Query psy3370
Match_columns 116
No_of_seqs 135 out of 394
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 23:20:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3370.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3370hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 36.7 18 0.0013 19.4 3.1 30 56-85 1-30 (37)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 33.9 42 0.003 24.1 5.8 45 64-112 5-49 (248)
3 d2aa1b1 a.1.1.2 (B:1-146) Hemo 26.1 49 0.0035 20.7 4.5 37 72-108 105-142 (146)
4 d1spgb_ a.1.1.2 (B:) Hemoglobi 26.1 53 0.0039 20.8 4.8 36 72-107 105-142 (147)
5 d1pv7a_ f.38.1.2 (A:) Lactose 22.0 97 0.0071 20.0 5.6 44 67-110 358-401 (417)
6 d1cg5a_ a.1.1.2 (A:) Hemoglobi 21.5 72 0.0052 19.9 4.7 37 72-108 101-137 (141)
7 d1cg5b_ a.1.1.2 (B:) Hemoglobi 21.2 72 0.0053 20.0 4.7 36 72-107 100-136 (141)
8 d1gcvb_ a.1.1.2 (B:) Hemoglobi 20.8 76 0.0055 19.8 4.7 36 72-107 95-131 (136)
9 d1v4wb_ a.1.1.2 (B:) Hemoglobi 20.8 76 0.0056 19.7 4.7 36 72-107 105-141 (146)
10 d1gcva_ a.1.1.2 (A:) Hemoglobi 20.6 76 0.0055 19.8 4.6 35 73-107 101-135 (140)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=36.70 E-value=18 Score=19.36 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=21.9
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3370 56 NNPVVYIYALLFSISGYLGVQVVLTLVKTC 85 (116)
Q Consensus 56 ~hP~~~~~i~~~sl~~aiGQ~fIf~ti~~F 85 (116)
++|.=+..+++|.++-.++|+|.-.-=+.|
T Consensus 1 Q~p~Rv~gl~~F~~~v~laQi~lVlKKKQ~ 30 (37)
T d1vf5c3 1 QDPNRVKWMIAFICLVMLAQLMLILKKKQV 30 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367767778899999999998875543333
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=33.92 E-value=42 Score=24.05 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhccCC
Q psy3370 64 ALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKP 112 (116)
Q Consensus 64 i~~~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fgh~ 112 (116)
++++++..+++.+.++.++.. |+..+++++. ++++++.+++|.++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~-~~~~~a~~~~---~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQ-GEYLFAITTL---ILSSAGLYIFANRK 49 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGG-GCHHHHHHHH---HHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHc-chHHHHHHHH---HHHHheEEEEEccC
Confidence 467788888888877777654 4444444443 34556666666654
No 3
>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=26.13 E-value=49 Score=20.65 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhCc-hhhhHhHhhhhHHHHHHHHhh
Q psy3370 72 YLGVQVVLTLVKTCGA-FVAVTVTTCRKAVTIVLSFVF 108 (116)
Q Consensus 72 aiGQ~fIf~ti~~FGs-L~~t~VtT~RK~~SIlLS~l~ 108 (116)
.+|+.++-.+-..+|+ .+-.+...-+|+++++..++.
T Consensus 105 ~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~i~~~l~ 142 (146)
T d2aa1b1 105 LLADCLTIVVAARFGSAFTGEVQAAFQKFMAVVVSSLG 142 (146)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHH
Confidence 4566666666677777 566777788899999887763
No 4
>d1spgb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Fish (Leiostomus xanthurus) [TaxId: 59837]}
Probab=26.11 E-value=53 Score=20.79 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhC--chhhhHhHhhhhHHHHHHHHh
Q psy3370 72 YLGVQVVLTLVKTCG--AFVAVTVTTCRKAVTIVLSFV 107 (116)
Q Consensus 72 aiGQ~fIf~ti~~FG--sL~~t~VtT~RK~~SIlLS~l 107 (116)
.+|..++..+-..+| ..+-.+...-.|+++++.+.+
T Consensus 105 ~l~~~ll~~l~~~lG~~~fT~e~~~AW~k~~~~v~~~l 142 (147)
T d1spgb_ 105 LLGEIITMCVGAKFGPSAFTPEIHEAWQKFLAVVVSAL 142 (147)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHH
Confidence 356666766667777 367777888899999988776
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=21.95 E-value=97 Score=19.97 Aligned_cols=44 Identities=9% Similarity=-0.073 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhhcc
Q psy3370 67 FSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFA 110 (116)
Q Consensus 67 ~sl~~aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~Fg 110 (116)
.++.+.+|..+.=++...+|.-.+-.+...==++..++++++..
T Consensus 358 ~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 358 KQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555666666666677777554444444444555566665554
No 6
>d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=21.49 E-value=72 Score=19.91 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHhh
Q psy3370 72 YLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVF 108 (116)
Q Consensus 72 aiGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l~ 108 (116)
.+|+.++..+-..+|..+-.+-..-.|++.++..++.
T Consensus 101 ~~~~~ll~~l~~~lg~~t~e~~~AW~k~~~~i~~~l~ 137 (141)
T d1cg5a_ 101 LFADCIVVTLAVNLQAFTPVTHCAVDKFLELVAYELS 137 (141)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455556555567787777777788888888877663
No 7
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=21.24 E-value=72 Score=19.99 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhCc-hhhhHhHhhhhHHHHHHHHh
Q psy3370 72 YLGVQVVLTLVKTCGA-FVAVTVTTCRKAVTIVLSFV 107 (116)
Q Consensus 72 aiGQ~fIf~ti~~FGs-L~~t~VtT~RK~~SIlLS~l 107 (116)
.+|+.++..+-..+|+ .+-.+...-.|++.++..++
T Consensus 100 ~~g~~ll~~l~~~lg~~ft~e~~~AW~k~~~~va~~l 136 (141)
T d1cg5b_ 100 LLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEAL 136 (141)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776 56667777788888877654
No 8
>d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
Probab=20.83 E-value=76 Score=19.85 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhCc-hhhhHhHhhhhHHHHHHHHh
Q psy3370 72 YLGVQVVLTLVKTCGA-FVAVTVTTCRKAVTIVLSFV 107 (116)
Q Consensus 72 aiGQ~fIf~ti~~FGs-L~~t~VtT~RK~~SIlLS~l 107 (116)
.+|+.++..+-..+|. .+..+...-+|+|.++...+
T Consensus 95 ~~g~~ll~~L~~~lg~~fT~e~~~AW~K~~~~va~~l 131 (136)
T d1gcvb_ 95 LLTDCIIVELAYLRKDCFTPHIQGIWDKFFEVVIDAI 131 (136)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665 45556667788888877654
No 9
>d1v4wb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=20.76 E-value=76 Score=19.74 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCc-hhhhHhHhhhhHHHHHHHHh
Q psy3370 72 YLGVQVVLTLVKTCGA-FVAVTVTTCRKAVTIVLSFV 107 (116)
Q Consensus 72 aiGQ~fIf~ti~~FGs-L~~t~VtT~RK~~SIlLS~l 107 (116)
.+|+.++-++-..+|+ .+-.+...-.|+++++...+
T Consensus 105 ~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~v~~~l 141 (146)
T d1v4wb_ 105 ILGDCLTVVIAANLGDAFTVETQCAFQKFLAVVVFAL 141 (146)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776 56667777888888887665
No 10
>d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
Probab=20.61 E-value=76 Score=19.76 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhCchhhhHhHhhhhHHHHHHHHh
Q psy3370 73 LGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFV 107 (116)
Q Consensus 73 iGQ~fIf~ti~~FGsL~~t~VtT~RK~~SIlLS~l 107 (116)
+|+.++..+-..+|..+-.+-..-.|+|.++.+.+
T Consensus 101 ~~~~ll~~l~~~~g~ft~e~~~AW~K~l~~v~~~l 135 (140)
T d1gcva_ 101 LSECIIVTLATHLTEFSPDTHCAVDKLLSAICQEL 135 (140)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45555555555667666666677788888887765
Done!