEIL 606 (1283)
T ss_pred -------cCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHh
Confidence 678888877655 33 79999999999999965 688999999999999999999999999
No 32
>KOG3553|consensus
Probab=97.00 E-value=0.00069 Score=55.78 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=42.9
Q ss_pred CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcC
Q psy337 125 EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172 (255)
Q Consensus 125 ~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLt 172 (255)
+.+|+|.|+-.||+|++ +.|..+|.|+.|||-+.+-.+|++++..++
T Consensus 58 D~GiYvT~V~eGsPA~~-AGLrihDKIlQvNG~DfTMvTHd~Avk~i~ 104 (124)
T KOG3553|consen 58 DKGIYVTRVSEGSPAEI-AGLRIHDKILQVNGWDFTMVTHDQAVKRIT 104 (124)
T ss_pred CccEEEEEeccCChhhh-hcceecceEEEecCceeEEEEhHHHHHHhh
Confidence 45799999999999999 668999999999999999999999998874
No 33
>KOG3552|consensus
Probab=96.92 E-value=0.00091 Score=71.06 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=57.3
Q ss_pred cceeeeeecCCCccccccCCCcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcC
Q psy337 94 SPISRFQMSYPGTFLHSRFPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172 (255)
Q Consensus 94 ~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLt 172 (255)
.|+|+++++. -|||-|..+ .+++|.-+-.||+++ |.|..||+|+.|||.+|...+-+.+++++.
T Consensus 56 pr~vq~~r~~-----------~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvR 119 (1298)
T KOG3552|consen 56 PRQVQLQRNA-----------SLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVR 119 (1298)
T ss_pred chhhhhhccc-----------cccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHH
Confidence 6888888875 688888865 589999999999987 899999999999999999999999999984
No 34
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.48 E-value=0.0054 Score=58.91 Aligned_cols=54 Identities=26% Similarity=0.486 Sum_probs=44.2
Q ss_pred cceEEEEeCC-----------CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 115 NNGITLKMND-----------EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 115 pLGiTIk~~e-----------~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
-||+++..-. ..+++|..|..||+|++.| |+.||+|++|||+.+. +..++..++
T Consensus 235 ~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l 299 (428)
T TIGR02037 235 WLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAI 299 (428)
T ss_pred cCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHH
Confidence 3788876421 2468999999999999976 9999999999999997 457777777
No 35
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=96.45 E-value=0.0011 Score=47.27 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.9
Q ss_pred cCCchhhHHhhhhhhhHHHhhhCc
Q psy337 41 LAGGQLDLAVLQAHDVVAQEIYGE 64 (255)
Q Consensus 41 ~~~~~~~qaLL~aHD~VA~k~y~~ 64 (255)
++..+|+++||++||.||++.|++
T Consensus 29 lL~~p~~~aLl~~hD~va~~~~~~ 52 (56)
T PF02828_consen 29 LLQSPHFQALLEVHDKVAQKVYEP 52 (56)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHcCHHHHHHHHHHHHHHhhcCCC
Confidence 345699999999999999999985
No 36
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.33 E-value=0.0064 Score=47.88 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=35.3
Q ss_pred cceEEEEeCCCCcEEEEEeeccc--------hhhhhc-ccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 115 NNGITLKMNDEGKCIVARIMHGG--------MIHRQA-TLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 115 pLGiTIk~~e~g~IvIaRIl~GG--------~AdRsG-lLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.||+-+..+ ++...|+||+.|- +..+-| .+++||.|..|||+.|... .++..+|
T Consensus 2 ~LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL 64 (88)
T PF14685_consen 2 LLGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLL 64 (88)
T ss_dssp B-SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHH
T ss_pred ccceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHh
Confidence 489998876 5778899999984 444444 4789999999999999854 4566666
No 37
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.23 E-value=0.0099 Score=57.14 Aligned_cols=43 Identities=35% Similarity=0.555 Sum_probs=38.9
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+++|..|..|++|++.| |++||.|++|||+.+. +.+++.++|
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l 404 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVL 404 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHH
Confidence 469999999999999966 9999999999999996 568999988
No 38
>KOG1738|consensus
Probab=95.86 E-value=0.011 Score=60.65 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=59.2
Q ss_pred CCcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcCCCCCcc
Q psy337 113 PVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPIHP 178 (255)
Q Consensus 113 ~epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLtppp~~~ 178 (255)
.+++|+.|+..=+|..+|+.+..+++||+++.++.||+|+.||+.-|.|-.+.-+++-|.+.|.-+
T Consensus 212 ~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi 277 (638)
T KOG1738|consen 212 SEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGI 277 (638)
T ss_pred ccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccc
Confidence 688999999765889999999999999999999999999999999999999999998887655433
No 39
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.57 E-value=0.026 Score=53.34 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=37.6
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+++|.+|..|++|++. .|+.||+|++|||+.+. +.+++.+.|
T Consensus 278 ~Gv~V~~V~~~spA~~a-GL~~GDvI~~Ing~~V~--s~~dl~~~l 320 (351)
T TIGR02038 278 RGIVITGVDPNGPAARA-GILVRDVILKYDGKDVI--GAEELMDRI 320 (351)
T ss_pred ccceEeecCCCChHHHC-CCCCCCEEEEECCEEcC--CHHHHHHHH
Confidence 36899999999999995 48999999999999997 457888777
No 40
>PRK10942 serine endoprotease; Provisional
Probab=95.47 E-value=0.037 Score=54.69 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=37.8
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+++|++|..|++|++. .|+.||+|++|||+.|. +.+++...+
T Consensus 311 ~GvlV~~V~~~SpA~~A-GL~~GDvIl~InG~~V~--s~~dl~~~l 353 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKA-GIKAGDVITSLNGKPIS--SFAALRAQV 353 (473)
T ss_pred CceEEEEECCCChHHHc-CCCCCCEEEEECCEECC--CHHHHHHHH
Confidence 46899999999999985 58999999999999997 458888777
No 41
>PRK10898 serine endoprotease; Provisional
Probab=95.42 E-value=0.081 Score=50.25 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=37.2
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+++|.+|..+++|++ ..|+.||+|++|||+.+.. .+++.+.|
T Consensus 279 ~Gv~V~~V~~~spA~~-aGL~~GDvI~~Ing~~V~s--~~~l~~~l 321 (353)
T PRK10898 279 QGIVVNEVSPDGPAAK-AGIQVNDLIISVNNKPAIS--ALETMDQV 321 (353)
T ss_pred CeEEEEEECCCChHHH-cCCCCCCEEEEECCEEcCC--HHHHHHHH
Confidence 4699999999999999 5689999999999999964 47777777
No 42
>PRK10139 serine endoprotease; Provisional
Probab=95.25 E-value=0.051 Score=53.44 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=37.9
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+++|+.|..+++|++ +.|+.||+|++|||+.+. +.+++...+
T Consensus 290 ~Gv~V~~V~~~SpA~~-AGL~~GDvIl~InG~~V~--s~~dl~~~l 332 (455)
T PRK10139 290 RGAFVSEVLPNSGSAK-AGVKAGDIITSLNGKPLN--SFAELRSRI 332 (455)
T ss_pred CceEEEEECCCChHHH-CCCCCCCEEEEECCEECC--CHHHHHHHH
Confidence 4689999999999998 557999999999999997 458888877
No 43
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.07 E-value=0.1 Score=51.70 Aligned_cols=85 Identities=14% Similarity=0.298 Sum_probs=57.3
Q ss_pred EEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcCCCCCccccCCCCCCCCCCCCCCCcccC-CcceeEEEe
Q psy337 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPIHPYLNGSDDPDDLDTPNGDIDID-NVTRVRLVQ 208 (255)
Q Consensus 130 IaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLtppp~~~~~ng~~~p~~~~~p~~~~~~~-~~~~vrlVq 208 (255)
|+.|.+|++|++ ..|+.||+|++|||+.+. +..++...+..- .-..++. .....+.+.
T Consensus 2 I~~V~pgSpAe~-AGLe~GD~IlsING~~V~--Dw~D~~~~l~~e------------------~l~L~V~~rdGe~~~l~ 60 (433)
T TIGR03279 2 ISAVLPGSIAEE-LGFEPGDALVSINGVAPR--DLIDYQFLCADE------------------ELELEVLDANGESHQIE 60 (433)
T ss_pred cCCcCCCCHHHH-cCCCCCCEEEEECCEECC--CHHHHHHHhcCC------------------cEEEEEEcCCCeEEEEE
Confidence 678899999988 578999999999999996 457777666110 0011221 122456678
Q ss_pred eeecCCchhhcccCeEEEEEcC--CCCCCCCCce
Q psy337 209 FQKNTDEPMREARGSVTFKIVP--SYRSAPPPCE 240 (255)
Q Consensus 209 ~~K~t~ePLG~~~g~vT~k~~p--~~~~~~~~~~ 240 (255)
++|..+|+|| +.|.--. .+++-..-|.
T Consensus 61 Ie~~~dedlG-----~~f~~~~~d~~~~C~N~C~ 89 (433)
T TIGR03279 61 IEKDLDEDLG-----LEFTTALFDGLIQCNNRCP 89 (433)
T ss_pred EecCCCCCCc-----EEeccccCCcccccCCcCc
Confidence 9999999999 7776421 3455555554
No 44
>PRK10942 serine endoprotease; Provisional
Probab=95.06 E-value=0.058 Score=53.31 Aligned_cols=42 Identities=33% Similarity=0.432 Sum_probs=38.3
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+++|..|.++++|++.| |..||.|++|||+.|.. .+++.+++
T Consensus 409 gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l 450 (473)
T PRK10942 409 GVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKIL 450 (473)
T ss_pred CeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHH
Confidence 69999999999999855 88999999999999984 69999998
No 45
>PRK10139 serine endoprotease; Provisional
Probab=94.17 E-value=0.079 Score=52.13 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=38.2
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+++|..|.+|++|++. .|+.||.|++|||+.+. +.+++.+++
T Consensus 390 ~Gv~V~~V~~~spA~~a-GL~~GD~I~~Ing~~v~--~~~~~~~~l 432 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQA-GLQKDDVIIGVNRDRVN--SIAEMRKVL 432 (455)
T ss_pred CceEEEEeCCCChHHHc-CCCCCCEEEEECCEEcC--CHHHHHHHH
Confidence 36899999999999984 58999999999999996 568999988
No 46
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=93.83 E-value=0.097 Score=50.77 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=37.8
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+.+|..+..|++|++ ..|+.||+|.+|||++|. +.+++.+.+
T Consensus 204 g~vV~~V~~~SpA~~-aGL~~GD~Iv~Vng~~V~--s~~dl~~~l 245 (420)
T TIGR00054 204 EPVLSDVTPNSPAEK-AGLKEGDYIQSINGEKLR--SWTDFVSAV 245 (420)
T ss_pred CcEEEEECCCCHHHH-cCCCCCCEEEEECCEECC--CHHHHHHHH
Confidence 588999999999998 569999999999999996 568999888
No 47
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=93.56 E-value=0.2 Score=46.12 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=42.3
Q ss_pred cceEEEEeCC--CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 115 NNGITLKMND--EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 115 pLGiTIk~~e--~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
-+|++..... ..++.|..+-.++++++ ..|+.||+|.+|||+++. +.+++.+++
T Consensus 178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~-aGLr~GDvIv~ING~~i~--~~~~~~~~l 233 (259)
T TIGR01713 178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYK-SGLQDGDIAVALNGLDLR--DPEQAFQAL 233 (259)
T ss_pred eEeEEEEEeCCceeEEEEEecCCCCHHHH-cCCCCCCEEEEECCEEcC--CHHHHHHHH
Confidence 3677753321 23688999999999988 568889999999999997 458888888
No 48
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=93.53 E-value=0.11 Score=50.63 Aligned_cols=42 Identities=19% Similarity=0.420 Sum_probs=37.5
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
..+|..+.+|++|++ ..|+.||+|.+|||+.+. +.+++.+.+
T Consensus 222 ~~vV~~V~~~SpA~~-AGL~~GDvIl~Ing~~V~--s~~dl~~~l 263 (449)
T PRK10779 222 EPVLAEVQPNSAASK-AGLQAGDRIVKVDGQPLT--QWQTFVTLV 263 (449)
T ss_pred CcEEEeeCCCCHHHH-cCCCCCCEEEEECCEEcC--CHHHHHHHH
Confidence 478999999999999 569999999999999996 568888888
No 49
>KOG0609|consensus
Probab=92.85 E-value=0.12 Score=52.45 Aligned_cols=40 Identities=40% Similarity=0.708 Sum_probs=33.7
Q ss_pred CCCCccccCCCCCCCCCCCCCCCcccCCcceeEEEeeeecCCchhhcccCeEEEEEcC
Q psy337 173 PPPIHPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFKIVP 230 (255)
Q Consensus 173 ppp~~~~~ng~~~p~~~~~p~~~~~~~~~~~vrlVq~~K~t~ePLG~~~g~vT~k~~p 230 (255)
.+|.++++++.. .++++.+|+|+|+|+++|||| +|+|+.-
T Consensus 105 ~~~~~p~l~~~~-------------~e~~~~vriv~i~k~~~eplG-----~Tik~~e 144 (542)
T KOG0609|consen 105 QPPFSPYLNPES-------------PEPVEAVRIVRIVKNTGEPLG-----ATIRVEE 144 (542)
T ss_pred CCCCccccCCCc-------------ccccceeEEEEEeecCCCccc-----eEEEecc
Confidence 578888888722 357899999999999999999 9999954
No 50
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=92.37 E-value=0.12 Score=50.31 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=35.4
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.-+|+.+..||+|++ +.|+.||+|.+|||+.|.+. +++...+
T Consensus 127 ~~lV~~V~~~SpA~k-AGLk~GDvI~~vnG~~V~~~--~~l~~~v 168 (449)
T PRK10779 127 RPVVGEIAPNSIAAQ-AQIAPGTELKAVDGIETPDW--DAVRLAL 168 (449)
T ss_pred CccccccCCCCHHHH-cCCCCCCEEEEECCEEcCCH--HHHHHHH
Confidence 357899999999998 78999999999999999754 6776554
No 51
>KOG1320|consensus
Probab=91.87 E-value=0.39 Score=48.24 Aligned_cols=42 Identities=26% Similarity=0.505 Sum_probs=38.3
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.++|+.++.|+++++ +.+..||+|..|||+.|.+. .++.+++
T Consensus 399 ~v~is~Vlp~~~~~~-~~~~~g~~V~~vng~~V~n~--~~l~~~i 440 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGG-YGLKPGDQVVKVNGKPVKNL--KHLYELI 440 (473)
T ss_pred EEEEEEeccCCCccc-ccccCCCEEEEECCEEeech--HHHHHHH
Confidence 378999999999999 89999999999999999877 7888888
No 52
>KOG3532|consensus
Probab=91.26 E-value=0.57 Score=49.45 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=49.3
Q ss_pred CCcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcC
Q psy337 113 PVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172 (255)
Q Consensus 113 ~epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLt 172 (255)
..+.|+.++.+.+..+-|--+....+|++ ..+..||++..|||++|+ +..++...|.
T Consensus 385 s~~ig~vf~~~~~~~v~v~tv~~ns~a~k-~~~~~gdvlvai~~~pi~--s~~q~~~~~~ 441 (1051)
T KOG3532|consen 385 SSPIGLVFDKNTNRAVKVCTVEDNSLADK-AAFKPGDVLVAINNVPIR--SERQATRFLQ 441 (1051)
T ss_pred cCceeEEEecCCceEEEEEEecCCChhhH-hcCCCcceEEEecCccch--hHHHHHHHHH
Confidence 67899999987665677999999999999 567899999999999998 5688888883
No 53
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=90.48 E-value=0.19 Score=34.53 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.2
Q ss_pred cCCchhhHHhhhhhhhHHHhhhCc
Q psy337 41 LAGGQLDLAVLQAHDVVAQEIYGE 64 (255)
Q Consensus 41 ~~~~~~~qaLL~aHD~VA~k~y~~ 64 (255)
++..+++++++++||.|+.+.|.+
T Consensus 28 ll~~~~~~all~~hd~v~~~~~~~ 51 (55)
T smart00569 28 LLQSPHLQALLKIHDKVAETVYDP 51 (55)
T ss_pred HHcCHHHHHHHHHHHHHHHHhccC
Confidence 556699999999999999999974
No 54
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=90.44 E-value=0.29 Score=47.48 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=35.2
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+.+|+.+..+++|++ +.|+.||+|.+|||..+.+. +++.+.+
T Consensus 129 g~~V~~V~~~SpA~~-AGL~~GDvI~~vng~~v~~~--~dl~~~i 170 (420)
T TIGR00054 129 GPVIELLDKNSIALE-AGIEPGDEILSVNGNKIPGF--KDVRQQI 170 (420)
T ss_pred CceeeccCCCCHHHH-cCCCCCCEEEEECCEEcCCH--HHHHHHH
Confidence 567999999999998 78999999999999999744 6665444
No 55
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=89.76 E-value=0.64 Score=39.21 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=40.1
Q ss_pred CcceEEEEeCCC-----CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 114 VNNGITLKMNDE-----GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 114 epLGiTIk~~e~-----g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
..||++++-... ...-|-+|.+||+|++.|+.--.|-|..+++..+.+ .+++.+++
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~--~~~l~~~v 86 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDD--EDDLFELV 86 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--S--TCHHHHHH
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCC--HHHHHHHH
Confidence 679999976441 235589999999999999666789999999988874 47888887
No 56
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=88.89 E-value=0.36 Score=49.21 Aligned_cols=41 Identities=34% Similarity=0.519 Sum_probs=37.2
Q ss_pred cceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCe
Q psy337 115 NNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGI 157 (255)
Q Consensus 115 pLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi 157 (255)
-||+.++. ++|...|.-+-.||+|++ +.|..||.|+.|||+
T Consensus 452 ~LGl~v~~-~~g~~~i~~V~~~gPA~~-AGl~~Gd~ivai~G~ 492 (558)
T COG3975 452 YLGLKVKS-EGGHEKITFVFPGGPAYK-AGLSPGDKIVAINGI 492 (558)
T ss_pred ccceEecc-cCCeeEEEecCCCChhHh-ccCCCccEEEEEcCc
Confidence 48999885 567899999999999999 778999999999999
No 57
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=87.18 E-value=1.2 Score=44.03 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCcceEEEEeCCCCcEEEE--Eee-----ccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 112 FPVNNGITLKMNDEGKCIVA--RIM-----HGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 112 ~~epLGiTIk~~e~g~IvIa--RIl-----~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+.+.|+.+.. +|-++++ .|. .+++|++ +.|++||+|.+|||..+. +.+|+.+++
T Consensus 94 gG~~iGI~l~t--~GVlVvg~~~v~~~~g~~~SPAa~-AGLq~GDiIvsING~~V~--s~~DL~~iL 155 (402)
T TIGR02860 94 GGQSIGVKLNT--KGVLVVGFSDIETEKGKIHSPGEE-AGIQIGDRILKINGEKIK--NMDDLANLI 155 (402)
T ss_pred CCEEEEEEEec--CEEEEEEEEcccccCCCCCCHHHH-cCCCCCCEEEEECCEECC--CHHHHHHHH
Confidence 46777887764 4545544 332 2467766 568999999999999997 458888888
No 58
>KOG0606|consensus
Probab=85.79 E-value=1.9 Score=47.56 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=52.4
Q ss_pred eeeeeecCCCccccccCCCcceEEE---Ee--CCCC----cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHH
Q psy337 96 ISRFQMSYPGTFLHSRFPVNNGITL---KM--NDEG----KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNA 166 (255)
Q Consensus 96 iV~l~K~~~~~~~~s~~~epLGiTI---k~--~e~g----~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~ee 166 (255)
.+.+.+.. ..+|+|+ +. |+.. .-++..|-.|++|.. ..|..||-|.-|||..|.+..|.|
T Consensus 629 pI~i~~~~----------~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~-agls~~DlIthvnge~v~gl~H~e 697 (1205)
T KOG0606|consen 629 PITIHFSG----------KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFE-AGLSAGDLITHVNGEPVHGLVHTE 697 (1205)
T ss_pred ceeeeccc----------cccCceeeeEEEecCCcccceeeeeeeeecCCCCccc-cCCCccceeEeccCcccchhhHHH
Confidence 36777765 7888774 33 3322 246888889999976 678999999999999999999999
Q ss_pred HHhhc
Q psy337 167 LQKIL 171 (255)
Q Consensus 167 l~~iL 171 (255)
+.++|
T Consensus 698 v~~Ll 702 (1205)
T KOG0606|consen 698 VMELL 702 (1205)
T ss_pred HHHHH
Confidence 99999
No 59
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=1.9 Score=40.25 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=35.9
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+++|..+..+|+|++.| +..||.|.++||..+.+. .+++..+
T Consensus 271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v 312 (347)
T COG0265 271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAV 312 (347)
T ss_pred ceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHH
Confidence 48999999999999955 559999999999999754 7777777
No 60
>KOG3129|consensus
Probab=80.00 E-value=2.2 Score=39.27 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=30.2
Q ss_pred EEEEEeeccchhhhhcccCCCCeEEeECCeeccCCC
Q psy337 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163 (255)
Q Consensus 128 IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~ 163 (255)
++|..|..|++|++ |.|.+||+|+++-++.-.+..
T Consensus 141 a~V~sV~~~SPA~~-aGl~~gD~il~fGnV~sgn~~ 175 (231)
T KOG3129|consen 141 AVVDSVVPGSPADE-AGLCVGDEILKFGNVHSGNFL 175 (231)
T ss_pred EEEeecCCCChhhh-hCcccCceEEEecccccccch
Confidence 68999999999999 889999999999877665543
No 61
>PF12812 PDZ_1: PDZ-like domain
Probab=79.45 E-value=2.6 Score=32.28 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=31.6
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcCC
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTP 173 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLtp 173 (255)
..|+++ .||.-.++|.+..|-.|..|||+++.+ .++++++++.
T Consensus 32 gv~v~~--~~g~~~~~~~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ 74 (78)
T PF12812_consen 32 GVYVAV--SGGSLAFAGGISKGFIITSVNGKPTPD--LDDFIKVVKK 74 (78)
T ss_pred EEEEEe--cCCChhhhCCCCCCeEEEeECCcCCcC--HHHHHHHHHh
Confidence 345555 344444456699999999999999974 5999988854
No 62
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=79.24 E-value=7.8 Score=37.68 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=35.2
Q ss_pred cEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 127 ~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
++++--+..++++- |.|+.||.|..|||+++. +.+|+.+.+
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v 171 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYV 171 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHH
Confidence 47888888888764 799999999999999997 458999888
No 63
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=76.16 E-value=7.8 Score=36.56 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=37.8
Q ss_pred ceEEEEeCCCCcEEEEEeeccchh--hhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 116 NGITLKMNDEGKCIVARIMHGGMI--HRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 116 LGiTIk~~e~g~IvIaRIl~GG~A--dRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
++++-.. ++| +.==|+.+|+.. =++-.|+.||.+..|||.+++ ++++..+++
T Consensus 196 i~lsPv~-~~G-l~GYrl~Pgkd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~ 249 (276)
T PRK09681 196 IQLTPVR-KEG-IVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALM 249 (276)
T ss_pred EEEEEEe-eCC-ceEEEECCCCcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHH
Confidence 5666543 245 555677777643 566889999999999999998 457777776
No 64
>KOG1421|consensus
Probab=66.34 E-value=7.2 Score=41.60 Aligned_cols=43 Identities=26% Similarity=0.445 Sum_probs=37.8
Q ss_pred CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 125 EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 125 ~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.|-+++.+++.+|++++ +|..||.++.|||.-+. ...++.++|
T Consensus 302 tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l~--df~~l~~iL 344 (955)
T KOG1421|consen 302 TGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCLN--DFEALEQIL 344 (955)
T ss_pred ceeEEEEEeccCCchhh--ccCCCcEEEEEcceehH--HHHHHHHHH
Confidence 46789999999999998 89999999999988775 458888888
No 65
>KOG4371|consensus
Probab=43.04 E-value=27 Score=38.95 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=57.9
Q ss_pred cceeeeeecCCCccccccCCCcceEEEEeCC-CCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 94 SPISRFQMSYPGTFLHSRFPVNNGITLKMND-EGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 94 ~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e-~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.+.|.+.|++ ...||+...... .|+++|+.|-....|.--|.+.+||.+..-.|+++.+-++-++.+-+
T Consensus 1246 l~~~~~~~~p---------~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~ 1315 (1332)
T KOG4371|consen 1246 LISVMLLKKP---------MATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKL 1315 (1332)
T ss_pred hhhheeeecc---------cccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHh
Confidence 3677788887 678888864333 57899999999999999999999999999999999999887776665
No 66
>KOG3834|consensus
Probab=39.54 E-value=49 Score=33.51 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=55.5
Q ss_pred EEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcCCCCCccccCCCCCCCCCCCCCCCcccCCcce--eE
Q psy337 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPIHPYLNGSDDPDDLDTPNGDIDIDNVTR--VR 205 (255)
Q Consensus 128 IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLtppp~~~~~ng~~~p~~~~~p~~~~~~~~~~~--vr 205 (255)
.-|=|+-..+++++.|+.---|-|..|||+.+.++ .+.+..+|+- -+..-+.++.+.++ +|
T Consensus 17 ~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~----------------~sekVkltv~n~kt~~~R 79 (462)
T KOG3834|consen 17 YHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKA----------------NSEKVKLTVYNSKTQEVR 79 (462)
T ss_pred EEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHh----------------cccceEEEEEecccceeE
Confidence 44556667889999999999999999999999877 4777777720 01111223444433 77
Q ss_pred EEeeeecCCch---hhcccCeEEEEEc
Q psy337 206 LVQFQKNTDEP---MREARGSVTFKIV 229 (255)
Q Consensus 206 lVq~~K~t~eP---LG~~~g~vT~k~~ 229 (255)
++.+..++..= || +.+|+-
T Consensus 80 ~v~I~ps~~wggqllG-----vsvrFc 101 (462)
T KOG3834|consen 80 IVEIVPSNNWGGQLLG-----VSVRFC 101 (462)
T ss_pred EEEecccccccccccc-----eEEEec
Confidence 77777777766 67 666664
No 67
>KOG3834|consensus
Probab=39.26 E-value=66 Score=32.61 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=61.7
Q ss_pred cceeeeeecCCCccccccCCCcceEEEEeCCC-CcE----EEEEeeccchhhhhcccCCCCeEEeE-CCeeccCCCHHHH
Q psy337 94 SPISRFQMSYPGTFLHSRFPVNNGITLKMNDE-GKC----IVARIMHGGMIHRQATLHVGDEIKEI-NGIPVGNQSVNAL 167 (255)
Q Consensus 94 ~RiV~l~K~~~~~~~~s~~~epLGiTIk~~e~-g~I----vIaRIl~GG~AdRsGlLhvGDeIlEV-NGi~V~g~~~eel 167 (255)
+|+|.|..+. -..+..||++|+-... +.+ -|=++...++|++-|+.-.+|-|+-+ |++ ....+++
T Consensus 78 ~R~v~I~ps~------~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~---~~~~eDl 148 (462)
T KOG3834|consen 78 VRIVEIVPSN------NWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV---MHEEEDL 148 (462)
T ss_pred eEEEEecccc------cccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh---ccchHHH
Confidence 5777777655 0123349999987553 333 27788889999998888899999877 544 3346777
Q ss_pred HhhcCCCCCccccCCCCCCCCCCCCCCCcccCCc--ceeEEEeeeecCC
Q psy337 168 QKILTPPPIHPYLNGSDDPDDLDTPNGDIDIDNV--TRVRLVQFQKNTD 214 (255)
Q Consensus 168 ~~iLtppp~~~~~ng~~~p~~~~~p~~~~~~~~~--~~vrlVq~~K~t~ 214 (255)
..++ .++..+... .=++|. +++|.|.++-++.
T Consensus 149 ~~lI-------eshe~kpLk--------lyVYN~D~d~~ReVti~pn~a 182 (462)
T KOG3834|consen 149 FTLI-------ESHEGKPLK--------LYVYNHDTDSCREVTITPNSA 182 (462)
T ss_pred HHHH-------HhccCCCcc--------eeEeecCCCccceEEeecccc
Confidence 7777 222222211 113333 5688888887665
No 68
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=34.26 E-value=69 Score=30.37 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=32.5
Q ss_pred CcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 114 VNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 114 epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
.-+|.-+.-+.+ ++.-+. -+|+.||.-+.+||.+++ ++++...+|
T Consensus 205 ki~Gyr~~pgkd----------~slF~~-sglq~GDIavaiNnldlt--dp~~m~~ll 249 (275)
T COG3031 205 KIEGYRFEPGKD----------GSLFYK-SGLQRGDIAVAINNLDLT--DPEDMFRLL 249 (275)
T ss_pred ceEEEEecCCCC----------cchhhh-hcCCCcceEEEecCcccC--CHHHHHHHH
Confidence 556666655432 233344 468999999999999997 678888887
No 69
>KOG1421|consensus
Probab=28.01 E-value=1e+02 Score=33.42 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred CcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcC
Q psy337 126 GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172 (255)
Q Consensus 126 g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLt 172 (255)
.++|+..+..|++|.+ .|..---|..|||+..- +.++...+|.
T Consensus 862 ~gvyvt~rg~gspalq--~l~aa~fitavng~~t~--~lddf~~~~~ 904 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ--MLRAAHFITAVNGHDTN--TLDDFYHMLL 904 (955)
T ss_pred CceEEeecccCChhHh--hcchheeEEEecccccC--cHHHHHHHHh
Confidence 3589999999999999 88899999999999885 5588888883
No 70
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=23.49 E-value=1.2e+02 Score=28.28 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=30.8
Q ss_pred EEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhc
Q psy337 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171 (255)
Q Consensus 129 vIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iL 171 (255)
+++.+..++++.. ..+..||+|.++||..+... +++..++
T Consensus 132 ~~~~v~~~s~a~~-a~l~~Gd~iv~~~~~~i~~~--~~~~~~~ 171 (375)
T COG0750 132 VVGEVAPKSAAAL-AGLRPGDRIVAVDGEKVASW--DDVRRLL 171 (375)
T ss_pred eeeecCCCCHHHH-cCCCCCCEEEeECCEEccCH--HHHHHHH
Confidence 4556767777776 67899999999999999865 6665555
No 71
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=22.84 E-value=1.3e+02 Score=26.98 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=30.5
Q ss_pred ceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeEC
Q psy337 116 NGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEIN 155 (255)
Q Consensus 116 LGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVN 155 (255)
.|+++.. +++.+.|.-+.-||+|++. .+.-|++|.+|-
T Consensus 113 ~GL~l~~-e~~~~~Vd~v~fgS~A~~~-g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLME-EGGKVIVDEVEFGSPAEKA-GIDFDWEITEVE 150 (183)
T ss_pred CCCEEEe-eCCEEEEEecCCCCHHHHc-CCCCCcEEEEEE
Confidence 5888886 5678999999999999984 567788776653
No 72
>KOG4371|consensus
Probab=22.15 E-value=62 Score=36.32 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=43.2
Q ss_pred CcceEEEEeCCCCcEEEEEeeccchhhhhcccCCCCeEEeECCeeccCCCHHHHHhhcC
Q psy337 114 VNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172 (255)
Q Consensus 114 epLGiTIk~~e~g~IvIaRIl~GG~AdRsGlLhvGDeIlEVNGi~V~g~~~eel~~iLt 172 (255)
.-||..+... .+.+-|.-.--.|.+-+ --|.+||.++-||||-+.++-+.+++.++.
T Consensus 1158 ~~l~~~~a~~-~~~~~~~~~~~~~~~~~-pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~ 1214 (1332)
T KOG4371|consen 1158 GSLGVQIASL-SGRVCIKQLTSEPAISH-PDIRVGDVLLYVNGIAVEGKVHQEVVAMLR 1214 (1332)
T ss_pred CCCCceeccC-ccceehhhcccCCCCCC-CCcchhhhhhhccceeeechhhHHHHHHHh
Confidence 4588887743 34455555555555555 578899999999999999999999999884
Done!