Query psy3370
Match_columns 116
No_of_seqs 135 out of 394
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:20:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1581|consensus 99.9 1.1E-22 2.3E-27 167.6 5.5 62 54-115 234-295 (327)
2 KOG1580|consensus 99.8 3.7E-21 8.1E-26 156.3 4.3 62 55-116 235-296 (337)
3 PF08449 UAA: UAA transporter 99.6 3E-16 6.5E-21 124.7 6.9 63 54-116 218-280 (303)
4 KOG1582|consensus 99.5 1.7E-14 3.7E-19 119.2 6.2 64 53-116 251-315 (367)
5 KOG1583|consensus 99.2 9.3E-12 2E-16 102.7 2.0 60 57-116 238-297 (330)
6 TIGR00803 nst UDP-galactose tr 98.9 1.1E-09 2.3E-14 83.3 2.8 57 56-115 150-206 (222)
7 PF03151 TPT: Triose-phosphate 98.3 1.7E-06 3.7E-11 61.2 5.9 60 56-115 76-135 (153)
8 PTZ00343 triose or hexose phos 96.8 0.0037 8E-08 51.4 6.4 56 60-115 275-330 (350)
9 PRK11689 aromatic amino acid e 96.7 0.0057 1.2E-07 48.5 6.7 58 58-115 212-269 (295)
10 TIGR00817 tpt Tpt phosphate/ph 96.7 0.0028 6E-08 50.0 4.5 46 70-115 230-275 (302)
11 TIGR00950 2A78 Carboxylate/Ami 96.4 0.013 2.9E-07 44.4 6.8 57 59-115 189-246 (260)
12 PF00892 EamA: EamA-like trans 96.3 0.0066 1.4E-07 40.2 3.8 58 58-115 50-108 (126)
13 PRK15430 putative chlorampheni 96.1 0.02 4.3E-07 45.4 6.5 54 62-115 214-267 (296)
14 KOG1441|consensus 95.6 0.0042 9.1E-08 51.7 0.6 55 61-115 235-289 (316)
15 COG0697 RhaT Permeases of the 95.5 0.058 1.3E-06 40.5 6.5 56 60-115 213-269 (292)
16 PF09026 CENP-B_dimeris: Centr 95.2 0.012 2.6E-07 42.1 1.9 44 68-111 55-99 (101)
17 PRK11453 O-acetylserine/cystei 94.9 0.11 2.4E-06 41.2 6.7 57 59-115 212-269 (299)
18 PRK11272 putative DMT superfam 94.8 0.13 2.7E-06 40.7 6.9 57 59-115 210-267 (292)
19 PF13536 EmrE: Multidrug resis 94.8 0.16 3.5E-06 34.9 6.5 52 63-115 36-88 (113)
20 PRK10532 threonine and homoser 94.6 0.14 3E-06 40.6 6.7 56 60-115 207-263 (293)
21 PLN00411 nodulin MtN21 family 94.0 0.19 4.1E-06 42.0 6.5 49 67-115 262-310 (358)
22 KOG2229|consensus 93.8 0.048 1E-06 48.9 2.7 56 2-59 163-222 (616)
23 TIGR03340 phn_DUF6 phosphonate 93.6 0.11 2.3E-06 40.8 4.2 55 61-115 211-265 (281)
24 TIGR00688 rarD rarD protein. T 93.6 0.29 6.4E-06 37.6 6.4 56 60-115 69-124 (256)
25 TIGR03340 phn_DUF6 phosphonate 93.5 0.21 4.6E-06 39.1 5.7 56 60-115 62-117 (281)
26 TIGR00950 2A78 Carboxylate/Ami 93.0 0.38 8.2E-06 36.4 6.2 53 63-115 49-101 (260)
27 KOG2422|consensus 92.6 0.021 4.5E-07 51.7 -1.4 10 75-84 149-158 (665)
28 PRK15430 putative chlorampheni 92.2 0.68 1.5E-05 36.7 7.0 53 63-115 75-127 (296)
29 PF04142 Nuc_sug_transp: Nucle 91.8 0.69 1.5E-05 36.7 6.5 52 64-115 184-235 (244)
30 TIGR00688 rarD rarD protein. T 91.6 0.85 1.8E-05 35.0 6.7 49 60-108 207-255 (256)
31 TIGR00817 tpt Tpt phosphate/ph 91.1 0.82 1.8E-05 36.0 6.2 56 60-115 64-119 (302)
32 PF04142 Nuc_sug_transp: Nucle 90.7 1.5 3.2E-05 34.8 7.4 64 52-115 8-71 (244)
33 PRK15051 4-amino-4-deoxy-L-ara 90.5 1.5 3.2E-05 30.8 6.5 47 69-115 45-91 (111)
34 COG2510 Predicted membrane pro 90.1 0.34 7.3E-06 36.6 3.1 59 57-115 63-121 (140)
35 PLN00411 nodulin MtN21 family 89.9 1.1 2.4E-05 37.4 6.3 55 61-115 78-138 (358)
36 PTZ00343 triose or hexose phos 89.4 1.1 2.3E-05 36.9 5.8 56 60-115 113-168 (350)
37 KOG1444|consensus 86.8 1.4 3E-05 37.1 5.0 58 58-115 225-282 (314)
38 PRK11453 O-acetylserine/cystei 85.2 3.7 8E-05 32.5 6.5 53 63-115 60-114 (299)
39 COG0697 RhaT Permeases of the 84.9 4.2 9E-05 30.4 6.4 56 60-115 69-125 (292)
40 TIGR00776 RhaT RhaT L-rhamnose 84.6 4 8.8E-05 32.6 6.5 58 58-115 208-266 (290)
41 PF01056 Myc_N: Myc amino-term 84.3 0.31 6.7E-06 41.1 0.0 25 6-30 227-251 (329)
42 PF06027 DUF914: Eukaryotic pr 84.3 2.9 6.3E-05 35.0 5.8 58 58-115 230-287 (334)
43 PF14812 PBP1_TM: Transmembran 83.8 0.33 7.2E-06 33.5 0.0 9 30-38 51-59 (81)
44 KOG2765|consensus 83.4 1.4 3E-05 38.4 3.5 63 53-115 151-213 (416)
45 PF10278 Med19: Mediator of RN 83.2 0.33 7.1E-06 37.9 -0.2 15 45-59 161-175 (178)
46 PRK11272 putative DMT superfam 81.4 5.2 0.00011 31.5 6.0 54 61-115 68-123 (292)
47 KOG2927|consensus 81.3 2.5 5.5E-05 36.3 4.4 33 78-110 219-251 (372)
48 TIGR00776 RhaT RhaT L-rhamnose 81.1 5.3 0.00012 31.9 6.0 58 58-115 56-114 (290)
49 PF06375 BLVR: Bovine leukaemi 77.9 0.7 1.5E-05 35.2 0.0 11 48-58 97-107 (154)
50 KOG4510|consensus 77.0 3.2 6.9E-05 35.2 3.6 52 64-115 256-307 (346)
51 PF04235 DUF418: Protein of un 76.6 7.1 0.00015 28.3 5.0 51 60-110 86-145 (163)
52 PF08449 UAA: UAA transporter 75.4 11 0.00024 30.0 6.2 55 61-115 64-118 (303)
53 PF00893 Multi_Drug_Res: Small 73.6 13 0.00027 25.1 5.3 40 76-116 44-85 (93)
54 PF06522 B12D: NADH-ubiquinone 70.7 5.3 0.00011 26.4 2.8 27 56-82 2-28 (73)
55 PLN03100 Permease subunit of E 70.3 6.8 0.00015 32.5 4.0 35 67-101 114-148 (292)
56 PF02724 CDC45: CDC45-like pro 69.9 1.8 3.9E-05 39.0 0.6 15 86-100 236-250 (622)
57 PF10323 7TM_GPCR_Srv: Serpent 68.3 19 0.00041 28.7 6.1 63 52-114 201-265 (283)
58 KOG0526|consensus 68.2 0.9 2E-05 41.1 -1.7 9 50-58 525-533 (615)
59 KOG2234|consensus 66.8 13 0.00028 31.8 5.0 48 68-115 257-304 (345)
60 PRK11689 aromatic amino acid e 65.3 22 0.00047 28.1 5.8 31 85-115 89-119 (295)
61 KOG4510|consensus 64.7 2.7 5.9E-05 35.6 0.6 52 64-115 100-151 (346)
62 KOG0569|consensus 64.0 8.5 0.00018 33.9 3.5 9 99-107 319-327 (485)
63 TIGR00927 2A1904 K+-dependent 63.2 2.4 5.3E-05 40.8 0.0 18 88-105 973-990 (1096)
64 TIGR00056 conserved hypothetic 62.3 12 0.00026 30.4 3.9 35 66-100 80-114 (259)
65 PF04615 Utp14: Utp14 protein; 62.2 3.3 7.1E-05 37.6 0.7 29 4-32 1-29 (735)
66 PF02405 Permease: Permease; 61.3 14 0.0003 28.9 4.0 38 64-101 37-74 (215)
67 PF06027 DUF914: Eukaryotic pr 60.2 18 0.0004 30.3 4.7 55 61-115 79-133 (334)
68 PF11023 DUF2614: Protein of u 59.9 19 0.0004 26.4 4.2 25 84-109 33-57 (114)
69 PF10864 DUF2663: Protein of u 59.7 39 0.00084 25.2 5.9 37 72-108 32-70 (130)
70 PRK10532 threonine and homoser 57.7 47 0.001 26.2 6.5 45 61-105 71-115 (293)
71 PRK02971 4-amino-4-deoxy-L-ara 56.3 72 0.0016 23.0 6.8 50 66-115 53-104 (129)
72 KOG2256|consensus 56.2 13 0.00028 34.3 3.4 40 60-113 141-180 (661)
73 PF13150 DUF3989: Protein of u 55.8 64 0.0014 22.1 6.6 37 50-86 15-54 (85)
74 PF10278 Med19: Mediator of RN 55.1 6.2 0.00013 30.8 1.1 14 44-57 156-169 (178)
75 PRK10452 multidrug efflux syst 55.1 53 0.0012 23.7 5.9 44 72-115 41-85 (120)
76 KOG2153|consensus 54.4 8.1 0.00017 35.8 1.8 28 6-33 155-182 (704)
77 PF05653 Mg_trans_NIPA: Magnes 53.2 30 0.00064 28.3 4.8 56 55-110 207-263 (300)
78 PRK09541 emrE multidrug efflux 51.0 85 0.0018 22.1 6.7 22 94-115 64-85 (110)
79 COG2311 Predicted membrane pro 50.8 44 0.00095 29.0 5.6 51 60-110 307-366 (394)
80 PF06800 Sugar_transport: Suga 48.0 44 0.00096 27.5 5.0 54 59-112 43-97 (269)
81 PF08496 Peptidase_S49_N: Pept 47.2 13 0.00027 28.2 1.6 26 83-108 104-129 (155)
82 TIGR00927 2A1904 K+-dependent 46.3 3.6 7.7E-05 39.7 -1.8 14 60-73 938-951 (1096)
83 PF11810 DUF3332: Domain of un 45.9 27 0.00058 27.0 3.3 27 60-86 8-34 (176)
84 TIGR02838 spore_V_AC stage V s 45.7 41 0.00089 25.4 4.2 36 53-89 10-48 (141)
85 KOG2922|consensus 45.4 75 0.0016 27.2 6.1 56 55-110 221-277 (335)
86 PF11081 DUF2890: Protein of u 45.3 7 0.00015 30.8 -0.0 15 97-112 151-165 (187)
87 PF13808 DDE_Tnp_1_assoc: DDE_ 43.7 15 0.00033 24.7 1.5 35 53-89 15-49 (90)
88 PF00924 MS_channel: Mechanose 43.6 19 0.00041 26.5 2.1 53 62-115 9-63 (206)
89 PF08372 PRT_C: Plant phosphor 43.2 67 0.0014 24.4 5.0 15 98-112 117-131 (156)
90 PRK02935 hypothetical protein; 43.0 94 0.002 22.7 5.5 34 69-109 25-58 (110)
91 PLN00158 histone H2B; Provisio 42.6 18 0.00038 26.6 1.7 18 54-71 38-55 (116)
92 KOG2475|consensus 40.8 87 0.0019 28.7 6.1 17 66-82 233-249 (587)
93 KOG1725|consensus 40.7 27 0.00058 27.5 2.6 29 68-96 40-68 (186)
94 PRK11431 multidrug efflux syst 40.4 1.3E+02 0.0028 21.1 6.5 25 91-115 60-84 (105)
95 PRK13499 rhamnose-proton sympo 39.7 1E+02 0.0023 26.1 6.1 55 56-110 68-123 (345)
96 COG2928 Uncharacterized conser 39.7 94 0.002 25.2 5.6 46 60-105 61-113 (222)
97 PF10810 DUF2545: Protein of u 39.4 37 0.0008 23.3 2.8 19 59-77 5-23 (80)
98 PF02084 Bindin: Bindin; Inte 38.9 16 0.00034 29.9 1.1 6 23-28 177-182 (238)
99 PF03839 Sec62: Translocation 38.8 26 0.00057 28.1 2.3 16 95-110 158-173 (224)
100 KOG3130|consensus 37.2 10 0.00022 33.7 -0.3 6 21-26 296-301 (514)
101 KOG1307|consensus 36.7 13 0.00029 33.6 0.4 18 60-77 429-446 (588)
102 PF11712 Vma12: Endoplasmic re 36.5 1.2E+02 0.0026 21.9 5.4 48 55-108 76-123 (142)
103 PF15122 TMEM206: TMEM206 prot 36.4 57 0.0012 27.3 4.0 34 52-85 6-39 (298)
104 PF13071 DUF3935: Protein of u 36.1 1.1E+02 0.0024 20.4 4.6 51 59-109 9-66 (68)
105 PF02592 DUF165: Uncharacteriz 36.0 1.3E+02 0.0027 21.8 5.4 45 59-109 100-144 (145)
106 PF11368 DUF3169: Protein of u 35.6 2E+02 0.0044 22.4 6.9 21 59-79 7-27 (248)
107 PF06161 DUF975: Protein of un 35.6 1.5E+02 0.0032 22.7 6.0 30 64-93 21-50 (243)
108 KOG2229|consensus 35.3 29 0.00063 31.7 2.3 19 4-22 168-186 (616)
109 KOG2348|consensus 34.5 15 0.00032 33.5 0.3 17 7-23 532-548 (667)
110 PF01222 ERG4_ERG24: Ergostero 33.6 42 0.00091 29.1 2.9 48 60-112 114-161 (432)
111 KOG2023|consensus 33.3 13 0.00028 35.1 -0.3 9 21-29 367-375 (885)
112 PF03608 EII-GUT: PTS system e 33.2 1.7E+02 0.0037 22.8 5.9 51 60-115 32-82 (168)
113 COG4769 Predicted membrane pro 32.8 1E+02 0.0022 24.3 4.6 51 61-111 76-133 (181)
114 PRK13857 type IV secretion sys 32.3 1.5E+02 0.0032 22.0 5.2 54 59-112 56-110 (120)
115 COG0767 Ttg2B ABC-type transpo 32.0 81 0.0017 26.1 4.2 37 63-99 83-119 (267)
116 KOG2234|consensus 31.8 1.2E+02 0.0027 26.0 5.4 48 68-115 99-146 (345)
117 PF12446 DUF3682: Protein of u 31.6 36 0.00078 25.5 1.9 9 18-26 108-116 (133)
118 PF01554 MatE: MatE; InterPro 31.5 59 0.0013 22.2 2.9 43 65-107 3-45 (162)
119 PF08595 RXT2_N: RXT2-like, N- 31.4 22 0.00048 26.8 0.8 11 94-104 137-147 (149)
120 PRK11380 hypothetical protein; 31.3 1.7E+02 0.0037 25.3 6.1 49 61-109 38-91 (353)
121 KOG4264|consensus 30.8 15 0.00032 33.7 -0.3 18 2-19 86-103 (694)
122 PF04889 Cwf_Cwc_15: Cwf15/Cwc 30.2 43 0.00092 27.0 2.3 8 25-32 151-158 (244)
123 KOG0526|consensus 29.5 13 0.00028 33.9 -0.9 13 47-59 525-537 (615)
124 KOG1441|consensus 29.2 1.2E+02 0.0026 25.4 4.8 57 59-115 81-137 (316)
125 PF00420 Oxidored_q2: NADH-ubi 29.1 87 0.0019 20.6 3.3 29 69-97 66-94 (95)
126 PF11674 DUF3270: Protein of u 28.9 2.1E+02 0.0044 20.0 6.0 22 60-82 41-62 (90)
127 PRK09823 putative inner membra 28.3 1.1E+02 0.0023 23.6 4.0 58 58-115 63-122 (160)
128 PF04615 Utp14: Utp14 protein; 28.3 16 0.00035 33.2 -0.5 37 4-40 4-40 (735)
129 PF06024 DUF912: Nucleopolyhed 28.0 43 0.00093 23.3 1.7 27 59-85 58-84 (101)
130 PRK02971 4-amino-4-deoxy-L-ara 28.0 1.9E+02 0.0041 20.8 5.1 30 61-90 4-33 (129)
131 PF14023 DUF4239: Protein of u 27.1 2.2E+02 0.0048 21.3 5.6 8 108-115 189-196 (209)
132 PHA03171 UL37 tegument protein 27.0 21 0.00045 31.7 -0.0 10 49-58 149-158 (499)
133 PF06732 Pescadillo_N: Pescadi 26.8 1.4E+02 0.0031 24.9 4.8 57 55-113 117-173 (281)
134 COG5070 VRG4 Nucleotide-sugar 26.4 48 0.001 27.7 2.0 57 59-115 222-278 (309)
135 PF01944 DUF95: Integral membr 25.9 2.5E+02 0.0054 20.0 6.4 30 57-86 105-134 (173)
136 COG5238 RNA1 Ran GTPase-activa 25.9 26 0.00056 30.2 0.4 15 6-20 343-357 (388)
137 PF12666 PrgI: PrgI family pro 25.8 2E+02 0.0044 18.9 6.2 34 61-94 19-52 (93)
138 KOG1581|consensus 25.6 1.6E+02 0.0034 25.3 4.9 61 55-115 77-137 (327)
139 PF02364 Glucan_synthase: 1,3- 25.4 1.5E+02 0.0032 28.4 5.1 40 73-115 644-684 (817)
140 PF11286 DUF3087: Protein of u 24.8 1.7E+02 0.0038 22.6 4.7 12 72-87 32-43 (165)
141 PF11028 DUF2723: Protein of u 24.7 2.2E+02 0.0047 21.8 5.2 27 62-88 42-68 (178)
142 PF04147 Nop14: Nop14-like fam 24.7 31 0.00068 32.2 0.7 12 98-109 468-479 (840)
143 PF04657 DUF606: Protein of un 24.7 1.9E+02 0.0042 20.8 4.8 48 63-110 66-115 (138)
144 PTZ00449 104 kDa microneme/rho 24.5 8.6 0.00019 35.6 -2.9 30 7-36 877-906 (943)
145 PF12753 Nro1: Nuclear pore co 24.3 27 0.00058 30.6 0.1 13 65-77 279-291 (404)
146 PF05097 DUF688: Protein of un 24.3 25 0.00054 31.0 -0.0 15 4-18 224-238 (446)
147 TIGR00821 EII-GUT PTS system, 24.2 2.5E+02 0.0055 22.1 5.5 51 60-115 35-85 (181)
148 PF01102 Glycophorin_A: Glycop 23.6 1.6E+02 0.0034 21.6 4.0 23 61-83 66-89 (122)
149 PF01941 AdoMet_Synthase: S-ad 23.6 84 0.0018 27.5 3.0 33 53-89 25-57 (396)
150 PF07069 PRRSV_2b: Porcine rep 23.6 1.6E+02 0.0035 19.7 3.7 11 68-78 6-16 (73)
151 PF14018 DUF4234: Domain of un 23.5 1.9E+02 0.0041 18.4 4.1 26 63-88 7-32 (75)
152 KOG4553|consensus 23.5 13 0.00029 36.5 -1.9 32 5-36 1321-1353(1398)
153 PF03823 Neurokinin_B: Neuroki 23.3 97 0.0021 20.2 2.6 19 60-78 6-24 (59)
154 PRK04439 S-adenosylmethionine 23.3 85 0.0018 27.5 3.0 33 53-89 25-57 (399)
155 PF05297 Herpes_LMP1: Herpesvi 23.2 27 0.00059 29.9 0.0 32 63-94 110-141 (381)
156 PF01529 zf-DHHC: DHHC palmito 23.1 1.8E+02 0.004 20.6 4.4 18 57-74 91-108 (174)
157 PRK10835 hypothetical protein; 23.0 1.7E+02 0.0038 24.4 4.7 16 63-78 297-312 (373)
158 PF12576 DUF3754: Protein of u 22.8 3.1E+02 0.0067 19.9 5.7 22 62-83 62-83 (141)
159 PF12664 DUF3789: Protein of u 22.4 79 0.0017 18.4 1.9 19 60-78 2-20 (34)
160 COG2962 RarD Predicted permeas 22.1 4.1E+02 0.0089 22.4 6.7 17 99-115 249-265 (293)
161 PF03419 Peptidase_U4: Sporula 22.0 3.1E+02 0.0067 22.0 5.8 26 55-80 27-52 (293)
162 PRK12585 putative monovalent c 21.6 1.3E+02 0.0027 24.1 3.4 27 55-81 28-54 (197)
163 PF00689 Cation_ATPase_C: Cati 21.5 1E+02 0.0023 22.0 2.8 33 56-88 46-79 (182)
164 COG2076 EmrE Membrane transpor 21.4 60 0.0013 23.3 1.5 22 94-115 64-85 (106)
165 COG3730 SrlA Phosphotransferas 21.2 3E+02 0.0066 21.5 5.3 50 61-115 36-85 (176)
166 KOG4813|consensus 21.1 16 0.00035 30.0 -1.7 13 80-92 157-169 (248)
167 PF15179 Myc_target_1: Myc tar 21.0 1E+02 0.0022 24.6 2.7 13 62-74 20-32 (197)
168 PF07149 Pes-10: Pes-10; Inte 21.0 1.1E+02 0.0024 26.5 3.2 41 53-93 200-243 (370)
169 PRK10650 multidrug efflux syst 21.0 3.1E+02 0.0067 19.3 6.8 24 92-115 67-90 (109)
170 KOG4433|consensus 20.5 1.1E+02 0.0024 27.7 3.1 29 64-92 239-267 (526)
171 PF13829 DUF4191: Domain of un 20.5 3.6E+02 0.0079 21.8 5.9 52 54-110 21-72 (224)
172 PF07290 DUF1449: Protein of u 20.4 3.9E+02 0.0084 21.0 5.9 26 56-81 62-90 (202)
173 COG5414 TATA-binding protein-a 20.4 40 0.00086 29.0 0.4 9 52-60 357-365 (392)
174 PF05255 UPF0220: Uncharacteri 20.2 1.5E+02 0.0032 22.6 3.5 44 65-109 110-155 (166)
175 PF13301 DUF4079: Protein of u 20.0 3.1E+02 0.0068 21.0 5.3 58 51-110 77-140 (175)
No 1
>KOG1581|consensus
Probab=99.87 E-value=1.1e-22 Score=167.64 Aligned_cols=62 Identities=31% Similarity=0.503 Sum_probs=60.3
Q ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 54 KKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 54 K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..+||++++|++++|+||++||+|||+||..||||++++||||||++||+||+++||||+++
T Consensus 234 ~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~ 295 (327)
T KOG1581|consen 234 IKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSS 295 (327)
T ss_pred HHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccch
Confidence 46899999999999999999999999999999999999999999999999999999999986
No 2
>KOG1580|consensus
Probab=99.82 E-value=3.7e-21 Score=156.34 Aligned_cols=62 Identities=29% Similarity=0.488 Sum_probs=60.3
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~ 116 (116)
+|||++++++.++++||++||+|||.|+..||||+|++|||+|||||||+|+++|+||++.+
T Consensus 235 ~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r 296 (337)
T KOG1580|consen 235 QRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR 296 (337)
T ss_pred HhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999863
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.64 E-value=3e-16 Score=124.73 Aligned_cols=63 Identities=37% Similarity=0.605 Sum_probs=60.4
Q ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370 54 KKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116 (116)
Q Consensus 54 K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~ 116 (116)
..+||+.+.+++++|+++++||.|+|+++++||||++++|+|+||++|+++|+++|+|+++++
T Consensus 218 ~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~ 280 (303)
T PF08449_consen 218 ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL 280 (303)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH
Confidence 348999999999999999999999999999999999999999999999999999999999863
No 4
>KOG1582|consensus
Probab=99.52 E-value=1.7e-14 Score=119.19 Aligned_cols=64 Identities=59% Similarity=0.918 Sum_probs=61.4
Q ss_pred hHhhCch-HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370 53 KKKNNPV-VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116 (116)
Q Consensus 53 ~K~~hP~-~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~ 116 (116)
-|.+||. .+.+.+++|+++++||.|+..+|+.|||+++++|||.||++||+||+++|.+|||.|
T Consensus 251 fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q 315 (367)
T KOG1582|consen 251 FCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ 315 (367)
T ss_pred HHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH
Confidence 4789997 999999999999999999999999999999999999999999999999999999854
No 5
>KOG1583|consensus
Probab=99.17 E-value=9.3e-12 Score=102.74 Aligned_cols=60 Identities=27% Similarity=0.516 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370 57 NPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTFQ 116 (116)
Q Consensus 57 hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~~ 116 (116)
-|.+++|+++.+++||+|...+|.+.++..||++++|.|+|||+|+++|+++|.||||++
T Consensus 238 vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~ 297 (330)
T KOG1583|consen 238 VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW 297 (330)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH
Confidence 599999999999999999999999999999999999999999999999999999999974
No 6
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.87 E-value=1.1e-09 Score=83.33 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=50.1
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 56 NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.||...+ +..+++++||.+|+.+++.+|+++.++++++|+++|+++|+++|||++++
T Consensus 150 ~~~~~~~---~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~ 206 (222)
T TIGR00803 150 GYPTAVW---IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISS 206 (222)
T ss_pred CCchHHH---HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 4555443 44477899999999999999999999999999999999999999999985
No 7
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.31 E-value=1.7e-06 Score=61.17 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=56.8
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 56 NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+.|..+..+++.++++.+-+++.|.++...+|++.+++..+|.++.+++|+++|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~ 135 (153)
T PF03151_consen 76 SDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITP 135 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCH
Confidence 456889999999999999999999999999999999999999999999999999999885
No 8
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.81 E-value=0.0037 Score=51.35 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++..+++.+++.++-..+.|+.+.+-++++.++..+++.++++++|+++||+++|+
T Consensus 275 ~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~ 330 (350)
T PTZ00343 275 IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTL 330 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCch
Confidence 33344444445555555677899999999999999999999999999999999986
No 9
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.72 E-value=0.0057 Score=48.50 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++.+..++..++++.+|+++.++.+++.|+..+++++.+-=.++++++++++|+++++
T Consensus 212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~ 269 (295)
T PRK11689 212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSF 269 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 4567777788888999999999999999999999999999999999999999999875
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.66 E-value=0.0028 Score=50.03 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 70 SGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 70 ~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+..+++.+.|+.+++.||++++++.+++.++++++|+++||+++|+
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~ 275 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISP 275 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCch
Confidence 3344455667899999999999999999999999999999999986
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.44 E-value=0.013 Score=44.39 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 59 VVYIYALLFSIS-GYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 59 ~~~~~i~~~sl~-~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..+..++..+++ +.+|+.+.++.+++.|+..++++..+.-.+++++|+++|++++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~ 246 (260)
T TIGR00950 189 LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL 246 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344455656655 578999999999999999999999999999999999999999875
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=96.27 E-value=0.0066 Score=40.22 Aligned_cols=58 Identities=12% Similarity=0.268 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 58 PVVYIYALLFSIS-GYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 58 P~~~~~i~~~sl~-~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+..+..++..++. +++++.+.++.+++-++..++++..+-=++++++++++++.++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~ 108 (126)
T PF00892_consen 50 PRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSW 108 (126)
T ss_pred hhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 3344455555555 699999999999999999999999999999999999999998875
No 13
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.11 E-value=0.02 Score=45.42 Aligned_cols=54 Identities=6% Similarity=-0.010 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 62 IYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 62 ~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..+++.++++++++++.++.+++.|+-.+++++.+-=.++++++.++||+++++
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~ 267 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGA 267 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 345555668889999999999999999999999999999999999999999886
No 14
>KOG1441|consensus
Probab=95.57 E-value=0.0042 Score=51.70 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
...++++++|..+-++.+|..|.+.+||+..+.-.....+-|+.|+++|++|+|+
T Consensus 235 ~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~ 289 (316)
T KOG1441|consen 235 FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF 289 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence 4455677799999999999999999999999999999999999999999999976
No 15
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.50 E-value=0.058 Score=40.48 Aligned_cols=56 Identities=11% Similarity=0.233 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGY-LGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~a-iGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+..++..++++. +|+.+.++.++.-|+...+++..+.-+++++++++++++++++
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~ 269 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP 269 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 4556666666666 6999999999999999999999999999999999999998874
No 16
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=95.21 E-value=0.012 Score=42.11 Aligned_cols=44 Identities=14% Similarity=-0.035 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHH-HHHhhCchhhhHhHhhhhHHHHHHHHhhccC
Q psy3370 68 SISGYLGVQVVLT-LVKTCGAFVAVTVTTCRKAVTIVLSFVFFAK 111 (116)
Q Consensus 68 sl~~aiGQ~fIf~-ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh 111 (116)
++.-|+|.++|+. -+.+++-+.-.+|-++||.=.=..|+.-|+|
T Consensus 55 ~v~rYltSf~id~~v~shi~h~e~~~vhv~rk~ha~~a~~~g~~~ 99 (101)
T PF09026_consen 55 MVKRYLTSFPIDDKVQSHILHLEHDLVHVTRKNHARQASVRGIGH 99 (101)
T ss_dssp HHHHHHCTS---HHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hHhhhhhccchhHhhhhhhhccccceEEeeeeccchhhccccccc
Confidence 3444566555554 5667888889999999987666666665555
No 17
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=94.88 E-value=0.11 Score=41.18 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=45.8
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 59 VVYIYALLFSI-SGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 59 ~~~~~i~~~sl-~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..+..++.+++ ++.++..+.+..+++.|+...++++.+-=++++++|++++|.++++
T Consensus 212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~ 269 (299)
T PRK11453 212 TTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG 269 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 34555555554 4456666667789999999999999999999999999999999875
No 18
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=94.81 E-value=0.13 Score=40.69 Aligned_cols=57 Identities=7% Similarity=0.122 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 59 VVYIYALLFSIS-GYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 59 ~~~~~i~~~sl~-~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..+..++..++. +.+|..+.++.+++.|+-.++++..+.=++++++|+++++.++++
T Consensus 210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~ 267 (292)
T PRK11272 210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSP 267 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 345566666664 578888999999999999999999999999999999999999875
No 19
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=94.75 E-value=0.16 Score=34.90 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=39.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 63 YALLFSISGY-LGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 63 ~i~~~sl~~a-iGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+++.++++. ++..+.++.++.-+ ..++.+..+==+++.++|.++|++++++
T Consensus 36 ~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~ 88 (113)
T PF13536_consen 36 WLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSP 88 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4667777776 55555555555555 5777888888999999999999999875
No 20
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=94.63 E-value=0.14 Score=40.56 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISG-YLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~-aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+..++..++.+ .++..+.++.+++-|+..+++++.+==.+++++++++||.++++
T Consensus 207 ~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~ 263 (293)
T PRK10532 207 ILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTL 263 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcH
Confidence 333344555554 45555779999999999999999999999999999999998875
No 21
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=94.01 E-value=0.19 Score=41.98 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 67 FSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 67 ~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+++.+++..+-++.+++.||..+++...+==++++++|++++|.++++
T Consensus 262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~ 310 (358)
T PLN00411 262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL 310 (358)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcH
Confidence 3444567778888899999999999999999999999999999999986
No 22
>KOG2229|consensus
Probab=93.76 E-value=0.048 Score=48.90 Aligned_cols=56 Identities=43% Similarity=0.593 Sum_probs=24.3
Q ss_pred CCCCchhhHhhhhhhhhhhhhhhhhhhhhhhHHhHHhHHHHHH----HHHHHhhHhHhhCch
Q psy3370 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKK----KKKKKKKKKKKNNPV 59 (116)
Q Consensus 2 ~~~~~~~e~E~eee~ee~~~~e~~~~~~~~~pskKKkkkkk~~----~~~~~~~~~K~~hP~ 59 (116)
|.|.+|||+..|.++|+++. +....-.....+++|++-+|. +.=|||.+++...|.
T Consensus 163 ~~D~~dee~dsd~~~d~dg~--~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t 222 (616)
T KOG2229|consen 163 GADNEDEEDDSDSESDEDGP--DADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPT 222 (616)
T ss_pred cCCccccccccccccccccc--cHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCC
Confidence 55555554444444444333 333333333444433332221 112555555666664
No 23
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=93.64 E-value=0.11 Score=40.80 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+..+.+-.+++.+|+.+.++.+++.|+...+....+-=.+++++++++||+++++
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~ 265 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYL 265 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccH
Confidence 3344555577788999999999999998888888888899999999999999875
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=93.55 E-value=0.29 Score=37.55 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+..+++.+++.++++.+.|+.+++-++...+++..+==++++++|.++|+++++.
T Consensus 69 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~ 124 (256)
T TIGR00688 69 LILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISR 124 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34456777777889999999999998888888999999999999999999999875
No 25
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=93.54 E-value=0.21 Score=39.10 Aligned_cols=56 Identities=0% Similarity=0.025 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+..+++.+++++++..+.++.++.-++-..++++.+.-+++++++.++|+.+++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~ 117 (281)
T TIGR03340 62 FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSP 117 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCH
Confidence 34455666667788888888888877888888888889999999999999999875
No 26
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=92.97 E-value=0.38 Score=36.41 Aligned_cols=53 Identities=13% Similarity=-0.139 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 63 YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+++-+++.+++..+.|+.+++-++-..+++..+-=+++.+++.++++.++++
T Consensus 49 ~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~ 101 (260)
T TIGR00950 49 LLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRK 101 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcH
Confidence 33444455678888999999998888889999999999999999999988774
No 27
>KOG2422|consensus
Probab=92.59 E-value=0.021 Score=51.67 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q psy3370 75 VQVVLTLVKT 84 (116)
Q Consensus 75 Q~fIf~ti~~ 84 (116)
|-+|......
T Consensus 149 q~~v~~i~~~ 158 (665)
T KOG2422|consen 149 QDWVLEIDLK 158 (665)
T ss_pred chhHHHHhhh
Confidence 3334333333
No 28
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=92.22 E-value=0.68 Score=36.67 Aligned_cols=53 Identities=15% Similarity=0.047 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 63 YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+++-+++.+++..+.|+.+++-++...+++..+-=++++++|.++++.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~ 127 (296)
T PRK15430 75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRR 127 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 33445566677788889999999999999999999999999999999999875
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=91.78 E-value=0.69 Score=36.67 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 64 ALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..+..+++++|-+.+-..+++-++++=...+.+=-++|.++|+++|+.++|+
T Consensus 184 ~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 184 VWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 4456668888888999999999999999999999999999999999999985
No 30
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=91.63 E-value=0.85 Score=35.01 Aligned_cols=49 Identities=2% Similarity=-0.019 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhh
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVF 108 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~ 108 (116)
.+..+++.++++.+|+.+.++.+++.++-.+++++.+--.+++++++++
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888899999999999999999999999999999999999765
No 31
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=91.06 E-value=0.82 Score=36.03 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
-+..++..++++++.+.+-+..+..-++-..+++..+==+++++++.++++++++.
T Consensus 64 ~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~ 119 (302)
T TIGR00817 64 LLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPS 119 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcH
Confidence 46678889999999998888888887888888888888999999999999998874
No 32
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=90.72 E-value=1.5 Score=34.81 Aligned_cols=64 Identities=5% Similarity=0.019 Sum_probs=57.0
Q ss_pred HhHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 52 KKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 52 ~~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..-.++|.-...+++=|++-++.....|..+++..|.+.-+...++=.+|-++|+++++++++.
T Consensus 8 ~~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~ 71 (244)
T PF04142_consen 8 DEVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSR 71 (244)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccch
Confidence 4455667667777888899999999999999999999999999999999999999999999985
No 33
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=90.49 E-value=1.5 Score=30.82 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 69 ISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 69 l~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++-.++.++..+.+++-..-++..+.++.=++++++|.++|+.++|+
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~ 91 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSP 91 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 33344555555666666655666667788899999999999999986
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=90.09 E-value=0.34 Score=36.57 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=52.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 57 NPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 57 hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.|..+.++++-++.++++-+|.|+.++.=.+-.++-+-.+--.+.+++|+++++.++|.
T Consensus 63 ~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~ 121 (140)
T COG2510 63 GPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSL 121 (140)
T ss_pred CcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCH
Confidence 56678899999999999999999999988877777788888899999999999999885
No 35
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=89.87 E-value=1.1 Score=37.42 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhh------ccCCCCC
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVF------FAKPFTF 115 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~------Fgh~lt~ 115 (116)
+..+++.++++++.+.+.|.-++.-+|...+++..+==+++++++.++ |+.++++
T Consensus 78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~ 138 (358)
T PLN00411 78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSV 138 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccH
Confidence 556666777776677788888999999999999999999999999998 6877764
No 36
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=89.38 E-value=1.1 Score=36.88 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+..++..++|+.++.+..+..++.-++-...++..+==++++++|.++++.++++
T Consensus 113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~ 168 (350)
T PTZ00343 113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNL 168 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccH
Confidence 56778899999988877766777766777777888888899999999999998875
No 37
>KOG1444|consensus
Probab=86.76 E-value=1.4 Score=37.12 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
|.++..+++-|++|.+=-++.+.+...-+|++.++|-..-++.+.|.-++.++.|+++
T Consensus 225 ~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~ 282 (314)
T KOG1444|consen 225 SSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF 282 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech
Confidence 5678888999999999999999999999999999999999999999999999888876
No 38
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=85.20 E-value=3.7 Score=32.49 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--chhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 63 YALLFSISGYLGVQVVLTLVKTCG--AFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fIf~ti~~FG--sL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.++.++++.++++++.++.--.++ +-..++++.+==+++++++.++++.+++.
T Consensus 60 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~ 114 (299)
T PRK11453 60 LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQG 114 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcH
Confidence 355566766677765544444443 44556677777899999999999988774
No 39
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=84.90 E-value=4.2 Score=30.39 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHH-hhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSF-VFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~-l~Fgh~lt~ 115 (116)
.++.++.-.++.++++.+.|+.+..-++-..+++..+-=+++.+++. ++++.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~ 125 (292)
T COG0697 69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSL 125 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcH
Confidence 44566777777788888888889999999999999999999999996 666888775
No 40
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=84.62 E-value=4 Score=32.58 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-hhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 58 PVVYIYALLFSISGYLGVQVVLTLVK-TCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 58 P~~~~~i~~~sl~~aiGQ~fIf~ti~-~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
|...+..++.++.-++|..+.+...+ .=|+-+.+++.+.==+.++++|+++|+.++++
T Consensus 208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~ 266 (290)
T TIGR00776 208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTK 266 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 44444455577777777777777778 88999999999999999999999999988775
No 41
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=84.33 E-value=0.31 Score=41.08 Aligned_cols=25 Identities=56% Similarity=0.691 Sum_probs=0.0
Q ss_pred chhhHhhhhhhhhhhhhhhhhhhhh
Q psy3370 6 EEEEEEEEEEEEEEEEEEDLHMCLN 30 (116)
Q Consensus 6 ~~~e~E~eee~ee~~~~e~~~~~~~ 30 (116)
+.++++++||+||+++|+++..+-+
T Consensus 227 ~s~~~~~~~eeeeeeEEIDVVTVEk 251 (329)
T PF01056_consen 227 ESDSDEEEEEEEEEEEEIDVVTVEK 251 (329)
T ss_dssp -------------------------
T ss_pred ccccccccccccCCCcceEEEEeee
Confidence 3334455555556667778777754
No 42
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=84.27 E-value=2.9 Score=35.04 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+++...++.+++|..+--.++-..++.-||+.+.+-..+==+.++++++++|+..++|
T Consensus 230 ~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ 287 (334)
T PF06027_consen 230 SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSW 287 (334)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccH
Confidence 3455666667766666555566677888999888888888999999999999988875
No 43
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=83.79 E-value=0.33 Score=33.50 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhhHHhHHh
Q psy3370 30 NYLAMKKKK 38 (116)
Q Consensus 30 ~~~pskKKk 38 (116)
+++|++-++
T Consensus 51 e~m~rK~k~ 59 (81)
T PF14812_consen 51 EPMPRKGKK 59 (81)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 445554443
No 44
>KOG2765|consensus
Probab=83.37 E-value=1.4 Score=38.41 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=53.9
Q ss_pred hHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 53 KKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 53 ~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++-.+-+.....+.||..-.+++++-...++.-..-..+++.++--+|+++++.++-+++||+
T Consensus 151 ~~~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~ 213 (416)
T KOG2765|consen 151 GKLTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTL 213 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhH
Confidence 344555677888999999999999998888888888888999999999999999988888875
No 45
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=83.20 E-value=0.33 Score=37.88 Aligned_cols=15 Identities=53% Similarity=0.669 Sum_probs=6.9
Q ss_pred HHHHHhhHhHhhCch
Q psy3370 45 KKKKKKKKKKKNNPV 59 (116)
Q Consensus 45 ~~~~~~~~~K~~hP~ 59 (116)
.|+++|++....||-
T Consensus 161 eKk~kK~K~~~~~~~ 175 (178)
T PF10278_consen 161 EKKKKKKKHSPEHPG 175 (178)
T ss_pred HHHHHhhcCCCcCCC
Confidence 333344445555554
No 46
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=81.39 E-value=5.2 Score=31.51 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHH-HhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 61 YIYALLFSISG-YLGVQVVLTLV-KTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 61 ~~~i~~~sl~~-aiGQ~fIf~ti-~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+.+++..++++ .+++.+.|... ..-++-..+++..+==+++.++|.+ |+++++.
T Consensus 68 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~ 123 (292)
T PRK11272 68 WLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRK 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCch
Confidence 33444555444 45566777776 5555556777888888999999975 7888875
No 47
>KOG2927|consensus
Probab=81.31 E-value=2.5 Score=36.35 Aligned_cols=33 Identities=6% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHHHHhhCchhhhHhHhhhhHHHHHHHHhhcc
Q psy3370 78 VLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 78 If~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fg 110 (116)
.|+.|..+|=|++-+++++=.++-.+++.+++|
T Consensus 219 yY~sig~~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 219 YYLSIGAGGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred eeeecchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355565666677666766666666666777666
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=81.07 E-value=5.3 Score=31.90 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHh-hhhHHHHHHHHhhccCCCCC
Q psy3370 58 PVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTT-CRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT-~RK~~SIlLS~l~Fgh~lt~ 115 (116)
|..+..-++.++.-++||++.|..++.-|.-+...+.+ +==.++.++|+++|+...+.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~ 114 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTS 114 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccch
Confidence 66666667777778999999999999888777755555 33347888999999877653
No 49
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=77.93 E-value=0.7 Score=35.20 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHhhHhHhhCc
Q psy3370 48 KKKKKKKKNNP 58 (116)
Q Consensus 48 ~~~~~~K~~hP 58 (116)
+++++.....+
T Consensus 97 k~~k~~~~~ss 107 (154)
T PF06375_consen 97 KSKKRHYSESS 107 (154)
T ss_dssp -----------
T ss_pred cCCCCCCCCCC
Confidence 33444443333
No 50
>KOG4510|consensus
Probab=77.02 E-value=3.2 Score=35.18 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 64 ALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++.+++.|.+||+++-..++.=-|=-.++.+++-=.+.++.-+++|+|--|+
T Consensus 256 ~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ 307 (346)
T KOG4510|consen 256 FVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTI 307 (346)
T ss_pred EEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChH
Confidence 3456788999999999988776666678888888899999999999997664
No 51
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=76.60 E-value=7.1 Score=28.30 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hhCchhhhHhHhhhhHHHHHHHHhhcc
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVK---------TCGAFVAVTVTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~---------~FGsL~~t~VtT~RK~~SIlLS~l~Fg 110 (116)
.+..+--.|++.|++|..|...+- +.++.....+...==++.+++|.+|..
T Consensus 86 ~l~~~GrmaLT~Yi~qsii~~~lf~~~~l~l~~~~~~~~~~~~~~~i~~~q~~~s~~W~~ 145 (163)
T PF04235_consen 86 PLAAVGRMALTNYILQSIIGTLLFYGYGLGLFGHLSPAQSLLIALGIWVVQLLFSYLWLR 145 (163)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455578999999998887743 333334444554555677888888765
No 52
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=75.44 E-value=11 Score=29.96 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+...+..+++.++++.+-+..++.-+--+.++.-...=+.++++|+++++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~ 118 (303)
T PF08449_consen 64 LKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSR 118 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccH
Confidence 5566777888888888888888876666666667777788899999999998875
No 53
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=73.58 E-value=13 Score=25.13 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCchhhh--HhHhhhhHHHHHHHHhhccCCCCCC
Q psy3370 76 QVVLTLVKTCGAFVAV--TVTTCRKAVTIVLSFVFFAKPFTFQ 116 (116)
Q Consensus 76 ~fIf~ti~~FGsL~~t--~VtT~RK~~SIlLS~l~Fgh~lt~~ 116 (116)
+|....+++ -++.++ +.+.+--+.+.++|+++|+.++|+.
T Consensus 44 ~~l~~al~~-lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 44 YFLSLALKK-LPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 444444444 554443 3344777899999999999999863
No 54
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=70.70 E-value=5.3 Score=26.40 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=20.4
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy3370 56 NNPVVYIYALLFSISGYLGVQVVLTLV 82 (116)
Q Consensus 56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti 82 (116)
.||+++..+++.+++..+|.+++++.+
T Consensus 2 ~~pel~PL~~~vg~a~~~a~~~~~r~l 28 (73)
T PF06522_consen 2 KHPELYPLFVIVGVAVGGATFYLYRLL 28 (73)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHH
Confidence 589999888877777777777776654
No 55
>PLN03100 Permease subunit of ER-derived-lipid transporter; Provisional
Probab=70.30 E-value=6.8 Score=32.52 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHH
Q psy3370 67 FSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVT 101 (116)
Q Consensus 67 ~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~S 101 (116)
|+..+++|.+..+.++++.||++++++...|---+
T Consensus 114 fGa~~~vG~~v~~~~vRELgPvltAlilAgR~GSa 148 (292)
T PLN03100 114 LGLTRSIGGVLALAFSRELSPVVTAIVLAGRVGSA 148 (292)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888999999999999998886533
No 56
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=69.92 E-value=1.8 Score=38.95 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=9.8
Q ss_pred CchhhhHhHhhhhHH
Q psy3370 86 GAFVAVTVTTCRKAV 100 (116)
Q Consensus 86 GsL~~t~VtT~RK~~ 100 (116)
.-|-+++|..|-+++
T Consensus 236 d~LW~AIvGlT~q~i 250 (622)
T PF02724_consen 236 DLLWLAIVGLTDQYI 250 (622)
T ss_pred HHHHHHHHhhhHHhh
Confidence 346667777776666
No 57
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=68.26 E-value=19 Score=28.68 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=39.1
Q ss_pred HhHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhH--hHhhhhHHHHHHHHhhccCCCC
Q psy3370 52 KKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVT--VTTCRKAVTIVLSFVFFAKPFT 114 (116)
Q Consensus 52 ~~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~--VtT~RK~~SIlLS~l~Fgh~lt 114 (116)
..+.+..|.-..+.++.++.+...+++|+....+.+....+ +..+|.+.-++--++-|-||+.
T Consensus 201 ~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~ 265 (283)
T PF10323_consen 201 SSRSRRREIRLAIQVFILFCAFFVILVYYIFSNYFAQNFNTDPIFYLRAFYPILNGLLSFINPWM 265 (283)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33444455555566666666777788888777665554332 5567877777666665656653
No 58
>KOG0526|consensus
Probab=68.17 E-value=0.9 Score=41.07 Aligned_cols=9 Identities=67% Similarity=0.944 Sum_probs=3.6
Q ss_pred hhHhHhhCc
Q psy3370 50 KKKKKKNNP 58 (116)
Q Consensus 50 ~~~~K~~hP 58 (116)
|+-||...|
T Consensus 525 k~~kk~kdp 533 (615)
T KOG0526|consen 525 KKGKKKKDP 533 (615)
T ss_pred cCcccCCCC
Confidence 333344444
No 59
>KOG2234|consensus
Probab=66.83 E-value=13 Score=31.83 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 68 SISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 68 sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
.+.+++|.+.|-..++.-+.+.=.-.+++-=.+|.++|+++|++++|.
T Consensus 257 Vl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~ 304 (345)
T KOG2234|consen 257 VLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTL 304 (345)
T ss_pred HHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 344555556665566666666666666666778888999999999874
No 60
>PRK11689 aromatic amino acid exporter; Provisional
Probab=65.28 E-value=22 Score=28.11 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=25.3
Q ss_pred hCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 85 CGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 85 FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
-.+..++++..+==++++++|.+++++++++
T Consensus 89 ~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~ 119 (295)
T PRK11689 89 RQAIEVGMVNYLWPSLTILFAVLFNGQKANW 119 (295)
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHhcCCccH
Confidence 3556667788888999999999999988875
No 61
>KOG4510|consensus
Probab=64.71 E-value=2.7 Score=35.59 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 64 ALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+++-+++|..|.+.+||...+-.=-=+++||=.--.|++++|.++.+.|+|.
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~ 151 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK 151 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH
Confidence 4567889999999999998877666667777778899999999999999874
No 62
>KOG0569|consensus
Probab=63.95 E-value=8.5 Score=33.92 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q psy3370 99 AVTIVLSFV 107 (116)
Q Consensus 99 ~~SIlLS~l 107 (116)
+++-++|.+
T Consensus 319 ~~~t~~~~~ 327 (485)
T KOG0569|consen 319 LLSTLVSPF 327 (485)
T ss_pred HHHHHHHHH
Confidence 333333433
No 63
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=63.15 E-value=2.4 Score=40.81 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=8.6
Q ss_pred hhhhHhHhhhhHHHHHHH
Q psy3370 88 FVAVTVTTCRKAVTIVLS 105 (116)
Q Consensus 88 L~~t~VtT~RK~~SIlLS 105 (116)
.++++-+++.=+++-+++
T Consensus 973 TfLA~GTSIPDlisSviv 990 (1096)
T TIGR00927 973 TILAAGTSIPDLITSVIV 990 (1096)
T ss_pred hhhhhhcccHHHHHHHHH
Confidence 444445555555444433
No 64
>TIGR00056 conserved hypothetical integral membrane protein. This model describes a subfamily of the DUF140 family, a set of proteins found so far in Bacteria and chloroplast. Members have multiple predicted transmembrane helical regions. One member of this family has been associated with the toluene tolerance phenotype of Pseudomonas putida. Many bacterial species have one or two members. The Mycobacteria have large paralogous families included in the DUF140 family but excluded from this subfamily on based on extreme divergence at the amino end and on phylogenetic and UPGMA trees on the more conserved regions.
Probab=62.34 E-value=12 Score=30.43 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHH
Q psy3370 66 LFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAV 100 (116)
Q Consensus 66 ~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~ 100 (116)
-|+..+++|.+..+..+++.||+.++++...|---
T Consensus 80 ~~Ga~~~~g~~~~~~~vRElgPlltalilagR~Gs 114 (259)
T TIGR00056 80 AFGAETSIGGLVALSLLRELGPVLTALVVAGRVGS 114 (259)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556678888889999999999999998888543
No 65
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=62.18 E-value=3.3 Score=37.63 Aligned_cols=29 Identities=28% Similarity=0.624 Sum_probs=14.6
Q ss_pred CCchhhHhhhhhhhhhhhhhhhhhhhhhh
Q psy3370 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYL 32 (116)
Q Consensus 4 ~~~~~e~E~eee~ee~~~~e~~~~~~~~~ 32 (116)
++|||++|+|+|++++.+++......+.+
T Consensus 1 ~sdd~~~e~~~d~~~~~~~~~~~~L~~~i 29 (735)
T PF04615_consen 1 DSDDEEDEDESDDDDEDDEEKHDKLLKAI 29 (735)
T ss_pred CCcccccccccccccccChHHHHHHHHHH
Confidence 35565555555444444554444444444
No 66
>PF02405 Permease: Permease; InterPro: IPR003453 This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 150 amino acids long.
Probab=61.34 E-value=14 Score=28.88 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHH
Q psy3370 64 ALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVT 101 (116)
Q Consensus 64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~S 101 (116)
+--+...+++|.......+++.||+.++++...|---.
T Consensus 37 l~~~G~~~~~g~~~~~~~vrEl~P~~tall~agR~Gsa 74 (215)
T PF02405_consen 37 LSQFGAQQFVGSILGIALVRELGPLLTALLLAGRSGSA 74 (215)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 34456667788888899999999999999988886543
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=60.21 E-value=18 Score=30.33 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++.-+++|++-..|.+++....+.-.-..+.+...+=-.++++||+++.+.++++
T Consensus 79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~ 133 (334)
T PF06027_consen 79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSW 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhH
Confidence 3444567899999999888877776666666777777889999999999888764
No 68
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=59.93 E-value=19 Score=26.44 Aligned_cols=25 Identities=12% Similarity=0.192 Sum_probs=19.3
Q ss_pred hhCchhhhHhHhhhhHHHHHHHHhhc
Q psy3370 84 TCGAFVAVTVTTCRKAVTIVLSFVFF 109 (116)
Q Consensus 84 ~FGsL~~t~VtT~RK~~SIlLS~l~F 109 (116)
..+.++.++.+.+= +++++.|.++|
T Consensus 33 ~~~~~im~ifmllG-~L~~l~S~~VY 57 (114)
T PF11023_consen 33 KASPIIMVIFMLLG-LLAILASTAVY 57 (114)
T ss_pred cccHHHHHHHHHHH-HHHHHHHHHHH
Confidence 47777788877776 88888888765
No 69
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=59.65 E-value=39 Score=25.20 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHh--hCchhhhHhHhhhhHHHHHHHHhh
Q psy3370 72 YLGVQVVLTLVKT--CGAFVAVTVTTCRKAVTIVLSFVF 108 (116)
Q Consensus 72 aiGQ~fIf~ti~~--FGsL~~t~VtT~RK~~SIlLS~l~ 108 (116)
+++.++++.+... +.++..++...+=-.+-+++.+..
T Consensus 32 ~~~~~y~~~~~~~~s~~~~~s~~~~~~~~l~~ll~~~~~ 70 (130)
T PF10864_consen 32 FLFFIYFYIKVIGYSFSSFLSAILGSPVHLFWLLALAFS 70 (130)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHcChHHHHHHHHHHHH
Confidence 3333444443333 333333333333333334444333
No 70
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=57.66 E-value=47 Score=26.19 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHH
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLS 105 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS 105 (116)
+..++..+++..+++.+.|+.+++-++-..+++..+==+++.+++
T Consensus 71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 71 RLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 445666777778888888888888777776666655555555554
No 71
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=56.28 E-value=72 Score=22.99 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHh--hccCCCCC
Q psy3370 66 LFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFV--FFAKPFTF 115 (116)
Q Consensus 66 ~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l--~Fgh~lt~ 115 (116)
+--+|..++-++-.+.+++.+.-++.-+.+.==.+..++++. +|+.++|+
T Consensus 53 lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~ 104 (129)
T PRK02971 53 LGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSL 104 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 333444555556666667766655555555443556666664 79999885
No 72
>KOG2256|consensus
Probab=56.23 E-value=13 Score=34.31 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPF 113 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~l 113 (116)
.+...++.+-++.++|. ..++.+|+++..+.+.+.+++.-
T Consensus 141 ~it~~~V~~w~~~l~~~--------------~~~~~~r~vv~af~aAva~~~~~ 180 (661)
T KOG2256|consen 141 VITVSNVYSWKQQLEQE--------------TSLTLVRRVVQAFRAAVAYGGED 180 (661)
T ss_pred hhhHHHHHHHHHHHhcc--------------cChHHHHHHHHHHHHHHHhcccc
Confidence 45566777777777776 45677888888888888777643
No 73
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=55.83 E-value=64 Score=22.11 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=27.9
Q ss_pred hhHhHhhCch---HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3370 50 KKKKKKNNPV---VYIYALLFSISGYLGVQVVLTLVKTCG 86 (116)
Q Consensus 50 ~~~~K~~hP~---~~~~i~~~sl~~aiGQ~fIf~ti~~FG 86 (116)
=+.-|.+-|. ...-+++|++.++++.+.++..|..||
T Consensus 15 Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~~ai~~~G 54 (85)
T PF13150_consen 15 LRRYCGRLSPKQRLRVVLVMLVLFAALCLYMTVSAIYDIG 54 (85)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777774 666777788888888888888888888
No 74
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.08 E-value=6.2 Score=30.85 Aligned_cols=14 Identities=79% Similarity=0.914 Sum_probs=6.1
Q ss_pred HHHHHHhhHhHhhC
Q psy3370 44 KKKKKKKKKKKKNN 57 (116)
Q Consensus 44 ~~~~~~~~~~K~~h 57 (116)
||+||.|+++|.+|
T Consensus 156 KK~KKeKk~kK~K~ 169 (178)
T PF10278_consen 156 KKKKKEKKKKKKKH 169 (178)
T ss_pred hhhHHHHHHHhhcC
Confidence 33334444444444
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=55.05 E-value=53 Score=23.69 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCchh-hhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 72 YLGVQVVLTLVKTCGAFV-AVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 72 aiGQ~fIf~ti~~FGsL~-~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+++-++..+.++...--+ -++-+-+.=+.+.++|+++|+.++|+
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~ 85 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSL 85 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 333344444444433222 22334467788899999999999985
No 76
>KOG2153|consensus
Probab=54.42 E-value=8.1 Score=35.80 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=10.8
Q ss_pred chhhHhhhhhhhhhhhhhhhhhhhhhhH
Q psy3370 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLA 33 (116)
Q Consensus 6 ~~~e~E~eee~ee~~~~e~~~~~~~~~p 33 (116)
||+++|++++|||-+.+.-+-...+..|
T Consensus 155 ed~~~e~~~e~de~~~~~~ea~~~e~l~ 182 (704)
T KOG2153|consen 155 EDLDEEDSDEDDETPNAAEEAEIKEELP 182 (704)
T ss_pred hcccchhccccccccCHHHHhhcchhcc
Confidence 3333333333333333333333444445
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=53.22 E-value=30 Score=28.32 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=38.9
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhH-hHhhhhHHHHHHHHhhcc
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVT-VTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~-VtT~RK~~SIlLS~l~Fg 110 (116)
-.||..+..++++.+|..+...|....+++|++..++- .-.+=-.++++-|.++|.
T Consensus 207 f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~ 263 (300)
T PF05653_consen 207 FTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQ 263 (300)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhc
Confidence 46788777777777776666777788999999865432 222233477888888887
No 78
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=51.02 E-value=85 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.3
Q ss_pred HhhhhHHHHHHHHhhccCCCCC
Q psy3370 94 TTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 94 tT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+-+.=..+.++|+++|+.++|+
T Consensus 64 ~GlG~v~~~l~g~~~f~e~~~~ 85 (110)
T PRK09541 64 SGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHHHHHHhCCCCCH
Confidence 3456778899999999999986
No 79
>COG2311 Predicted membrane protein [Function unknown]
Probab=50.75 E-value=44 Score=29.03 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hhCchhhhHhHhhhhHHHHHHHHhhcc
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVK---------TCGAFVAVTVTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~---------~FGsL~~t~VtT~RK~~SIlLS~l~Fg 110 (116)
.+..+--.|+++|++|..|..+|= ++|++....+...==++.+++|.+|..
T Consensus 307 ~~A~vGRmALTNYLlQSiv~T~iFY~yglGL~g~~~~~~~l~~ai~V~~~ql~~S~lWlr 366 (394)
T COG2311 307 AFAAVGRMALTNYLLQSIVCTTIFYGYGLGLFGSLGRLAGLLLAIAVWLLQLILSTLWLR 366 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666689999999998887763 456777888888888889999999875
No 80
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=47.98 E-value=44 Score=27.46 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhH-HHHHHHHhhccCC
Q psy3370 59 VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKA-VTIVLSFVFFAKP 112 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~-~SIlLS~l~Fgh~ 112 (116)
..+..-++-+++-++||.+-|...+.-|--.+-=+.|-=+. .+.|+.+++||.-
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW 97 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEW 97 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCC
Confidence 34445555666679999999999999996555555555454 4888999999863
No 81
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=47.19 E-value=13 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.8
Q ss_pred HhhCchhhhHhHhhhhHHHHHHHHhh
Q psy3370 83 KTCGAFVAVTVTTCRKAVTIVLSFVF 108 (116)
Q Consensus 83 ~~FGsL~~t~VtT~RK~~SIlLS~l~ 108 (116)
.=-|.+-++-|..+|.=+|-+||+.-
T Consensus 104 dF~Gdi~A~~v~~LReeisail~~a~ 129 (155)
T PF08496_consen 104 DFKGDIKASEVESLREEISAILSVAT 129 (155)
T ss_pred ecCCCccHHHHHHHHHHHHHHHHhCC
Confidence 34588889999999999999999753
No 82
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=46.30 E-value=3.6 Score=39.73 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy3370 60 VYIYALLFSISGYL 73 (116)
Q Consensus 60 ~~~~i~~~sl~~ai 73 (116)
++.-++.+++.+|+
T Consensus 938 Fi~SIiwIsi~Syi 951 (1096)
T TIGR00927 938 FLGSIMWIAMFSYL 951 (1096)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333443333
No 83
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=45.94 E-value=27 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCG 86 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FG 86 (116)
++..+.+.+++|++||+.++..+..|+
T Consensus 8 ~~~~~~~~~lsgC~Gsfalt~kl~~~N 34 (176)
T PF11810_consen 8 VALLAGSLSLSGCMGSFALTNKLYKWN 34 (176)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHh
Confidence 456677788899999999999999998
No 84
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=45.69 E-value=41 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=23.5
Q ss_pred hHhhCchHHHHHHHHHHHH---HHHHHHHHHHHHhhCchh
Q psy3370 53 KKKNNPVVYIYALLFSISG---YLGVQVVLTLVKTCGAFV 89 (116)
Q Consensus 53 ~K~~hP~~~~~i~~~sl~~---aiGQ~fIf~ti~~FGsL~ 89 (116)
..-.+|-+.-++.+|-+.| .+||++.-.+ .++|.++
T Consensus 10 ~~Pk~~~~~n~l~AFlvGG~IC~iGQ~l~d~~-~~~~~lt 48 (141)
T TIGR02838 10 YEPKPPYLKNCVMAFLVGGLICLIGQLISDFY-LRYFQFS 48 (141)
T ss_pred cCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHH-HHhccCC
Confidence 3445667777788887777 4567777766 4445444
No 85
>KOG2922|consensus
Probab=45.40 E-value=75 Score=27.23 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=41.6
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHh-HhhhhHHHHHHHHhhcc
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTV-TTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~V-tT~RK~~SIlLS~l~Fg 110 (116)
..||..+..++.+..|...=..++...+..|++.+++-| -.+=-.++|+-|+++|.
T Consensus 221 l~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fk 277 (335)
T KOG2922|consen 221 LFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFK 277 (335)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 468877777777777777777888888999988765533 33344578888998885
No 86
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=45.29 E-value=7 Score=30.76 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=7.3
Q ss_pred hhHHHHHHHHhhccCC
Q psy3370 97 RKAVTIVLSFVFFAKP 112 (116)
Q Consensus 97 RK~~SIlLS~l~Fgh~ 112 (116)
|-..|+.=| ++|+|.
T Consensus 151 RtlrSlTRr-~Lyh~~ 165 (187)
T PF11081_consen 151 RTLRSLTRR-CLYHRG 165 (187)
T ss_pred HHHHHHHHH-HHHHhh
Confidence 444455556 455543
No 87
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=43.73 E-value=15 Score=24.72 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=23.8
Q ss_pred hHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q psy3370 53 KKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFV 89 (116)
Q Consensus 53 ~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~ 89 (116)
.+.+|| +.+|+++++|+.+|..==+.-|..|+.--
T Consensus 15 ~~~ry~--L~~iL~i~~~a~l~G~~~~~~i~~~~~~~ 49 (90)
T PF13808_consen 15 RGRRYP--LADILLIALCAVLCGADSWREIAEWARAH 49 (90)
T ss_pred CCceec--HHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 355677 55677777777777776677777776543
No 88
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=43.58 E-value=19 Score=26.52 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHh--hccCCCCC
Q psy3370 62 IYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFV--FFAKPFTF 115 (116)
Q Consensus 62 ~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l--~Fgh~lt~ 115 (116)
+.++++.+++.+|+- +-.++.-+|.+.+++.-..+..++=++|-+ +|.+||..
T Consensus 9 ~~~~~~~~l~~~g~~-~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~v 63 (206)
T PF00924_consen 9 IIVGILIILSILGID-VSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKV 63 (206)
T ss_dssp HHHHHHHHHHCCT---SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-T
T ss_pred HHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccC
Confidence 334445555555555 445667777777777777777777666644 56677753
No 89
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=43.20 E-value=67 Score=24.43 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=10.8
Q ss_pred hHHHHHHHHhhccCC
Q psy3370 98 KAVTIVLSFVFFAKP 112 (116)
Q Consensus 98 K~~SIlLS~l~Fgh~ 112 (116)
+.+.++..+++|.||
T Consensus 117 r~l~l~~gly~~r~P 131 (156)
T PF08372_consen 117 RVLVLIWGLYKLRHP 131 (156)
T ss_pred HHHHHHHHHHHhcCc
Confidence 566677777788875
No 90
>PRK02935 hypothetical protein; Provisional
Probab=42.96 E-value=94 Score=22.68 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhc
Q psy3370 69 ISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFF 109 (116)
Q Consensus 69 l~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~F 109 (116)
+.-|+|.+| +-+.+..++.+ +==+++++.|.++|
T Consensus 25 ~vMy~Giff------~~~~~~m~ifm-~~G~l~~l~S~vvY 58 (110)
T PRK02935 25 IVMYLGIFF------RESIIIMTIFM-LLGFLAVIASTVVY 58 (110)
T ss_pred HHHHHHHHh------cccHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345777444 33444444444 46788888887765
No 91
>PLN00158 histone H2B; Provisional
Probab=42.57 E-value=18 Score=26.61 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=8.7
Q ss_pred HhhCchHHHHHHHHHHHH
Q psy3370 54 KKNNPVVYIYALLFSISG 71 (116)
Q Consensus 54 K~~hP~~~~~i~~~sl~~ 71 (116)
|+-||+.-..--+.+++.
T Consensus 38 KQVhPd~gIS~kaM~Imn 55 (116)
T PLN00158 38 KQVHPDTGISSKAMSIMN 55 (116)
T ss_pred HHhCCCCCccHHHHHHHH
Confidence 566777544333333333
No 92
>KOG2475|consensus
Probab=40.78 E-value=87 Score=28.69 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3370 66 LFSISGYLGVQVVLTLV 82 (116)
Q Consensus 66 ~~sl~~aiGQ~fIf~ti 82 (116)
-+++.|...|+....++
T Consensus 233 WlaiVGlT~q~i~~~i~ 249 (587)
T KOG2475|consen 233 WLAIVGLTSQMIHKKIT 249 (587)
T ss_pred HHHHhcchHHHHHHHHH
Confidence 34444444555554443
No 93
>KOG1725|consensus
Probab=40.74 E-value=27 Score=27.46 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhCchhhhHhHhh
Q psy3370 68 SISGYLGVQVVLTLVKTCGAFVAVTVTTC 96 (116)
Q Consensus 68 sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~ 96 (116)
++.|++|-+.||..+.+.|.|.|.+|.-+
T Consensus 40 ~~~g~~~l~~v~l~~g~~~~l~cn~ig~~ 68 (186)
T KOG1725|consen 40 VFAGAILLLAVYLLFGSGGPLLCNLIGFL 68 (186)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 67778999999999999999999887643
No 94
>PRK11431 multidrug efflux system protein; Provisional
Probab=40.41 E-value=1.3e+02 Score=21.12 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=19.6
Q ss_pred hHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 91 VTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 91 t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++=+-+-=+.+.++++++|+.++|+
T Consensus 60 AvW~GiG~v~~~lig~~~f~e~~~~ 84 (105)
T PRK11431 60 AVWTGIGAVGAAITGIVLLGESASP 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3334466688899999999999986
No 95
>PRK13499 rhamnose-proton symporter; Provisional
Probab=39.71 E-value=1e+02 Score=26.10 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=42.3
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHhhC-chhhhHhHhhhhHHHHHHHHhhcc
Q psy3370 56 NNPVVYIYALLFSISGYLGVQVVLTLVKTCG-AFVAVTVTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FG-sL~~t~VtT~RK~~SIlLS~l~Fg 110 (116)
-.|..+...++.++.-++||+..+..++.-| |++..+.+=+-=.+..|+..++|+
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~g 123 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIING 123 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcc
Confidence 3466777788889999999999999999998 455555555555667777777777
No 96
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=39.68 E-value=94 Score=25.18 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC-------chhhhHhHhhhhHHHHHHH
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCG-------AFVAVTVTTCRKAVTIVLS 105 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FG-------sL~~t~VtT~RK~~SIlLS 105 (116)
+...++++.+.|++.+.+|+.-+-+++ +++=++..+.+|++..++|
T Consensus 61 ~il~iili~l~G~l~~~~ig~~l~~~~d~~L~RiPlv~~IY~s~kqi~etll~ 113 (222)
T COG2928 61 VILAIILIFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLS 113 (222)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHccCccHHHHHHHHHHHHHHHHh
Confidence 455667777889999999998888877 4566788889999988887
No 97
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=39.36 E-value=37 Score=23.30 Aligned_cols=19 Identities=21% Similarity=0.572 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy3370 59 VVYIYALLFSISGYLGVQV 77 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~f 77 (116)
..+..+.++|+++|+||..
T Consensus 5 W~FL~lsIlcVSgYigQVl 23 (80)
T PF10810_consen 5 WTFLALSILCVSGYIGQVL 23 (80)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 3556778889999999964
No 98
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=38.91 E-value=16 Score=29.89 Aligned_cols=6 Identities=0% Similarity=0.047 Sum_probs=2.3
Q ss_pred hhhhhh
Q psy3370 23 EDLHMC 28 (116)
Q Consensus 23 e~~~~~ 28 (116)
..+.|.
T Consensus 177 ~~vln~ 182 (238)
T PF02084_consen 177 DNVLNN 182 (238)
T ss_pred hhhhcc
Confidence 333333
No 99
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=38.80 E-value=26 Score=28.10 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHhhcc
Q psy3370 95 TCRKAVTIVLSFVFFA 110 (116)
Q Consensus 95 T~RK~~SIlLS~l~Fg 110 (116)
.+|=++-+++=++.+|
T Consensus 158 ivRlilf~i~w~~~~g 173 (224)
T PF03839_consen 158 IVRLILFLITWFFTGG 173 (224)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4665555544444444
No 100
>KOG3130|consensus
Probab=37.24 E-value=10 Score=33.66 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.3
Q ss_pred hhhhhh
Q psy3370 21 EEEDLH 26 (116)
Q Consensus 21 ~~e~~~ 26 (116)
+.+.+.
T Consensus 296 d~e~~~ 301 (514)
T KOG3130|consen 296 DHEALG 301 (514)
T ss_pred chhhhc
Confidence 333333
No 101
>KOG1307|consensus
Probab=36.71 E-value=13 Score=33.56 Aligned_cols=18 Identities=22% Similarity=0.017 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3370 60 VYIYALLFSISGYLGVQV 77 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~f 77 (116)
++..++-.++.+|+=.++
T Consensus 429 FigSIlWIA~fSYLMVWw 446 (588)
T KOG1307|consen 429 FIGSILWIAAFSYLMVWW 446 (588)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 102
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=36.48 E-value=1.2e+02 Score=21.92 Aligned_cols=48 Identities=6% Similarity=-0.054 Sum_probs=26.1
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhh
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVF 108 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~ 108 (116)
.++..+..++++--++.+++.++.-.. .| ...-...|=+++++.++++
T Consensus 76 ~~qls~v~Nilvsv~~~~~~~~~~~~~--~~----~~~~~~~Rvllgl~~al~v 123 (142)
T PF11712_consen 76 KRQLSTVFNILVSVFAVFFAGWYWAGY--SF----GGWSFPYRVLLGLFGALLV 123 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hh----cccchHHHHHHHHHHHHHH
Confidence 345556666555555555444433221 12 2344567888888887765
No 103
>PF15122 TMEM206: TMEM206 protein family
Probab=36.41 E-value=57 Score=27.31 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=26.8
Q ss_pred HhHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3370 52 KKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTC 85 (116)
Q Consensus 52 ~~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~F 85 (116)
|.|..|---+..++++-+..+++.++.|+||..|
T Consensus 6 k~clkn~fsvlLi~iYllLmaVAvflayqTI~df 39 (298)
T PF15122_consen 6 KTCLKNVFSVLLIFIYLLLMAVAVFLAYQTISDF 39 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4455555556677888888899999999999887
No 104
>PF13071 DUF3935: Protein of unknown function (DUF3935)
Probab=36.14 E-value=1.1e+02 Score=20.40 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHH-------HHHHHhhc
Q psy3370 59 VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVT-------IVLSFVFF 109 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~S-------IlLS~l~F 109 (116)
.++...++|++++---|+|+-.+=..-=.....---+.|-+++ +|+|.++|
T Consensus 9 Gi~IsfFVFwfsmLGVqmfaeFlDi~slkF~~gkt~~aR~f~~~yp~~ivfLiSlY~f 66 (68)
T PF13071_consen 9 GIIISFFVFWFSMLGVQMFAEFLDIDSLKFIGGKTEAARAFYSPYPFFIVFLISLYFF 66 (68)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhHhccccHhHHHHhCCccHHHHHHHhHHhe
Confidence 3566778888877767776544322211222222345677666 44576665
No 105
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=36.05 E-value=1.3e+02 Score=21.81 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhc
Q psy3370 59 VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFF 109 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~F 109 (116)
.++....+-++.|.+-=.+||.+|+-+| +....+.++++++-+++
T Consensus 100 ~lw~R~~~St~isq~iDt~if~~iaf~g------~~p~~~~~~ii~~~~~~ 144 (145)
T PF02592_consen 100 SLWLRNNGSTAISQLIDTVIFITIAFYG------VFPFDQILSIILGQYLV 144 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH------HccHHHHHHHHHHHhee
Confidence 4555555555556666667888888666 35567777777776654
No 106
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=35.65 E-value=2e+02 Score=22.44 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy3370 59 VVYIYALLFSISGYLGVQVVL 79 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf 79 (116)
.++..+..+-+++.+|.+.=|
T Consensus 7 ~~~~~~~~illg~~iGg~~G~ 27 (248)
T PF11368_consen 7 RILRFLLLILLGGLIGGFIGF 27 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555655555444
No 107
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=35.63 E-value=1.5e+02 Score=22.66 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhhHh
Q psy3370 64 ALLFSISGYLGVQVVLTLVKTCGAFVAVTV 93 (116)
Q Consensus 64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~V 93 (116)
.++.++...+-+..+..++..+++...+..
T Consensus 21 ~vl~~l~~~li~~~~~~~~~~~~~~~~~~~ 50 (243)
T PF06161_consen 21 AVLICLLIILISSLISFLISIIGSIGVSSF 50 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444444445555566666544333
No 108
>KOG2229|consensus
Probab=35.27 E-value=29 Score=31.70 Aligned_cols=19 Identities=21% Similarity=0.575 Sum_probs=11.4
Q ss_pred CCchhhHhhhhhhhhhhhh
Q psy3370 4 GEEEEEEEEEEEEEEEEEE 22 (116)
Q Consensus 4 ~~~~~e~E~eee~ee~~~~ 22 (116)
++||+.|.++|||+.+-..
T Consensus 168 dee~dsd~~~d~dg~~~~~ 186 (616)
T KOG2229|consen 168 DEEDDSDSESDEDGPDADA 186 (616)
T ss_pred ccccccccccccccccHHH
Confidence 5666666666666555433
No 109
>KOG2348|consensus
Probab=34.50 E-value=15 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=12.2
Q ss_pred hhhHhhhhhhhhhhhhh
Q psy3370 7 EEEEEEEEEEEEEEEEE 23 (116)
Q Consensus 7 ~~e~E~eee~ee~~~~e 23 (116)
++++|+||++|-||+++
T Consensus 532 ~~~a~~~E~~d~e~ek~ 548 (667)
T KOG2348|consen 532 GDDAEAEEIVDAEQEKK 548 (667)
T ss_pred ccccccchhcchhHHHH
Confidence 46677777777777765
No 110
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=33.61 E-value=42 Score=29.10 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKP 112 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~ 112 (116)
.+..++++.++.+.|..-.-....+||+|.++.+ ++|+++|+++|-..
T Consensus 114 ~~~tl~~~~~l~~~~~~~~~~i~d~~~~L~~~~~-----i~s~~~s~~lyik~ 161 (432)
T PF01222_consen 114 FLVTLALFAVLHYYGIFPLTFIYDHFGQLLTAAN-----IFSFILSIFLYIKS 161 (432)
T ss_pred HHHHHHHHHHHHHcCCCChHhHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Confidence 3334444444444444445667789999988775 46778888776543
No 111
>KOG2023|consensus
Probab=33.26 E-value=13 Score=35.05 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.7
Q ss_pred hhhhhhhhh
Q psy3370 21 EEEDLHMCL 29 (116)
Q Consensus 21 ~~e~~~~~~ 29 (116)
..=++..|+
T Consensus 367 ~dWNLRkCS 375 (885)
T KOG2023|consen 367 SDWNLRKCS 375 (885)
T ss_pred ccccHhhcc
Confidence 333444443
No 112
>PF03608 EII-GUT: PTS system enzyme II sorbitol-specific factor; InterPro: IPR004699 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=33.24 E-value=1.7e+02 Score=22.79 Aligned_cols=51 Identities=16% Similarity=0.376 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+....+++++...+||-=|....+..+.-.+ +|=.+.=++|.++++||++.
T Consensus 32 i~Llt~mnali~liGeeRv~k~a~~~~kn~i-----~RY~vLP~i~~F~l~NPM~~ 82 (168)
T PF03608_consen 32 IVLLTAMNALIKLIGEERVEKFAQKCAKNPI-----TRYTVLPVIAVFFLGNPMAY 82 (168)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHhcCccHH
Confidence 3445567788889999888888777665544 68888889999999999864
No 113
>COG4769 Predicted membrane protein [Function unknown]
Probab=32.85 E-value=1e+02 Score=24.32 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhh--hHhHhhhhHHH-----HHHHHhhccC
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVA--VTVTTCRKAVT-----IVLSFVFFAK 111 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~--t~VtT~RK~~S-----IlLS~l~Fgh 111 (116)
+...+++|++|++-.....+.+++||+=.+ .-|.++--|+. ++.|+++|+.
T Consensus 76 fs~~Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 76 FSPVFLYSFAGAILSTLFMYFLYQFGPKYLSLLGISVMGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCceEeeeehhhHHHHHHhHHHHHHHHHHHhcc
Confidence 456778888888888888888899993222 22222322222 5567777664
No 114
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=32.25 E-value=1.5e+02 Score=21.95 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHh-hccCC
Q psy3370 59 VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFV-FFAKP 112 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l-~Fgh~ 112 (116)
+-+.+-++--++|-+||..--..+---|-.-+.-.+.+|++..+++.+. +||-+
T Consensus 56 ~t~lqNIvd~lTGpig~~iA~LAVI~vG~swmfGrldl~~a~~Vv~GI~iVFGA~ 110 (120)
T PRK13857 56 ATMVNNICTFILGPFGQSLAVLGIVAIGISWMFGRASLGLVAGVVGGIVIMFGAS 110 (120)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhheeccH
Confidence 3344444555566666665555555555555566678899999888875 56643
No 115
>COG0767 Ttg2B ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.04 E-value=81 Score=26.07 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhH
Q psy3370 63 YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKA 99 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~ 99 (116)
.+.-|+...++|++.-+.++++.||++++++.--|-.
T Consensus 83 ~L~~fGAe~~~g~lval~~~RElgPvlTal~~AGr~g 119 (267)
T COG0767 83 QLRDFGAEDFSGFLVALSLLRELGPVLTALVVAGRVG 119 (267)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445666677888888888888888888888766654
No 116
>KOG2234|consensus
Probab=31.78 E-value=1.2e+02 Score=25.96 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 68 SISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 68 sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
|+.-++=....|....+..|.+..+...++=+.|-++++++-++.+++
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~ 146 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSR 146 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhH
Confidence 334344445677888899999999999999999999999999998875
No 117
>PF12446 DUF3682: Protein of unknown function (DUF3682); InterPro: IPR022152 This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length.
Probab=31.61 E-value=36 Score=25.50 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=3.6
Q ss_pred hhhhhhhhh
Q psy3370 18 EEEEEEDLH 26 (116)
Q Consensus 18 e~~~~e~~~ 26 (116)
.+|-.|.+.
T Consensus 108 qqqsDE~Qv 116 (133)
T PF12446_consen 108 QQQSDETQV 116 (133)
T ss_pred hhcchHHHH
Confidence 334444443
No 118
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=31.54 E-value=59 Score=22.21 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHh
Q psy3370 65 LLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFV 107 (116)
Q Consensus 65 ~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l 107 (116)
++..++..+++......+.++|+..++.......+.+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~ 45 (162)
T PF01554_consen 3 ALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLI 45 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhc
Confidence 3455666777777888889999999888888888877776643
No 119
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=31.35 E-value=22 Score=26.81 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=5.6
Q ss_pred HhhhhHHHHHH
Q psy3370 94 TTCRKAVTIVL 104 (116)
Q Consensus 94 tT~RK~~SIlL 104 (116)
..+++++++|+
T Consensus 137 ~~~~kLl~vll 147 (149)
T PF08595_consen 137 WRLKKLLEVLL 147 (149)
T ss_pred HHHHHHHHHHc
Confidence 34555555554
No 120
>PRK11380 hypothetical protein; Provisional
Probab=31.28 E-value=1.7e+02 Score=25.31 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCc-----hhhhHhHhhhhHHHHHHHHhhc
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGA-----FVAVTVTTCRKAVTIVLSFVFF 109 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGs-----L~~t~VtT~RK~~SIlLS~l~F 109 (116)
+.-.+.|+++-.+|.+|||..|..-|- +.+.++.-.==++-|+|++++|
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 91 (353)
T PRK11380 38 LLCKWGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLYLLIMLGLIVR 91 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888999999998876553 3334444444455566777765
No 121
>KOG4264|consensus
Probab=30.83 E-value=15 Score=33.69 Aligned_cols=18 Identities=44% Similarity=0.754 Sum_probs=7.8
Q ss_pred CCCCchhhHhhhhhhhhh
Q psy3370 2 GKGEEEEEEEEEEEEEEE 19 (116)
Q Consensus 2 ~~~~~~~e~E~eee~ee~ 19 (116)
|-|+|++||+++||+|+.
T Consensus 86 gsdsEe~ed~~~Edge~~ 103 (694)
T KOG4264|consen 86 GSDSEEKEDEAAEDGEED 103 (694)
T ss_pred cCCcccccccccccCccc
Confidence 334444444444444433
No 122
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=30.16 E-value=43 Score=27.04 Aligned_cols=8 Identities=25% Similarity=0.127 Sum_probs=3.1
Q ss_pred hhhhhhhh
Q psy3370 25 LHMCLNYL 32 (116)
Q Consensus 25 ~~~~~~~~ 32 (116)
+....+-+
T Consensus 151 Ll~ELekI 158 (244)
T PF04889_consen 151 LLRELEKI 158 (244)
T ss_pred HHHHHHHH
Confidence 33333333
No 123
>KOG0526|consensus
Probab=29.51 E-value=13 Score=33.93 Aligned_cols=13 Identities=62% Similarity=0.703 Sum_probs=8.0
Q ss_pred HHHhhHhHhhCch
Q psy3370 47 KKKKKKKKKNNPV 59 (116)
Q Consensus 47 ~~~~~~~K~~hP~ 59 (116)
|+-||+|=..-|-
T Consensus 525 k~~kk~kdpnapk 537 (615)
T KOG0526|consen 525 KKGKKKKDPNAPK 537 (615)
T ss_pred cCcccCCCCCCCc
Confidence 5666666666663
No 124
>KOG1441|consensus
Probab=29.20 E-value=1.2e+02 Score=25.41 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 59 VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
..+..++-++++.++|..+=......=.=-..-++-.+==+++++++.+++++..+.
T Consensus 81 ~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~ 137 (316)
T KOG1441|consen 81 LPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSS 137 (316)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcc
Confidence 456667777777777766654444332222233455555689999999999988765
No 125
>PF00420 Oxidored_q2: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; InterPro: IPR001133 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents NADH:ubiquinone oxidoreductase, chain 4L, as well as NADH-quinone oxidoreductase (1.6.99.5 from EC). In eukaryotes, these enzymes are usually found in either mitochondria or chloroplasts as part of the respiratory-chain NADH dehydrogenase (also known as complex I or NADH-ubiquinone oxidoreductase), an oligomeric enzymatic complex []. However, they are also found in bacteria [] and archaea [] where they are annotated as NuoK subunit.; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_G.
Probab=29.13 E-value=87 Score=20.64 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhHhHhhh
Q psy3370 69 ISGYLGVQVVLTLVKTCGAFVAVTVTTCR 97 (116)
Q Consensus 69 l~~aiGQ~fIf~ti~~FGsL~~t~VtT~R 97 (116)
.-+++|-..+....+.+|+.-+.-.+.+|
T Consensus 66 ~e~algLsllv~~~r~~g~~~~~~l~~Lk 94 (95)
T PF00420_consen 66 CESALGLSLLVSLYRSYGSDDVSSLNLLK 94 (95)
T ss_dssp HHHHHHHHHHHHTTTT-SS-BGGG-----
T ss_pred HHHHHHHHHHHHHHHhhCCccHhHHhhcC
Confidence 33466777777777777777666555443
No 126
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=28.92 E-value=2.1e+02 Score=20.03 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLV 82 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti 82 (116)
++..|++||++.++- .|||.++
T Consensus 41 FF~nIA~FcI~tvlf-sFvfLs~ 62 (90)
T PF11674_consen 41 FFANIAFFCIFTVLF-SFVFLSL 62 (90)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH
Confidence 566788888877653 3444444
No 127
>PRK09823 putative inner membrane protein; Provisional
Probab=28.29 E-value=1.1e+02 Score=23.60 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh--hCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 58 PVVYIYALLFSISGYLGVQVVLTLVKT--CGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 58 P~~~~~i~~~sl~~aiGQ~fIf~ti~~--FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
|..+.-+++.|+---++|.-++.++.. -|++.+++..-+|--+-+..|-++|++.++.
T Consensus 63 pAlLTGVa~AclP~kiyq~~~~R~lacgi~G~vIttLy~~~~~~~~~~~~~liy~~~l~~ 122 (160)
T PRK09823 63 PALLTGVAVACLPEKIYQQKIYRCLACGIGGVVITTLYCAVIVHIKGMASSLIYENILSG 122 (160)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchhhHhhccccc
Confidence 444455555555567888889888864 5778888888888888888899999988753
No 128
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=28.27 E-value=16 Score=33.20 Aligned_cols=37 Identities=38% Similarity=0.684 Sum_probs=26.1
Q ss_pred CCchhhHhhhhhhhhhhhhhhhhhhhhhhHHhHHhHH
Q psy3370 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKK 40 (116)
Q Consensus 4 ~~~~~e~E~eee~ee~~~~e~~~~~~~~~pskKKkkk 40 (116)
++|||++++++|+|++..-.++........++.+..+
T Consensus 4 d~~~e~~~d~~~~~~~~~~~~L~~~i~~l~~~~~~~~ 40 (735)
T PF04615_consen 4 DEEDEDESDDDDEDDEEKHDKLLKAISSLDSKKRKKK 40 (735)
T ss_pred ccccccccccccccChHHHHHHHHHHHhccccccccc
Confidence 5666666567777777777788888888877765443
No 129
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=27.99 E-value=43 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3370 59 VVYIYALLFSISGYLGVQVVLTLVKTC 85 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf~ti~~F 85 (116)
.-...++++++.+.+|.+.|++.|--|
T Consensus 58 ~~~~~iili~lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 58 QNNGNIILISLLSFVCILVILYAIYYF 84 (101)
T ss_pred cccccchHHHHHHHHHHHHHHhhheEE
Confidence 335678888888889999888877544
No 130
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=27.98 E-value=1.9e+02 Score=20.82 Aligned_cols=30 Identities=7% Similarity=0.013 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhh
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVA 90 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~ 90 (116)
+..+++..++++.||+++=.-..+.|++..
T Consensus 4 ~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~ 33 (129)
T PRK02971 4 YLWGLASVLLASVAQLSLKWGMSRLPLLSH 33 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Confidence 456777888899999999999999887554
No 131
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=27.08 E-value=2.2e+02 Score=21.31 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=5.5
Q ss_pred hccCCCCC
Q psy3370 108 FFAKPFTF 115 (116)
Q Consensus 108 ~Fgh~lt~ 115 (116)
.+.|||..
T Consensus 189 ~ld~Pf~G 196 (209)
T PF14023_consen 189 DLDNPFSG 196 (209)
T ss_pred HhcCCCCC
Confidence 47788864
No 132
>PHA03171 UL37 tegument protein; Provisional
Probab=26.99 E-value=21 Score=31.70 Aligned_cols=10 Identities=0% Similarity=0.288 Sum_probs=5.2
Q ss_pred HhhHhHhhCc
Q psy3370 49 KKKKKKKNNP 58 (116)
Q Consensus 49 ~~~~~K~~hP 58 (116)
++...+.+|.
T Consensus 149 rr~a~~~~h~ 158 (499)
T PHA03171 149 RRQARCEQHN 158 (499)
T ss_pred HHHHHHHhcc
Confidence 3445565553
No 133
>PF06732 Pescadillo_N: Pescadillo N-terminus; InterPro: IPR010613 Pescadillo protein localises to distinct substructures of the interphase nucleus including nucleoli, the site of ribosome biogenesis. During mitosis pescadillo closely associates with the periphery of metaphase chromosomes and by late anaphase is associated with nucleolus-derived foci and prenucleolar bodies. Blastomeres in mouse embryos lacking pescadillo arrest at morula stages of development, the nucleoli fail to differentiate and accumulation of ribosomes is inhibited. It has been proposed that in mammalian cells pescadillo is essential for ribosome biogenesis and nucleologenesis and that disruption to its function results in cell cycle arrest []. ; GO: 0042254 ribosome biogenesis, 0005730 nucleolus
Probab=26.77 E-value=1.4e+02 Score=24.87 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=42.9
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCC
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPF 113 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~l 113 (116)
.|+|.+. | ++-=+--+++-+|+|.++...+.+...+|..+|....-...++.-.|.|
T Consensus 117 ERYPtF~-d-ALrDLDDaLs~i~Lfa~lp~~~~i~~~~i~~c~rL~~ef~~yv~~~~~L 173 (281)
T PF06732_consen 117 ERYPTFI-D-ALRDLDDALSMIFLFATLPADKKIPSELIAKCRRLCNEFQHYVIRTRSL 173 (281)
T ss_pred cCCCcHH-H-HHHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455422 2 3445667889999999999999999999999999887777776655554
No 134
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.42 E-value=48 Score=27.69 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 59 VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 59 ~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+.+..+++-++|+..-.++--.+++--++.+.+++-.+.|..--|-..++|+.|.+.
T Consensus 222 d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf 278 (309)
T COG5070 222 DSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNF 278 (309)
T ss_pred HHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhH
Confidence 444455555555544444444556777888888998888888778888888887663
No 135
>PF01944 DUF95: Integral membrane protein DUF95; InterPro: IPR002798 Many members of this family have no known function and are predicted to be integral membrane proteins. Q9V182 from SWISSPROT is annotated as "Stage II sporulation protein M related"; and weakly related to other proteins with similar annotation.
Probab=25.93 E-value=2.5e+02 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3370 57 NPVVYIYALLFSISGYLGVQVVLTLVKTCG 86 (116)
Q Consensus 57 hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FG 86 (116)
-|+-+..+.++.+.++.|..+.+..++...
T Consensus 105 lPHgi~Eipa~~ia~~~g~~~~~~li~~~~ 134 (173)
T PF01944_consen 105 LPHGIFEIPAIIIAAAAGLRLSYYLIKKRR 134 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 377788889999999999999887777654
No 136
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=25.93 E-value=26 Score=30.16 Aligned_cols=15 Identities=47% Similarity=0.601 Sum_probs=6.5
Q ss_pred chhhHhhhhhhhhhh
Q psy3370 6 EEEEEEEEEEEEEEE 20 (116)
Q Consensus 6 ~~~e~E~eee~ee~~ 20 (116)
+++|-++||+|||++
T Consensus 343 ~~eE~tDee~edE~E 357 (388)
T COG5238 343 VTEESTDEESEDEVE 357 (388)
T ss_pred ccccccCccccchHH
Confidence 444444444444443
No 137
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=25.78 E-value=2e+02 Score=18.90 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhH
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVT 94 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~Vt 94 (116)
+.+++.+++.+.+|..+.+.+-...|..+.+.++
T Consensus 19 ~RQl~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 52 (93)
T PF12666_consen 19 LRQLICLAIGALVGVGVYLLLWFFLGPDIASWIM 52 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4566666666666655444444444444444443
No 138
>KOG1581|consensus
Probab=25.65 E-value=1.6e+02 Score=25.27 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=53.7
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
-.|+..++.....|+++.++..|=|-.+++-+=.+.++.-...-+-.+|.-.++++.+.++
T Consensus 77 ~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~ 137 (327)
T KOG1581|consen 77 LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSS 137 (327)
T ss_pred CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCc
Confidence 6788889999999999999999999999998888888888888788888899999988765
No 139
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=25.39 E-value=1.5e+02 Score=28.37 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhcc-CCCCC
Q psy3370 73 LGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFA-KPFTF 115 (116)
Q Consensus 73 iGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fg-h~lt~ 115 (116)
++.+.||+++..|.+++...-.+ ++|+++|=+||+ |-|.|
T Consensus 644 l~llLl~~~~~~y~~~~~~~W~~---v~sll~aPFiFNP~~F~w 684 (817)
T PF02364_consen 644 LLLLLLFYTLTMYIPATLSFWFL---VISLLFAPFIFNPHQFDW 684 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCcccCch
Confidence 44577888888888888777766 789999999998 77776
No 140
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.81 E-value=1.7e+02 Score=22.58 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhCc
Q psy3370 72 YLGVQVVLTLVKTCGA 87 (116)
Q Consensus 72 aiGQ~fIf~ti~~FGs 87 (116)
++||.+| ..||+
T Consensus 32 ~~s~llI----~lFg~ 43 (165)
T PF11286_consen 32 AFSQLLI----ALFGG 43 (165)
T ss_pred HHHHHHH----HHcCC
Confidence 4555555 78886
No 141
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=24.74 E-value=2.2e+02 Score=21.82 Aligned_cols=27 Identities=19% Similarity=0.026 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCch
Q psy3370 62 IYALLFSISGYLGVQVVLTLVKTCGAF 88 (116)
Q Consensus 62 ~~i~~~sl~~aiGQ~fIf~ti~~FGsL 88 (116)
.--++-++|+++...|+|.++.+...-
T Consensus 42 ~vNl~Sal~sA~tv~~l~~~~~~l~~~ 68 (178)
T PF11028_consen 42 RVNLLSALSSALTVLFLFWSITRLLRK 68 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334788899999999999999887554
No 142
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=24.69 E-value=31 Score=32.25 Aligned_cols=12 Identities=8% Similarity=0.395 Sum_probs=6.2
Q ss_pred hHHHHHHHHhhc
Q psy3370 98 KAVTIVLSFVFF 109 (116)
Q Consensus 98 K~~SIlLS~l~F 109 (116)
.|+.+||-++.+
T Consensus 468 ~f~~vLlq~i~~ 479 (840)
T PF04147_consen 468 VFFGVLLQHILY 479 (840)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 143
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=24.68 E-value=1.9e+02 Score=20.84 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHH-HHHHHHh-hcc
Q psy3370 63 YALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAV-TIVLSFV-FFA 110 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~-SIlLS~l-~Fg 110 (116)
+..+=+++|++-..+..+++.+-|+..+++.+.+=|++ |+++..+ |||
T Consensus 66 w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg 115 (138)
T PF04657_consen 66 WAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFG 115 (138)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 44557888888888888999999999888888777765 5666666 666
No 144
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=24.48 E-value=8.6 Score=35.60 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=16.1
Q ss_pred hhhHhhhhhhhhhhhhhhhhhhhhhhHHhH
Q psy3370 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAMKK 36 (116)
Q Consensus 7 ~~e~E~eee~ee~~~~e~~~~~~~~~pskK 36 (116)
||--|+||||--.-.|.-++.+-+.-|.+|
T Consensus 877 d~gteadde~thp~~ek~~s~vrrrrppkk 906 (943)
T PTZ00449 877 DDGTEADDEDTHPPEEKHKSEVRRRRPPKK 906 (943)
T ss_pred CCCccccccccCChhhhhhhhhhhcCCCCC
Confidence 344444444433345555666666666666
No 145
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=24.26 E-value=27 Score=30.56 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q psy3370 65 LLFSISGYLGVQV 77 (116)
Q Consensus 65 ~~~sl~~aiGQ~f 77 (116)
+.-+||-.+||.+
T Consensus 279 l~r~v~~~lGq~Y 291 (404)
T PF12753_consen 279 LYRSVARRLGQSY 291 (404)
T ss_dssp HHHTT-STTS-HH
T ss_pred HHHHHHHHhhHHH
Confidence 3445666677764
No 146
>PF05097 DUF688: Protein of unknown function (DUF688); InterPro: IPR007789 This entry consists of uncharacterised proteins.
Probab=24.25 E-value=25 Score=31.01 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=7.0
Q ss_pred CCchhhHhhhhhhhh
Q psy3370 4 GEEEEEEEEEEEEEE 18 (116)
Q Consensus 4 ~~~~~e~E~eee~ee 18 (116)
+.+|||+|+|+|||+
T Consensus 224 d~~~ee~ed~~ddd~ 238 (446)
T PF05097_consen 224 DIDDEESEDEDDDDE 238 (446)
T ss_pred ccccccccccccccc
Confidence 344555544444444
No 147
>TIGR00821 EII-GUT PTS system, glucitol/sorbitol-specific, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.
Probab=24.22 E-value=2.5e+02 Score=22.12 Aligned_cols=51 Identities=14% Similarity=0.348 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 60 VYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+...++++++...+||-=|....+..+.-.+ +|=.+-=++|.++++||+..
T Consensus 35 i~LL~~mnaiI~liGeeRv~~~A~~~~~n~i-----~RY~vLP~i~~F~l~NPMa~ 85 (181)
T TIGR00821 35 ISLLVIMNALIAFIGQDRIERFAQFCAGNPV-----LRYLVLPFIGTFVFCNPMTL 85 (181)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHcCCch-----hHHHHHHHHHHHHhcCchHH
Confidence 3455667788889999888877776664433 57777888999999999863
No 148
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.58 E-value=1.6e+02 Score=21.59 Aligned_cols=23 Identities=13% Similarity=0.324 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHH
Q psy3370 61 YIYALLFSISGYLGV-QVVLTLVK 83 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ-~fIf~ti~ 83 (116)
+..|++=+++|.+|. +||+|+|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554 34555554
No 149
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=23.57 E-value=84 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=29.0
Q ss_pred hHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q psy3370 53 KKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFV 89 (116)
Q Consensus 53 ~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~ 89 (116)
|-.-||+-+-|-++=+++-++|+.++ .+||.+.
T Consensus 25 KGiGHPDtIcD~iaE~vS~~Ls~~Yl----~~fG~IL 57 (396)
T PF01941_consen 25 KGIGHPDTICDGIAEAVSRALSRYYL----ERFGAIL 57 (396)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHH----HHhCCee
Confidence 55689999999999999999999887 9999753
No 150
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=23.57 E-value=1.6e+02 Score=19.72 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q psy3370 68 SISGYLGVQVV 78 (116)
Q Consensus 68 sl~~aiGQ~fI 78 (116)
|+..-+||+|+
T Consensus 6 slf~kigqlfv 16 (73)
T PF07069_consen 6 SLFNKIGQLFV 16 (73)
T ss_pred HHHHHHHHHHH
Confidence 44555666665
No 151
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=23.52 E-value=1.9e+02 Score=18.36 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCch
Q psy3370 63 YALLFSISGYLGVQVVLTLVKTCGAF 88 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL 88 (116)
-++.+..||--+.+++|...+.+..+
T Consensus 7 ilLsiiT~GIY~l~W~y~~~~~~~~~ 32 (75)
T PF14018_consen 7 ILLSIITCGIYGLYWLYKIWKELNQL 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777665444
No 152
>KOG4553|consensus
Probab=23.48 E-value=13 Score=36.46 Aligned_cols=32 Identities=34% Similarity=0.369 Sum_probs=21.2
Q ss_pred CchhhHhhhh-hhhhhhhhhhhhhhhhhhHHhH
Q psy3370 5 EEEEEEEEEE-EEEEEEEEEDLHMCLNYLAMKK 36 (116)
Q Consensus 5 ~~~~e~E~ee-e~ee~~~~e~~~~~~~~~pskK 36 (116)
+||+|+++|| |+..+++.++-.++.+.+|.++
T Consensus 1321 ~EDged~eEe~EtanenggeDd~~q~~~~~e~k 1353 (1398)
T KOG4553|consen 1321 SEDGEDNEEECETANENGGEDDSMQDEEIEETK 1353 (1398)
T ss_pred ccccccccccccchhcccCCCcccccccccccc
Confidence 4677777777 6666667777666666665443
No 153
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=23.29 E-value=97 Score=20.24 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3370 60 VYIYALLFSISGYLGVQVV 78 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fI 78 (116)
++..|+++|+++.+|..|-
T Consensus 6 Lf~aiLalsla~s~gavCe 24 (59)
T PF03823_consen 6 LFAAILALSLARSFGAVCE 24 (59)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 5667788888888777653
No 154
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=23.27 E-value=85 Score=27.47 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=28.8
Q ss_pred hHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchh
Q psy3370 53 KKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFV 89 (116)
Q Consensus 53 ~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~ 89 (116)
|-.-||+-+-|-++=+++-++|+.++ .+||.+.
T Consensus 25 KGiGHPDticD~iaE~~S~~Ls~~Yl----~~fG~IL 57 (399)
T PRK04439 25 KGIGHPDTICDGIAEAVSRALSRYYL----EKFGAIL 57 (399)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHH----HHhCCee
Confidence 45679999999999999999999887 8999753
No 155
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.20 E-value=27 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCchhhhHhH
Q psy3370 63 YALLFSISGYLGVQVVLTLVKTCGAFVAVTVT 94 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~Vt 94 (116)
.++++++.-+++.+|...++++|||..-++..
T Consensus 110 ~~l~l~~lLaL~vW~Ym~lLr~~GAs~WtiLa 141 (381)
T PF05297_consen 110 VILFLCCLLALGVWFYMWLLRELGASFWTILA 141 (381)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45667777889999999999999986555433
No 156
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=23.15 E-value=1.8e+02 Score=20.63 Aligned_cols=18 Identities=6% Similarity=0.109 Sum_probs=6.9
Q ss_pred CchHHHHHHHHHHHHHHH
Q psy3370 57 NPVVYIYALLFSISGYLG 74 (116)
Q Consensus 57 hP~~~~~i~~~sl~~aiG 74 (116)
|..++..++..++....+
T Consensus 91 ~~~F~~fl~~~~~~~~~~ 108 (174)
T PF01529_consen 91 HRYFLLFLLYLCLYCLYF 108 (174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333433333333333333
No 157
>PRK10835 hypothetical protein; Provisional
Probab=23.02 E-value=1.7e+02 Score=24.38 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3370 63 YALLFSISGYLGVQVV 78 (116)
Q Consensus 63 ~i~~~sl~~aiGQ~fI 78 (116)
.+-=.|+++|++|..|
T Consensus 297 ~~GrmaLTnYl~QSii 312 (373)
T PRK10835 297 CVGRMALTNYLLQTLI 312 (373)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333455555555554
No 158
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=22.77 E-value=3.1e+02 Score=19.95 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3370 62 IYALLFSISGYLGVQVVLTLVK 83 (116)
Q Consensus 62 ~~i~~~sl~~aiGQ~fIf~ti~ 83 (116)
.|-+.+.++..+|...++..+.
T Consensus 62 ~D~~~l~~~~vvg~v~~~~~~~ 83 (141)
T PF12576_consen 62 FDRVKLGVSAVVGGVAVFVKLV 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666555554433
No 159
>PF12664 DUF3789: Protein of unknown function (DUF3789); InterPro: IPR024522 This family of functionally uncharacterised bacterial proteins are approximately 40 amino acids in length. They contain two completely conserved residues (V and C) that may be functionally important.
Probab=22.42 E-value=79 Score=18.44 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3370 60 VYIYALLFSISGYLGVQVV 78 (116)
Q Consensus 60 ~~~~i~~~sl~~aiGQ~fI 78 (116)
++.+++++++.+.+|....
T Consensus 2 ~~~~~l~~~~G~~~GVvlM 20 (34)
T PF12664_consen 2 MLKDILGFSLGGMIGVVLM 20 (34)
T ss_pred cHHHHHHHHccchHhHHHH
Confidence 5778899999988887654
No 160
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=22.08 E-value=4.1e+02 Score=22.37 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=13.1
Q ss_pred HHHHHHHHhhccCCCCC
Q psy3370 99 AVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 99 ~~SIlLS~l~Fgh~lt~ 115 (116)
.+-.++++++|+++++.
T Consensus 249 tl~fllav~i~~E~~~~ 265 (293)
T COG2962 249 TLMFLLAVLIFGEPFDS 265 (293)
T ss_pred HHHHHHHHHHcCCCCCH
Confidence 35568899999998874
No 161
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=22.01 E-value=3.1e+02 Score=21.96 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=18.0
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHH
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLT 80 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ 80 (116)
.+.|.-.+.+++-|+.|++..++++.
T Consensus 27 ~~~~~~~~Rll~~A~~Gal~~~~~~~ 52 (293)
T PF03419_consen 27 LKRRASRWRLLLGAAIGALYSLLIFF 52 (293)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 34455566778888888887766665
No 162
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.65 E-value=1.3e+02 Score=24.08 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=20.3
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHH
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTL 81 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~t 81 (116)
-|-|+++.-+=+.+.++.+|..+|...
T Consensus 28 lRfPD~YtRLHAATKa~TLGv~LILlg 54 (197)
T PRK12585 28 IRLPDVYTRTHAAGISNTFGVSLLLFA 54 (197)
T ss_pred HhcCcHHHHhhccccchhhhHHHHHHH
Confidence 367888888888888888887776643
No 163
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=21.50 E-value=1e+02 Score=22.04 Aligned_cols=33 Identities=12% Similarity=-0.136 Sum_probs=25.1
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHh-hCch
Q psy3370 56 NNPVVYIYALLFSISGYLGVQVVLTLVKT-CGAF 88 (116)
Q Consensus 56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~-FGsL 88 (116)
-+..++..++..++..+++.+++|+..-. ||.-
T Consensus 46 ~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~~~~~ 79 (182)
T PF00689_consen 46 INKRLLRRILIQGLIMAAACFFAFFLGLYIFGWD 79 (182)
T ss_dssp SSHHHHHHHCCHHHHHHHHHHHHHHHHHHSTCSS
T ss_pred ccHHhHhHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34557888899999999999999876665 5533
No 164
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=21.41 E-value=60 Score=23.27 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=16.9
Q ss_pred HhhhhHHHHHHHHhhccCCCCC
Q psy3370 94 TTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 94 tT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+=+==+.+.++++++|+.++++
T Consensus 64 ~GiG~v~~~l~g~~~f~E~l~~ 85 (106)
T COG2076 64 TGIGIVGTALVGVLLFGESLSL 85 (106)
T ss_pred HHHHHHHHHHHHHHhcCCcCCH
Confidence 3344567888999999999875
No 165
>COG3730 SrlA Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]
Probab=21.17 E-value=3e+02 Score=21.48 Aligned_cols=50 Identities=16% Similarity=0.396 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 61 ~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
....+.+++...+||-=|-...+..|.- ..+|=.+-=+|++++|.||++.
T Consensus 36 ~Ll~~~nali~~iG~eRi~r~a~~~~~n-----~i~rY~llPvl~~f~~~nPma~ 85 (176)
T COG3730 36 SLLVAMNALINFIGQERIERFAQRCAGN-----PISRYLLLPVLGTFFFCNPMAL 85 (176)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhccC-----chHHHhHHHHHHHHhhcCchHH
Confidence 3455678888999999998887776653 4467778888999999999764
No 166
>KOG4813|consensus
Probab=21.09 E-value=16 Score=29.97 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=6.3
Q ss_pred HHHHhhCchhhhH
Q psy3370 80 TLVKTCGAFVAVT 92 (116)
Q Consensus 80 ~ti~~FGsL~~t~ 92 (116)
..-.+|++++-.+
T Consensus 157 ~ks~~Y~~f~~dL 169 (248)
T KOG4813|consen 157 EKSLHYASFLKDL 169 (248)
T ss_pred cchhhHHHHHHHH
Confidence 4445555544433
No 167
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.01 E-value=1e+02 Score=24.62 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q psy3370 62 IYALLFSISGYLG 74 (116)
Q Consensus 62 ~~i~~~sl~~aiG 74 (116)
-.|++|+|..+||
T Consensus 20 ~lIlaF~vSm~iG 32 (197)
T PF15179_consen 20 DLILAFCVSMAIG 32 (197)
T ss_pred hHHHHHHHHHHHH
Confidence 4578899999988
No 168
>PF07149 Pes-10: Pes-10; InterPro: IPR009819 This family consists of several Caenorhabditis elegans pes-10 and related proteins. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=20.98 E-value=1.1e+02 Score=26.51 Aligned_cols=41 Identities=7% Similarity=0.031 Sum_probs=27.9
Q ss_pred hHhhCchHHHHHHHHHHHHHH---HHHHHHHHHHhhCchhhhHh
Q psy3370 53 KKKNNPVVYIYALLFSISGYL---GVQVVLTLVKTCGAFVAVTV 93 (116)
Q Consensus 53 ~K~~hP~~~~~i~~~sl~~ai---GQ~fIf~ti~~FGsL~~t~V 93 (116)
...+.-++++.|++.-+++++ -+..|.+.|..+|..-+..-
T Consensus 200 ~~~~~~~~~~EI~M~~La~~iksgn~~~I~~AI~~~~~~~~pL~ 243 (370)
T PF07149_consen 200 EEFRFDAAIMEICMRNLAQSIKSGNEEKISAAIKFFGEFEFPLE 243 (370)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhccCCCHH
Confidence 344556678888888777765 36677788887776655543
No 169
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=20.96 E-value=3.1e+02 Score=19.34 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=18.8
Q ss_pred HhHhhhhHHHHHHHHhhccCCCCC
Q psy3370 92 TVTTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 92 ~VtT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
+-+-+-=+.+.++++++|+.++++
T Consensus 67 vW~GiG~v~~~~ig~~~f~e~~~~ 90 (109)
T PRK10650 67 LWGGFGIAATLAAGWILFGQRLNR 90 (109)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCH
Confidence 334466678889999999999885
No 170
>KOG4433|consensus
Probab=20.51 E-value=1.1e+02 Score=27.75 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhhH
Q psy3370 64 ALLFSISGYLGVQVVLTLVKTCGAFVAVT 92 (116)
Q Consensus 64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~ 92 (116)
+++||+||.++....+..+.-++|+.+++
T Consensus 239 li~fsv~Gll~lvisWl~~gl~la~sVa~ 267 (526)
T KOG4433|consen 239 LIVFSVCGLLALVISWLSLGLELASSVAL 267 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHhhh
Confidence 45667777777777777777777776654
No 171
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.49 E-value=3.6e+02 Score=21.75 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=0.0
Q ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhcc
Q psy3370 54 KKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 54 K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fg 110 (116)
+.++|.+.+.+++.-+...+--+.|-+++. +..+..++-.+ +-+|+..++|+
T Consensus 21 rk~dp~l~~~ml~a~l~~~~v~v~ig~l~~--~~~~~~i~gi~---~g~l~am~vl~ 72 (224)
T PF13829_consen 21 RKEDPKLPWLMLGAFLGPIAVFVLIGLLFG--SWWYWLIIGIL---LGLLAAMIVLS 72 (224)
T ss_pred HHHCcchHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHH---HHHHHHHHHHH
No 172
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=20.43 E-value=3.9e+02 Score=20.99 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=17.5
Q ss_pred hCchHHHHHH---HHHHHHHHHHHHHHHH
Q psy3370 56 NNPVVYIYAL---LFSISGYLGVQVVLTL 81 (116)
Q Consensus 56 ~hP~~~~~i~---~~sl~~aiGQ~fIf~t 81 (116)
+=|-+++.++ .|+++|++.|.+.+..
T Consensus 62 kvPlLI~L~l~l~~F~l~G~~lq~~~~~~ 90 (202)
T PF07290_consen 62 KVPLLIWLVLLLSSFGLIGYLLQYVAISL 90 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466555544 5888888888877555
No 173
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=20.41 E-value=40 Score=28.99 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=5.6
Q ss_pred HhHhhCchH
Q psy3370 52 KKKKNNPVV 60 (116)
Q Consensus 52 ~~K~~hP~~ 60 (116)
.-.+.||-+
T Consensus 357 ~~~AtNPiL 365 (392)
T COG5414 357 MESATNPIL 365 (392)
T ss_pred HHhhcCHHH
Confidence 556677753
No 174
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=20.21 E-value=1.5e+02 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--CchhhhHhHhhhhHHHHHHHHhhc
Q psy3370 65 LLFSISGYLGVQVVLTLVKTC--GAFVAVTVTTCRKAVTIVLSFVFF 109 (116)
Q Consensus 65 ~~~sl~~aiGQ~fIf~ti~~F--GsL~~t~VtT~RK~~SIlLS~l~F 109 (116)
.+-|+.+++..++.=|++..| ..+..- |..+=+-+-|++|.++|
T Consensus 110 ~fggl~~s~~vli~~yv~~~~~~~~~~~G-va~vlqN~lI~~Sslvl 155 (166)
T PF05255_consen 110 SFGGLAGSVWVLILKYVVPQYTKPTLWPG-VANVLQNALIFLSSLVL 155 (166)
T ss_pred HHHHHHHHHHHhhcccccCCCCCCCcccc-cHHHHHHHHHHHHHHHH
Confidence 334566677777777788854 444333 33344777788877643
No 175
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=20.01 E-value=3.1e+02 Score=20.97 Aligned_cols=58 Identities=21% Similarity=0.061 Sum_probs=37.3
Q ss_pred hHhHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCch------hhhHhHhhhhHHHHHHHHhhcc
Q psy3370 51 KKKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAF------VAVTVTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 51 ~~~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL------~~t~VtT~RK~~SIlLS~l~Fg 110 (116)
.+.+.+|+.+..-++++.+.+++|.. ..+..++|++ ...+.++.==.+|..++-.+|+
T Consensus 77 ~~~r~~H~~~g~~ll~~~~L~~lGG~--~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~ 140 (175)
T PF13301_consen 77 LKARDRHYRLGFALLAFMGLGALGGQ--LGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQIQK 140 (175)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcch--HHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35677899988877777777777653 3445555553 3445555555667766666665
Done!