RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy337
(255 letters)
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 78.9 bits (195), Expect = 2e-19
Identities = 57/117 (48%), Positives = 62/117 (52%), Gaps = 46/117 (39%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
GITLKMN+ CIVARIMHGGMIHRQ TLHVGDEI+EINGI V NQ+V LQK+L
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKML----- 70
Query: 177 HPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFKIVPSYR 233
RE RGS+TFKIVPSYR
Sbjct: 71 -----------------------------------------REMRGSITFKIVPSYR 86
Score = 26.5 bits (59), Expect = 3.1
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 203 RVRLVQFQKNTDEPM 217
R RLVQFQKNTDEPM
Sbjct: 1 RSRLVQFQKNTDEPM 15
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 77.0 bits (190), Expect = 1e-18
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 47/122 (38%)
Query: 117 GITLKMNDE-GKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPP 175
G T+K +++ G IVARIM GG R +HVGDE++E+NGIPV ++ + +IL
Sbjct: 18 GATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL---- 73
Query: 176 IHPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFKIVPSYRSA 235
+++G++TFKI+P +
Sbjct: 74 ------------------------------------------AQSQGAITFKIIPGSKEE 91
Query: 236 PP 237
P
Sbjct: 92 TP 93
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 76.6 bits (189), Expect = 3e-18
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 46/117 (39%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
GI LK+N++ C VARI+HGGMIHRQ +LHVGDEI EING V N SV+ LQK +
Sbjct: 27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAM----- 81
Query: 177 HPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFKIVPSYR 233
+E +G ++ K++P+ +
Sbjct: 82 -----------------------------------------KETKGMISLKVIPNQQ 97
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 69.8 bits (171), Expect = 8e-16
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 48/119 (40%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
G+T ++ G+ ++ARI+HGGM+ +Q LHVGD IKE+NG PVG+ ALQ++L
Sbjct: 21 GVTFRVEG-GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQELL----- 73
Query: 177 HPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFKIVPSYRSA 235
R A GSV KI+ S
Sbjct: 74 -----------------------------------------RNASGSVILKILSGPSSG 91
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 69.0 bits (169), Expect = 3e-15
Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 47/120 (39%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
G T++ + I++RI+ GG + LH GDE+ EINGI + + VN + +L
Sbjct: 40 GATVRNEMDS-VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL----- 93
Query: 177 HPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFKIVPSYRSAP 236
+ G++TF ++PS +
Sbjct: 94 -----------------------------------------SDMHGTLTFVLIPSSGPSS 112
Score = 28.6 bits (64), Expect = 0.87
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 181 NGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPM 217
+GS P + I V++V+ +K D P+
Sbjct: 3 SGSSGPITDERVYESIGHYGGETVKIVRIEKARDIPL 39
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 64.8 bits (158), Expect = 1e-13
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 49/126 (38%)
Query: 117 GITL---KMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTP 173
GI+L + ++ + RI ++ R LH GD I I+G + + S+ K+L
Sbjct: 30 GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL-- 87
Query: 174 PPIHPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFKIVPSYR 233
V +I+P +
Sbjct: 88 --------------------------------------------ASISEKVRLEILPVPQ 103
Query: 234 SAPPPC 239
S P
Sbjct: 104 SQRPLR 109
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 62.1 bits (151), Expect = 7e-13
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 117 GITLKMNDEGK----CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G+ L + G ++A ++HGG R L +GD + ING + + A Q +
Sbjct: 24 GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAV 82
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 62.1 bits (151), Expect = 8e-13
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G+T+ N G + RI GG+I T+ VGD I+ ING + + K L
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKL 73
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 59.5 bits (143), Expect = 2e-10
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
G+ L ++ VA ++ ++ L GD+I +N + N L P
Sbjct: 22 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK 80
Query: 177 HPYL 180
+
Sbjct: 81 GEEV 84
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 59.9 bits (144), Expect = 2e-10
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G + ++G+ I ++ I+ GG L GD+I +NG+ + N S L
Sbjct: 321 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 376
Score = 54.9 bits (131), Expect = 7e-09
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 119 TLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPP 175
+ D+ + +I+ GG + L V D I +N + V + +A + L
Sbjct: 82 NPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG 138
Score = 38.7 bits (89), Expect = 0.001
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 95 PISRFQMSYPGTFLHSRFPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEI 154
+ ++ L G D V +I+ GG H+ L +GD+I +
Sbjct: 154 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNS-IYVTKIIEGGAAHKDGRLQIGDKILAV 212
Query: 155 NGIPVGNQSVNALQKIL 171
N + + + L
Sbjct: 213 NSVGLEDVMHEDAVAAL 229
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 56.4 bits (136), Expect = 2e-10
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 122 MNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
+ ++R++ GG+ L V DE+ E+NGI V +S++ + ++
Sbjct: 61 LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMM 110
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 57.6 bits (138), Expect = 8e-10
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
G+ L ++ VA ++ ++ L GD+I +N + N L P
Sbjct: 14 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK 72
Query: 177 HPYL 180
+
Sbjct: 73 GEEV 76
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 47.3 bits (113), Expect = 1e-07
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G++L N+ G C +A ++ G + L GD I + NG + +
Sbjct: 23 GLSLSPNEIG-CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALF 76
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 46.3 bits (109), Expect = 5e-07
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 117 GITLKMND--EGKCIVARIMHGGMIH----RQATLHVGDEIKEINGIPVGNQSVNALQKI 170
G ++ + ++ +H + +H GD I EING PV V ++
Sbjct: 30 GFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDA 89
Query: 171 LTPPP 175
+
Sbjct: 90 IKQTS 94
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 45.5 bits (108), Expect = 1e-06
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 123 NDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ GK +V+ + GG R + GDEI ING V + ++ ALQK
Sbjct: 40 SPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQK 90
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 45.1 bits (107), Expect = 1e-06
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G++L N+ G C +A ++ G + L GD I + NG + +
Sbjct: 17 GLSLSPNEIG-CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALF 70
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 43.6 bits (103), Expect = 3e-06
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 127 KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILT 172
I+ +M GG+ R + VG I EING V + IL+
Sbjct: 32 NGIICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILS 76
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 42.7 bits (101), Expect = 5e-06
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G+ L + V + G+ + LH GD I +ING N S+ +K++
Sbjct: 16 GLRL----GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLI 66
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 42.7 bits (101), Expect = 6e-06
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 117 GITLKMNDEGKC--IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
GIT+ +E I++ + GG+ R +H+GD I IN + ++++ LQ
Sbjct: 19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM 77
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 42.1 bits (99), Expect = 3e-05
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G+ LK D G V + L GD++ +ING S + K+L
Sbjct: 19 GLRLKSIDNG-IFVQLVQANSPASL-VGLRFGDQVLQINGENCAGWSSDKAHKVL 71
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 42.4 bits (100), Expect = 4e-05
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 117 GITLK--MNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
G+T+ ++ +GK V+ + GG+ R L VGD IK +NGI + + ++ L+
Sbjct: 22 GLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN 80
Score = 36.6 bits (85), Expect = 0.004
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
++ + GG R+ T+ GD + ++GI + + ++ L++
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ 182
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 42.2 bits (99), Expect = 4e-05
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQ---- 168
G++L N+ G C +A ++ G + L GD I + NG + +
Sbjct: 128 GLSLSPNEIG-CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANG 186
Query: 169 ----KILTPPP 175
++ P P
Sbjct: 187 KVSMEVTRPKP 197
Score = 39.9 bits (93), Expect = 3e-04
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQ 168
C++ + G + L + D I +ING P+ S+ L+
Sbjct: 47 CVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLK 87
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 41.7 bits (98), Expect = 7e-05
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 123 NDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
D+ + +I+ GG + L V D I +N + V +V AL++
Sbjct: 32 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 82
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 112 FPVNNGITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNA 166
F + G+ + I V +I+ GG H+ L +GD+I +N + + + V A
Sbjct: 115 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAA 174
Query: 167 LQK 169
L+
Sbjct: 175 LKN 177
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 42.7 bits (99), Expect = 7e-05
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 123 NDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
+ I+A +M+GG R L +GD+I ING + + Q I+
Sbjct: 229 SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 277
Score = 32.6 bits (73), Expect = 0.11
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
I+ +M GG+ R + VG I EING V + + + L
Sbjct: 317 GIICSLMRGGIAER-GGVRVGHRIIEINGQSVVATAHEKIVQAL 359
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 39.7 bits (93), Expect = 7e-05
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G+ L V I + R + GD + +ING N S+ + ++
Sbjct: 18 GLRL----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 68
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 40.2 bits (94), Expect = 7e-05
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKI 170
G +K + ++ ++ GG + + GD I +N P+ + S + L+ I
Sbjct: 16 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 74
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 40.1 bits (94), Expect = 7e-05
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 124 DEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK-----ILTP 173
C+ + ++ T+ GDEI +NG + + +Q+ +
Sbjct: 47 QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 106
Query: 174 PPIHPY 179
+ Y
Sbjct: 107 NKLQYY 112
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 41.3 bits (97), Expect = 9e-05
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 112 FPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
+ + +++ I R L +GD + INGIP + + ++L
Sbjct: 22 IQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL 81
Query: 172 TPPPIHPYLNGSDDPDDLDTPNGDIDIDNVTRVR 205
I + + D ++ +V +
Sbjct: 82 RDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPK 115
Score = 37.8 bits (88), Expect = 0.001
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 117 GITLKMNDEGKC----IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQ 168
GIT+ K +++ I G + HR TL +GD++ I+ I + + S V LQ
Sbjct: 122 GITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ 181
Query: 169 K 169
+
Sbjct: 182 Q 182
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 39.2 bits (92), Expect = 1e-04
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKI 170
V++I GG + GDE+ ING P+ AL I
Sbjct: 38 TVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILI 79
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 38.4 bits (90), Expect = 2e-04
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
G+ L V I + R + GD + +ING N + +++
Sbjct: 16 GLRL----ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIER 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 50/243 (20%)
Query: 1 AVLQAHDVVAQEIYGEEAVRVTPPWLTVLALPGWR--HLWPCLAGGQLDLAVLQAHDVVA 58
++ A +A+ E +TVL G R +P + L ++L+ D +
Sbjct: 276 GLVTAV-AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS---LPPSILE--DSLE 329
Query: 59 QEIYGEEAVRVTPPPIHPYLNGFKFTRGTLLKKIFSPISRFQMSYPGTF-LHSRFPVNNG 117
E P P+ L+ +++ +++ P +
Sbjct: 330 N---NEG----VPSPM---LS----ISNLTQEQVQDYVNKTNSHLPAGKQVE-------- 367
Query: 118 ITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKILTP--- 173
I+L N +V+ G Q+ + +++ +QS + ++ L
Sbjct: 368 ISLV-NGAKNLVVS-----G--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 174 --P---PIH-PYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREARGSVTFK 227
P P H L + D + D ++ + +++ + +R GS++ +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 228 IVP 230
IV
Sbjct: 479 IVD 481
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 39.5 bits (92), Expect = 2e-04
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKILT 172
G+ + N ++ +++ G L GD + + V + + LQ I
Sbjct: 41 GLVVIQNGPY-LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITI 99
Query: 173 PPPIH-----PYLNGSDDPDDLDTPNG 194
+ +L + D +G
Sbjct: 100 GTVLQIKAYRGFLEIPQEWQDSGPSSG 126
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 38.6 bits (90), Expect = 2e-04
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 117 GITLKMNDEGKC---IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
GI ++ + + I GG H L VG I E+NG+ + ++ + +
Sbjct: 20 GIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAE 79
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 38.5 bits (90), Expect = 3e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++ I G R LHVGD I +NG+ + + ++V L +
Sbjct: 39 ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 82
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 37.6 bits (88), Expect = 3e-04
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++++I G + L VGD I +NG + + ++V AL+K
Sbjct: 33 LISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 77
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 38.2 bits (89), Expect = 4e-04
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKILTPP 174
+ IM GG + + GD + ++N + N S V L+ I+ P
Sbjct: 37 IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKP 85
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 37.3 bits (87), Expect = 6e-04
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKILTPPPIH 177
+ +I+ GG + L +GD + +N + + ++V +L+ T ++
Sbjct: 37 ITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN--TSDMVY 86
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 37.4 bits (87), Expect = 6e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++ I G R LHVGD I +NG+ + + ++V L +
Sbjct: 57 ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 37.9 bits (88), Expect = 7e-04
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKI 170
G +K + ++ ++ GG + + GD I +N P+ + S + L+ I
Sbjct: 23 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 81
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 37.4 bits (87), Expect = 7e-04
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 124 DEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
C+ + ++ T+ GDEI +NG + + +Q++
Sbjct: 42 QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 93
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 36.8 bits (86), Expect = 7e-04
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++R++ GG+ R L GD++ +NG+ V ++V L+
Sbjct: 34 ISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA 77
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 37.5 bits (87), Expect = 8e-04
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKILTPPPIH 177
+ ++ G + L GDE+ E NG + + N + + P +
Sbjct: 68 FITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVE 120
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 37.0 bits (86), Expect = 8e-04
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKI 170
+ ++ G+ R L GD + +N + N S V L+ +
Sbjct: 48 IRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV 92
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 36.5 bits (85), Expect = 9e-04
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 123 NDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
N+ G+ I + I+ G L GDE+ ++G PV V +Q+
Sbjct: 23 NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQA 75
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain,
scaffold protein, protein assembly, cell polarity,
transport protein; NMR {Mus musculus} SCOP: a.194.1.1
PDB: 1zl8_B
Length = 50
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 1 AVLQAHDVVAQEIYGE 16
A+LQ HDVVA E+Y +
Sbjct: 35 ALLQTHDVVAHEVYSD 50
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 49 AVLQAHDVVAQEIYGE 64
A+LQ HDVVA E+Y +
Sbjct: 35 ALLQTHDVVAHEVYSD 50
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 36.9 bits (85), Expect = 0.001
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 123 NDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
+ + V + G+ ++ L GDEI EIN + + L+ L+ P +
Sbjct: 41 DGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSL 93
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 37.0 bits (86), Expect = 0.001
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVG-----NQSVNALQKI 170
V I G + HR L D+I ING + Q+++ LQK
Sbjct: 53 VQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA 98
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
G T+K + G VA + G + L V DEI IN A+ K
Sbjct: 20 GFTIKWDIPG-IFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYNDSKEWEEAMAK 74
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 36.5 bits (85), Expect = 0.001
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 123 NDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
++ G+ I + ++ G R LH GDE+ ++GIPV ++ +
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA 82
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 123 NDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKI 170
+EG + + ++ GG ++ L GD++ IN + S + + +
Sbjct: 37 RNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA 89
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 35.7 bits (83), Expect = 0.001
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 118 ITLKMNDEG-------KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKI 170
IT+ + G + I+ R L I EING V + + I
Sbjct: 8 ITMHKDSTGHVGFIFKNGKITSIVKDSSAAR-NGLLTEHNICEINGQNVIGLKDSQIADI 66
Query: 171 L 171
L
Sbjct: 67 L 67
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 36.6 bits (85), Expect = 0.001
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
G + +V I+ GG+ R L GD I +I G V Q L+
Sbjct: 29 GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN 85
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7
homolog C; tripartite complex, L27 tetramer, cell
junction; 2.95A {Homo sapiens} PDB: 1rso_A
Length = 254
Score = 38.0 bits (87), Expect = 0.002
Identities = 13/54 (24%), Positives = 17/54 (31%)
Query: 49 AVLQAHDVVAQEIYGEEAVRVTPPPIHPYLNGFKFTRGTLLKKIFSPISRFQMS 102
A+L HD VAQ+ Y E + P P R L +
Sbjct: 170 ALLSVHDTVAQKNYDLEVLFQGPALGEPVRLERDICRAIELLEKLQRSGEVPPQ 223
Score = 32.6 bits (73), Expect = 0.11
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 1 AVLQAHDVVAQEIYGEEAVRVTPPWLTVLALPGWRHLWPCLAGGQLDLAVLQAHDVVA 58
A+L HD VAQ+ Y E + P + L L + + A
Sbjct: 170 ALLSVHDTVAQKNYDLEVLFQGPALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQA 227
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 36.1 bits (84), Expect = 0.002
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKILTPPPIH 177
V I+ G + L GD + E+NG+ + + V+ L+ +
Sbjct: 43 VKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVS 94
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 36.2 bits (84), Expect = 0.002
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
G + ++G+ I V+ I+ GG L GD I +NG+ + N Q+ AL++
Sbjct: 29 GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR 86
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 35.7 bits (83), Expect = 0.002
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
GI L + + + ++ GG+ + L D + ING + + +Q
Sbjct: 19 GIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA 76
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V +I+ GG H+ L +GD++ +N + + ++V AL+
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN 80
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
++ RI G A L GD I I+G + + +A +I
Sbjct: 31 LVITRITPGS-KAAAANLCPGDVILAIDGFGTESMTHADAQDRI 73
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V R+ G R + +GDEI EING N +++ ++
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN 96
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+A + G+ + L VGD I I G Q+VN L+
Sbjct: 57 IAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKN 100
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 109 HSRFPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSV 164
+ P +N I V +I+ GG + L VGD + +N + ++V
Sbjct: 47 NQHIPGDNSI----------YVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAV 96
Query: 165 NALQK 169
L+
Sbjct: 97 AILKN 101
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 36.3 bits (84), Expect = 0.002
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKILTPPPIHP 178
+ I+HGG + L + D++ +NG + +S + L++ ++
Sbjct: 59 IKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIR 111
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++ + G R L GD+I E+NG+ + N +++ AL++
Sbjct: 46 VIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQ 90
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 35.7 bits (83), Expect = 0.002
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
I+ + G + L GD+I E+NGI + +++N L++
Sbjct: 33 IIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ 77
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V R+ G R + VGD+I EING + +++ ++
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 35.3 bits (81), Expect = 0.002
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 124 DEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPI 176
+ V + G+ ++ L GDEI EIN + + L+ L+ P +
Sbjct: 33 GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQPSL 84
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 35.8 bits (83), Expect = 0.003
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
V + G L GD+I +NG + ++V L++
Sbjct: 57 VKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 36.3 bits (84), Expect = 0.003
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVG-----NQSVNALQK 169
V + G + R L D+I IN P+ Q++ LQ+
Sbjct: 58 VKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ 102
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 35.3 bits (82), Expect = 0.003
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V I + + +GD+I ++G + Q+V L+
Sbjct: 37 VKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH 80
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 35.9 bits (83), Expect = 0.003
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V R+ G+ ++ T+ G+E+ ING + ++ L++
Sbjct: 46 VHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ 89
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 35.4 bits (82), Expect = 0.003
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKI 170
++++ G R L VG + E+N + + V L+ +
Sbjct: 48 ISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSV 92
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 35.3 bits (82), Expect = 0.003
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ + GG R+ T+ GD + ++GI + ++++ L++
Sbjct: 36 ITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ 79
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 34.9 bits (81), Expect = 0.003
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
G+++ + V+ I+ GG+ L GD+I +NG V N + L+
Sbjct: 19 GLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC 76
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 35.9 bits (83), Expect = 0.003
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
+ RI G + T+ GDEI ++ G + ++ N ++ +
Sbjct: 60 TINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL 105
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 35.9 bits (83), Expect = 0.003
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V I G + +GDE+ EIN + + ++
Sbjct: 55 VVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT 98
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 35.4 bits (82), Expect = 0.003
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V + GG HR + V D + E++G + + + L+
Sbjct: 39 VKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 82
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 34.9 bits (81), Expect = 0.004
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
++ + GG QA + +GD + I+GI + + A KI
Sbjct: 30 TISSLKDGG-KAAQANVRIGDVVLSIDGINAQGMTHLEAQNKI 71
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 35.4 bits (82), Expect = 0.004
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
V + GG+I R + GD + ++G+ + ++V L++
Sbjct: 57 VISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT 101
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 35.7 bits (82), Expect = 0.004
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 79 NGFKFT-RGTLLKKIFSPISRFQMSYPGTFLHSRFPVNNGITLKMNDEGKCIVARIMHGG 137
GF FT R ++ P S Q SY +R M+ V ++ GG
Sbjct: 19 QGFGFTLRHF---IVYPPESAIQFSYKDEENGNRGGKQRNRLEPMD---TIFVKQVKEGG 72
Query: 138 MIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
A L GD I ++NG V ++ + +Q
Sbjct: 73 PAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQN 107
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 35.5 bits (82), Expect = 0.004
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKILTPPPIH 177
V I+ G + L GD + E+NG+ + + V+ L+ +
Sbjct: 62 VKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVS 113
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 34.5 bits (80), Expect = 0.004
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 123 NDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQKILTPPPIH 177
++ + + + ++ G + GD I +N V + V Q I +
Sbjct: 21 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 80
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 35.1 bits (81), Expect = 0.004
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+A+I+ GG + L G ++ E NGIP+ +++ + + +
Sbjct: 53 IAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ 96
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 35.0 bits (81), Expect = 0.004
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V+RI G L GD+I +NG + N +V+ +
Sbjct: 41 VSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN 84
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 35.0 bits (81), Expect = 0.004
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V+RI GG HR TL VGD + ING+ V +V+ L
Sbjct: 42 VSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA 85
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
++R+ G A L GD I+ ING + + A +I
Sbjct: 35 TISRVHAGSKAA-LAALCPGDLIQAINGESTELMTHLEAQNRI 76
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 35.0 bits (81), Expect = 0.005
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V ++ G R L VGD + ING Q+V ++
Sbjct: 42 VRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA 85
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 34.6 bits (80), Expect = 0.005
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
++R+ GG QA + VGD + I+G G+ + + A KI
Sbjct: 30 SISRLTPGGKAA-QAGVAVGDWVLSIDGENAGSLTHIEAQNKI 71
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 35.1 bits (81), Expect = 0.005
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ RI+ G R A L VGD I +NG + N V ++
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD 90
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 34.2 bits (79), Expect = 0.005
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
+V ++ G A L GD I ING A KI
Sbjct: 29 MVTKVAERGKAKD-ADLRPGDIIVAINGESAEGMLHAEAQSKI 70
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 34.3 bits (79), Expect = 0.005
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
++R+ G A L +GD I I+G N + + A +I
Sbjct: 29 LAISRVTPGSKAA-LANLCIGDVITAIDGENTSNMTHLEAQNRI 71
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 34.6 bits (80), Expect = 0.005
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V + GG R + V D+I E++GI + + L+
Sbjct: 44 VKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN 87
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 34.6 bits (80), Expect = 0.006
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
IV ++ G A L GD I ING N A KI
Sbjct: 32 IIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKI 74
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 34.7 bits (80), Expect = 0.006
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
G + ++G+ I ++ I+ GG L GD+I +NG+ + N Q+ AL+
Sbjct: 28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 85
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 34.6 bits (80), Expect = 0.006
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
++ + GG QA + +GD + I+GI + + A KI
Sbjct: 32 TISSLKDGG-KASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI 73
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 34.8 bits (80), Expect = 0.007
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
+++ I R L +GD + INGIP + + ++L
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL 90
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 34.7 bits (80), Expect = 0.007
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V+RI G L GD+I +NG + N +V+ +
Sbjct: 51 VSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN 94
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 34.3 bits (79), Expect = 0.007
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ ++ + TL GD I E++G+ + + Q+V A++K
Sbjct: 43 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK 86
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 34.2 bits (79), Expect = 0.007
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++ I+ GG L GD+I +NG+ + N Q+ AL+
Sbjct: 39 ISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 82
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 33.8 bits (78), Expect = 0.008
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS-VNALQKI 170
++RI G + + L GD + I+G+ + + A KI
Sbjct: 28 TISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKI 69
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 34.4 bits (79), Expect = 0.010
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ ++ + TL GD I E++G+ + + Q+V A++K
Sbjct: 63 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK 106
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 34.0 bits (78), Expect = 0.013
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ +++ + L GD+I E++G+ + N ++V A++
Sbjct: 54 IKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN 97
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 34.1 bits (78), Expect = 0.013
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 128 CIVARIMHGGMIHR-QATLHVGDEIKEINGIPVGNQS----VNALQK 169
IV+R+ G L+ GD++ ING + + V ++
Sbjct: 43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA 89
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 33.5 bits (77), Expect = 0.014
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V++I+ G ++ L + D I E+NG + Q+V A +
Sbjct: 45 VSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT 88
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 33.5 bits (77), Expect = 0.014
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
V ++ GG L GD++ ++G + S + +
Sbjct: 42 VKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR 85
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 33.5 bits (77), Expect = 0.015
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ +I+ GG L V D + +N + V ++V AL++
Sbjct: 38 ITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE 81
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 33.7 bits (77), Expect = 0.016
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163
++ I + + + GD I +INGI V N+
Sbjct: 52 ISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE 85
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 32.9 bits (76), Expect = 0.017
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V ++ G +H GD + +NG+ + Q+V L+
Sbjct: 37 VKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN 80
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 33.1 bits (76), Expect = 0.018
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKILTPPPIH 177
V ++ G + D+I ++ + V V L+ P+
Sbjct: 48 VKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN--AGNPVR 97
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 33.5 bits (77), Expect = 0.019
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKILTPPPIH 177
V ++ G + + GD I IN + V V Q + ++
Sbjct: 48 VKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVN 99
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 33.1 bits (76), Expect = 0.023
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ ++ G L +GD I E+NG + ++V+ ++
Sbjct: 40 IQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH 83
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 34.3 bits (78), Expect = 0.024
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163
++++I G + L VGD I +NG + + +
Sbjct: 106 LISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 140
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 32.7 bits (75), Expect = 0.028
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+ I+ H L VGD I +NG V N + ++ +++
Sbjct: 41 IKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE 84
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 33.4 bits (76), Expect = 0.031
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V + GG HR + V D + E++G + + + L+
Sbjct: 115 VKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 32.8 bits (75), Expect = 0.035
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
V ++ G + + V D+I ++G+ + + V L+
Sbjct: 50 VKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN 93
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 32.3 bits (74), Expect = 0.036
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V ++ G +H GD + +NG+ + Q+V L+
Sbjct: 46 VKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN 89
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 32.1 bits (73), Expect = 0.041
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 129 IVARIMHGGMIHR-QATLHVGDEIKEINGIPVGN----QSVNALQK 169
IV+R+ G L+ GD++ ING + Q V ++
Sbjct: 46 IVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA 91
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 32.5 bits (74), Expect = 0.041
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ + G + L VGD+I E+NG N ++V L+
Sbjct: 50 ITGVDPGSEAEG-SGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 32.1 bits (73), Expect = 0.052
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 117 GITLKMNDEG---KCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
G + + G K I+ G L GD IKEI V N Q V L++
Sbjct: 26 GFAIADSPTGQKVKMILDSQWCQG-------LQKGDIIKEIYHQNVQNLTHLQVVEVLKQ 78
Query: 170 ILTPPPIHPYLNGSDDPDDLDTPNGDIDIDNVTRV 204
+ + P T +T+V
Sbjct: 79 FPVGADVPLLILRGGPPSPTKTAKMGSGSGQITKV 113
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 31.9 bits (73), Expect = 0.052
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++R+ G R A + VGD++ E+NG+ + ++V AL+
Sbjct: 49 FISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHEAVEALRG 92
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 32.0 bits (73), Expect = 0.053
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
++ I G + A L GD + ING+ V + V ++K
Sbjct: 29 LIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVRK 72
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 31.5 bits (72), Expect = 0.055
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
G T+ + G V +I+ R L GD I E+N V + V+ L +
Sbjct: 17 GFTIADSPGGGGQRVKQIVDSP---RSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVE 71
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 31.5 bits (72), Expect = 0.056
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+ + G + A + GD + + G V V+ +Q
Sbjct: 32 QFLWEVDPGLPAKK-AGMQAGDRLVAVAGESVEGLGHEETVSRIQG 76
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 32.1 bits (73), Expect = 0.056
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
+ ++ G + GD I +N V Q V Q I
Sbjct: 47 IKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI 91
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 32.1 bits (73), Expect = 0.057
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
GI++ ++G V+++ G + H+ L GD++ E NGI + + Q+ + +
Sbjct: 33 GISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQ 88
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 31.5 bits (72), Expect = 0.058
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
G L + + G + A L GD + E+NG V ++ V+ ++
Sbjct: 17 GFHLHGEKGKLGQYIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 31.5 bits (72), Expect = 0.059
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163
+V + GG + A + GD I ++NG V N S
Sbjct: 31 VLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNSS 65
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 31.7 bits (72), Expect = 0.059
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ + GG+ R A L +GD + E+NG V Q VN +++
Sbjct: 47 QYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 91
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 31.6 bits (72), Expect = 0.065
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 111 RFPVNNGITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163
+ + +++ V + GG H L GD+I ++N P + S
Sbjct: 16 KDTLLQDYGFHISESLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLS 66
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 31.7 bits (72), Expect = 0.070
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
++ I G + A L GD + ING+ V + V ++K
Sbjct: 41 LIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVRK 84
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 31.2 bits (71), Expect = 0.075
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V+ + G + + L VGD+I +N + ++V AL+
Sbjct: 39 VSLVEPGSLAEK-EGLRVGDQILRVNDKSLARVTHAEAVKALKG 81
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 31.2 bits (71), Expect = 0.076
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
G T+ + G+ R+ I L GD I EIN V N + V+ L+
Sbjct: 24 GFTIADSPTGQ----RVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDC 77
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 31.1 bits (71), Expect = 0.080
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
++R+ G R A + VGD++ E+NG+ + ++V AL+
Sbjct: 37 FISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHEAVEALRG 80
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 30.8 bits (70), Expect = 0.096
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163
+V + G A L GD I ING V
Sbjct: 36 HVVWSVEDGSPAQE-AGLRAGDLITHINGESVLGLV 70
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 31.3 bits (71), Expect = 0.098
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK-------ILTPPPIHP 178
++ + G + L +GD+I E+NG+ N ++VN L+ I+
Sbjct: 45 ISHVKPGSLSAE-VGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGREL 103
Query: 179 YLNGSDDP 186
++ P
Sbjct: 104 FMTDRSGP 111
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 30.8 bits (70), Expect = 0.10
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V+++ G R A L VGD+I E+NG+ + + +V L
Sbjct: 39 FVSKVEEGSSAER-AGLCVGDKITEVNGLSLESTTMGSAVKVLTS 82
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 30.8 bits (70), Expect = 0.10
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 117 GITLKMNDEGK-CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
G L+ E K I+ I G A L D + +NG V V ++K
Sbjct: 20 GFYLRAGPEQKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 76
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 31.5 bits (71), Expect = 0.11
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+ + GG+ R A L +GD + E+NG V Q VN +++
Sbjct: 68 YLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 111
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 30.8 bits (70), Expect = 0.12
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V+ ++ GG R A + GD I E+NG+ V Q V+ ++
Sbjct: 47 VSAVLPGGAADR-AGVRKGDRILEVNGVNVEGATHKQVVDLIRA 89
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 30.3 bits (69), Expect = 0.13
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+ + GG A L D I E+NG+ V ++ V+ +Q
Sbjct: 29 SFIKEVQKGGPADL-AGLEDEDVIIEVNGVNVLDEPYEKVVDRIQS 73
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 30.4 bits (69), Expect = 0.13
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
VAR+ A L GD I +NG+ V + V+ ++
Sbjct: 39 TFVARVHESSPAQL-AGLTPGDTIASVNGLNVEGIRHREIVDIIKA 83
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 30.3 bits (69), Expect = 0.15
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163
C+++ +M G L GD+I +N I V S
Sbjct: 25 CVLSCVMRGSPADF-VGLRAGDQILAVNEINVKKAS 59
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 31.5 bits (71), Expect = 0.16
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQ 168
++ ++ GG L VGDEI ING + + + +N ++
Sbjct: 113 FISHLIKGGQADS-VGLQVGDEIVRINGYSISSCTHEEVINLIR 155
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 30.5 bits (69), Expect = 0.17
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
V + A GD I I + + + L+
Sbjct: 46 VQVHFLDPYCSASV-AGAREGDYIVSIQLVDCKWLTLSEVMKLLKS 90
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 30.8 bits (69), Expect = 0.19
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V R+ GG A L +GD+I ++NG + Q+ L K
Sbjct: 68 VTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTK 110
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 30.6 bits (69), Expect = 0.19
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 123 NDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQKI 170
ND G VA ++ + L GD+I +N + N ++V L +
Sbjct: 49 NDVG-IFVAGVLEDSPAAK-EGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 98
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 30.1 bits (68), Expect = 0.20
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS 163
V + GG R A L D + ++N PV +
Sbjct: 38 VRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWK 72
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 30.1 bits (68), Expect = 0.20
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 123 NDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+ E ++ +I H A L GD + ING+ + V+ ++
Sbjct: 45 SSEMFTLICKIQEDSPAHC-AGLQAGDVLANINGVSTEGFTYKQVVDLIRS 94
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 29.6 bits (67), Expect = 0.22
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPV 159
V + GG R A L D + ++N PV
Sbjct: 26 VRVQAVDSGGPAER-AGLQQLDTVLQLNERPV 56
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 30.0 bits (68), Expect = 0.23
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+++ ++ GG + L D + +NG+ + N +V L+K
Sbjct: 42 VISDVLKGGP--AEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRK 84
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 29.7 bits (67), Expect = 0.23
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V R+ G + L GD+I + NG N Q+V+ L+
Sbjct: 38 FVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHGQAVSLLKT 80
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 29.9 bits (68), Expect = 0.24
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 124 DEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
++ I+ I G A L D + +NG V V ++K
Sbjct: 27 EQKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIRK 75
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 29.6 bits (67), Expect = 0.32
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+ + + L D I E+NG+ + + V+A++
Sbjct: 36 FIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 29.6 bits (67), Expect = 0.32
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+++++ HR L GD++ +N + + ++V L+
Sbjct: 45 ISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT 87
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 29.3 bits (66), Expect = 0.37
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
V R+ G + L GD+I + NG N Q+V+ L+
Sbjct: 47 VTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHGQAVSLLKT 88
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 28.9 bits (65), Expect = 0.52
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 117 GITLK-MNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
G +LK + + + I G+ R A + D + E+NG V + + V ++K
Sbjct: 22 GFSLKTVQGKKGVYMTDITPQGVAMR-AGVLADDHLIEVNGENVEDASHEEVVEKVKK 78
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 29.0 bits (65), Expect = 0.52
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 117 GITLKMNDEGKCIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKIL 171
G TL+ V + A GD I I G+ +V+ + K+L
Sbjct: 29 GFTLR--GNTPVQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKWLTVSEVMKLL 80
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 28.4 bits (64), Expect = 0.59
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 128 CIVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+ + G R + L D + E+NG V V +++
Sbjct: 30 QYIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 74
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 28.9 bits (65), Expect = 0.62
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGN----QSVNALQK 169
+++ ++ GG L D + +NG P+ + +V L+K
Sbjct: 49 VISDVLPGGP--ADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRK 91
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 29.9 bits (68), Expect = 0.71
Identities = 16/106 (15%), Positives = 25/106 (23%), Gaps = 28/106 (26%)
Query: 143 ATLHVGDEIKEINGIPVGNQSVN-ALQKILTPP--------------------------- 174
A GD I ++G V S+ +
Sbjct: 115 AGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKV 174
Query: 175 PIHPYLNGSDDPDDLDTPNGDIDIDNVTRVRLVQFQKNTDEPMREA 220
I+P + + VRL F NT ++A
Sbjct: 175 TINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQA 220
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 28.5 bits (64), Expect = 0.72
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
G ++ K + V I G L D + ++N + + V + +
Sbjct: 22 GFSVADGLLEKGVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE 78
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics,
PSI-2, structure initiative; 2.71A {Pseudomonas
aeruginosa PA01}
Length = 306
Score = 29.5 bits (67), Expect = 0.88
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 41 LAGGQLDLAVL----QAHDVVAQEIYGEEAVRVTPPPIHP 76
L G+ DLA L + + + + P H
Sbjct: 140 LTSGRFDLAFLYEHDLDSTIETEPLMPPQRPHALLPEGHR 179
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 28.2 bits (62), Expect = 2.3
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 129 IVARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
+ + + L D I E+NG+ + + V+A++
Sbjct: 36 FIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 27.1 bits (60), Expect = 2.9
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 117 GITLKMNDEGKCI-VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQS----VNALQK 169
G L + + + + L D I E+NG+ + + V+A++
Sbjct: 23 GFNLHSDKSKPGQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 26.5 bits (58), Expect = 3.7
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 142 QATLHVGDEIKEINGIPVGNQS 163
+A + G E+K ++GI +
Sbjct: 17 EAQIAPGTELKAVDGIETPDWD 38
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 27.8 bits (62), Expect = 3.9
Identities = 14/103 (13%), Positives = 21/103 (20%), Gaps = 24/103 (23%)
Query: 148 GDEIKEINGIPVGNQSVNALQKILTPPPIHPYLNGSDDPDDLDTPNGDIDIDNVTRVRLV 207
G I +NG + + + L G + + V
Sbjct: 111 GHWIMMMNGDYITKKVESELL------------------------QGSTRQLQIGVYKEV 146
Query: 208 QFQKNTDEPMREARGSVTFKIVPSYRSAPPPCEVQIYPNLPKY 250
+ G T S P I N K
Sbjct: 147 VGEDGEVTGGVVPIGETTMPASRSLVDKPVHRFEIIPWNGKKV 189
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 27.1 bits (60), Expect = 5.8
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 177 HPYLNGSDDPDDLDTPNGDIDIDNVTRVRL-------------VQFQKNTDEPMREARGS 223
HPY+N DP +++ P I + + ++ T + + + S
Sbjct: 356 HPYINVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNSEEKTKNGVVKGQPS 415
Query: 224 VTFKIVPSYRSAPPPCEVQIYPNLPK 249
+ V S S PP V ++
Sbjct: 416 PSGAAVNSSESLPPSSSVNDISSMST 441
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 25.6 bits (56), Expect = 5.8
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 124 DEGKCIVARIMHG--GMIHRQATLHVGDEIKEINGIPVGNQS 163
+ K + R+ G ++ L GD +NG+ + + +
Sbjct: 14 RDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN 55
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 25.7 bits (57), Expect = 6.2
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 145 LHVGDEIKEINGIPVGNQSVNALQKIL 171
LH GD I EI+G +S +
Sbjct: 24 LHAGDLITEIDGNAF--KSSQEFIDYI 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 27.3 bits (61), Expect = 6.6
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 170 ILTPPPIHPYLNGSDDPDDLDTPNGDIDIDNVT 202
I P I + S D G+++ N+
Sbjct: 365 IDNKPSIDSF---SKSGHKPDNIQGNLEFKNIH 394
Score = 27.3 bits (61), Expect = 6.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 160 GNQSVNALQKIL-TPPPIHPYLNGSDDPDDLDTPNGDIDIDNVT 202
S + + +I+ P I Y S + G++ V
Sbjct: 997 ATVSASHIIRIIEKTPEIDSY---STQGLKPNMLEGNVQFSGVV 1037
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 25.7 bits (57), Expect = 6.8
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 143 ATLHVGDEIKEINGIPVGNQSVNALQKIL 171
+ VGD+I +G QS L +
Sbjct: 16 GKIEVGDKIISADGKNY--QSAEKLIDYI 42
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 25.7 bits (56), Expect = 7.3
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 124 DEGKCIVARIMHG--GMIHRQATLHVGDEIKEINGIPVGN--QSVNALQKI 170
+ K + R+ G ++ L GD +NG+ + + Q +
Sbjct: 32 RDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSM 82
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 25.3 bits (56), Expect = 8.1
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 143 ATLHVGDEIKEINGIPVGNQSVNALQKIL 171
L GD I I+G P+ + + +
Sbjct: 20 GRLEAGDRIAAIDGQPI--NTSEQIVSYV 46
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 26.4 bits (57), Expect = 8.8
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 130 VARIMHGGMIHRQATLHVGDEIKEINGIPVGNQSVNALQKILTPPPIHPYL 180
V R+ G + L GD+I + NG N +L L
Sbjct: 28 VTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVEL 76
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B;
L27 domain, cell polarization, cell adhesion; 2.05A {Mus
musculus} PDB: 1y76_A 1y76_B 1y74_A
Length = 265
Score = 26.5 bits (57), Expect = 9.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 49 AVLQAHDVVAQEIYGEEAVRVTPPP 73
A+L AHD VA++ G + P
Sbjct: 177 ALLLAHDKVAEQEMGGGLEVLFQGP 201
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.431
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,233,763
Number of extensions: 261684
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 209
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)