Query psy3370
Match_columns 116
No_of_seqs 135 out of 394
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:20:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 92.7 0.14 4.9E-06 36.5 4.4 52 65-116 34-86 (137)
2 3b5d_A Multidrug transporter E 90.1 1 3.5E-05 30.3 6.4 46 69-115 38-85 (110)
3 3cx5_F Cytochrome B-C1 complex 68.2 1 3.6E-05 33.1 -0.0 8 73-80 123-130 (146)
4 1rk8_A CG8781-PA, CG8781-PA pr 40.8 5.8 0.0002 27.4 0.0 17 77-93 88-104 (165)
5 1914_A Signal recognition part 25.0 5.7 0.0002 31.0 -2.4 9 55-63 133-141 (232)
6 2k9p_A Pheromone alpha factor 21.6 1.1E+02 0.0038 19.8 3.7 34 55-88 46-79 (80)
7 4hpv_A S-adenosylmethionine sy 21.4 54 0.0018 27.6 2.6 32 53-88 28-59 (407)
8 3i2d_A E3 SUMO-protein ligase 20.7 22 0.00075 29.4 0.1 11 14-24 344-354 (371)
9 3bbo_G Ribosomal protein L4; l 19.4 23 0.00079 28.4 0.0 15 11-25 265-279 (293)
10 3tnp_B CAMP-dependent protein 17.6 27 0.00092 27.7 0.0 21 4-24 84-104 (416)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=92.70 E-value=0.14 Score=36.51 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCchhhhHh-HhhhhHHHHHHHHhhccCCCCCC
Q psy3370 65 LLFSISGYLGVQVVLTLVKTCGAFVAVTV-TTCRKAVTIVLSFVFFAKPFTFQ 116 (116)
Q Consensus 65 ~~~sl~~aiGQ~fIf~ti~~FGsL~~t~V-tT~RK~~SIlLS~l~Fgh~lt~~ 116 (116)
++-.++..++.++.++.++.-+.-++..+ +.+-=++++++|+++|+.++|++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~ 86 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP 86 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34445566677777777887777767777 78999999999999999999863
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=90.08 E-value=1 Score=30.33 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhCchhhh-Hh-HhhhhHHHHHHHHhhccCCCCC
Q psy3370 69 ISGYLGVQVVLTLVKTCGAFVAV-TV-TTCRKAVTIVLSFVFFAKPFTF 115 (116)
Q Consensus 69 l~~aiGQ~fIf~ti~~FGsL~~t-~V-tT~RK~~SIlLS~l~Fgh~lt~ 115 (116)
++..++.++..+.++ ..++..+ .+ +.+-=++++++|+++|+.++|+
T Consensus 38 ~~~~~~~~~~~~al~-~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~ 85 (110)
T 3b5d_A 38 ICYCASFWLLAQTLA-YIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHHHHHH-hCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH
Confidence 334444455555555 4555554 55 6788999999999999999985
No 3
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=68.15 E-value=1 Score=33.08 Aligned_cols=8 Identities=13% Similarity=-0.056 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q psy3370 73 LGVQVVLT 80 (116)
Q Consensus 73 iGQ~fIf~ 80 (116)
+||+|-|+
T Consensus 123 ~eE~Fdl~ 130 (146)
T 3cx5_F 123 VEEFFHLQ 130 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555443
No 4
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=40.79 E-value=5.8 Score=27.43 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=9.2
Q ss_pred HHHHHHHhhCchhhhHh
Q psy3370 77 VVLTLVKTCGAFVAVTV 93 (116)
Q Consensus 77 fIf~ti~~FGsL~~t~V 93 (116)
-|......||.+.-+.+
T Consensus 88 ~L~~~F~~~G~i~~v~i 104 (165)
T 1rk8_A 88 EIQEKFCDYGEIKNIHL 104 (165)
T ss_dssp HHHHHHGGGSCEEEEEE
T ss_pred HHHHHhhcCCCEEEEEE
Confidence 34455567776654433
No 5
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=25.02 E-value=5.7 Score=31.02 Aligned_cols=9 Identities=0% Similarity=-0.569 Sum_probs=1.3
Q ss_pred hhCchHHHH
Q psy3370 55 KNNPVVYIY 63 (116)
Q Consensus 55 ~~hP~~~~~ 63 (116)
.+.-....|
T Consensus 133 ~~~~~~~~~ 141 (232)
T 1914_A 133 QKLISEEDD 141 (232)
T ss_dssp EEC------
T ss_pred hhhhhhhhc
Confidence 444333334
No 6
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=21.64 E-value=1.1e+02 Score=19.80 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=20.6
Q ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q psy3370 55 KNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAF 88 (116)
Q Consensus 55 ~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL 88 (116)
.|-|-++.+.+.+.+.-.=+.+++-|....|+|+
T Consensus 46 rrspiF~lN~~~L~l~iirs~l~~~y~~~~~~S~ 79 (80)
T 2k9p_A 46 RKTPIFIINQVSLFLIILHSALYFKYLLSNYSSV 79 (80)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 4567666666666655555555555566666665
No 7
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=21.41 E-value=54 Score=27.57 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=28.5
Q ss_pred hHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Q psy3370 53 KKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAF 88 (116)
Q Consensus 53 ~K~~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~FGsL 88 (116)
|-.-||+-+-|-++=+++-++|+.++ .+||.+
T Consensus 28 KGiGHPDsIcDgiaE~vS~aLs~~Yl----~~fG~I 59 (407)
T 4hpv_A 28 KGLGHPDYIADAVAEEASRKLSLYYL----KKYGVI 59 (407)
T ss_dssp ECTTSHHHHHHHHHHHHHHHHHHHHH----HHHSSC
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHH----HHhCCe
Confidence 45679999999999999999999887 999975
No 8
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=20.72 E-value=22 Score=29.41 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhhhhhhhhh
Q psy3370 14 EEEEEEEEEED 24 (116)
Q Consensus 14 ee~ee~~~~e~ 24 (116)
|+||++-++++
T Consensus 344 d~~~~~~~~~~ 354 (371)
T 3i2d_A 344 DSNDGSRSPEK 354 (371)
T ss_dssp -----------
T ss_pred cccCCCCCccc
Confidence 33333333333
No 9
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=19.44 E-value=23 Score=28.36 Aligned_cols=15 Identities=67% Similarity=0.900 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhh
Q psy3370 11 EEEEEEEEEEEEEDL 25 (116)
Q Consensus 11 E~eee~ee~~~~e~~ 25 (116)
|+||||||++++..+
T Consensus 265 ~~~~~~~~~~~~~~~ 279 (293)
T 3bbo_G 265 EDEDEEEEEEEEGEE 279 (293)
T ss_dssp ---------------
T ss_pred cccccchhhhccccc
No 10
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=17.58 E-value=27 Score=27.74 Aligned_cols=21 Identities=29% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCchhhHhhhhhhhhhhhhhh
Q psy3370 4 GEEEEEEEEEEEEEEEEEEED 24 (116)
Q Consensus 4 ~~~~~e~E~eee~ee~~~~e~ 24 (116)
++||+++|+||+|++...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ 104 (416)
T 3tnp_B 84 DSENGEEEEAAEAGAFNAPVI 104 (416)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccCCCCc
Done!