RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3370
(116 letters)
>gnl|CDD|219846 pfam08449, UAA, UAA transporter family. This family includes
transporters with a specificity for
UDP-N-acetylglucosamine.
Length = 303
Score = 81.9 bits (203), Expect = 5e-20
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 56 NNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFAKPFTF 115
+P V Y LL S++ Y+G V L+ GA VTT RK V+++LS + F P T
Sbjct: 220 RHPSVLFYLLLNSLTQYVGQFFVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTL 279
Query: 116 Q 116
Q
Sbjct: 280 Q 280
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 45.8 bits (108), Expect = 9e-07
Identities = 20/23 (86%), Positives = 21/23 (91%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G EEEEEEEEEEEEEEEEEEE+
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEE 883
Score = 45.0 bits (106), Expect = 2e-06
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKK 38
EEEEEEEEEEEEEEEEEE + + L + ++K+
Sbjct: 872 EEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEEEEE+
Sbjct: 869 EEEEEEEEEEEEEEEEEEEE 888
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEEEEE+
Sbjct: 866 EEEEEEEEEEEEEEEEEEEE 885
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEEEEE+
Sbjct: 871 EEEEEEEEEEEEEEEEEEEN 890
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEEEEE+
Sbjct: 867 EEEEEEEEEEEEEEEEEEEE 886
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEEEEE+
Sbjct: 868 EEEEEEEEEEEEEEEEEEEE 887
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEEEEE+
Sbjct: 870 EEEEEEEEEEEEEEEEEEEE 889
Score = 43.8 bits (103), Expect = 4e-06
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEEEEE+
Sbjct: 865 EEEEEEEEEEEEEEEEEEEE 884
Score = 42.3 bits (99), Expect = 1e-05
Identities = 19/23 (82%), Positives = 20/23 (86%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G EEEEEEEEEEEEEEEEEE+
Sbjct: 860 GGDSEEEEEEEEEEEEEEEEEEE 882
Score = 41.1 bits (96), Expect = 4e-05
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G + EEEEEEEEEEEEEEEE+
Sbjct: 858 SDGGDSEEEEEEEEEEEEEEEEE 880
Score = 35.7 bits (82), Expect = 0.002
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G + + EEEEEEEEEEEEEE+
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEEE 878
Score = 33.4 bits (76), Expect = 0.018
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G G + + EEEEEEEEEEEEE+
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEE 877
Score = 32.7 bits (74), Expect = 0.035
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G G + + EEEEEEEEEEEE+
Sbjct: 854 GGGGSDGGDSEEEEEEEEEEEEE 876
Score = 25.7 bits (56), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 3 KGEEEEEEEE--EEEEEEEEEEED 24
KG + + + EEEEEEEEE+
Sbjct: 850 KGVDGGGGSDGGDSEEEEEEEEEE 873
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 40.8 bits (96), Expect = 4e-05
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLN 30
EEEEEEEEE EEEEEEEE+
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFE 331
Score = 40.0 bits (94), Expect = 9e-05
Identities = 16/22 (72%), Positives = 16/22 (72%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
EEEEE EEEEEEEEEEE
Sbjct: 309 EEEEEEVPEEEEEEEEEEERTF 330
Score = 38.9 bits (91), Expect = 2e-04
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEE EEEEEEE+
Sbjct: 305 PEEEEEEEEEVPEEEEEEEE 324
Score = 37.3 bits (87), Expect = 6e-04
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
E EEEEEEEEE EEEEEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEE 322
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
E EEEEEEEEE EEEEE
Sbjct: 303 PEPEEEEEEEEEVPEEEEE 321
Score = 35.4 bits (82), Expect = 0.003
Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 2 GKGEEEEEEEEEEEEEEEE---EEE 23
+ EEE EEEEEEEEEEE EEE
Sbjct: 309 EEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 34.6 bits (80), Expect = 0.006
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
E EEEEEEEEE EEEE
Sbjct: 302 PPEPEEEEEEEEEVPEEEE 320
Score = 34.2 bits (79), Expect = 0.008
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E EEEEEEEEE EEE+
Sbjct: 301 SPPEPEEEEEEEEEVPEEEE 320
Score = 33.5 bits (77), Expect = 0.016
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE EEEEEEEEEEE E+
Sbjct: 313 EEVPEEEEEEEEEEERTFEE 332
Score = 32.3 bits (74), Expect = 0.036
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E EEEEEEEEE EE+
Sbjct: 300 PSPPEPEEEEEEEEEVPEEE 319
Score = 28.5 bits (64), Expect = 0.86
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 7 EEEEEEEEEEEEEEEEEDL 25
E EEEEEEEEE +
Sbjct: 300 PSPPEPEEEEEEEEEVPEE 318
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 39.2 bits (92), Expect = 2e-04
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
+KK+K+K+K K KK+ + KN
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKN 421
Score = 38.8 bits (91), Expect = 2e-04
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNN 57
LA + +KK+K+K+K K KK+ + N
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKN 421
Score = 37.2 bits (87), Expect = 8e-04
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNNP 58
K+K+K K KK+ + K K+ P
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 36.1 bits (84), Expect = 0.002
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKK 55
L A KK+K+K+K K KK+ + K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNI 422
Score = 35.3 bits (82), Expect = 0.003
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKK 55
+ K+ +KK+K+K+K K KK+ +
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHR 417
Score = 34.9 bits (81), Expect = 0.005
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K+ +KK+K+K+K K K
Sbjct: 393 KKVLAKRAEKKEKEKEKPKVK 413
Score = 34.5 bits (80), Expect = 0.006
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNP 58
+K K KK+ + K K++K +
Sbjct: 408 EKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 34.1 bits (79), Expect = 0.008
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K K+ +KK+K+K+K K KK
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKK 414
Score = 33.0 bits (76), Expect = 0.020
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K+ +KK+K+K+K K
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPK 411
Score = 33.0 bits (76), Expect = 0.020
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K+ +KK+K+K+K K
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKV 412
Score = 33.0 bits (76), Expect = 0.021
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
K KK K+ +KK+K+K+K
Sbjct: 390 KPSKKVLAKRAEKKEKEKEKPK 411
Score = 33.0 bits (76), Expect = 0.023
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K KK K+ +KK+K+K+K
Sbjct: 389 GKPSKKVLAKRAEKKEKEKEK 409
Score = 32.2 bits (74), Expect = 0.042
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKK 55
K KK K+ +KK+K+K+
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKE 408
Score = 31.5 bits (72), Expect = 0.075
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVV 60
K K KK K+ +KK+K+K P V
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKV 412
Score = 30.7 bits (70), Expect = 0.12
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K KK K+ +KK+K+
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKE 406
Score = 30.7 bits (70), Expect = 0.12
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
K KK+ + K K++K +
Sbjct: 410 PKVKKRHRDTKNIGKRRKPSGTS 432
Score = 30.3 bits (69), Expect = 0.17
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
K KK+ + K K++K +
Sbjct: 411 KVKKRHRDTKNIGKRRKPSGTSE 433
Score = 29.5 bits (67), Expect = 0.31
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
+KK K KK K+ +KK+K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEK 405
Score = 29.1 bits (66), Expect = 0.51
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKK 55
A +KK K KK K+ +KK+
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKE 404
Score = 27.6 bits (62), Expect = 1.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
KK+ + K K++K
Sbjct: 412 VKKRHRDTKNIGKRRKPSGTSEE 434
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 37.8 bits (88), Expect = 2e-04
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
EEEE EEE +E E+E+ + K + K+KKK++ K K +K P
Sbjct: 94 SDDEEEETEEESTDETEQEDPP-----------ETKTESKEKKKREVPKPKTEKEKP 139
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 37.7 bits (88), Expect = 3e-04
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
K E+EEEEEEE E EE +EEE + L K K++K+++ ++K+K+ K++
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 36.1 bits (84), Expect = 0.001
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
G +++E+EEEEEEE E EE D ++ L K+ K K++K+++ ++K+K+
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 37.8 bits (88), Expect = 4e-04
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
E +EEEEEE+EE++EEEE + +++K++KKKK KK K+
Sbjct: 34 EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 35.5 bits (82), Expect = 0.003
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
K E+E +EEEEEE+EE++E+ + ++++K++KKKK KK K+
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 32.0 bits (73), Expect = 0.050
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
K EEE+ ++EEE +EEEE+E+ KKKK KK K+ + + K P+
Sbjct: 47 KKEEEEKTTDKEEEVDEEEEKEE-----------KKKKTKKVKETTTEWELLNKTKPI 93
Score = 29.7 bits (67), Expect = 0.26
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
E+E E+E +EEEEEE+E+ K+++ ++++K++KKKK KK
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKK 76
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 37.7 bits (88), Expect = 5e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
K EEEE+E+EEEEEEEEE EE
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEP 368
Score = 35.0 bits (81), Expect = 0.004
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+ EE+E+EEEEEEEEE EE E
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPE 369
Score = 34.7 bits (80), Expect = 0.006
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
+ +E+EEEEEEEEE EE E E
Sbjct: 351 EEQEDEEEEEEEEEPEEPEPE 371
Score = 34.3 bits (79), Expect = 0.007
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
E+EEEEEEEEE EE E EE
Sbjct: 354 EDEEEEEEEEEPEEPEPEE 372
Score = 34.3 bits (79), Expect = 0.008
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHM 27
+EEEE+E+EEEEEEEEE E+
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEP 370
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+ E+E+EEEEEEEEE EE E
Sbjct: 349 EEEEQEDEEEEEEEEEPEEPEP 370
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/22 (63%), Positives = 20/22 (90%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
E+++EEEE+E+EEEEEEEE+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEE 364
Score = 33.5 bits (77), Expect = 0.016
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
+EEEEEEEEE EE E EE
Sbjct: 354 EDEEEEEEEEEPEEPEPEEG 373
Score = 33.1 bits (76), Expect = 0.019
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+++EEEE+E+EEEEEEEEE
Sbjct: 346 QKDEEEEQEDEEEEEEEEEP 365
Score = 32.7 bits (75), Expect = 0.022
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEEEEEE EE E EE L
Sbjct: 356 EEEEEEEEEPEEPEPEEGPPL 376
Score = 30.4 bits (69), Expect = 0.17
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEEEEE EE E EE L
Sbjct: 357 EEEEEEEEPEEPEPEEGPPLL 377
Score = 28.5 bits (64), Expect = 0.79
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E EEEEEEEE E +EE++
Sbjct: 168 REGEEEEEEEEVGEADEEDEG 188
Score = 28.5 bits (64), Expect = 0.88
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+GEEEEEEEE E +EE+E E+
Sbjct: 169 EGEEEEEEEEVGEADEEDEGEE 190
Score = 27.7 bits (62), Expect = 1.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHM 27
EEEEEEEE E +EE+E +
Sbjct: 170 GEEEEEEEEVGEADEEDEGEEEE 192
Score = 27.3 bits (61), Expect = 1.7
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+G + EEEEEEEEEEE E D
Sbjct: 282 RGLYQLEEEEEEEEEEEPAERD 303
Score = 26.9 bits (60), Expect = 2.7
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
EEEEEEEEEE E +E EE
Sbjct: 288 EEEEEEEEEEEPAERDELEE 307
Score = 26.6 bits (59), Expect = 3.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLH 26
G+ EEEEEE E +EE+E EEE+
Sbjct: 170 GEEEEEEEEVGEADEEDEGEEEEEE 194
Score = 26.6 bits (59), Expect = 3.5
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
EEEEEEEEEEE E +E
Sbjct: 287 LEEEEEEEEEEEPAERDEL 305
Score = 26.2 bits (58), Expect = 4.4
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EEEEEEEE E +E EE D
Sbjct: 290 EEEEEEEEEPAERDELEENPD 310
Score = 26.2 bits (58), Expect = 4.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEE 23
G + EEEEEEEEEEE E +E
Sbjct: 282 RGLYQLEEEEEEEEEEEPAERDE 304
Score = 25.8 bits (57), Expect = 6.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
E E EEEEEEEE E +E
Sbjct: 165 VELREGEEEEEEEEVGEADE 184
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 36.3 bits (84), Expect = 7e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G G +EEEEEEEE E++++ D
Sbjct: 90 GTGHTRQEEEEEEEENEKQQQSD 112
Score = 34.8 bits (80), Expect = 0.002
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+EEEEEEEE E++++ +E
Sbjct: 93 HTRQEEEEEEEENEKQQQSDEA 114
Score = 32.5 bits (74), Expect = 0.019
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
G +EEEEEEEE E++++ +E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDE 113
Score = 31.3 bits (71), Expect = 0.050
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
EEEEEEEE E++++ +E +
Sbjct: 97 EEEEEEEENEKQQQSDEAQ 115
Score = 30.2 bits (68), Expect = 0.13
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLH 26
+ EEEEEEE E++++ +E + H
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQH 119
Score = 27.5 bits (61), Expect = 1.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 12 EEEEEEEEEEEEDLHM 27
+EEEEEEE+
Sbjct: 92 GHTRQEEEEEEEENEK 107
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 37.2 bits (86), Expect = 7e-04
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
G + E EE+EEEEEEEEEEE++
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEI 244
Score = 36.8 bits (85), Expect = 0.001
Identities = 17/23 (73%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G E EE+EEEEEEEEEEEE D
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEID 245
Score = 28.4 bits (63), Expect = 0.82
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKK 44
+ E EE+EEEEEEE+ ++ + ++K++ +K
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRK 259
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 36.9 bits (86), Expect = 0.001
Identities = 10/54 (18%), Positives = 32/54 (59%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
+EE +EE+EE + E++E+D + +++ ++++++++ ++K+
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 36.4 bits (84), Expect = 0.001
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLN----YLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
++ E+E+E E E +EE + C + + K K ++++ K K +
Sbjct: 550 DDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMKMTDTSEK 609
Query: 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVA 90
++ + +I+G ++LT+ C AF A
Sbjct: 610 PLWRNVVNINGI----ILLTVAVFCHAFFA 635
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 35.4 bits (82), Expect = 0.002
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 27 MCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYL 73
+C + KK K K+ +K + KKKKKK +NP+ ++ ++F G L
Sbjct: 78 LCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQL 124
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family
is found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 35.0 bits (81), Expect = 0.002
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 9/30 (30%)
Query: 5 EEEEEEEEE---------EEEEEEEEEEDL 25
E+E +EEEE EE EEEE+ EDL
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDL 30
Score = 32.3 bits (74), Expect = 0.026
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EEE E++ ++ +EE EEEED
Sbjct: 6 EEEELEDDIDDLDEEAEEEED 26
Score = 30.4 bits (69), Expect = 0.12
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EEEE E++ ++ +EE EEE+
Sbjct: 5 DEEEELEDDIDDLDEEAEEEE 25
Score = 28.1 bits (63), Expect = 0.77
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 4 GEEEEEEEEEEEEEEEEE 21
+ ++ +EE EEEE+ E+
Sbjct: 12 DDIDDLDEEAEEEEDGED 29
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.4 bits (82), Expect = 0.003
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
+E E ++EEE E+E + EE L KKK+ K K K+ KKKKKK
Sbjct: 63 DDEPESDDEEEGEKELQREERLK--------KKKRVKTKAYKEPTKKKKKKDPTAA 110
Score = 28.1 bits (63), Expect = 1.1
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCL---------NYLAMKKKKKKKKKKKKKKKKKKKKK 55
EEE++EE E EEEEEEEE D + +K+ +++++ KKKK+ K K
Sbjct: 36 EEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAY 95
Query: 56 NNPVV 60
P
Sbjct: 96 KEPTK 100
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 35.4 bits (81), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
K +E +E+EEEEEEEEEEE E
Sbjct: 131 KEDESDEDEEEEEEEEEEEAE 151
Score = 33.9 bits (77), Expect = 0.009
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ +E+EEEEEEEEEEE E EE+
Sbjct: 134 ESDEDEEEEEEEEEEEAEVEEN 155
Score = 33.9 bits (77), Expect = 0.010
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+EEEEEEEEEEE E EE +
Sbjct: 137 EDEEEEEEEEEEEAEVEENE 156
Score = 33.5 bits (76), Expect = 0.013
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+E+EEEEEEEEEEE E E+
Sbjct: 132 EDESDEDEEEEEEEEEEEAEVEE 154
Score = 32.7 bits (74), Expect = 0.026
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL 25
E+E +E+EEEEEEEEEEE ++
Sbjct: 129 ATKEDESDEDEEEEEEEEEEEAEV 152
Score = 32.4 bits (73), Expect = 0.039
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
K +E+E +E+EEEEEEEEEE+
Sbjct: 128 KATKEDESDEDEEEEEEEEEEE 149
Score = 30.8 bits (69), Expect = 0.11
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
EEEEEEEEEEE E EE E+
Sbjct: 139 EEEEEEEEEEEAEVEENEQ 157
Score = 29.7 bits (66), Expect = 0.33
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G G+ EEE EEE EEE ED
Sbjct: 55 GDGDSSEEEGEEETSNEEENNED 77
Score = 28.9 bits (64), Expect = 0.49
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
GK +E+E +E+EEEEEEEEE+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEE 148
Score = 27.4 bits (60), Expect = 2.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLH 26
G EEE EEE EEE E+ D +
Sbjct: 57 GDSSEEEGEEETSNEEENNEDSDGN 81
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 35.5 bits (82), Expect = 0.003
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
GK EE EE EEE+++ + + N L KKK K+ K K++++ VV
Sbjct: 841 GKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVV 899
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 34.6 bits (80), Expect = 0.003
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
+ +E+ ++E E+EE +++ E+ KK+ K++KKK+KKKKKKK KK N
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGN 107
Score = 25.8 bits (57), Expect = 4.5
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLA--MKKKKKKKKKKKKKKKKKKKKK 55
++E E+EE +++ EE++ +D A KKK+KKKKKKK KK KK++K
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 34.2 bits (79), Expect = 0.003
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
EE++EEEEEEEE+EE EEE
Sbjct: 76 AAEEKKEEEEEEEEKEESEEEAA 98
Score = 33.8 bits (78), Expect = 0.004
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
EE++EEEEEEEE+EE EE+
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEA 97
Score = 30.3 bits (69), Expect = 0.092
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE++EEEEEEEE+EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEES 93
Score = 29.9 bits (68), Expect = 0.12
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
+EEEEEEEE+EE EEE L
Sbjct: 81 KEEEEEEEEKEESEEEAAAGL 101
Score = 29.2 bits (66), Expect = 0.22
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EE++EEEEEEEE+E+
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEE 92
Score = 28.8 bits (65), Expect = 0.35
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 3 KGEEEEEEEEEEEEEEEEEE 22
K EEEEEEEE+EE EEE
Sbjct: 80 KKEEEEEEEEKEESEEEAAA 99
Score = 28.0 bits (63), Expect = 0.59
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EE++EEEEEEEE++
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKE 91
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 35.1 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMK 35
++EEEEEEEEEE+E+ +++D +Y A
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAEN 204
Score = 33.2 bits (76), Expect = 0.016
Identities = 15/21 (71%), Positives = 20/21 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
+EE+E++EEEEEEEEEE+ED
Sbjct: 169 DEEDEKDEEEEEEEEEEDEDF 189
Score = 31.3 bits (71), Expect = 0.065
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ +EE+E++EEEEEEEEEED
Sbjct: 167 DVDEEDEKDEEEEEEEEEED 186
Score = 30.9 bits (70), Expect = 0.085
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+EE+E++EEEEEEEEEE++
Sbjct: 168 VDEEDEKDEEEEEEEEEEDE 187
Score = 30.5 bits (69), Expect = 0.12
Identities = 13/21 (61%), Positives = 19/21 (90%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E+ +EE+E++EEEEEEEEE+
Sbjct: 165 AEDVDEEDEKDEEEEEEEEEE 185
Score = 29.3 bits (66), Expect = 0.36
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ E E+ +EE+E++EEEEEEE+
Sbjct: 162 ELEAEDVDEEDEKDEEEEEEEE 183
Score = 27.0 bits (60), Expect = 1.9
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
K E E+ +EE+E++EEEEEE+
Sbjct: 161 KELEAEDVDEEDEKDEEEEEEE 182
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 35.3 bits (81), Expect = 0.003
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
K E E++E+ EE EEE+ EEE + KK KK KK K KK K
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEG--------GLSKKGKKLKKLKGKKNGLDKD 354
Score = 33.4 bits (76), Expect = 0.018
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
E + E E++E+ EE EE+ + L+ K KK KK K KK K
Sbjct: 307 EIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 30.7 bits (69), Expect = 0.13
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
+ E+ EE EEE+ EEE KK KK KK K KK K
Sbjct: 315 EQDEDSEESEEEKNEEEGGLS------------KKGKKLKKLKGKKNGLDKD 354
Score = 29.2 bits (65), Expect = 0.52
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+ +E++ +E ++ E+ +EE+ KKKKKK K KKK KK K
Sbjct: 218 LEGDDEDDGDESDKGGEDGDEEKS----------KKKKKKLAKNKKKLDDDKKGK 262
Score = 27.6 bits (61), Expect = 1.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
G++E++ +E ++ E+ +EE K KKKKKK K KKK K
Sbjct: 220 GDDEDDGDESDKGGEDGDEE------------KSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 26.5 bits (58), Expect = 4.1
Identities = 9/55 (16%), Positives = 27/55 (49%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
KG++ ++++ + ++ ++ D+ + + KK+K+ KK++ N
Sbjct: 345 KGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGN 399
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 35.2 bits (82), Expect = 0.003
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEEEEEEEEEEE EE+
Sbjct: 301 AEEEEEEEEEEEEEEPSEEEA 321
Score = 32.9 bits (76), Expect = 0.023
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEE E+
Sbjct: 300 AAEEEEEEEEEEEEEEPSEE 319
Score = 31.4 bits (72), Expect = 0.080
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 3 KGEEEEEEEEEEEEEEEEE 21
+ EEEEEEEEEEEE EEE
Sbjct: 302 EEEEEEEEEEEEEEPSEEE 320
Score = 30.2 bits (69), Expect = 0.20
Identities = 14/20 (70%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEE
Sbjct: 298 AAAAEEEEEEEEEEEEEEPS 317
Score = 29.8 bits (68), Expect = 0.24
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEEEEEEEE EEE L
Sbjct: 305 EEEEEEEEEEEPSEEEAAAGL 325
Score = 29.8 bits (68), Expect = 0.26
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ EEEEEEEEEEEEEE
Sbjct: 297 QAAAAEEEEEEEEEEEEEEP 316
Score = 28.7 bits (65), Expect = 0.57
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ EEEEEEEEEEEEE+
Sbjct: 296 AQAAAAEEEEEEEEEEEEEE 315
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 34.8 bits (81), Expect = 0.004
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 15 EEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
E+ +E +EE L+ +K K +KKK+K++ K K K+ P +++
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLFV 94
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 33.4 bits (77), Expect = 0.004
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL 25
EEE++EEEEEEEE++D+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDDDM 83
Score = 31.8 bits (73), Expect = 0.016
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
EEE++EEEEEEEE+D
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 31.1 bits (71), Expect = 0.036
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHM 27
EEE++EEEEEEEED M
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDDDM 83
Score = 26.8 bits (60), Expect = 1.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
EEE++EEEEEEE+
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEEE 79
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
GE+ E E+EE+EEE+++++ D
Sbjct: 54 GEDLESEDEEDEEEDDDDDMD 74
Score = 32.2 bits (74), Expect = 0.012
Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 4/24 (16%)
Query: 5 EEEEE----EEEEEEEEEEEEEED 24
EEEEE E E+EE+EEE++++D
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDD 72
Score = 30.7 bits (70), Expect = 0.043
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 6/29 (20%)
Query: 5 EEEEEEEEE------EEEEEEEEEEDLHM 27
+ E EEEEE E+EE+EEE++D M
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 29.9 bits (68), Expect = 0.069
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 6/27 (22%)
Query: 4 GEEEEEEEE------EEEEEEEEEEED 24
E EEEEE E+EE+EEE+++D
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDD 71
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 34.6 bits (80), Expect = 0.005
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
E EEEEEE EE EEE EED + +K+ ++ K++++ ++ + V+
Sbjct: 148 ELPEEEEEEPEEMEEELEED---------AADRDARKRAAEEAKEQEELRRRSQVI 194
Score = 26.9 bits (60), Expect = 2.8
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+ + E E E EEEEEE E++ L A + +K+ ++ K++++ ++++
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRS 191
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 34.5 bits (80), Expect = 0.005
Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 9/55 (16%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
K +++EEEEEEE+E++E+ K++++++ +++K+++++KKKK
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEE---------EKEEEEEEAEEEKEEEEEKKKK 475
Score = 30.3 bits (69), Expect = 0.18
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
K ++ E+ E++ EEE++E KKKK KKK+++++++K+K
Sbjct: 410 KKIKKIVEKAEKKREEEKKE------------KKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 29.1 bits (66), Expect = 0.44
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+ +L KK KK KK +K +KK+++
Sbjct: 399 IEFLTGSKKATKKIKKIVEKAEKKREE 425
Score = 28.3 bits (64), Expect = 0.84
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
G + ++ ++ E+ E++ EE+ KK+KKKK KKK+++++++
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEE----------KKEKKKKAFAGKKKEEEEEEEKEKK 451
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of the
aligned region. The family used to be known as DUF6.
Length = 126
Score = 33.7 bits (78), Expect = 0.006
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 49 KKKKKKKNNPVVYIYALLFSI-SGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFV 107
+K + + L + LG + +K A A +T+ T++LS +
Sbjct: 41 LRKPFALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVL 100
Query: 108 FFAKPFTF 115
+ T
Sbjct: 101 LLGEKLTL 108
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 33.8 bits (78), Expect = 0.007
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
E+EEEE++EE+++E+E EE+
Sbjct: 119 EDEEEEDDEEDDDEDESEEEES 140
Score = 33.5 bits (77), Expect = 0.009
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+EE+EEEE++EE+++E+E +
Sbjct: 113 ESDDDEEDEEEEDDEEDDDEDESE 136
Score = 33.5 bits (77), Expect = 0.009
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
++EE+EEEE++EE+++E+E
Sbjct: 116 DDEEDEEEEDDEEDDDEDESEE 137
Score = 32.3 bits (74), Expect = 0.023
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+ E +++EE+EEEE++EE++++
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDE 132
Score = 31.9 bits (73), Expect = 0.036
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+ E+E +++EE+EEEE++EE+D
Sbjct: 107 VASEEDESDDDEEDEEEEDDEEDD 130
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 32.8 bits (75), Expect = 0.010
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLN-YLAMKKKKKKKKKKKKKKKKKK 52
EEE +E EEEE EEEED M L Y ++K+K K +K K+
Sbjct: 54 QAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKRKALPALKVRKAKE 105
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 33.9 bits (78), Expect = 0.012
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHM 27
EEEEEEEEEEEEEEE ++ M
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMM 426
Score = 33.5 bits (77), Expect = 0.015
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKK--------KKKKKKKKKKKKKKKKKKK 55
EEEEEEEEEEEEEEE E + M + + K K +K KKK++KK
Sbjct: 405 EEEEEEEEEEEEEEEPVAEVMMMPAPEMQLPASGGIKIILKNAKIYAEKVIIKKKEEKK 463
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 33.6 bits (78), Expect = 0.012
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E EE +++E+EEEE+ + A + + +K +K K K+ KK
Sbjct: 183 AHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKK 233
Score = 29.0 bits (66), Expect = 0.56
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
+EEEEE+E ++ +E E L K+ KK +K ++KK + + +
Sbjct: 197 DEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQH 249
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family. This family
includes transporters with a specificity for triose
phosphate.
Length = 149
Score = 32.9 bits (76), Expect = 0.012
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 51 KKKKKNNPVVYIYALLF--SISGYLGVQV-VLTLVKTCGAFVAVTVTTCRKAVTIVLSFV 107
K + LL + +L L +T +V T R V IVLS +
Sbjct: 65 LKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKR-VVVIVLSVI 123
Query: 108 FFAKPFTFQ 116
F P TF
Sbjct: 124 IFGDPVTFL 132
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 33.8 bits (78), Expect = 0.012
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNP 58
K+++KK +K+KKKKK+KKK K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRK 409
Score = 33.4 bits (77), Expect = 0.014
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K+KKKKK+KKK KK+KKK +K
Sbjct: 394 KRKKKKKRKKKGKKRKKKGRK 414
Score = 33.0 bits (76), Expect = 0.018
Identities = 14/22 (63%), Positives = 20/22 (90%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
KKK+++KK +K+KKKKK+KKK
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKG 405
Score = 33.0 bits (76), Expect = 0.020
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
+K+KKKKK+KKK KK+KKK +
Sbjct: 393 QKRKKKKKRKKKGKKRKKKGR 413
Score = 33.0 bits (76), Expect = 0.020
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K +K+KKKKK+KKK KK+KKK
Sbjct: 391 KPQKRKKKKKRKKKGKKRKKK 411
Score = 32.6 bits (75), Expect = 0.024
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
KK+++KK +K+KKKKK+KKK
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKK 407
Score = 32.6 bits (75), Expect = 0.027
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK +K+KKKKK+KKK KK+KK
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKK 410
Score = 32.2 bits (74), Expect = 0.034
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNP 58
KKK+++KK +K+KKKKK+KK
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGK 406
Score = 32.2 bits (74), Expect = 0.037
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
+K+KKKKK+KKK KK+KKK
Sbjct: 392 PQKRKKKKKRKKKGKKRKKKG 412
Score = 31.9 bits (73), Expect = 0.048
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
+KK +K+KKKKK+KKK KK+K
Sbjct: 389 EKKPQKRKKKKKRKKKGKKRKK 410
Score = 29.2 bits (66), Expect = 0.42
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K KKK+++KK +K+KKKKK+
Sbjct: 381 KPPKKKREEKKPQKRKKKKKR 401
Score = 28.0 bits (63), Expect = 0.96
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 36 KKKKKKKKKKKKKKKKKKKKNNP 58
K KKK+++KK +K+KKKKK
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKK 403
Score = 25.3 bits (56), Expect = 8.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K K KKK+++KK +K+KKK
Sbjct: 378 KYPKPPKKKREEKKPQKRKKK 398
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 33.7 bits (77), Expect = 0.013
Identities = 13/59 (22%), Positives = 16/59 (27%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
G E E E +E K K KK KKK + P +
Sbjct: 125 GTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGI 183
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 33.6 bits (77), Expect = 0.014
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMK 35
EEEEEEEEEEEEE E E + + +
Sbjct: 402 AEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVP 433
Score = 31.7 bits (72), Expect = 0.067
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHM 27
+ EEEEEEEEEEEEE E + M
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPM 423
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 32.4 bits (73), Expect = 0.015
Identities = 9/20 (45%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEE++++E+EE+++E+++ED
Sbjct: 18 EEEDDDDEDEEDDDEDDDED 37
Score = 31.7 bits (71), Expect = 0.025
Identities = 12/40 (30%), Positives = 27/40 (67%), Gaps = 7/40 (17%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHM-------CLNYLAMKKK 37
EE++++E+EE+++E+++E+D + + Y AM K+
Sbjct: 19 EEDDDDEDEEDDDEDDDEDDDEVPVPSFGEAMAYFAMVKR 58
Score = 30.9 bits (69), Expect = 0.053
Identities = 8/20 (40%), Positives = 19/20 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ +EEE++++E+EE+++E+D
Sbjct: 15 DSDEEEDDDDEDEEDDDEDD 34
Score = 30.9 bits (69), Expect = 0.061
Identities = 7/20 (35%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+EEE++++E+EE+++E++++
Sbjct: 17 DEEEDDDDEDEEDDDEDDDE 36
Score = 29.7 bits (66), Expect = 0.14
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E+ + + +EEE++++E+EED
Sbjct: 9 EEDSDSDSDEEEDDDDEDEED 29
Score = 29.4 bits (65), Expect = 0.18
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ + + +EEE++++E+EE++D
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDD 31
Score = 29.4 bits (65), Expect = 0.20
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+GEE+ + + +EEE++++E+E+
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEE 28
Score = 28.2 bits (62), Expect = 0.60
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G+ + + + +EEE++++E+EE+D
Sbjct: 8 GEEDSDSDSDEEEDDDDEDEEDD 30
Score = 27.0 bits (59), Expect = 1.2
Identities = 6/20 (30%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ + +EEE++++E+EE++++
Sbjct: 13 DSDSDEEEDDDDEDEEDDDE 32
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 32.3 bits (74), Expect = 0.017
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEEEEEEEEEEEE EEE +
Sbjct: 77 EEEEEEEEEEEEEEESEEEAM 97
Score = 31.9 bits (73), Expect = 0.020
Identities = 18/20 (90%), Positives = 19/20 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEE EE+
Sbjct: 76 EEEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.046
Identities = 17/22 (77%), Positives = 17/22 (77%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
EEEEEEEEEEEEEEEE E
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESE 93
Score = 30.4 bits (69), Expect = 0.069
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEES 92
Score = 30.4 bits (69), Expect = 0.069
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEEEE +
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESE 93
Score = 28.5 bits (64), Expect = 0.39
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEE+
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEE 90
Score = 28.5 bits (64), Expect = 0.40
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
+ EEEEEEEEEEEE EEE L
Sbjct: 78 EEEEEEEEEEEEEESEEEAMAGL 100
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic
region found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 32.1 bits (73), Expect = 0.020
Identities = 14/51 (27%), Positives = 33/51 (64%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
EE+ +EEEE EEEE++EE + ++ +++ +++ +++K+ +K+
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKR 57
Score = 31.7 bits (72), Expect = 0.027
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
EEE EEEE++EE + E D+ +++ +++ +++K+ +K++++
Sbjct: 11 DEEEESEEEEDDEEIRRKAERDVD---RGRRSPRRRTRRRSRRRKRSRKRRRRRRD 63
Score = 27.8 bits (62), Expect = 0.59
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
EE+ +EEEE EEEE++E+ ++K ++ + ++ +++ +
Sbjct: 5 ALEEDLDEEEESEEEEDDEE----------IRRKAERDVDRGRRSPRRRTRR 46
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 32.9 bits (75), Expect = 0.020
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNP 58
KKK + K++KKKKK+KKKKK
Sbjct: 146 KKKHEDDKERKKKKKEKKKKKKRH 169
Score = 28.6 bits (64), Expect = 0.60
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 36 KKKKKKKKKKKKKKKKKKKKNNPV 59
K++KKKKK+KKKKKK+ ++ V
Sbjct: 153 KERKKKKKEKKKKKKRHSPEHPGV 176
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 33.3 bits (76), Expect = 0.021
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 28 CLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYAL 65
C +KKKKKKK K+KKKKK ++ I+AL
Sbjct: 677 CCLCCGSRKKKKKKKSKEKKKKKNREASKQ----IHAL 710
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 33.1 bits (76), Expect = 0.021
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E E + ++E+E EED + K + K + K+KK ++
Sbjct: 244 ETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEEL 294
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
E E E + ++E+E + K+ K + K + K+KK
Sbjct: 241 VEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 33.2 bits (76), Expect = 0.021
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E ++EEEE+EEEEEEE+ED
Sbjct: 385 NTERDDEEEEDEEEEEEEDED 405
Score = 32.8 bits (75), Expect = 0.029
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
++EEEE+EEEEEEE+E+E
Sbjct: 385 NTERDDEEEEDEEEEEEEDEDEG 407
Score = 32.0 bits (73), Expect = 0.042
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
E ++EEEE+EEEEEEE+E++
Sbjct: 387 ERDDEEEEDEEEEEEEDEDEGP 408
Score = 32.0 bits (73), Expect = 0.055
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+ E ++EEEE+EEEEEEE++
Sbjct: 381 IEDANTERDDEEEEDEEEEEEEDE 404
Score = 31.6 bits (72), Expect = 0.059
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 2 GKGEEEEEEEEEEEEEEEEEE 22
EEEE+EEEEEEE+E+E
Sbjct: 388 RDDEEEEDEEEEEEEDEDEGP 408
Score = 30.9 bits (70), Expect = 0.10
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
EEE+EEEEEEE+E+E ++
Sbjct: 392 EEEDEEEEEEEDEDEGPSKEHS 413
Score = 29.3 bits (66), Expect = 0.46
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
E+EEEEEEE+E+E +E
Sbjct: 393 EEDEEEEEEEDEDEGPSKEH 412
Score = 27.8 bits (62), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+ EEEEEEE+E+E +E +D
Sbjct: 392 EEEDEEEEEEEDEDEGPSKEHSDD 415
Score = 25.5 bits (56), Expect = 9.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
EEEEEE+E+E +E +++
Sbjct: 397 EEEEEEDEDEGPSKEHSDDEEF 418
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 32.0 bits (73), Expect = 0.022
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHM 27
E +E EEEE+EEE EEE D M
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDDDM 103
Score = 30.8 bits (70), Expect = 0.055
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+E EEEE+EEE EEE ++D
Sbjct: 80 AAEADEAEEEEKEEEAEEESDDD 102
Score = 30.1 bits (68), Expect = 0.098
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
+E EEEE+EEE EEE +++ L
Sbjct: 83 ADEAEEEEKEEEAEEESDDDML 104
Score = 29.7 bits (67), Expect = 0.16
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ E +E EEEE+EEE EEE
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEES 99
Score = 27.4 bits (61), Expect = 1.00
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
G E E +E EEEE+EEE +
Sbjct: 75 AGAEAAAEADEAEEEEKEEEAE 96
Score = 27.0 bits (60), Expect = 1.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
G E +E EEEE+EEE EE
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEE 97
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.8 bits (75), Expect = 0.023
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
+++ EEE ++E E E + + K+K K ++ K+K++K+ +++
Sbjct: 246 DDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELERE 295
Score = 32.8 bits (75), Expect = 0.023
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
EE +++ EEE ++E E + + K+K K ++ K+K++K+
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKEL 292
Score = 25.8 bits (57), Expect = 6.6
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 5 EEEEEEEEEEEEEEEEEEED----LHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E E EE +++ EEE +D Y + K + K+K K ++ K+K++K
Sbjct: 236 EMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRK 290
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 32.3 bits (74), Expect = 0.025
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
G+ ++E+EE + E +E M +++KK++++K+K++ +K ++ NP +
Sbjct: 51 FSDGKYDDEDEEADRIYESIDER----------MDERRKKRREQKEKEEIEKYREENPKI 100
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 32.7 bits (75), Expect = 0.026
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
E E E E E +E + + K K K K K KK +++ K++ PV
Sbjct: 73 EPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPV 124
Score = 29.7 bits (67), Expect = 0.24
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E E E E E E ++ + + K K K K K K KK +++ K
Sbjct: 69 EPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPK 118
Score = 26.2 bits (58), Expect = 4.3
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKK---KKKKKKKKKKKKKKKKNNP 58
E E E E E +E + K K K KK +++ K++ K + P
Sbjct: 73 EPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRP 128
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 32.6 bits (74), Expect = 0.028
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
K +E+ +EE+++++E+ +EE K+ K+K+K+K+KK ++ + +
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Score = 26.4 bits (58), Expect = 4.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
K + +E+E+E+E++ EE D ++ K + KK KKK KKK+
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Score = 26.4 bits (58), Expect = 4.8
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
K + +EE+++++E+ +EE ++ K++ K+K+ K+K+K+K+KK P
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDR--------KPKEEAKEKRPPKEKEKEKEKKVEEP 157
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 32.7 bits (74), Expect = 0.029
Identities = 9/21 (42%), Positives = 20/21 (95%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
++E+E+E++++EE++EEEE+
Sbjct: 155 DDDEDEDEDDDDEEDDEEEEE 175
Score = 31.9 bits (72), Expect = 0.052
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
+E++++EE++EEEEEEEEE
Sbjct: 160 EDEDDDDEEDDEEEEEEEEE 179
Score = 31.9 bits (72), Expect = 0.058
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
E+E+E++++EE++EEEEEE+
Sbjct: 155 DDDEDEDEDDDDEEDDEEEEEEE 177
Score = 31.2 bits (70), Expect = 0.11
Identities = 12/22 (54%), Positives = 21/22 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
E+E++++EE++EEEEEEEE++
Sbjct: 160 EDEDDDDEEDDEEEEEEEEEIK 181
Score = 30.8 bits (69), Expect = 0.16
Identities = 7/22 (31%), Positives = 20/22 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
++++E+E+E++++EE++EE+
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEE 175
Score = 30.8 bits (69), Expect = 0.16
Identities = 11/20 (55%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+E+E++++EE++EEEEEEE+
Sbjct: 159 DEDEDDDDEEDDEEEEEEEE 178
Score = 28.5 bits (63), Expect = 1.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 2 GKGEEEEEEEEEEEEEEEEE 21
++++EE++EEEEEEEEE
Sbjct: 160 EDEDDDDEEDDEEEEEEEEE 179
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 32.0 bits (73), Expect = 0.032
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNNPV 59
+K+K K+KK+KKKKKKKKKKK +
Sbjct: 104 VLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 30.4 bits (69), Expect = 0.10
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
K+KKKKKKKKKKK KK KK
Sbjct: 113 KQKKKKKKKKKKKTSKKAAKKK 134
Score = 30.4 bits (69), Expect = 0.10
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKK 55
L K K+KK+KKKKKKKKKKK K
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSK 128
Score = 30.0 bits (68), Expect = 0.13
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNN 57
KK+KKKKKKKKKKK KK K
Sbjct: 111 QKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 29.7 bits (67), Expect = 0.21
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKK 55
A +KK+KKKKKKKKKKK KK
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAA 131
Score = 29.3 bits (66), Expect = 0.25
Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KKKKKKKKKKK KK KKKK
Sbjct: 115 KKKKKKKKKKKTSKKAAKKKK 135
Score = 28.9 bits (65), Expect = 0.41
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 28 CLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+ + +K K+KK+KKKKKKKKKKK
Sbjct: 100 IVKQVLKEKAKQKKQKKKKKKKKKKKTS 127
Score = 27.3 bits (61), Expect = 1.3
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 34 MKKKKKKKKKKKKKKKKKKK 53
KKKKKKKKK KK KKKK
Sbjct: 116 KKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 32.5 bits (75), Expect = 0.033
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKN 56
L ++K++ KKKKK+KK KK + +K
Sbjct: 730 LDLEKRRLKKKKKRKKVKKWEVEKI 754
Score = 29.4 bits (67), Expect = 0.43
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 36 KKKKKKKKKKKKKKKKKKKKNN 57
+K++ KKKKK+KK KK + +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 29.0 bits (66), Expect = 0.49
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNNP 58
L + +K++ KKKKK+KK KK +
Sbjct: 728 LWLDLEKRRLKKKKKRKKVKKWEVEKI 754
Score = 29.0 bits (66), Expect = 0.54
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKKK 54
K++ KKKKK+KK KK + +K
Sbjct: 730 LDLEKRRLKKKKKRKKVKKWEVEK 753
Score = 26.3 bits (59), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 39 KKKKKKKKKKKKKKKKKNNPVVY 61
+K++ KKKKK+KK KK +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 32.3 bits (74), Expect = 0.034
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
++ +E ++++ E EED+ + K+K K++ KKKK K+ K K VV
Sbjct: 224 DKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVV 276
Score = 27.7 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+E ++++ E EE+ E E KKKK K+ K K KK K
Sbjct: 228 KESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKG 279
Score = 27.3 bits (61), Expect = 2.1
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
E E E++ + +EE + KK K+ K K KK K K
Sbjct: 242 EAAESRAEKKRKSKEEIKK----------KKPKESKGVKALKKVVAKGMKK 282
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
+KK +K K K +KKK KK++ P +++
Sbjct: 74 AEKKAEKAKAKAEKKKAKKEEPKPRLFV 101
Score = 29.8 bits (68), Expect = 0.17
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 20 EEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
EE +DL L + KK+ K +K +KK +K K K
Sbjct: 49 EEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEK 87
Score = 29.0 bits (66), Expect = 0.39
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
K +K +KK +K K K +KK
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKK 89
Score = 28.3 bits (64), Expect = 0.76
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 36 KKKKKKKKKKKKKKKKKKKKNNP 58
K +K +KK +K K K +K
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKA 90
Score = 25.2 bits (56), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKK 55
+K K K +KKK KK++ K +
Sbjct: 75 EKKAEKAKAKAEKKKAKKEEPKPR 98
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 31.9 bits (73), Expect = 0.040
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 14/59 (23%)
Query: 4 GEEEEE------EEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
E+E++ +EEE+EE+EEE+ + A K K KK K K ++K+K K++
Sbjct: 26 DEDEDDDVKDSWDEEEDEEKEEEKAKV--------AAKAKAKKALKAKIEEKEKAKREK 76
Score = 25.4 bits (56), Expect = 8.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
LN L +K K +K K KKKK K K
Sbjct: 187 LNVLINEKLKAEKAAKGGKKKKGKAKAK 214
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 31.4 bits (71), Expect = 0.040
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
K KKKKKK KK KK KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 0.79
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 38 KKKKKKKKKKKKKKKKKKNN 57
K KKKKKK KK KK KK +
Sbjct: 99 KPKKKKKKSKKTKKPKKSSK 118
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 32.2 bits (74), Expect = 0.042
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
EE EEE EE EEE ++ +KK +KK KK KK K ++
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
Score = 31.1 bits (71), Expect = 0.081
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
EE EEE EE EEE +E E +KK KK KK K ++ +
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAE 114
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 32.0 bits (72), Expect = 0.045
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 24/110 (21%)
Query: 4 GEEEEEEE--------EEEEEEEEEEEEDLHMCLN--------------YLAMKKKKKKK 41
GEE EEE+ E EEE+EEEE E +N A+KK +
Sbjct: 83 GEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDAEGLSGLAREACDALKKALLRH 142
Query: 42 KKKKKKKKKKK-KKKNNPVVYIYALLF-SISGYLGVQVVLTLVKTCGAFV 89
+ +++++ + ++ N P +A +F ++ G QV ++L+ A V
Sbjct: 143 RFLWQRRRQARCEQHNGPQQSHHAAVFCRVAEKRGFQVFISLLALLSACV 192
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 31.8 bits (73), Expect = 0.046
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKK 49
EEE+ +EE EE + + DL + +++K ++++ ++K+
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIP----PQREKLEEERARRKR 218
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 30.8 bits (70), Expect = 0.049
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDL 25
E ++EE++EEEEEE ++D+
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDDDM 98
Score = 29.2 bits (66), Expect = 0.24
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHM 27
E ++EE++EEEEEE D M
Sbjct: 73 AAAAAAAEAKKEEKKEEEEEESDDDM 98
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 31.8 bits (72), Expect = 0.052
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ EEEEEEEEEEEE+E EEEE
Sbjct: 445 VEEEEEEEEEEEEEEQESEEEEG 467
Score = 31.8 bits (72), Expect = 0.061
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ EE+E EEEE E+EEEEEE +
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVE 477
Score = 31.4 bits (71), Expect = 0.070
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEE+E EEEE ED
Sbjct: 450 EEEEEEEEEEQESEEEEGED 469
Score = 31.4 bits (71), Expect = 0.078
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEE+E EEEE E+EEE+
Sbjct: 454 EEEEEEQESEEEEGEDEEEE 473
Score = 31.4 bits (71), Expect = 0.080
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+E EEEE E+EEEEEE E
Sbjct: 459 EQESEEEEGEDEEEEEEVEA 478
Score = 31.0 bits (70), Expect = 0.093
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEEEEE+E EEEE E+E+
Sbjct: 452 EEEEEEEEQESEEEEGEDEEE 472
Score = 31.0 bits (70), Expect = 0.095
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+E EEEE EEEEEEEEEE+
Sbjct: 435 ASQESEEEESVEEEEEEEEEEE 456
Score = 31.0 bits (70), Expect = 0.10
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEE+E EEEE E++
Sbjct: 451 EEEEEEEEEQESEEEEGEDE 470
Score = 31.0 bits (70), Expect = 0.11
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+E EEEE E+EEEEEE E D
Sbjct: 460 QESEEEEGEDEEEEEEVEAD 479
Score = 31.0 bits (70), Expect = 0.11
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEE+E EEEE +
Sbjct: 449 EEEEEEEEEEEQESEEEEGE 468
Score = 30.7 bits (69), Expect = 0.13
Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
EEEEEEEEEEEEEE+E EE
Sbjct: 444 SVEEEEEEEEEEEEEEQESEE 464
Score = 30.3 bits (68), Expect = 0.21
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEE+E EEEE E+EEEE+
Sbjct: 455 EEEEEQESEEEEGEDEEEEEE 475
Score = 29.9 bits (67), Expect = 0.23
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+ EE EEEEEEEEEEEEEE+
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQ 460
Score = 29.1 bits (65), Expect = 0.48
Identities = 17/22 (77%), Positives = 17/22 (77%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
EEE EEEEEEEEEEEEEE
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQE 461
Score = 28.7 bits (64), Expect = 0.65
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEEEEEEEEEE+E +
Sbjct: 444 SVEEEEEEEEEEEEEEQESE 463
Score = 28.7 bits (64), Expect = 0.70
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
E E+EEEEEE E + EE++
Sbjct: 465 EEGEDEEEEEEVEADNGSEEEM 486
Score = 28.7 bits (64), Expect = 0.73
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
+ EEEEEEEEEEEEEE+E E
Sbjct: 443 ESVEEEEEEEEEEEEEEQESE 463
Score = 28.3 bits (63), Expect = 0.92
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+GE+EEEEEE E + EEE +
Sbjct: 465 EEGEDEEEEEEVEADNGSEEEME 487
Score = 28.0 bits (62), Expect = 1.3
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+ EEEE EEEEEEEEEEEE
Sbjct: 436 SQESEEEESVEEEEEEEEEEEE 457
Score = 28.0 bits (62), Expect = 1.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMC 28
+E EEEE EEEEEEEE+
Sbjct: 437 QESEEEESVEEEEEEEEEEEEE 458
Score = 27.6 bits (61), Expect = 1.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHM 27
EEE E+EEEEEE E + + M
Sbjct: 464 EEEGEDEEEEEEVEADNGSEEEM 486
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 31.4 bits (72), Expect = 0.052
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
L KKK KK KK+K+K++K+ +K +
Sbjct: 11 LVDKKKAKKAKKEKRKQRKQARKGADDGD 39
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 32.0 bits (73), Expect = 0.053
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
K + +++ +++ ++ +++ +D L L + ++ + K+ KKKKKKKKKK
Sbjct: 14 KQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKK 68
Score = 28.9 bits (65), Expect = 0.53
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
K + ++++ E E +E + K+ KKKKKKKKKKKKK
Sbjct: 30 KKDVDDDDAFLAELISENQEAE----------NKQNNKKKKKKKKKKKKKNLGEA 74
Score = 27.4 bits (61), Expect = 2.0
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
K ++++ E E +E E+ KKKKKKKKKKKK + + V
Sbjct: 31 KDVDDDDAFLAELISENQEAENKQ-----NNKKKKKKKKKKKKKNLGEAYDLAYDLPVVW 85
Query: 63 Y 63
Sbjct: 86 S 86
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 31.7 bits (73), Expect = 0.058
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKKKK 55
YLA K KK K +K K+
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKTKQ 847
Score = 28.6 bits (65), Expect = 0.83
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K KK K +K K++
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQY 849
Score = 28.2 bits (64), Expect = 1.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K KK K +K K++
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYV 850
Score = 27.8 bits (63), Expect = 1.2
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKKKK 55
+ K KK K +K
Sbjct: 821 LRYLADAPAKDPAGKKAAVKFSRKT 845
Score = 27.8 bits (63), Expect = 1.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K +K K++ +K
Sbjct: 835 KKAAVKFSRKTKQQYVASEKD 855
Score = 27.8 bits (63), Expect = 1.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
KK K +K K++ +K+
Sbjct: 834 GKKAAVKFSRKTKQQYVASEKD 855
Score = 27.4 bits (62), Expect = 1.6
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K +K K++ +K K
Sbjct: 838 AVKFSRKTKQQYVASEKDGKA 858
Score = 27.4 bits (62), Expect = 1.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKK 54
A K +K K++ +K K
Sbjct: 837 AAVKFSRKTKQQYVASEKDGKA 858
Score = 27.4 bits (62), Expect = 1.9
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
K KK K +K
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKT 845
Score = 27.4 bits (62), Expect = 2.0
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKK 55
L LA K +K + K KK
Sbjct: 811 LELLAEKPEKLRYLADAPAKDPAGKKA 837
Score = 27.1 bits (61), Expect = 2.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K +K K++ +K K
Sbjct: 837 AAVKFSRKTKQQYVASEKDGK 857
Score = 26.7 bits (60), Expect = 2.9
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K +K K++
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVA 851
Score = 26.7 bits (60), Expect = 3.0
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K +K K++ +
Sbjct: 833 AGKKAAVKFSRKTKQQYVASE 853
Score = 26.7 bits (60), Expect = 3.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K K +K K++ +K
Sbjct: 836 KAAVKFSRKTKQQYVASEKDG 856
Score = 26.3 bits (59), Expect = 4.7
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKK 55
K + K KK K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVK 840
Score = 26.3 bits (59), Expect = 4.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K +K K++
Sbjct: 832 PAGKKAAVKFSRKTKQQYVAS 852
Score = 25.5 bits (57), Expect = 7.1
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
K KK K + Y+
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKTKQQYV 850
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 31.9 bits (73), Expect = 0.059
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 10/47 (21%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKK 51
EE+EE+E+ ++E++EEEEE+ +K+KKKKK + + +
Sbjct: 355 EEDEEDEDSDDEDDEEEEEE----------EKEKKKKKSAESTRSEL 391
Score = 31.1 bits (71), Expect = 0.089
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 10/49 (20%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
EEE+EE+E+ ++E++EEEE+ ++K+KKKKK + + +
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEE----------EEKEKKKKKSAESTRSEL 391
Score = 30.0 bits (68), Expect = 0.24
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 10/50 (20%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
+EEE+EE+E+ ++E++EE+ ++++K+KKKKK + + +
Sbjct: 352 SDEEEDEEDEDSDDEDDEEE----------EEEEKEKKKKKSAESTRSEL 391
Score = 29.2 bits (66), Expect = 0.43
Identities = 13/23 (56%), Positives = 21/23 (91%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G+GEE+EEEEE+ ++E+EE++D
Sbjct: 317 GQGEEDEEEEEDGVDDEDEEDDD 339
Score = 28.0 bits (63), Expect = 1.1
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL 25
G+ +EEEEE+ ++E+EE++++DL
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDL 342
Score = 26.9 bits (60), Expect = 2.8
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
G G+ EE+EEEEE+ ++E+EED
Sbjct: 314 FGLGQGEEDEEEEEDGVDDEDEED 337
Score = 26.5 bits (59), Expect = 4.4
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 1 MGKGEEEEEEEEEEEEEEEEE---------EEDLHMCLNYLAMKKKKKKKKKKKKKKKKK 51
G +E+EE+++++ EEEEE+ EED +++++K+KKKKK +
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAEST 387
Query: 52 KKKK 55
+ +
Sbjct: 388 RSEL 391
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 30.9 bits (70), Expect = 0.060
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
+ +EE+E EE EE DL + +K++++K++ +KKK K N + +
Sbjct: 60 PYKTDEEDEAEERFLNEERYRDLIKND-FEEAEKEEEEKRELAQKKKSKGGY--NAIGFS 116
Query: 63 YA 64
Y
Sbjct: 117 YG 118
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 31.7 bits (72), Expect = 0.067
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
EE E + +EE+ ++EE + KK+K++ + K+K++K ++KK
Sbjct: 392 TDASEEAEAKAKEEKLKQEENE----------KKQKEQADEDKEKRQKDERKK 434
Score = 31.3 bits (71), Expect = 0.085
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
GE ++E + EE E + +EE L N K++ + K+K++K ++KK
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 29.4 bits (66), Expect = 0.33
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
K E ++E + EE E + +E+ L ++ +KK+K++ + K+K++K
Sbjct: 382 TKKLGEVKDETDASEEAEAKAKEE------KLKQEENEKKQKEQADEDKEKRQK 429
Score = 29.4 bits (66), Expect = 0.35
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
G+ ++E + EE E + +EE+ +KK+K++ + K+K++K ++K
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQE------ENEKKQKEQADEDKEKRQKDERK 433
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 31.5 bits (71), Expect = 0.070
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
G+E EEE EEE+++EE+++D
Sbjct: 41 LGKEAEEEAMEEEDDDEEDDDD 62
Score = 30.0 bits (67), Expect = 0.25
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+GK EEE EEE+++EE+++++D
Sbjct: 41 LGKEAEEEAMEEEDDDEEDDDDDD 64
Score = 29.6 bits (66), Expect = 0.34
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKK 49
E E+++ + +E+ L+ MKK+ +K K+ ++
Sbjct: 8 SELEDDDWVRGSLDYKEKLTLNDT-----MKKENAIRKLGKEAEE 47
Score = 28.8 bits (64), Expect = 0.59
Identities = 9/22 (40%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ EEE EEE+++EE++++++D
Sbjct: 44 EAEEEAMEEEDDDEEDDDDDDD 65
Score = 28.4 bits (63), Expect = 0.87
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 17 EEEEEEEDLHMCLNY-----LAMKKKKKKKKKKKKKKKKK 51
E E+++ + L+Y L KK+ +K K+ ++
Sbjct: 8 SELEDDDWVRGSLDYKEKLTLNDTMKKENAIRKLGKEAEE 47
Score = 26.9 bits (59), Expect = 2.6
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHM 27
EE EEE+++EE++++++++
Sbjct: 47 EEAMEEEDDDEEDDDDDDDEDED 69
Score = 26.5 bits (58), Expect = 3.4
Identities = 8/21 (38%), Positives = 19/21 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEE+++EE+++++++E+ED
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDD 70
Score = 26.5 bits (58), Expect = 3.6
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ E EEE+++EE+++++++ED
Sbjct: 46 EEEAMEEEDDDEEDDDDDDDED 67
Score = 26.5 bits (58), Expect = 3.7
Identities = 7/20 (35%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE+++EE+++++++E+E++D
Sbjct: 52 EEDDDEEDDDDDDDEDEDDD 71
Score = 25.7 bits (56), Expect = 6.1
Identities = 6/20 (30%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+++EE+++++++E+E+++D
Sbjct: 53 EDDDEEDDDDDDDEDEDDDD 72
Score = 25.7 bits (56), Expect = 6.3
Identities = 6/20 (30%), Positives = 20/20 (100%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
++E+E++++++++E++E+ED
Sbjct: 64 DDEDEDDDDDDDDEDDEDED 83
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 30.3 bits (69), Expect = 0.070
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 9 EEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
EE EE++E+ + + KKKKKKK KKK K+ +KK
Sbjct: 16 LGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK 61
Score = 29.6 bits (67), Expect = 0.13
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
G GEE EE++E+ + + + +KKKKKKK KKK K+ +KK
Sbjct: 15 GLGEEGEEDDEQIDASKVRRISQRNR-------RKKKKKKKLKKKSKEWILRKK 61
Score = 26.1 bits (58), Expect = 2.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 14/56 (25%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+ G EE EE++E+ + + ++ ++ ++KKKKKKK KKK+
Sbjct: 12 LPNGLGEEGEEDDEQIDASK--------------VRRISQRNRRKKKKKKKLKKKS 53
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.3 bits (71), Expect = 0.073
Identities = 18/55 (32%), Positives = 21/55 (38%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
E EE+ + E E E +KK KK K K K K K K K P
Sbjct: 60 PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114
Score = 27.1 bits (60), Expect = 2.3
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
+ EE+ + E E E K K +KK KK K K K K K V
Sbjct: 61 EPPEEQPKPPTEPETPPEPTPPKPK------EKPKPEKKPKKPKPKPKPKPKPKPKVK 112
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 29.9 bits (68), Expect = 0.073
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 28 CLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYAL 65
LN + KKKK KK KK +KKKKN + I ++
Sbjct: 22 GLNNNVVAKKKKLKKLKKIDDDLEKKKKNKKKIIISSI 59
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 31.1 bits (71), Expect = 0.074
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E+ E EEEE+ +EEE E L + + K+K K+ +K++ ++ + +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 30.4 bits (69), Expect = 0.13
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
E+ E EEEE+ +EEE + + ++ + K+K K+ +K++ ++ ++
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
Score = 28.1 bits (63), Expect = 0.80
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
E+ E EEEE+ +EEE E ++ K + ++ + K+K K+ +K
Sbjct: 120 EQLEREEEEKRDEEERE----------RLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 28.1 bits (63), Expect = 0.86
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
+ E EEEE+ +EEE E + + K+K K+ +K++ ++ + + N
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAANA 173
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.6 bits (72), Expect = 0.078
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
EE EE+EE EE+E ++ + K +K K KKK+KKKKK +
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADK 1188
Score = 31.6 bits (72), Expect = 0.079
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
EE EE+EE EE+E +E+ L K K K +K K KKK+KKKK +
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKS------KTKGKASKLRKPKLKKKEKKKKKSSAD 1187
Score = 28.9 bits (65), Expect = 0.58
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
EE+EE EE+E +E+ + K K KKK+KKKKK K KK + V
Sbjct: 1142 EEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 27.3 bits (61), Expect = 2.1
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
EE EE+E +E+ + + + L +KKK+KKKKK K KK N
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS 1198
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 31.1 bits (71), Expect = 0.087
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYL 73
L Y+ +KKK+KK+KKK + + ++ KN + + + L
Sbjct: 97 LGYILGRKKKRKKEKKKNQLEYERLLKNLRKLSLILFYITFIFSL 141
Score = 26.5 bits (59), Expect = 3.6
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN---PVVYIYALLFSISGYLGVQVVLT 80
KK+KK+KKK + + ++ K + YI + I Y + +V +
Sbjct: 105 KKRKKEKKKNQLEYERLLKNLRKLSLILFYITFIFSLIYLYEKLLIVSS 153
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 31.3 bits (72), Expect = 0.089
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYA 64
++ +EE E+ E ++EEE+E L + KK + +KKK+ K K PV
Sbjct: 166 DDSKEELEKFEAQKEEEDEKLAK-----EALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
Query: 65 L 65
+
Sbjct: 221 I 221
Score = 29.8 bits (68), Expect = 0.32
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E ++ +EE E+ E ++EEED + L KK + +KKK+ K K+
Sbjct: 164 EIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP 214
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 31.3 bits (71), Expect = 0.092
Identities = 15/50 (30%), Positives = 33/50 (66%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
+++E E+E+E+EE++EE ++ ++K + K+ KK+KK++ +K
Sbjct: 29 SDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQK 78
Score = 30.9 bits (70), Expect = 0.11
Identities = 14/52 (26%), Positives = 33/52 (63%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+ +++E E+E+E+EE+++ + K++K + K+ KK+KK++ +K
Sbjct: 27 SDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQK 78
Score = 29.8 bits (67), Expect = 0.26
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
G +++E E+E+E+EE++E+ K++K + K+ KK+KK++ +K
Sbjct: 26 GSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQK 78
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 30.8 bits (70), Expect = 0.092
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
G G + E E E E+E +++++KK+KKKKK+ KK+KK+K
Sbjct: 117 GYGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 30.5 bits (69), Expect = 0.13
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 11/54 (20%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+ E+E + E+E E EEEE KK+KKKKK+ KK+KK+KK KK
Sbjct: 133 ETSEKETTAKVEKEAEVEEEE-----------KKEKKKKKEVKKEKKEKKDKKE 175
Score = 30.1 bits (68), Expect = 0.21
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E+E E EEEE++E+++++++ KK+K + K KKKKKKKKKK
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 30.8 bits (70), Expect = 0.094
Identities = 8/58 (13%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKK----KKKKNN 57
+ + +++ ++++ E++ L L KK++ ++K++++++K K ++
Sbjct: 123 DSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 27.0 bits (60), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
K E EE+E EEEE+ EEE+
Sbjct: 155 KKERAEEKEREEEEKAAEEEK 175
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.4 bits (71), Expect = 0.095
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
E+E ++ ++E+ + EE A + KK ++ KK KK
Sbjct: 1162 EKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTT 1211
Score = 27.9 bits (62), Expect = 1.2
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIY 63
++ ++E+ + EE E+ + + A K ++ KK KK KK ++ Y
Sbjct: 1166 DKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETY 1224
Score = 27.5 bits (61), Expect = 1.9
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 10 EEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
++ E E EE M +A K K + KKK K+K
Sbjct: 1212 KKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEK 1257
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 30.9 bits (70), Expect = 0.095
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 17 EEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E E+ D+H+ N ++ +KK+K+KK++ K +KK+
Sbjct: 141 EAAEKGGDVHLQANPTKLELLRKKEKEKKEQLKIQKKQS 179
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 30.9 bits (70), Expect = 0.11
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEE 23
+ E +E+E+EEEE+ +E EE
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEE 387
Score = 30.1 bits (68), Expect = 0.22
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+E+E+EEEE+ +E EEEE
Sbjct: 371 DEDEDEEEEQRSDEHEEEEG 390
Score = 30.1 bits (68), Expect = 0.24
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+E+EEEE+ +E EEEE +
Sbjct: 372 EDEDEEEEQRSDEHEEEEGE 391
Score = 29.7 bits (67), Expect = 0.27
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+E+EEEE+ +E EEEE ED
Sbjct: 373 DEDEEEEQRSDEHEEEEGED 392
Score = 28.5 bits (64), Expect = 0.64
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
+E+E+EEEE+ +E EEE
Sbjct: 370 VDEDEDEEEEQRSDEHEEE 388
Score = 28.5 bits (64), Expect = 0.65
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+EEEE+ +E EEEE E+
Sbjct: 374 EDEEEEQRSDEHEEEEGEDS 393
Score = 28.5 bits (64), Expect = 0.67
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
EE +E+E+EEEE+ +E +
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEE 387
Score = 28.2 bits (63), Expect = 0.98
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEE+ +E EEEE E+ E+
Sbjct: 376 EEEEQRSDEHEEEEGEDSEE 395
Score = 28.2 bits (63), Expect = 1.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+EEEE+ +E EEEE E+ +
Sbjct: 375 DEEEEQRSDEHEEEEGEDSE 394
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
+ EE+ +E EEEE E+ EEE
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEE 396
Score = 27.4 bits (61), Expect = 1.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEE+ +E EEEE E+ EE+
Sbjct: 377 EEEQRSDEHEEEEGEDSEEE 396
Score = 27.4 bits (61), Expect = 1.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 7 EEEEEEEEEEEEEEEEEDLHM 27
+ EE +E+E+EEEE+ D H
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHE 386
Score = 26.6 bits (59), Expect = 3.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
E EEEE E+ EEE + ED
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDG 404
Score = 26.6 bits (59), Expect = 3.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ EEEE E+ EEE + E+
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGS 405
Score = 26.2 bits (58), Expect = 4.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ +E EEEE E+ EEE +
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQS 400
Score = 25.5 bits (56), Expect = 7.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ + EE +E+E+EEEE+
Sbjct: 363 DPIDFEEVDEDEDEEEEQRS 382
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 31.2 bits (70), Expect = 0.11
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKK--------------KKKKKKKK 47
GK +E+ EEEEEEE + ++ + L K K KK +K ++
Sbjct: 160 GKVVDEKSEEEEEEELKTMKD---FIDLESQTKKPSVKDNGKSFWSAASVFSKKLQKWRQ 216
Query: 48 KKKKKKKKN 56
K+K KK ++
Sbjct: 217 KQKLKKPRS 225
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 30.4 bits (69), Expect = 0.12
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKK 51
E ++ +++EE EE +E LA KK +K + KKKK
Sbjct: 157 AERKDAKQKEEFAAEERKEA--------LAAAAKKSATPQKVETKKKK 196
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 29.8 bits (67), Expect = 0.12
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
K EE+EEE+++EEE+EEEEEE L
Sbjct: 77 KAEEKEEEKKKEEEKEEEEEEAL 99
Score = 27.8 bits (62), Expect = 0.78
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ EE+EEE+++EEE+EEEEE+
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEEE 97
Score = 26.3 bits (58), Expect = 2.6
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ + EE+EEE+++EEE+EEEE+
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEE 96
Score = 25.9 bits (57), Expect = 3.5
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
EE+ EE+EEE+++EEE+EE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
Score = 25.9 bits (57), Expect = 3.6
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL 25
+ EEE+++EEE+EEEEEE L
Sbjct: 79 EEKEEEKKKEEEKEEEEEEALAGL 102
Score = 24.8 bits (54), Expect = 9.7
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE+ EE+EEE+++EEE++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKE 92
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 31.0 bits (70), Expect = 0.12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 13/54 (24%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
G E E E++ EEE E KKKK++K K+K+ KK K +K
Sbjct: 1 GSRTESEAEKKILTEEELER-------------KKKKEEKAKEKELKKLKAAQK 41
Score = 27.9 bits (62), Expect = 1.4
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
K ++EE+ +E+E ++ + +++ L KK +KK +K+ + NP +I
Sbjct: 21 KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPEDFI 80
Score = 26.8 bits (59), Expect = 3.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
EEE E ++++EE+ +E+E A K + ++ KK +KK+
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKS 66
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 30.7 bits (70), Expect = 0.12
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEE E E EE E DL
Sbjct: 276 EEEEESSEGAAETIEEPELDL 296
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 30.7 bits (70), Expect = 0.13
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
GE +E EE + +E + E+ L + + +++++KK KKK
Sbjct: 750 ATGEYGNGDESEESDFDEYKLEEAREMLLAMHLLSAEERQEKKAKKKNSGP 800
>gnl|CDD|234124 TIGR03155, sulfolob_CbsB, cytochrome b558/566, subunit B. Members
of this protein family are CbsB, one subunit of a highly
glycosylated, heterodimeric, mono-heme cytochrome
b558/566, found in Sulfolobus acidocaldarius and several
other members of the Sulfolobales, a branch of the
Crenarchaeota.
Length = 302
Score = 30.5 bits (69), Expect = 0.14
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 61 YIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFA 110
Y+ L S GYL V +K+ +++A+ V + ++ F+FFA
Sbjct: 153 YLDFYLISAIGYLVYTVFWRKIKSKRSYIAIIV-----GLLSMIPFIFFA 197
>gnl|CDD|233125 TIGR00776, RhaT, RhaT L-rhamnose-proton symporter family protein.
These proteins are members of the L-Rhamnose Symporter
(RhaT) Family (TC 2.A.7). This family includes two
characterized members, both of which function as
L-rhamnose:H+ symporters and have 10 GES predicted
transmembrane domains [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 290
Score = 30.4 bits (69), Expect = 0.14
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 44 KKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIV 103
+ K K K + N I LL S GYL VV G V + I+
Sbjct: 136 RSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGII 195
Query: 104 LSFVF-FAKPF 113
+ AKP
Sbjct: 196 FNLGHILAKPL 206
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 30.4 bits (69), Expect = 0.15
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
E E L L+ K+K++ KK+KKKK KK K NP++
Sbjct: 330 STETPPPASLSHSPPAAFERPLA-----LSPKRKREGDKKQKKKKSKKLKLTFNPLI 381
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 29.3 bits (66), Expect = 0.15
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E E ++EEEEEEEEE++ EDL
Sbjct: 5 EAEVDDEEEEEEEEEDDLEDL 25
Score = 28.9 bits (65), Expect = 0.20
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
+EEEEEEEEE++ E+ +ED
Sbjct: 9 DDEEEEEEEEEDDLEDLSDED 29
Score = 28.6 bits (64), Expect = 0.28
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
EEEEEEEEE++ E+ +E++ A ++ ++ ++++K++++
Sbjct: 11 EEEEEEEEEDDLEDLSDEDEFID--EAEAEDDRRHRRLDRRREKEEEED 57
Score = 28.2 bits (63), Expect = 0.44
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 6 EEEEEEEEEEEEEEEEEEDLH 26
E ++EEEEEEEEE++ E+
Sbjct: 7 EVDDEEEEEEEEEDDLEDLSD 27
Score = 27.8 bits (62), Expect = 0.54
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E ++EEEEEEEEE++ E+
Sbjct: 7 EVDDEEEEEEEEEDDLEDLS 26
Score = 27.8 bits (62), Expect = 0.56
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 6 EEEEEEEEEEEEEEEEEEDL 25
+ E E ++EEEEEEEEE+DL
Sbjct: 3 DTEAEVDDEEEEEEEEEDDL 22
Score = 27.8 bits (62), Expect = 0.62
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E E ++EEEEEEEEE++ +
Sbjct: 4 TEAEVDDEEEEEEEEEDDLE 23
Score = 27.4 bits (61), Expect = 0.72
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ E E ++EEEEEEEEE++
Sbjct: 3 DTEAEVDDEEEEEEEEEDDL 22
Score = 26.6 bits (59), Expect = 1.7
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
++EEEEEEEEE++ E+ D
Sbjct: 8 VDDEEEEEEEEEDDLEDLSD 27
Score = 25.5 bits (56), Expect = 4.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
EEEEEEEE++ E+ +E+E
Sbjct: 9 DDEEEEEEEEEDDLEDLSDEDE 30
>gnl|CDD|218991 pfam06326, Vesiculo_matrix, Vesiculovirus matrix protein. This
family consists of several Vesiculovirus matrix
proteins. The matrix (M) protein of vesicular
stomatitis virus (VSV) expressed in the absence of
other viral components causes many of the cytopathic
effects of VSV, including an inhibition of host gene
expression and the induction of cell rounding. It has
been shown that M protein also induces apoptosis in the
absence of other viral components. It is thought that
the activation of apoptotic pathways causes the
inhibition of host gene expression and cell rounding by
M protein.
Length = 229
Score = 30.1 bits (68), Expect = 0.16
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYA 64
L++ K K K K+ KK K KK N + A
Sbjct: 1 LSLFKLLKLKGKEVASKKSKGSKKLNMSMDWDA 33
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 30.1 bits (68), Expect = 0.16
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
E +EE E EEE E + + + A +K+ +++ +K+K + K++ +
Sbjct: 70 ELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSA 123
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 30.2 bits (68), Expect = 0.16
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ +E+EEEEE EEEEEEE+E++
Sbjct: 263 KELKEDEEEEETEEEEEEEDEDE 285
Score = 28.3 bits (63), Expect = 0.81
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G EE+E +E+EEEEE EEEE+
Sbjct: 257 GDYVEEKELKEDEEEEETEEEEE 279
Score = 28.3 bits (63), Expect = 0.81
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE+E +E+EEEEE EEEEE+
Sbjct: 261 EEKELKEDEEEEETEEEEEE 280
Score = 27.5 bits (61), Expect = 1.5
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+E +E+EEEEE EEEEEE+
Sbjct: 262 EKELKEDEEEEETEEEEEEE 281
Score = 26.3 bits (58), Expect = 4.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G+ EE+E +E+EEEEE EE+
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEE 277
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 30.4 bits (69), Expect = 0.17
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
EEEEEEE+D+
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDDM 304
Score = 29.6 bits (67), Expect = 0.26
Identities = 8/23 (34%), Positives = 8/23 (34%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHM 27
EEEEEEED
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDMG 305
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.4 bits (69), Expect = 0.18
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 8/56 (14%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
K +++EE + E+EE+E +E+ ++K KK+++KKKK+ +K +K K P
Sbjct: 546 KLDDKEELQREKEEKEALKEQK--------RLRKLKKQEEKKKKELEKLEKAKIPP 593
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 29.7 bits (68), Expect = 0.18
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 41 KKKKKKKKKKKKKKKNNPVVYIYA 64
KKKK KKK KK + V +I+A
Sbjct: 1 AKKKKTVKKKVKKNIPSGVAHIHA 24
Score = 26.3 bits (59), Expect = 3.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 34 MKKKKKKKKKKKK 46
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.1 bits (56), Expect = 6.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 33 AMKKKKKKKKKKK 45
A KKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.4 bits (69), Expect = 0.19
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKK 47
E+ E ++ EE EE EE L KKKK+KKK+ +K
Sbjct: 404 EKAEGKKAIEEIREELIEE------GLLKSKKKKRKKKEWFEK 440
Score = 25.4 bits (56), Expect = 8.6
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E +E E + E+ ++ ++ K KKKK+KKK+
Sbjct: 387 SELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEW 437
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 30.4 bits (68), Expect = 0.19
Identities = 12/58 (20%), Positives = 32/58 (55%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
K E + + +E EE+EE++E+ + + + + +K ++K+++ + NP++
Sbjct: 308 KEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMESATNPIL 365
Score = 26.2 bits (57), Expect = 4.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ +EE + + +E EE+EED
Sbjct: 304 AEAHKEEVQSDRPDEIGEEKEED 326
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 30.2 bits (68), Expect = 0.19
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
E +EEE EEEEE + EE
Sbjct: 398 RVVREVDEEEIEEEEEAMQPEE 419
Score = 27.5 bits (61), Expect = 1.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
E +EEE EEEEE + EE
Sbjct: 402 EVDEEEIEEEEEAMQPEEM 420
Score = 27.5 bits (61), Expect = 2.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
+EEE EEEEE + EE E
Sbjct: 403 VDEEEIEEEEEAMQPEEME 421
Score = 27.1 bits (60), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHM 27
E +EEE EEEEE + E++ M
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEM 422
Score = 26.4 bits (58), Expect = 4.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
K E +EEE EEEEE +
Sbjct: 397 KRVVREVDEEEIEEEEEAMQP 417
Score = 26.0 bits (57), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
EEE EEEEE + EE E E
Sbjct: 405 EEEIEEEEEAMQPEEMEME 423
Score = 25.6 bits (56), Expect = 7.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 4 GEEEEEEEEEEEEEEEEEE 22
EE EEEEE + EE E E
Sbjct: 405 EEEIEEEEEAMQPEEMEME 423
>gnl|CDD|205992 pfam13821, DUF4187, Domain of unknown function (DUF4187). This
family is found at the very C-terminus of proteins that
carry a G-patch domain, pfam01585. The domain is short
and cysteine-rich.
Length = 55
Score = 28.3 bits (64), Expect = 0.19
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 10 EEEEEEEEEEEEEEDLHMCLNYL 32
+EEE+E EE EE L + L+YL
Sbjct: 1 DEEEDEFEELSPEERLQLLLSYL 23
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.1 bits (68), Expect = 0.20
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
K E +++ E+++++++E++E L K KK KK KKK K K +
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
Score = 28.1 bits (63), Expect = 0.95
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+++ E+++++++E++E + KK KK KKK K K + N
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117
Score = 25.4 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 28 CLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
N K +KKKKKKK+KK+ K + +
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKL 91
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 30.1 bits (68), Expect = 0.21
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDL 25
GK E E +EE++++++E L
Sbjct: 456 GGKLEMPGSESVSDEEDDDDDDEVL 480
Score = 26.2 bits (58), Expect = 4.6
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
MG E E +EE+++++++
Sbjct: 455 MGGKLEMPGSESVSDEEDDDDDDE 478
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 29.8 bits (68), Expect = 0.23
Identities = 9/21 (42%), Positives = 19/21 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E++++++E+E+E++EEE DL
Sbjct: 53 LEDDDDDDEDEDEDDEEEADL 73
Score = 29.1 bits (66), Expect = 0.45
Identities = 7/22 (31%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ + E++++++E+E+E++EEE
Sbjct: 50 EEDLEDDDDDDEDEDEDDEEEA 71
Score = 28.7 bits (65), Expect = 0.54
Identities = 8/20 (40%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E +EE+ E++++++E+E+ED
Sbjct: 47 ELDEEDLEDDDDDDEDEDED 66
Score = 28.3 bits (64), Expect = 0.64
Identities = 6/21 (28%), Positives = 17/21 (80%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E +EE+ E++++++E+E++
Sbjct: 45 ESELDEEDLEDDDDDDEDEDE 65
Score = 28.3 bits (64), Expect = 0.67
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
++++E+E+E++EEE + D A +++ +K +K +K + KK
Sbjct: 57 DDDDEDEDEDDEEEADLGPDPEEARERFAELREQYEKTRKAIEKHGRGSKK 107
Score = 27.9 bits (63), Expect = 1.0
Identities = 7/20 (35%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+EE+ E++++++E+E+E+D
Sbjct: 48 LDEEDLEDDDDDDEDEDEDD 67
Score = 27.9 bits (63), Expect = 1.1
Identities = 6/20 (30%), Positives = 19/20 (95%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+EE+ E++++++E+E+E+++
Sbjct: 49 DEEDLEDDDDDDEDEDEDDE 68
Score = 27.2 bits (61), Expect = 1.8
Identities = 6/20 (30%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E E +EE+ E++++++E++
Sbjct: 44 IESELDEEDLEDDDDDDEDE 63
Score = 26.8 bits (60), Expect = 2.7
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E E +EE+ E++++++ED
Sbjct: 43 AIESELDEEDLEDDDDDDED 62
Score = 26.0 bits (58), Expect = 4.5
Identities = 6/19 (31%), Positives = 16/19 (84%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
+++++E+E+E++EEE +
Sbjct: 56 DDDDDEDEDEDDEEEADLG 74
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 29.6 bits (67), Expect = 0.23
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
EE+ EE+E E+EE+E +EE K +K++++K+ ++ +K KN P+
Sbjct: 15 EEKREEKEREKEEKERKEEK------EKEWGKGLVQKEEREKRLEELEKAKNKPL 63
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 30.0 bits (68), Expect = 0.24
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E++++ E+EEE++D
Sbjct: 272 PPPPPEDDDDPPEDEEEQDD 291
Score = 29.2 bits (66), Expect = 0.39
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ EEE E+D
Sbjct: 260 APPQPPEEEPPPPPPPPEDD 279
Score = 28.8 bits (65), Expect = 0.58
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E++++ E+EEE+++
Sbjct: 273 PPPPEDDDDPPEDEEEQDDAE 293
Score = 28.8 bits (65), Expect = 0.67
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ EEE E+++D
Sbjct: 262 PQPPEEEPPPPPPPPEDDDD 281
Score = 28.5 bits (64), Expect = 0.77
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ EEE E++D
Sbjct: 261 PPQPPEEEPPPPPPPPEDDD 280
>gnl|CDD|223802 COG0730, COG0730, Predicted permeases [General function prediction
only].
Length = 258
Score = 29.6 bits (67), Expect = 0.26
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 27 MCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVY-----IYALLFSISGYLGVQVVLTL 81
+ L L M + K + + + + ++ + LF + G G+ L L
Sbjct: 110 LLLLALYMLLGPRLAKAEDRAARLRPLLFALALLIGFLAGFLSGLFGVGGGFGIVPALLL 169
Query: 82 VKTCGAFVAVTVTTCRKAVTIVLSFVFFA 110
+ +AV + T +
Sbjct: 170 LLLLPLKLAVATSLAIILNTASNGAALYL 198
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 29.8 bits (67), Expect = 0.26
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
EEE +E ++ + ++ EE + +
Sbjct: 285 PEEEPDEPDQTDPDDGEETDQI 306
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 29.7 bits (67), Expect = 0.26
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNN 57
M K KK KKKKKKKKK++K +
Sbjct: 272 MVKFKKPKKKKKKKKKRRKDLDED 295
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 29.6 bits (66), Expect = 0.28
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
G + E +E ++ E EE ++ H KKKK++K+K++KKKKKK
Sbjct: 255 SGTAPDSEPDEPKDAEAEETKKSPKH--------KKKKQRKEKEEKKKKKKHHHHRCH 304
Score = 29.3 bits (65), Expect = 0.43
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 15 EEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSIS 70
E + E+ D+ + K KK KKK+KK+K+K++ K K V +LL ++
Sbjct: 182 ETSKSPEKGDVPA----VEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALD 233
Score = 27.0 bits (59), Expect = 2.4
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNNP 58
++K K++KKK++K+K+ +++ +
Sbjct: 94 LEKDKREKKKREKEKRGRRRHHSLG 118
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 29.6 bits (67), Expect = 0.28
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 10 EEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
+++E + +E E D N KKKKKKK KKKK KK
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 27.3 bits (61), Expect = 1.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 9 EEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
+++E + +E E + KKKKKK KKKK KK
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 25.7 bits (57), Expect = 6.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+++E + +E E +++ + KKKK KKKK KK K
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 25.3 bits (56), Expect = 9.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
+++E + +E E ++++ + KKK KKKK KK K
Sbjct: 157 KKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 29.8 bits (67), Expect = 0.29
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
GEEEE EE EE+EEEE EEE
Sbjct: 79 GEEEEVEEGEEDEEEEGEEE 98
Score = 29.0 bits (65), Expect = 0.53
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+ EEEE EE EE+EEEE EE
Sbjct: 76 SEDGEEEEVEEGEEDEEEEGEE 97
Score = 28.6 bits (64), Expect = 0.68
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
EEE EE EE+EEEE EEE
Sbjct: 78 DGEEEEVEEGEEDEEEEGEEES 99
Score = 28.3 bits (63), Expect = 0.85
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EE EE EE+EEEE EEE E+
Sbjct: 82 EEVEEGEEDEEEEGEEESEEF 102
Score = 27.1 bits (60), Expect = 2.0
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E+ EEEE EE EE+EEEE +
Sbjct: 76 SEDGEEEEVEEGEEDEEEEGE 96
Score = 27.1 bits (60), Expect = 2.1
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
EE EE+EEEE EEE EE E L
Sbjct: 84 VEEGEEDEEEEGEEESEEFEPL 105
Score = 25.2 bits (55), Expect = 9.3
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 2 GKGEEEEEEEEEEEEEEEEE 21
+GEE+EEEE EEE EE E
Sbjct: 85 EEGEEDEEEEGEEESEEFEP 104
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.5 bits (67), Expect = 0.30
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKK 51
+ E +EE +E++EE+++EE E L L+ ++++K ++K++KK+ +K
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAK---LAKLSPEEQRKLEEKERKKQARK 322
Score = 29.1 bits (66), Expect = 0.38
Identities = 13/51 (25%), Positives = 32/51 (62%), Gaps = 8/51 (15%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
+ EE +E++EE+++EE E + + ++++K ++K++KK+ +K
Sbjct: 280 RQEEAQEKKEEKKKEEREAKLA--------KLSPEEQRKLEEKERKKQARK 322
Score = 28.0 bits (63), Expect = 1.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 19/62 (30%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKK-----------KKKKKKKKK 54
EEEEE+ + EEE +EE KK++KKK++++ +K ++K++K
Sbjct: 266 EEEEEKILKAAEEERQEE--------AQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 55 KN 56
K
Sbjct: 318 KQ 319
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 29.3 bits (66), Expect = 0.31
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 2 GKGEEEEEEEEEEEEEEEEEE 22
GKG EEE + E E E+ EE
Sbjct: 238 GKGRRREEENDAEAESEKTEE 258
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 29.8 bits (67), Expect = 0.32
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 10/49 (20%)
Query: 11 EEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
+E++E+E+D ++ K++ +KK+K KKK +K+K NPV
Sbjct: 334 YMGGIDEDDEDEDD----------EESKEEVEKKQKVKKKPRKRKVNPV 372
Score = 27.8 bits (62), Expect = 1.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
G +E++E+E++EE +E++ +KK+K KKK +K+K NN
Sbjct: 333 GYMGGIDEDDEDEDDEESKEEV-----------EKKQKVKKKPRKRKVNPVSNN 375
Score = 26.3 bits (58), Expect = 4.3
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
E E EE EEE + + KKK +K+ ++ K + + K +
Sbjct: 254 REIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKMRPVRAKPSD 307
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 29.1 bits (65), Expect = 0.32
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Query: 5 EEEEEE-----EEEEEEEEEEEEED 24
EEE E+ +EE+EE EE EEE
Sbjct: 35 EEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 28.3 bits (63), Expect = 0.68
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
Query: 5 EEEEEEEEEEE---EEEEEEEEDL 25
EE+EEE E+ E +EE+EE E++
Sbjct: 32 EEDEEEMEDWEDSLDEEDEEAEEV 55
Score = 28.0 bits (62), Expect = 1.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
EE E+ E+ +EE+EE EE
Sbjct: 35 EEEMEDWEDSLDEEDEEAEE 54
Score = 26.4 bits (58), Expect = 3.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E EE+EEE E+ E+ +EED
Sbjct: 30 EVEEDEEEMEDWEDSLDEED 49
Score = 26.0 bits (57), Expect = 4.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 6/26 (23%)
Query: 5 EEEEE------EEEEEEEEEEEEEED 24
++EEE EE EE+EEE E+ ED
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWED 43
Score = 26.0 bits (57), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
+ + EE EE+EEE E+ E+ L
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSL 45
Score = 25.6 bits (56), Expect = 5.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 4 GEEEEEEEEEEEEE 17
EE+EE EE EEE
Sbjct: 46 DEEDEEAEEVEEET 59
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known
as Stage III sporulation protein F, and related
proteins. The integral membrane protein SpoVB has been
implicated in the biosynthesis of the peptidoglycan
component of the spore cortex in Bacillus subtilis. This
model represents a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Proteins from
the MATE family are involved in exporting metabolites
across the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 434
Score = 29.4 bits (67), Expect = 0.33
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKKKKNNPVVY----IYALLFSISG 71
L +KK+++ K+ +K + K + + YA+ ++S
Sbjct: 193 VLLYYYRKKRRELKRLLRKSPRSKISTKEILKELLSYAIPITLSS 237
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 29.6 bits (66), Expect = 0.33
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
E EE+E EEE+EEEE+ K+ K+ KKK++K K+ PV
Sbjct: 768 AESSEEDESSEEEKEEEEN-------------KEVSAKRAKKKQRKNMLKSLPV 808
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 29.7 bits (67), Expect = 0.33
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKK 54
A + +KK K K KK +K KK
Sbjct: 768 AFRGEKKAKPKAAKKDARKAKK 789
Score = 28.9 bits (65), Expect = 0.62
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 36 KKKKKKKKKKKKKKKKKKKKN 56
+ +KK K K KK +K KK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKP 790
Score = 27.4 bits (61), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 37 KKKKKKKKKKKKKKKKKKKNN 57
+ +KK K K KK +K K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKP 790
Score = 27.0 bits (60), Expect = 2.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KK K K KK +K KK K
Sbjct: 773 KKAKPKAAKKDARKAKKPSAK 793
Score = 27.0 bits (60), Expect = 2.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKK 55
K K KK +K KK K +K
Sbjct: 774 KAKPKAAKKDARKAKKPSAKTQK 796
Score = 26.2 bits (58), Expect = 5.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 38 KKKKKKKKKKKKKKKKKKNNP 58
+ +KK K K KK +K P
Sbjct: 770 RGEKKAKPKAAKKDARKAKKP 790
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 28.7 bits (65), Expect = 0.34
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNY 31
E+E E EEE++++E+EEE+ + ++
Sbjct: 23 EDEILELEEEDDDDEDEEEEYELLASF 49
Score = 25.6 bits (57), Expect = 3.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
GE E EE+E E EEE+++D
Sbjct: 16 GELPEPEEDEILELEEEDDDD 36
Score = 24.5 bits (54), Expect = 9.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E EE+E E EEE++++E++
Sbjct: 20 EPEEDEILELEEEDDDDEDE 39
>gnl|CDD|225196 COG2314, XynA, Predicted membrane protein [Function unknown].
Length = 95
Score = 28.5 bits (64), Expect = 0.35
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 50 KKKKKKNNPVVYIYALLFSISG----YLG 74
K KKN + + A LF I G YLG
Sbjct: 3 TPKPKKNKLIAGLLAALFGIFGLHKFYLG 31
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 29.5 bits (67), Expect = 0.37
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEE----EDLHMCLNY 31
+ +EE EEEEE + +DL + L Y
Sbjct: 319 AAAEAAKAQEEAAEEEEESINDILALDDLELELGY 353
>gnl|CDD|198414 cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor
(BI)-1/YccA-like proteins. This family is comprised of
bacterial relatives of the mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. In plants, BI-1 like
proteins play a role in pathogen resistance. A
characterized prokaryotic member, Escherichia coli YccA,
has been shown to interact with ATP-dependent protease
FtsH, which degrades abnormal membrane proteins as part
of a quality control mechanism to keep the integrity of
biological membranes.
Length = 211
Score = 29.1 bits (66), Expect = 0.37
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 48 KKKKKKKKNNPVVYIYALL--FSIS----GYLGVQVVLTLVKTCGAFVAVTV---TTCRK 98
K P+ + +A L ++S Y G + T F +++ TT +K
Sbjct: 60 INKMSVATALPLFFAFAALTGLTLSPILLVYTGASIAQAFFTTAATFGGLSLYGYTT-KK 118
Query: 99 AVTIVLSFVFFA 110
++ + SF+F
Sbjct: 119 DLSFLGSFLFMG 130
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 29.5 bits (67), Expect = 0.37
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
E EEEE E E ++KK++K +KK +K++ +K
Sbjct: 395 EGEEEEGENGNLSPAERK--------KLRKKQRKAEKKAEKEEAEKAAAKKKA 439
Score = 26.4 bits (59), Expect = 3.9
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
K + E++ E+EE E+ + KK + KK K + KK +P+
Sbjct: 417 KQRKAEKKAEKEEAEKAAAK------------KKAEAAAKKAKGPDGETKKVDPDPL 461
Score = 25.7 bits (57), Expect = 7.1
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 9 EEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
E EEEE E + +KK +K++ +K KKK +
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAA 443
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 29.1 bits (65), Expect = 0.38
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 15 EEEEEEEEED 24
+EEEEEEE+D
Sbjct: 159 QEEEEEEEQD 168
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain.
This family represents the C-terminus (approximately
300 residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 29.1 bits (65), Expect = 0.42
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
EEEEEE EEEEE + E+D+ L + +KK + ++++++ K+K
Sbjct: 14 GEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKAL 63
Score = 26.0 bits (57), Expect = 4.5
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
GEEEEEE EEEEE + E++ + + + K + ++++++ K+K +
Sbjct: 14 GEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALE 64
Score = 25.3 bits (55), Expect = 9.7
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEE+E EEEEEE EEEE+
Sbjct: 7 LEEEDESGEEEEEESEEEEE 26
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 29.3 bits (65), Expect = 0.45
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
K EE E E+E+E+E E E E
Sbjct: 595 KAREEREREKEKEKERERERE 615
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 29.1 bits (65), Expect = 0.46
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
K +E+ +E+++ E ++E+++ + L K+ KK+ KK KK KKK
Sbjct: 183 KNPGKEQNGDEDDDFETDDEDEMEVESPELQQKRSKKQSGSLTKKFKKNHKKKGP 237
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 29.2 bits (65), Expect = 0.48
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
++ E E+E E E E
Sbjct: 225 PNTQQAVEHEDEPTEPEREGP 245
Score = 27.6 bits (61), Expect = 1.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNY 31
+ E E+E E E E H +Y
Sbjct: 228 QQAVEHEDEPTEPEREGPPFPGHRSHSY 255
Score = 27.2 bits (60), Expect = 2.0
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
++ E E+E E E E
Sbjct: 225 PNTQQAVEHEDEPTEPEREGPP 246
Score = 26.9 bits (59), Expect = 2.6
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
++ E E+E E E E
Sbjct: 222 APSPNTQQAVEHEDEPTEPEREG 244
Score = 26.1 bits (57), Expect = 4.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 2 GKGEEEEEEEEEEEEEEEEEE 22
+ E E+E E E E
Sbjct: 228 QQAVEHEDEPTEPEREGPPFP 248
Score = 26.1 bits (57), Expect = 5.6
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G E E ++
Sbjct: 145 GPHEPAPPESHNPSPNQQPSSFL 167
Score = 25.7 bits (56), Expect = 6.7
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
E+ EE E E E D
Sbjct: 166 FLQPSHEDSPEEPEPPTSEPEPD 188
Score = 25.7 bits (56), Expect = 7.1
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
E+ EE E E E +
Sbjct: 169 PSHEDSPEEPEPPTSEPEPDSPG 191
Score = 25.3 bits (55), Expect = 9.5
Identities = 1/23 (4%), Positives = 4/23 (17%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLH 26
E ++ +
Sbjct: 150 APPESHNPSPNQQPSSFLQPSHE 172
Score = 25.3 bits (55), Expect = 9.9
Identities = 5/23 (21%), Positives = 5/23 (21%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G EE E E
Sbjct: 109 GSAEELASGLSPENTSGSSPESP 131
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 28.2 bits (63), Expect = 0.51
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK------KNNP 58
+E + EE +EE EE +L A KK K KK +++ K+ KK NN
Sbjct: 3 DESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNK 62
Query: 59 VVYIYAL 65
Y+YA+
Sbjct: 63 EQYVYAI 69
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 29.0 bits (65), Expect = 0.51
Identities = 8/49 (16%), Positives = 24/49 (48%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKK 49
+ K +E +++ EE E+ ++ A + +++ ++K+K+
Sbjct: 690 LSKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 28.2 bits (63), Expect = 1.0
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKK 50
E +++ EE E+ +D + +A + +++ ++K+K+
Sbjct: 696 ENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
>gnl|CDD|225838 COG3301, NrfD, Formate-dependent nitrite reductase, membrane
component [Inorganic ion transport and metabolism].
Length = 305
Score = 28.9 bits (65), Expect = 0.52
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 62 IYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVFFA----KPFTF 115
I A+ ++ L L + G+ + + ++L +F +P+TF
Sbjct: 27 IAAMAVVLAVLLKRFGKLKALLRTGSVLGF--------LAVILGLLFLIFDLTRPWTF 76
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 28.9 bits (65), Expect = 0.53
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNN 57
A K +K K ++ +KK KK +
Sbjct: 346 ATAKGAQKVKNRRARKKAKKARLAK 370
Score = 27.7 bits (62), Expect = 1.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKK 55
LA +K K +K K ++ +KK K
Sbjct: 341 LAQEKATAKGAQKVKNRRARKKAK 364
Score = 26.6 bits (59), Expect = 3.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNNPVVY 61
A +K K ++ +KK KK + K +Y
Sbjct: 348 AKGAQKVKNRRARKKAKKARLAKVAKALY 376
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 28.6 bits (64), Expect = 0.54
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
KKK K KK K K KK + KKK
Sbjct: 92 KKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 0.96
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKN 56
A++KKKK K KK K K KK + K
Sbjct: 88 AVEKKKKGKSKKNKLKGKKDEDKK 111
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVVYIY 63
K K KK K K KK + KKK + + Y
Sbjct: 94 KGKSKKNKLKGKKDEDKKKAREGWNNFSY 122
Score = 26.3 bits (58), Expect = 3.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 39 KKKKKKKKKKKKKKKKKNN 57
KKKK K KK K K KK +
Sbjct: 91 KKKKGKSKKNKLKGKKDED 109
Score = 25.2 bits (55), Expect = 7.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 37 KKKKKKKKKKKKKKKKKKKNN 57
KKKK K KK K K KK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKK 111
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 28.7 bits (64), Expect = 0.54
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
K E++E++EEEEEE+EEE EE + ++ ++++++ ++ K +K N
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKN 98
Score = 27.5 bits (61), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
EEEEEE+EEE EE E+ E++ + + ++ ++ K +KK N
Sbjct: 52 EEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFN 104
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
subunit.
Length = 1079
Score = 29.1 bits (65), Expect = 0.56
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 36 KKKKKKKKKKKKKKKKKKKKNNPVVYIYAL 65
+KK K KK KKK K +P V ++ L
Sbjct: 663 RKKSSKSSKKGSDKKKSGKHVDPTVPVFNL 692
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 28.9 bits (65), Expect = 0.56
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+ + K KKKKKK+KKK+++ K+++K
Sbjct: 738 SDSVEEKTKKKKKKEKKKEEEYKREEK 764
Score = 28.5 bits (64), Expect = 0.86
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKK------KKKKKKKKKKKKKKNNPV 59
E +EE+E + E E D N ++ ++K + KK+K KK+ K+N
Sbjct: 1521 ENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTE 1580
Query: 60 VYIYALL 66
+ L
Sbjct: 1581 AELDFFL 1587
Score = 27.8 bits (62), Expect = 1.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCL---------NYLAMKKKKKKKKKKKKKKKKK 51
EE+E + E E ++E++ +L L +Y KK+K KK+ K +
Sbjct: 1526 EEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEA 1581
Score = 26.2 bits (58), Expect = 4.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKK 55
KKKKKK+KKK+++ K+++K
Sbjct: 744 KTKKKKKKEKKKEEEYKREEKA 765
Score = 25.8 bits (57), Expect = 6.9
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKN 56
+K KKKKKK+KKK+++ K+++
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEK 764
Score = 25.8 bits (57), Expect = 7.3
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
++K KKKKKK+KKK+++ K++
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEK 764
Score = 25.4 bits (56), Expect = 9.2
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
KKKKKK+KKK+++ K+++K +
Sbjct: 746 KKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 28.9 bits (65), Expect = 0.56
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKK 49
+EE+EE E+E EEE D AMKK + + K++ +
Sbjct: 112 KLDEEQEERVEKEREEELAGD--------AMKKLENRTADSKREME 149
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.5 bits (64), Expect = 0.57
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 7 EEEEEEEEEEEEEEEEED 24
EEEEEE +EEEEEE D
Sbjct: 74 EEEEEENGNDEEEEEEFD 91
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 5 EEEEEEEEEEEEEEEE 20
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 6 EEEEEEEEEEEEEEEE 21
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 25.8 bits (57), Expect = 4.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 4 GEEEEEEEEEEEEEEE 19
EEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking.
Sec14-like Golgi-trafficking domain The GOLD domain is
always found combined with lipid- or
membrane-association domains.
Length = 136
Score = 28.5 bits (64), Expect = 0.59
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
E +EEEEEE EEEE E D+
Sbjct: 52 SESSDEEEEEEAEEEEAETGDV 73
Score = 27.3 bits (61), Expect = 1.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
+EEEEEE EEEE E + E
Sbjct: 55 SDEEEEEEAEEEEAETGDVE 74
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 28.8 bits (65), Expect = 0.61
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 32 LAMKKKKK--KKKKKKKKKKKKKKKK 55
L + K K K + K KK K K
Sbjct: 185 LLLAKHKILIPSLKTRPKGKKYVKIK 210
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.8 bits (64), Expect = 0.62
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 4 GEEEEEEEEEEEEEEEEEE-----EDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
E E + EEE ++ +EE EDL LN + ++ + ++K ++ NN
Sbjct: 3873 VSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANN 3931
Score = 25.3 bits (55), Expect = 9.2
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 8 EEEEEEEEEEEEEEEEDL 25
E+++ +E+E+EEE +D+
Sbjct: 3946 EDKDRQEKEDEEEMSDDV 3963
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 28.0 bits (62), Expect = 0.63
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCL 29
G + E ++EE++EEEEEEE+DL L
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDDLGFSL 110
Score = 26.4 bits (58), Expect = 2.8
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 2 GKGEEEEEEEEEEEEEEEEEE 22
G E ++EE++EEEEEEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 28.5 bits (64), Expect = 0.64
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 6 EEEEEEEEEEEEEEEEEED 24
E ++++ EE EEEEE+EED
Sbjct: 11 ESDDDDSEEYEEEEEDEED 29
Score = 27.8 bits (62), Expect = 0.96
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E ++++ EE EEEEE+EE+
Sbjct: 11 ESDDDDSEEYEEEEEDEEDA 30
Score = 27.8 bits (62), Expect = 1.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
++++ EE EEEEE+EE+ E L
Sbjct: 13 DDDDSEEYEEEEEDEEDAESL 33
Score = 27.4 bits (61), Expect = 1.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE EEEEE+EE+ E E D
Sbjct: 18 EEYEEEEEDEEDAESLESSD 37
Score = 26.6 bits (59), Expect = 2.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
+ E ++++ EE EEEEE+E+
Sbjct: 8 IDYESDDDDSEEYEEEEEDEE 28
Score = 26.6 bits (59), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
++ EE EEEEE+EE+ E +
Sbjct: 15 DDSEEYEEEEEDEEDAESLE 34
Score = 26.6 bits (59), Expect = 2.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ EE EEEEE+EE+ E E
Sbjct: 16 DSEEYEEEEEDEEDAESLES 35
Score = 26.2 bits (58), Expect = 3.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
+++ EE EEEEE+EE+ E
Sbjct: 13 DDDDSEEYEEEEEDEEDAES 32
Score = 25.8 bits (57), Expect = 5.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE EEEEE+EE+ E E
Sbjct: 17 SEEYEEEEEDEEDAESLESS 36
Score = 25.4 bits (56), Expect = 7.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 6 EEEEEEEEEEEEEEEEEEDL 25
+ E ++++ EE EEEEED
Sbjct: 8 IDYESDDDDSEEYEEEEEDE 27
>gnl|CDD|220077 pfam08938, DUF1916, Domain of unknown function (DUF1916). This
domain is found in various eukaryotic HBS1-like
proteins.
Length = 148
Score = 28.2 bits (63), Expect = 0.65
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E EEE+E+E E+E E D
Sbjct: 53 VEPVEEEDEDEYEDENERRD 72
Score = 27.4 bits (61), Expect = 1.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHM 27
EEE+E+E E+E E + E +
Sbjct: 57 EEEDEDEYEDENERRDSESVSN 78
Score = 26.2 bits (58), Expect = 3.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 5 EEEEEEEEEEEEEEEEEE 22
EEE+E+E E+E E + E
Sbjct: 57 EEEDEDEYEDENERRDSE 74
Score = 25.5 bits (56), Expect = 6.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNY 31
E EEE+E+E E+E + +
Sbjct: 53 VEPVEEEDEDEYEDENERRDSESV 76
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 28.4 bits (63), Expect = 0.66
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKK 43
+GEEEE EEE E E EE+ ++ KK+K
Sbjct: 236 KQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQK 277
Score = 28.0 bits (62), Expect = 0.96
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEE EE + EEEE+EE
Sbjct: 177 EEEERLEESDGREEEEDEEV 196
Score = 28.0 bits (62), Expect = 0.99
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
EEEE EE + EEEE+E+
Sbjct: 173 DVDNEEEERLEESDGREEEEDEE 195
Score = 26.1 bits (57), Expect = 5.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ EE EE + EEEE+EE
Sbjct: 177 EEEERLEESDGREEEEDEEVGS 198
Score = 25.7 bits (56), Expect = 7.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G+G E EEEEEE E ++ ED
Sbjct: 202 GEGNRELNEEEEEEAEGSDDGED 224
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 28.6 bits (64), Expect = 0.67
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
+E E E ++ E+++EE + KKK KKK+++K +
Sbjct: 151 DSDNKEAPETGREGDDGEDDDEE------GSDGEEDGAKKKAKKKRQRKPES 196
Score = 27.0 bits (60), Expect = 2.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
G E ++ E+++EE + EE+ KKK KKK+++K + +K
Sbjct: 160 TGREGDDGEDDDEEGSDGEEDG----------AKKKAKKKRQRKPESTLEKNFEA 204
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 28.7 bits (64), Expect = 0.67
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
+K+K +K K KK KKN
Sbjct: 357 ARKRKGDRKGVSHKAKKGGKKNQ 379
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 28.6 bits (64), Expect = 0.67
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKK 43
EEE +EE EE + + DL L + K ++
Sbjct: 184 SEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARR 223
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 28.7 bits (65), Expect = 0.68
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKK 45
E E E+ EE EE E+ YL KK+KKKKKKKK
Sbjct: 413 ENAESLEDLEEIREELIEQ------GYLKEKKRKKKKKKKK 447
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 28.6 bits (64), Expect = 0.73
Identities = 3/22 (13%), Positives = 13/22 (59%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
++E + +++++E+ E +
Sbjct: 249 SDDEGDGSDDDDDEDAIESDLD 270
Score = 27.0 bits (60), Expect = 2.2
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 1 MGKGEEEEEEEEEEEEE--------EEEEEEDL 25
G G +++++E+ E + +E+ EDL
Sbjct: 252 EGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDL 284
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 27.6 bits (62), Expect = 0.73
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL 25
++EE++EE EEE ++D+
Sbjct: 80 AAAAAAAKKEEKKEESEEESDDDM 103
Score = 26.5 bits (59), Expect = 2.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHM 27
++EE++EE EEE D M
Sbjct: 78 AAAAAAAAAKKEEKKEESEEESDDDM 103
Score = 25.3 bits (56), Expect = 5.0
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHM 27
++EE++EE EEE +++ +
Sbjct: 82 AAAAAKKEEKKEESEEESDDDMGFGL 107
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation
termination are recognised and rapidly degraded by
eukaryotic cells through a pathway known as
nonsense-mediated mRNA decay. In Saccharomyces
cerevisiae, three trans-acting factors (Upf1 to Upf3)
are required for nonsense-mediated mRNA decay.
Length = 171
Score = 28.1 bits (63), Expect = 0.74
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+EE EE+E++E +EEE
Sbjct: 12 EDEELPEEDEDDESSDEEEV 31
Score = 28.1 bits (63), Expect = 0.76
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL 25
G+ +EE EE+E++E +EEE DL
Sbjct: 10 GEEDEELPEEDEDDESSDEEEVDL 33
Score = 26.6 bits (59), Expect = 2.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
+E++E +EEE + ++E+D
Sbjct: 19 EDEDDESSDEEEVDLPDDEQD 39
Score = 26.2 bits (58), Expect = 3.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E EE+E++E +EEE +
Sbjct: 14 EELPEEDEDDESSDEEEVDLP 34
Score = 26.2 bits (58), Expect = 4.1
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE+E++E +EEE + +++
Sbjct: 18 EEDEDDESSDEEEVDLPDDE 37
Score = 26.2 bits (58), Expect = 4.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE+E++E +EEE + D
Sbjct: 16 LPEEDEDDESSDEEEVDLPD 35
Score = 25.4 bits (56), Expect = 6.9
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
++E +EEE + ++E++E+
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEE 41
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 28.6 bits (64), Expect = 0.77
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPV 59
K K KKK K K KK KK+ P+
Sbjct: 763 KAAKTVKKKSKAKSKKTTKKRAGPL 787
Score = 27.5 bits (61), Expect = 1.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQVV 78
A K K K KKK K K KK +Y +++ +G + V
Sbjct: 758 ASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSPALAAMIGAEPV 803
Score = 25.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
KK K KKK K K K K
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKK 771
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.6 bits (64), Expect = 0.78
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
+ + E + + EE+ M A ++ K+ K+ + K K
Sbjct: 896 QNHHKTEALSQNNKYNEEKSAQERM---PGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 28.3 bits (63), Expect = 0.81
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 37 KKKKKKKKKKKKKKKKKKKN 56
++ K+KKKKK KKKK K+
Sbjct: 86 NQENKQKKKKKDKKKKSPKS 105
Score = 27.9 bits (62), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 38 KKKKKKKKKKKKKKKKKKNNPV 59
K+KKKKK KKKK K N V
Sbjct: 90 KQKKKKKDKKKKSPKSLLLNFV 111
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 35 KKKKKKKKKKKKKKKKKKK 53
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 36 KKKKKKKKKKKKKKKKKKK 54
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 26.0 bits (57), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 39 KKKKKKKKKKKKKKKKKNNP 58
++ K+KKKKK KKKK
Sbjct: 86 NQENKQKKKKKDKKKKSPKS 105
Score = 25.6 bits (56), Expect = 6.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 38 KKKKKKKKKKKKKKKKKKNN 57
++ K+KKKKK KKKK +
Sbjct: 86 NQENKQKKKKKDKKKKSPKS 105
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 28.5 bits (65), Expect = 0.82
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
+E+EEE+EE+EE EEE + L +++ K+ K K + + ++P
Sbjct: 477 GKEDEEEKEEKEEAEEEFKPL--------LERLKEALGDKVKDVRLSHRLTDSPAC 524
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein
is found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 28.1 bits (63), Expect = 0.87
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKK 42
G+++EEE+E+E E+E++ ++ KKK K
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGK 52
Score = 25.8 bits (57), Expect = 6.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKK 43
+++EEE+E+E E+E++ + + KKK K
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGK 52
Score = 25.4 bits (56), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKK 44
+++EEE+E+E E+E++ A KKK K
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGK 52
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 28.4 bits (64), Expect = 0.88
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKK--KKNNPVVYI 62
LA K +K K K+ K+ K+ YI
Sbjct: 323 VLATLSLPTKAEKNKYSIKEIKRRLKEKGFAGYI 356
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 28.2 bits (63), Expect = 0.93
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL---HMCL 29
+ + EE +E+EEE+ E+E + MCL
Sbjct: 58 KEEDAGEEGDEDEEEQGEDEHFSILGHPMCL 88
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 28.3 bits (63), Expect = 0.97
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
EEE + + +EE EE A++ K +K + K + K+K K
Sbjct: 430 EEEHQIYRKLQEERRLREE---------AIRAKAEKTARMKAEMKEKTLKM 471
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 28.0 bits (63), Expect = 0.98
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLN 30
+E E EE E EE +EE + LN
Sbjct: 242 ADEAEPEEAETEEAQEEAAEKPPSLN 267
Score = 27.3 bits (61), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEE 23
+ + +E E EE E EE +EE E
Sbjct: 239 LAEADEAEPEEAETEEAQEEAAE 261
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E +E E EE E EE +EE
Sbjct: 240 AEADEAEPEEAETEEAQEEAA 260
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 27.9 bits (63), Expect = 1.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEE 23
+G+ EEEEEE EEEE + E
Sbjct: 224 LGEEEEEEEEVEEEEAQASPAAE 246
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 27.9 bits (62), Expect = 1.1
Identities = 8/41 (19%), Positives = 23/41 (56%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKK 45
+ ++E+E E+ E+ E + + ++ Y+ + +K K ++
Sbjct: 255 DSDDEDEHGEDSEDGETKPESYITSEYIERISEIRKMKDER 295
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 28.2 bits (62), Expect = 1.2
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 33 AMKKKKKKKKKKKKKKKK---KKKKKNNPVVYIYALLFSISGYLGVQVVLT 80
+MKK+ + + KK + K ++ +KN VYI ++ S++ Y + L+
Sbjct: 409 SMKKRVRSRAKKFGEAAKSGVRRYRKNIKFVYIPPVMASLNAYAALMASLS 459
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 9 EEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
+E ++ E E AM + + ++ K KKK N
Sbjct: 348 KEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNE 397
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 26.9 bits (60), Expect = 1.2
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
K EE+++E+E E+++E +E+D
Sbjct: 79 AAKEPEEDDKEDESEDDDESDEDD 102
Score = 26.9 bits (60), Expect = 1.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
E EE+++E+E E+++E +ED
Sbjct: 78 QAAKEPEEDDKEDESEDDDESDED 101
Score = 26.2 bits (58), Expect = 2.7
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ EE+++E+E E+++E +E++D
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDD 103
Score = 25.0 bits (55), Expect = 8.1
Identities = 7/22 (31%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ ++E+E E+++E +E+++E+D
Sbjct: 85 EDDKEDESEDDDESDEDDDEDD 106
Score = 25.0 bits (55), Expect = 8.2
Identities = 7/22 (31%), Positives = 19/22 (86%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ +++E+E E+++E +E+++ED
Sbjct: 84 EEDDKEDESEDDDESDEDDDED 105
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNNP 58
A +K+K ++++K K K +KK P
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKRKP 149
Score = 25.7 bits (57), Expect = 5.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNNP 58
A +K+K ++++K K K +KK+
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 25.7 bits (57), Expect = 6.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNP 58
K ++++K K K +KK+K +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQK 153
Score = 25.3 bits (56), Expect = 7.5
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNP 58
KK++ +K+K ++++K K P
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAP 143
Score = 25.3 bits (56), Expect = 8.2
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPV 59
KK++ +K+K ++++K K
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPKAP 143
Score = 25.3 bits (56), Expect = 9.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNP 58
K+K ++++K K K +KK+K
Sbjct: 128 KEKAPRRERKPKPKAPRKKRKPRA 151
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 27.7 bits (62), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKK 54
LA KKK + KKK K KK +
Sbjct: 152 LAEKKKPRSKKKSSKNSKKLRID 174
Score = 27.7 bits (62), Expect = 1.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKN 56
+ +KKK + KKK K KK + +
Sbjct: 152 LAEKKKPRSKKKSSKNSKKLRID 174
Score = 27.0 bits (60), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+ +KKK + KKK K KK +
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLR 172
>gnl|CDD|131894 TIGR02847, CyoD, cytochrome o ubiquinol oxidase subunit IV.
Cytochrome o terminal oxidase complex is the component
of the aerobic respiratory chain which reacts with
oxygen, reducing it to water with the concomitant
transport of 4 protons across the membrane. Also known
as the cytochrome bo complex, cytochrome o ubiquinol
oxidase contains four subunits, two heme b cofactors and
a copper atom which is believed to be the oxygen active
site. This complex is structurally related to the
cytochrome caa3 oxidases which utilize cytochrome c as
the reductant and contain heme a cofactors, as well as
the intermediate form aa3 oxidases which also react
directly with quinones as the reductant [Energy
metabolism, Electron transport].
Length = 96
Score = 26.8 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 68 SISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFV 107
S+ YL + VL+++ T F V T K +T+V+ V
Sbjct: 3 SLKSYL-IGFVLSVILTAIPFGLVMSGTLSKGLTLVIIIV 41
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 27.8 bits (63), Expect = 1.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G+ E EEEEEE EEEEE+
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEE 246
Score = 27.1 bits (61), Expect = 2.0
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
EEEEEE EEEEEEEEEEE +
Sbjct: 232 AAEEEEEEAEEEEEEEEEEEAE 253
Score = 26.7 bits (60), Expect = 2.5
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
EE EEEEEEEEEEE EE E
Sbjct: 237 EEEAEEEEEEEEEEEAEEAEA 257
Score = 26.7 bits (60), Expect = 3.0
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+ EEEE EEEEEEEEEEE EE
Sbjct: 233 AEEEEEEAEEEEEEEEEEEAEE 254
Score = 26.7 bits (60), Expect = 3.2
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEE 23
+ EEEEEEEEEEE EE E E
Sbjct: 236 EEEEAEEEEEEEEEEEAEEAEAE 258
Score = 26.3 bits (59), Expect = 3.5
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEE EEEEEEEEEEE E+
Sbjct: 235 EEEEEAEEEEEEEEEEEAEE 254
Score = 26.3 bits (59), Expect = 3.9
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
E EEEEEE EEEEEEEEE+
Sbjct: 229 LAEAAEEEEEEAEEEEEEEEEE 250
Score = 25.5 bits (57), Expect = 7.2
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G+ E EEEEEE EEEEEEEE+
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEE 249
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
E EE EE+ E +E + N +++ ++ +K K ++
Sbjct: 15 EPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTTPYMTKYER 65
Score = 24.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
MG +E E E EE EE+ E +
Sbjct: 7 MGYEDEPSEPEIEEGAEEDSESNN 30
Score = 24.8 bits (54), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEE 23
M G E+E E E EE EE+ E
Sbjct: 5 MDMGYEDEPSEPEIEEGAEEDSE 27
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 27.7 bits (62), Expect = 1.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 43 KKKKKKKKKKKKKNNPVVYIYALLFSI 69
+KK+ + K V I A+LF +
Sbjct: 370 ILRKKRPDLPRIKGRWPVAILAILFIL 396
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 27.6 bits (61), Expect = 1.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 6 EEEEEEEEEEEEEEEEEED 24
E EE E EEE E+ ED
Sbjct: 376 ENRNPEESEHEEEVEDYED 394
Score = 26.9 bits (59), Expect = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
EE E EEE E+ E+E+ H
Sbjct: 377 NRNPEESEHEEEVEDYEDENDH 398
Score = 26.1 bits (57), Expect = 5.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
K E E EE E EEE E+ +
Sbjct: 372 KMEIENRNPEESEHEEEVEDYE 393
Score = 26.1 bits (57), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E EE E EEE E+ E++
Sbjct: 376 ENRNPEESEHEEEVEDYEDE 395
Score = 25.7 bits (56), Expect = 7.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKK 45
EE E EEE E+ E+E + +C + + +K
Sbjct: 380 PEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNS 420
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 27.9 bits (62), Expect = 1.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E+ E EE E +E EE++
Sbjct: 244 NEDSEAGREESEGSDESEEDE 264
Score = 26.7 bits (59), Expect = 3.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E+ E EE E +E EED
Sbjct: 243 NNEDSEAGREESEGSDESEED 263
Score = 26.7 bits (59), Expect = 3.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ E EE E +E EE+E +
Sbjct: 244 NEDSEAGREESEGSDESEEDEAE 266
Score = 26.0 bits (57), Expect = 6.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHM 27
+G +E EE+E E + E EE ++
Sbjct: 254 SEGSDESEEDEAEATDGEGEEGEMDA 279
Score = 25.6 bits (56), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
G EE E +E EE+E E +
Sbjct: 250 GREESEGSDESEEDEAEATDG 270
Score = 25.6 bits (56), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 2 GKGEEEEEEEEEEEE------EEEEEEED 24
G+ E E +E EE+E E EE E D
Sbjct: 250 GREESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 25.6 bits (56), Expect = 9.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
+ E EE E +E EE+E
Sbjct: 246 DSEAGREESEGSDESEEDEAEA 267
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 27.6 bits (61), Expect = 1.5
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 1 MGKGEEEEEEEEE----EEEEEEEEEEDLHMCLNYLA 33
+G EE++EEE + EE++ + + H+ + +
Sbjct: 9 IGTSEEDDEEEMDMDVKEEDDGDRRNREKHIPVTGMV 45
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 27.7 bits (62), Expect = 1.5
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
+ EE+E E+ EE EE + A KK K + K +K K +K +
Sbjct: 167 VNDISEEQEFEKFEEAINEEVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIK 224
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 27.6 bits (61), Expect = 1.5
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALL 66
N+L +K+KKK K++K+ KKK++ + YAL+
Sbjct: 91 NHLEEEKEKKKNLNKEEKEAKKKERAKREYPFNYALV 127
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 27.4 bits (61), Expect = 1.5
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
+K K K KK KK
Sbjct: 191 ASSGDEKSPKSKAAPKKAGKKM 212
Score = 27.0 bits (60), Expect = 2.1
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 33 AMKKKKKKKKKKKKKKKKKKK 53
A +K K K KK KK
Sbjct: 191 ASSGDEKSPKSKAAPKKAGKK 211
Score = 26.3 bits (58), Expect = 3.8
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 34 MKKKKKKKKKKKKKKKKKKKK 54
+K K K KK KK
Sbjct: 191 ASSGDEKSPKSKAAPKKAGKK 211
Score = 25.5 bits (56), Expect = 6.8
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
+K K K KK K
Sbjct: 190 TASSGDEKSPKSKAAPKKAGK 210
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 26.8 bits (59), Expect = 1.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDL 25
E E+ EE +EEEEEEE+ED
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 24.9 bits (54), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
E E+ EE +EEEEEEE++
Sbjct: 78 TAEPAEKAEEAKEEEEEEEDE 98
Score = 24.9 bits (54), Expect = 9.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDL 25
+ E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDFGF 102
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 27.3 bits (60), Expect = 1.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
+ + +EE+EEEE EEE ++EE
Sbjct: 217 EKQPQEEQEEEEVEEEAKQEE 237
Score = 26.9 bits (59), Expect = 2.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEE 23
+ +EE+EEEE EEE ++EE +
Sbjct: 218 KQPQEEQEEEEVEEEAKQEEGQ 239
Score = 25.8 bits (56), Expect = 5.6
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 3 KGEEEEEEEEEEEEEEEEE 21
K EE++ +EE+EEEE EEE
Sbjct: 214 KTEEKQPQEEQEEEEVEEE 232
Score = 25.8 bits (56), Expect = 6.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+EEEE EEE ++EE + D
Sbjct: 223 EQEEEEVEEEAKQEEGQGTD 242
Score = 25.4 bits (55), Expect = 8.6
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 6 EEEEEEEEEEEEEEEEE 22
EE++ +EE+EEEE EEE
Sbjct: 216 EEKQPQEEQEEEEVEEE 232
Score = 25.4 bits (55), Expect = 8.6
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 7 EEEEEEEEEEEEEEEEE 23
EE++ +EE+EEEE EEE
Sbjct: 216 EEKQPQEEQEEEEVEEE 232
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
E E EE EEE EE+L
Sbjct: 39 PPEPPEPEEVPEEEAAPLTEEEL 61
Score = 26.0 bits (58), Expect = 5.1
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E E E EE EEE
Sbjct: 34 EPAAPPPEPPEPEEVPEEEAA 54
Score = 25.7 bits (57), Expect = 6.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E EE EEE EEE E +
Sbjct: 44 EPEEVPEEEAAPLTEEELEAI 64
>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY
family. Rfam model RF00080 describes a structured RNA
element called the yybP-ykoY leader, or SraF, which may
precede one or several genes in a genome. Members of
this highly hydrophobic protein family often are
preceded by a yybP-ykoY leader, which may serve as a
riboswitch. From the larger group of TerC homologs
(pfam03741), this subfamily contains proteins YceF and
YkoY from Bacillus subtilis. A transport function is
proposed.
Length = 215
Score = 27.2 bits (61), Expect = 1.6
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
L YLA+K +KKKK K+ ++ +KKK +
Sbjct: 66 LLYLAIKHFRKKKKGKEDEEAEKKKAHSG 94
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 27.6 bits (61), Expect = 1.6
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 6 EEEEEEEEEEEEEEEEEED 24
EE +E++EEEE EEEEE D
Sbjct: 333 EETQEQQEEEENEEEEEND 351
Score = 26.1 bits (57), Expect = 5.2
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 5 EEEEEEEEEEEEEEEEE 21
EE +E++EEEE EEEEE
Sbjct: 333 EETQEQQEEEENEEEEE 349
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 27.7 bits (62), Expect = 1.6
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
+ E+ ++ +D KKK K K K KKK + +
Sbjct: 47 KTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDEL 100
Score = 26.1 bits (58), Expect = 5.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNNP 58
A K KKK K + KK +K N
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAEKKNA 111
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 27.5 bits (62), Expect = 1.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 27 MCLNYLAMKKKKKKKKKKKKK 47
+ L +K KK KK KK K
Sbjct: 335 LALTDAWQRKSKKYKKNKKNK 355
Score = 26.0 bits (58), Expect = 5.3
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 14/40 (35%)
Query: 46 KKKKKKKKKKNNPVVYIYA------------LLFSISGYL 73
+K KK KK K N + L+F SG+L
Sbjct: 343 RKSKKYKKNKKNKWTKALSIFVTFHLVCFGFLIF--SGFL 380
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 36 KKKKKKKKKKKKK 48
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 37 KKKKKKKKKKKKK 49
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 38 KKKKKKKKKKKKK 50
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 39 KKKKKKKKKKKKK 51
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 40 KKKKKKKKKKKKK 52
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 41 KKKKKKKKKKKKK 53
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 42 KKKKKKKKKKKKK 54
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 43 KKKKKKKKKKKKK 55
+K KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 27.3 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+ K EEEEEE++ E E+E+EE++
Sbjct: 283 LEKAEEEEEEDDYSESEDEDEEDE 306
Score = 27.3 bits (61), Expect = 1.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHM 27
E E+E+EE+E+EEEEE++D
Sbjct: 295 YSESEDEDEEDEDEEEEEDDDEGD 318
Score = 27.3 bits (61), Expect = 2.0
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEE++ E E+E+EE+ED
Sbjct: 288 EEEEEDDYSESEDEDEEDEDE 308
Score = 26.5 bits (59), Expect = 3.3
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ EEEE++ E E+E+EE+E++
Sbjct: 287 EEEEEEDDYSESEDEDEEDEDE 308
Score = 26.2 bits (58), Expect = 4.3
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE++ E E+E+EE+E+EE+
Sbjct: 291 EEDDYSESEDEDEEDEDEEE 310
Score = 26.2 bits (58), Expect = 4.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ + E E+E+EE+E+EEEEED
Sbjct: 291 EEDDYSESEDEDEEDEDEEEEED 313
Score = 26.2 bits (58), Expect = 4.7
Identities = 10/20 (50%), Positives = 18/20 (90%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+E+EE+E+EEEEE+++E +
Sbjct: 300 DEDEEDEDEEEEEDDDEGDK 319
Score = 25.8 bits (57), Expect = 6.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEE++ E E+E+EE+E+E+
Sbjct: 290 EEEDDYSESEDEDEEDEDEE 309
Score = 25.4 bits (56), Expect = 9.2
Identities = 10/20 (50%), Positives = 18/20 (90%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
E+EE+E+EEEEE+++E ++
Sbjct: 300 DEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 27.5 bits (62), Expect = 1.7
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E E E++ EE E +E E L +++KK+K ++++ K ++ +K+
Sbjct: 529 ERELEQKAEEAEALLKEAEKLK-----EELEEKKEKLQEEEDKLLEEAEKE 574
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 27.3 bits (61), Expect = 1.7
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNN 57
L + ++++ KKKKKKKKKK KKNN
Sbjct: 171 LLKARLEEERAKKKKKKKKKKTKKNN 196
Score = 25.4 bits (56), Expect = 8.0
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
EEE E + EEE + KKKKKKKKK KK +
Sbjct: 164 PTEEEVELLKARLEEERAK------------KKKKKKKKKTKKNNATGSSAEATVSS 208
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 26.6 bits (59), Expect = 1.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNNP 58
L KKKKKKKKK + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATA 48
Score = 25.0 bits (55), Expect = 4.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVV 60
KKKKKKKKKK + K
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKAT 47
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 27.2 bits (60), Expect = 1.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
K KKK K KK KKK+ K++ N
Sbjct: 210 KYSYKKKLKSKKLKKKQAKREAN 232
Score = 25.3 bits (55), Expect = 8.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K K KKK K KK KKK+ K
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAK 228
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 27.3 bits (61), Expect = 1.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH---------MCLNYLAMKKKKKKKKKKKKK--KKKKKK 53
E E+E++E EEE+ +E DL + K+K+K++ K + KK+K+K
Sbjct: 593 AEFEKEKKEVIEEEDPKEIDLTLPGWGSWAGDGIKKRKKKRKRKRRFLTKIEGVKKEKRK 652
Query: 54 KKNNPVVYI 62
K V I
Sbjct: 653 DKKLKNVII 661
Score = 26.6 bits (59), Expect = 3.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 9 EEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKK 48
+++E +EE++++ED H L +KKK +KKK
Sbjct: 1 MSDDDESDEEDDDDEDKHSKLLSAISSLGGEKKKDEKKKA 40
Score = 26.6 bits (59), Expect = 3.8
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKK 44
+++E +EE++++E++ L ++ L +KKK +KKK
Sbjct: 1 MSDDDESDEEDDDDEDKHSKLLSAISSLGGEKKKDEKKKA 40
Score = 26.6 bits (59), Expect = 4.2
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 1 MGKGEEEEEEEEEEEEE----EEEEEEDLHMCLNYLAMKKKKKKKK-------KKKKKKK 49
M + E ++EE + E E E E EE+ N KK ++K K+ + KK
Sbjct: 379 MQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKK 438
Query: 50 KKKKKKNNP 58
KK+ KN
Sbjct: 439 LKKENKNEF 447
Score = 25.8 bits (57), Expect = 7.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
GK EE+E+E+ + EEE+E++D
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDD 342
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 27.3 bits (61), Expect = 1.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVVYIYA 64
+K KK KK KK+K+K++ P +
Sbjct: 227 RKAPKKVAKKVAAAKKRKQKRSPPPPFNMV 256
Score = 26.2 bits (58), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVVY 61
K+K KK KK KK+K+K +P
Sbjct: 226 KRKAPKKVAKKVAAAKKRKQKRSPPPP 252
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 27.3 bits (61), Expect = 1.8
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEEEE EEEEE +E ED
Sbjct: 162 PEEEEEEIAEEEEEVKEPED 181
Score = 26.2 bits (58), Expect = 4.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 6 EEEEEEEEEEEEEEEEEEDLH 26
+ E EEEEEE EEEEE
Sbjct: 158 DLEPPEEEEEEIAEEEEEVKE 178
Score = 25.8 bits (57), Expect = 6.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
E EEEEEE EEEEE +E
Sbjct: 160 EPPEEEEEEIAEEEEEVKE 178
Score = 25.4 bits (56), Expect = 8.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ E EEEEEE EEEEE
Sbjct: 158 DLEPPEEEEEEIAEEEEEVK 177
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 27.1 bits (59), Expect = 1.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
G +++ + EEEEEE+EEE++ H C K KK +++ + KK P+
Sbjct: 208 GPLDKDPRDPEEEEEEKEEEKQQPHRC-------KPKKPARRRDPSPESPPKKGAIPI 258
>gnl|CDD|220816 pfam10592, AIPR, AIPR protein. This family of proteins was
identified in as an abortive infection phage resistance
protein often found in restriction modification system
operons.
Length = 300
Score = 27.4 bits (61), Expect = 1.9
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIY 63
+ + + + EED + + +A + K +K KKKKK N V Y
Sbjct: 189 KRFADLKGIYKIIFNDHLEEDYY--KSIVAKYRLIFKALEKIIKKKKKYFGGANIVAYTI 246
Query: 64 ALLFSISGYLGVQVVLTL 81
+ G + + +
Sbjct: 247 LAGAVLLILAGFRDLDEI 264
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex
which functions in messenger ribonucleoprotein
metabolism and plays a role in preventing the
transcription-associated genetic instability. Tho2,
along with four other subunits forms THO.
Length = 296
Score = 27.3 bits (61), Expect = 1.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 19 EEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
++E E L + L KKKK+KK+ K KK
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKK 66
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 27.4 bits (61), Expect = 2.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 6 EEEEEEEEEEEEEEEEEED 24
+ E EE E E+ E EED
Sbjct: 399 QREAEERLEAEQAERAEED 417
Score = 26.7 bits (59), Expect = 3.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ E EE E E+ E EE+
Sbjct: 399 QREAEERLEAEQAERAEEDA 418
Score = 26.7 bits (59), Expect = 3.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEE + E EE E E+ E
Sbjct: 394 EEEALQREAEERLEAEQAER 413
Score = 26.3 bits (58), Expect = 4.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E EE E E+ E EE+ L
Sbjct: 400 REAEERLEAEQAERAEEDARL 420
Score = 26.3 bits (58), Expect = 4.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
EE + E EE E E+ E
Sbjct: 395 EEALQREAEERLEAEQAERAEE 416
Score = 26.3 bits (58), Expect = 4.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EE E E+ E EE+ +L
Sbjct: 403 EERLEAEQAERAEEDARLREL 423
Score = 26.3 bits (58), Expect = 4.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+E E+E+E EE + EEE+
Sbjct: 427 PEDEFEDEDELEEAQPEEEE 446
Score = 25.9 bits (57), Expect = 5.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
EEEE + E EE E E+
Sbjct: 393 EEEEALQREAEERLEAEQA 411
Score = 25.9 bits (57), Expect = 5.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 6 EEEEEEEEEEEEEEEEEEDL 25
EEEE + E EE E E+
Sbjct: 393 EEEEALQREAEERLEAEQAE 412
Score = 25.5 bits (56), Expect = 8.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E+E E+E+E EE + EEEE+
Sbjct: 428 EDEFEDEDELEEAQPEEEEEA 448
Score = 25.5 bits (56), Expect = 8.8
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+ E EE+ E ED
Sbjct: 410 QAERAEEDARLRELYPLPED 429
Score = 25.1 bits (55), Expect = 9.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
+ EEEE + E EE E E
Sbjct: 391 QREEEEALQREAEERLEAE 409
>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase
component YidC; Provisional.
Length = 357
Score = 27.3 bits (61), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQV 77
L KK K++ K+K+ KK+ K ++ I + F + GVQ+
Sbjct: 276 ILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQI 322
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 26.9 bits (60), Expect = 2.0
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
KG +++ +E + +E+EEE+D
Sbjct: 188 KGAPDDDLDEYDYGDEDEEEDD 209
Score = 26.9 bits (60), Expect = 2.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLA-----------MKKKKKKKKKK 44
M + E E E E EEE E++ + L LA K K K+++K
Sbjct: 134 MTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEK 188
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 27.0 bits (60), Expect = 2.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNNPV 59
+ K +K+ K+K +KKK N +
Sbjct: 6 KNRSSNYKVNRKRLKRKDRKKKINII 31
Score = 26.2 bits (58), Expect = 3.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
+KKKK + K +K+ K+K+
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDR 24
Score = 26.2 bits (58), Expect = 4.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVV 60
K +K+ K+K +KKK NP++
Sbjct: 11 NYKVNRKRLKRKDRKKKINIIGNPII 36
Score = 25.1 bits (55), Expect = 9.8
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVV 60
K + K +K+ K+K +KK ++
Sbjct: 6 KNRSSNYKVNRKRLKRKDRKKKINII 31
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 27.1 bits (60), Expect = 2.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 9 EEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+ E+EE ++E+ L L + +KK++ + + KK+ + +K+N
Sbjct: 721 GDSEDEEGMDDEQMMRLDTYLAQIFKEKKERIQAGGETKKEAQSQKQN 768
Score = 27.1 bits (60), Expect = 2.6
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 13 EEEEEEEEEEEDLHMCLN-YLA--MKKKKKKKKKKKKKKKKKKKKKNNPV 59
+ E+EE +++ M L+ YLA K+KK++ + + KK+ + +K N +
Sbjct: 721 GDSEDEEGMDDEQMMRLDTYLAQIFKEKKERIQAGGETKKEAQSQKQNVI 770
Score = 26.8 bits (59), Expect = 3.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ E E E + E+ EE+E+E+D
Sbjct: 668 IEDSESESESDGEDGEEDEQEDD 690
Score = 26.4 bits (58), Expect = 4.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E E E + E+ EE+E+E++
Sbjct: 672 ESESESDGEDGEEDEQEDDA 691
Score = 25.2 bits (55), Expect = 9.5
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDL 25
+ +GEEE+E++ EE +++E+E E +
Sbjct: 644 LFEGEEEDEDDLEETDDDEDECEAI 668
>gnl|CDD|220223 pfam09405, Btz, CASC3/Barentsz eIF4AIII binding. This domain is
found on CASC3 (cancer susceptibility candidate gene 3
protein) which is also known as Barentsz (Btz). CASC3
is a component of the EJC (exon junction complex) which
is a complex that is involved in post-transcriptional
regulation of mRNA in metazoa. The complex is formed by
the association of four proteins (eIF4AIII, Barentsz,
Mago, and Y14), mRNA, and ATP. This domain wraps around
eIF4AIII and stacks against the 5' nucleotide.
Length = 116
Score = 26.6 bits (59), Expect = 2.1
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 15/58 (25%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
K E E + E E +ED K++K+++ +K + NP
Sbjct: 1 KVESERQSGRTPSAEPTEPKED---------------KERKRREHEKYDDEDDENPAF 43
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 27.1 bits (60), Expect = 2.2
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 11 EEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E + + E+E + + + + K++K++K+KK KK+
Sbjct: 119 ELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 26.7 bits (59), Expect = 3.1
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 40 KKKKKKKKKKKKKKKKNNPV 59
+ K++K++K+KK KK++ PV
Sbjct: 143 RSKRRKRRKRKKNKKQDLPV 162
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 27.1 bits (60), Expect = 2.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
E E E E+E EEEEEE+ D+ L + +K + ++ + +++++ P
Sbjct: 64 ETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRREGKP 117
Score = 26.3 bits (58), Expect = 3.4
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE E E E+E EEEEEED
Sbjct: 62 SEETEAEVEDEGGEEEEEED 81
Score = 26.3 bits (58), Expect = 3.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE E E E+E EEEEEE+
Sbjct: 63 EETEAEVEDEGGEEEEEEDA 82
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 27.1 bits (60), Expect = 2.2
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE--DLHMCLNYLAMKK 36
K EE + EE +EE EEEE+ +L+ +N A KK
Sbjct: 290 KSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 26.7 bits (59), Expect = 3.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEE 23
K EE++EE+ EE + EE +EE
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEE 302
Score = 25.6 bits (56), Expect = 8.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ ++EE+ EE + EE +EE E+
Sbjct: 283 KEEKDEEKSEEVKTEEVDEEFEE 305
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain
in Streptococcal C5a peptidases. Streptococcal C5a
peptidase (SCP), is a highly specific protease and
adhesin/invasin. The subtilisin-like protease domain
is located at the N-terminus and contains a
protease-associated domain inserted into a loop. There
are three fibronectin type III (Fn) domains at the
C-terminus. SCP binds to integrins with the help of
Arg-Gly-Asp motifs which are thought to stabilize
conformational changes required for substrate binding.
Peptidases S8 or Subtilases are a serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members
have been shown to bind up to 4 ions via binding sites
with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra-
and extracellular, some function at extreme
temperatures and pH values.
Length = 346
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNNPVVYIY 63
K ++ + KKKK K N V + Y
Sbjct: 36 KAKYSEEFEAKKKKAGIGYGKYYNEKVPFAY 66
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 26.4 bits (59), Expect = 2.3
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 4 GEEEEEE----EEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
GEE +E E +E +EE+ + A++ ++ K+++++ +++KK
Sbjct: 77 GEELKELAEWWTEFQEADEEQRRAMIE------ALQGREGGKRRRRRPRRRKK 123
Score = 26.0 bits (58), Expect = 3.0
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 5 EEEEEEEEE-----EEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKK 49
E EE +E E +E +EE+ M + K+++++ +++KK
Sbjct: 74 AEAGEELKELAEWWTEFQEADEEQRRAMIEALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 27.0 bits (59), Expect = 2.4
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
K EE++++ EE ++ EE+E+ L A + KK ++ KKK+ ++KKK ++
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Score = 25.9 bits (56), Expect = 6.2
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+++E EE+++ EE ++ EE+ + A K ++ KKK ++ KK ++ +KK
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 25.9 bits (56), Expect = 6.2
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
K + EE ++ +E +++ EE + A + KK + K + + + +
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional.
Length = 116
Score = 26.6 bits (58), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALL 66
KK KK K KKK K K +YIY +L
Sbjct: 5 PSKKPAKKAAKGAKKKGSKSKTETYKIYIYKVL 37
>gnl|CDD|225436 COG2881, COG2881, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 181
Score = 26.6 bits (59), Expect = 2.6
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 59 VVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTTCRKAVTIVLSFVF 108
I L ++S L +L T F + V +L+ +
Sbjct: 36 FALISVALSALSSLLAGPGILPATGTSSGFSFAMILLA-VLVAFILAILA 84
>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein. GAAP (or
transmembrane BAX inhibitor motif containing 4) is a
regulator of apoptosis that is related to the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. Human GAAP has been linked
to the modulation of intracellular fluxes of Ca(2+), by
suppressing influx from the extracellular medium and
reducing release from intracellular stores. A viral
homolog (vaccinia virus vGAAP) acts similar to its human
counterpart in inhibiting apoptosis.
Length = 233
Score = 26.8 bits (60), Expect = 2.6
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 25/87 (28%)
Query: 53 KKKNNPVVYIYALLFSISGYLGVQVVLTLVK----------TCGAFVAVTVTTCRKA--- 99
K+ ++PV I LF++ V +V++ T G FV +T T +
Sbjct: 86 KRHSHPVNLILLSLFTLCEAYTVGLVVSFYDGKIVLQALILTLGVFVGLTAYTFQTKRDF 145
Query: 100 ------------VTIVLSFVFFAKPFT 114
I+L+ +F P++
Sbjct: 146 SSFGALLFILLWALILLALIFQFFPYS 172
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription
factor TFIIE alpha. TFIIE is compiled of two subunits,
alpha and beta. This family of proteins are the C
terminal domain of the alpha subunit of the protein
which is the largest subunit and contains several
functional domains which are important for basal
transcription and cell growth. The C terminal end of
the protein binds directly to the amino-terminal PH
domain of p62/Tfb1 (of IIH) which is involved in the
recruitment of the general transcription factor IIH to
the transcription preinitiation complex. P53 competes
for the same binding site as TFIIE alpha which shows
their structural similarity. Like p53, TFIIE alpha
336-439 can activate transcription in vivo.
Length = 86
Score = 25.9 bits (57), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHM 27
+EEE++E++E EE E+E M
Sbjct: 20 GQSVDEEEDDEDDEFEEVEDEPTVM 44
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 26.4 bits (59), Expect = 2.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5 EEEEEEEEEEEEEEEEEEED--------LHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
++ EEE +EE + E +ED + K ++++K K+KKKKKKK+
Sbjct: 31 DKREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Query: 57 N 57
N
Sbjct: 91 N 91
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 25.0 bits (55), Expect = 2.7
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 3 KGEEEEEEEEEEEEEEEEEEE 23
K E+EEE E+EEE EE+ E +
Sbjct: 25 KREDEEENEDEEEGEEQSEVK 45
Score = 25.0 bits (55), Expect = 3.2
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEE+ E+EEE E+EEE EE
Sbjct: 22 EEEKREDEEENEDEEEGEEQ 41
>gnl|CDD|235222 PRK04125, PRK04125, murein hydrolase regulator LrgA; Provisional.
Length = 141
Score = 26.5 bits (59), Expect = 2.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNN 57
+ K +K+K+ KK+KK K K +++
Sbjct: 115 FILGKTEKEKEDKKEKKVKIKGRQHG 140
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 26.8 bits (59), Expect = 2.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 4 GEEEEEEEEEEEEEEEEEEED 24
GE E E ++ EE +D
Sbjct: 120 GETESTEAQDSEEPGSCPTQD 140
Score = 25.6 bits (56), Expect = 6.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+G E E E ++ EE
Sbjct: 115 LGYPTGETESTEAQDSEEPGSCPT 138
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 26.2 bits (58), Expect = 2.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKKKK 55
Y+ K +KK+K +KK++ KK K
Sbjct: 74 YIPPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 26.7 bits (59), Expect = 2.7
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
KG E + +++ E+ + L +KK ++KK++KKK KKKK
Sbjct: 27 KGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 27.0 bits (59), Expect = 2.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 10 EEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
+ ++ + +EEEEE+ L M + M K+KK KK K KK+++
Sbjct: 529 KNKKRKVDEEEEEKKLKM----IMMSNKQKKLYKKMKYSNAKKEEQAE 572
Score = 26.6 bits (58), Expect = 3.3
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
G+ +++++EE + ++E E E + + A K K K KK+K +++++KK
Sbjct: 490 GEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKK 543
Score = 25.4 bits (55), Expect = 8.1
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCL-----NYLAMKKKKKKKKKKKKKKKKKKKKK 55
GEE+++++EE + ++E E E + + K K KK+K +++++KK K
Sbjct: 490 GEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKM 546
Score = 25.4 bits (55), Expect = 9.3
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E EE+++++EE + +++L + + + + K K K KK+K
Sbjct: 486 EHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVD 536
>gnl|CDD|235359 PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha;
Provisional.
Length = 310
Score = 26.6 bits (60), Expect = 2.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHM 27
EE EE EEE EEEE E + L
Sbjct: 227 EEAEEAEEEVEEEEPEFDPILLR 249
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 27.1 bits (60), Expect = 2.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNN 57
K K +K KKK K KKK
Sbjct: 118 PKPKTEKLKKKITVNKSTNKKKKK 141
Score = 25.9 bits (57), Expect = 6.0
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 24 DLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
L + L K +K KKK K KKKK
Sbjct: 109 PLAISLMRKPKPKTEKLKKKITVNKSTNKKKKK 141
Score = 25.6 bits (56), Expect = 9.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVVY 61
KKK K KKKKK K+ + Y
Sbjct: 126 KKKITVNKSTNKKKKKVLSSKDELIKY 152
>gnl|CDD|225611 COG3069, DcuC, C4-dicarboxylate transporter [Energy production and
conversion].
Length = 451
Score = 26.6 bits (59), Expect = 2.9
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 39 KKKKKKKKKKKKKKKKKNNPVVYIYALL-----------FSISGYLGVQVVLTLVKTCGA 87
KK+ + + ++K+ + V YA+L F G +++ + +
Sbjct: 218 LDKKENIEHEMLEQKEIDTVVPAFYAILPLTPLIGVLIGFDGKGLPQIKLHIITIMLISL 277
Query: 88 FVAVTVTTCRK 98
+A+ V RK
Sbjct: 278 LIAMLVEFLRK 288
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 26.1 bits (58), Expect = 2.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EEEEE E E+EE EE DL
Sbjct: 37 APEEEEEAELEDEELLEELDL 57
Score = 25.0 bits (55), Expect = 7.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 6 EEEEEEEEEEEEEEEEEEDL 25
EEEEE E E+E+L
Sbjct: 32 AAPAPAPEEEEEAELEDEEL 51
Score = 24.6 bits (54), Expect = 9.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
EEEEE E E+EE
Sbjct: 32 AAPAPAPEEEEEAELEDEE 50
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 26.6 bits (59), Expect = 3.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLA 33
EE EE + E E+ + E+ E LNYLA
Sbjct: 93 EEGEEPKSEPEKADLEDGEKRTKILNYLA 121
>gnl|CDD|236876 PRK11191, PRK11191, RNase E inhibitor protein; Provisional.
Length = 138
Score = 26.5 bits (59), Expect = 3.0
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
+ E+ ++E+ +E+++ H
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 25.3 bits (56), Expect = 6.9
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
E+ E+ ++E+ +E+++ +
Sbjct: 116 EDPNAEDGDDEDFVDEDDDGVR 137
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 26.7 bits (59), Expect = 3.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
N ++M K+K KK KK K V
Sbjct: 323 NTMSMTVVTKEKNKKVPVMFLGKKPKEKEV 352
Score = 25.5 bits (56), Expect = 7.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 27 MCLNYLAMKKKKKKKKKKKKKKKKKK 52
M + + +K KK KK K+K
Sbjct: 325 MSMTVVTKEKNKKVPVMFLGKKPKEK 350
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved
in conjugation with cellular fusion (mating) and
invasive growth. A high throughput localisation study
has localised RXT2 to the nucleus.
Length = 141
Score = 26.2 bits (58), Expect = 3.0
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E+ + ++++E++E++EE D
Sbjct: 49 EDGGDIDDDDEDDEDDEEADA 69
Score = 26.2 bits (58), Expect = 3.1
Identities = 6/22 (27%), Positives = 19/22 (86%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLH 26
+++E++E++EE + E+++E+ +
Sbjct: 56 DDDEDDEDDEEADAEDDDENPY 77
Score = 25.8 bits (57), Expect = 5.3
Identities = 7/22 (31%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
G+ ++++E++E++EE + E+D
Sbjct: 51 GGDIDDDDEDDEDDEEADAEDD 72
Score = 25.4 bits (56), Expect = 6.7
Identities = 5/20 (25%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
+E+ + ++++E++E++EE
Sbjct: 48 DEDGGDIDDDDEDDEDDEEA 67
>gnl|CDD|240709 cd12263, RRM_ABT1_like, RNA recognition motif found in activator
of basal transcription 1 (ABT1) and similar proteins.
This subfamily corresponds to the RRM of novel nuclear
proteins termed ABT1 and its homologous counterpart,
pre-rRNA-processing protein ESF2 (eighteen S factor 2),
from yeast. ABT1 associates with the TATA-binding
protein (TBP) and enhances basal transcription activity
of class II promoters. Meanwhile, ABT1 could be a
transcription cofactor that can bind to DNA in a
sequence-independent manner. The yeast ABT1 homolog,
ESF2, is a component of 90S preribosomes and 5'
ETS-based RNPs. It is previously identified as a
putative partner of the TATA-element binding protein.
However, it is primarily localized to the nucleolus and
physically associates with pre-rRNA processing factors.
ESF2 may play a role in ribosome biogenesis. It is
required for normal pre-rRNA processing, as well as for
SSU processome assembly and function. Both ABT1 and
ESF2 contain an RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 98
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 31 YLAMKKKKKKKKKKKKKKKKKKK 53
YL + K+K++KKK KKKK
Sbjct: 31 YLQPEDPAKRKRRKKKGGNKKKK 53
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 26.9 bits (60), Expect = 3.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
G EE + +E+ + E + E
Sbjct: 582 GGEETKPQEQPAPKAEAKPE 601
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 26.5 bits (59), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALL 66
Y +K+KKK K++KK K++K+ Y Y L+
Sbjct: 92 QYFEEEKEKKKAMSKEEKKAIKEEKEKLEEPYGYCLV 128
>gnl|CDD|219181 pfam06800, Sugar_transport, Sugar transport protein. This is a
family of bacterial sugar transporters approximately 300
residues long. Members include glucose uptake proteins,
ribose transport proteins, and several putative and
hypothetical membrane proteins probably involved in
sugar transport across bacterial membranes.
Length = 268
Score = 26.4 bits (59), Expect = 3.3
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 44 KKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCG--AFV--AVTVTTCRKA 99
+ KK+ K + N I LL S GY+G V+ L K G A + A+ +
Sbjct: 121 LQDKKEAKVESSKNLKKGIILLLISTIGYVGYVVLPQLFKVDGLSAILPQAIGMVIG--- 177
Query: 100 VTIVLSFVFFAKPF 113
++ S F F
Sbjct: 178 -ALIFSLKNFKVFF 190
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain.
Length = 372
Score = 26.5 bits (59), Expect = 3.3
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 12 EEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
+E +EE E++ DL + K KKKK KK +KK KKKKK V
Sbjct: 30 DELDEESFEKDLDLSELEELFSAKAKKKKSKKSEKKSSSKKKKKEISV 77
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 26.6 bits (59), Expect = 3.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
EE EEEE +EE E + +A + K K+ K KK +
Sbjct: 525 EEAEEEEIDEEAEILDKAQQEATMVAERIKALIKEGFKVYDKKTGTYRP 573
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 25.8 bits (57), Expect = 3.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEE 22
+ + E+ EEE E+EEE E+
Sbjct: 81 LARLEDREEERLEKEEEREKRA 102
Score = 25.0 bits (55), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 5 EEEEEEEEEEEEEEEEEEE 23
E+ EEE E+EEE E+
Sbjct: 84 LEDREEERLEKEEEREKRA 102
Score = 25.0 bits (55), Expect = 7.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
E+ EEE E+EEE E+
Sbjct: 82 ARLEDREEERLEKEEEREKR 101
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 25.7 bits (57), Expect = 3.4
Identities = 6/22 (27%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
K E+EE+E++ ++++++++D
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDD 77
Score = 25.7 bits (57), Expect = 4.1
Identities = 4/22 (18%), Positives = 17/22 (77%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+EE+E++ +++++++++D
Sbjct: 57 DEDEEDEDDVVLDDDDDDDDDD 78
Score = 25.7 bits (57), Expect = 4.4
Identities = 6/22 (27%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
K +E+EE+E++ +++++++D
Sbjct: 55 KKDEDEEDEDDVVLDDDDDDDD 76
Score = 25.3 bits (56), Expect = 5.2
Identities = 5/21 (23%), Positives = 18/21 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EE+E++ ++++++++++DL
Sbjct: 60 EEDEDDVVLDDDDDDDDDDDL 80
Score = 25.3 bits (56), Expect = 5.2
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E+ +++E+EE+E++ +D
Sbjct: 51 EDAAKKDEDEEDEDDVVLDD 70
Score = 25.0 bits (55), Expect = 6.5
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+++E+EE+E++ ++++D
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDD 73
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 26.6 bits (59), Expect = 3.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 33 AMKKKKKKKKK 43
A KKKKKKK+K
Sbjct: 740 ASKKKKKKKRK 750
>gnl|CDD|151773 pfam11332, DUF3134, Protein of unknown function (DUF3134). This
family of proteins with unknown function appears to be
restricted to Cyanobacteria.
Length = 72
Score = 25.4 bits (56), Expect = 3.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
E +E E EEEEE +L
Sbjct: 36 AREPQESPEVSTEEEEEISEL 56
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 26.6 bits (58), Expect = 3.5
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 2 GKGEEEEEEEEEEEEEEEEEE 22
KG + + EE++++ EEE+ +
Sbjct: 109 TKGSKTDSEEDDDDSEEEDNK 129
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 26.0 bits (58), Expect = 3.7
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
E EE +EEEEEE+++ ++ + + + K K K + + VV
Sbjct: 111 EPEEADEEEEEEDDDADDSP--------------EDEDPEPKDPPKTKGRPSLKVV 152
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 26.4 bits (58), Expect = 3.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
K + EE ++ EE+ + H L +++K+KK KK +K KKK+
Sbjct: 239 KKYNQMSVEERKDFREEQISQFQHGLLQEDQTGRERKRKKGKKTSRKFKKKR 290
>gnl|CDD|219748 pfam08214, KAT11, Histone acetylation protein. Histone acetylation
is required in many cellular processes including
transcription, DNA repair, and chromatin assembly. This
family contains the fungal KAT11 protein (previously
known as RTT109) which is required for H3K56
acetylation. Loss of KAT11 results in the loss of H3K56
acetylation, both on bulk histone and on chromatin.
KAT11 and H3K56 acetylation appear to correlate with
actively transcribed genes and associate with the
elongating form of Pol II in yeast. This family also
incorporates the p300/CBP histone acetyltransferase
domain which has different catalytic properties and
cofactor regulation to KAT11.
Length = 341
Score = 26.2 bits (58), Expect = 3.8
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 11 EEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
++ EE +E L + ++ + K KK+ K+ KK
Sbjct: 247 DQFWEELGFRQEFSLGRLVGFIGLVINPPKLVVSKKQYKRAKKA 290
Score = 25.8 bits (57), Expect = 5.4
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
++ EE +E + L K KK+ K+ KK ++
Sbjct: 247 DQFWEELGFRQEFSLGRLVGFIGLVINPPKLVVSKKQYKRAKKAITGEE 295
Score = 25.5 bits (56), Expect = 9.2
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
++ EE +E + + K KK+ K+ KK
Sbjct: 247 DQFWEELGFRQEFSLGRLVGFIGLV----INPPKLVVSKKQYKRAKKAITG 293
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 26.5 bits (59), Expect = 4.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 14 EEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E + + L K + K+KKK+KKK++KKKK
Sbjct: 302 LFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKK 343
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 26.1 bits (58), Expect = 4.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+E +E EEE+ +EEEE+
Sbjct: 216 HLQQESSLNDETEEEQPDEEEEE 238
Score = 25.7 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEE 22
+ + +E EEE+ +EEEEE
Sbjct: 217 LQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 26.1 bits (58), Expect = 4.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNNPVV 60
M +K+ + K+ +KK K
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAA 27
>gnl|CDD|184169 PRK13591, ubiA, prenyltransferase; Provisional.
Length = 307
Score = 26.2 bits (58), Expect = 4.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 67 FSISGYLGVQ-VVLTLVKTCGAFVAVTV-TTCRKAVTIVLSFVFF 109
+ G LGV+ +V+ + T G F+A + C + + L F+FF
Sbjct: 146 LKLKGGLGVKNIVVGI--TWGGFIAGIAGSYCGSLIPVGLIFLFF 188
>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular
trafficking and secretion].
Length = 314
Score = 26.3 bits (58), Expect = 4.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKK 54
Y+ K +KK+ ++KKKK KK
Sbjct: 290 QYILNKPLEKKRTTAREKKKKSKKA 314
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 26.4 bits (59), Expect = 4.1
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 14 EEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E+E+ +E +L+ + K+KKKKKKKKKKK++ ++
Sbjct: 64 EKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
>gnl|CDD|151885 pfam11446, DUF2897, Protein of unknown function (DUF2897). This
is a bacterial family of uncharacterized proteins.
Length = 55
Score = 24.9 bits (55), Expect = 4.1
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 MCLNYLA-MKKKKKKKKKKKKKKKKKKKKKNNPV 59
L Y A MK + K+KKKK K+ ++ N
Sbjct: 21 AVLKYSAKMKFPQFDKQKKKKAKRNAEQDAKNSA 54
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 26.2 bits (58), Expect = 4.1
Identities = 11/59 (18%), Positives = 21/59 (35%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
+ E E EE+ E+ + Y+ +++ + KK KK + V
Sbjct: 156 ESRLATEPSPAPELEEQLALMEKSYELAAKYMPRGQERLPVAPESKKGKKPSVQPVRAV 214
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 26.1 bits (57), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLN 30
+ + E+EE E+EEE + E + M L+
Sbjct: 261 KARAAQREQEETRTEDEEEPDSEAVEMYLD 290
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 26.5 bits (58), Expect = 4.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 37 KKKKKKKKKKKKKKKKKKKNNP 58
K KK KKKK KKK+ K P
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIP 143
Score = 25.7 bits (56), Expect = 7.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 36 KKKKKKKKKKKKKKKKKKKKNNP 58
K KK KKKK KKK+ K + P
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIPP 144
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 26.1 bits (58), Expect = 4.2
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKK--KKKKKKKKKKKKKKKKKKKNNPVV-- 60
EEE EE E E+E+ EEE+E+ + +K+ K KK K K KK +
Sbjct: 8 EEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDED 67
Query: 61 ---YIYALLFSISGYLGVQVVLTLV 82
+ LL I +GV+ ++
Sbjct: 68 LLEELEELL--IEADVGVETAEEII 90
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 25.7 bits (57), Expect = 4.3
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNN 57
+K+K+ +K ++KK K+++K+K
Sbjct: 108 EKEKRTRKNREKKFKRRQKEKEK 130
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 26.1 bits (58), Expect = 4.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
E+ E+E+ EE E++L L K ++ +KK + +K+ +K K N
Sbjct: 322 FTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSNK 372
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 26.5 bits (58), Expect = 4.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
G+G + E E EE EE+E D
Sbjct: 297 RGRGRSQNRAERERSEESEEKELD 320
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 26.3 bits (58), Expect = 4.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKK 45
GK E+ E EE E+EE E+ EE + + L + K K++ KK
Sbjct: 28 KGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
Score = 25.9 bits (57), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKK 48
+EE+ E EE E+EE E+ + K + K K++ KK
Sbjct: 29 GKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
Score = 25.9 bits (57), Expect = 5.9
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
EE++ +EE+ E EE E+EE + +K ++ K + K K++ KK
Sbjct: 25 EEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 26.2 bits (57), Expect = 4.5
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
EEEE+EE EE EE EE E + + ++ +K++K+ + ++++K +
Sbjct: 110 TVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSL 167
Score = 25.8 bits (56), Expect = 6.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
E EEEE+EE EE EE E+ + ++ +K++K+ + +++ P
Sbjct: 109 ETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKP 162
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 26.0 bits (58), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALL 66
Y +K+KKK K++KK K++K Y Y L+
Sbjct: 93 EYFEAEKEKKKAMSKEEKKAIKEEKDKLEEPYGYCLV 129
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 26.3 bits (58), Expect = 4.6
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
+ EEE EEEEE+ +EE++EE MK + + K +K
Sbjct: 105 PEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRLKIRKDYVPSGNKPR 161
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 26.2 bits (57), Expect = 4.7
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
E E E E ++ EE L +N + M K + ++KKKKK K YI
Sbjct: 576 ENSSENENEVTDKGEEIYSLLKKTINRIDMNKIPRPIINTQEKKKKKNLKVFETCKYI 633
>gnl|CDD|217431 pfam03219, TLC, TLC ATP/ADP transporter.
Length = 491
Score = 26.0 bits (58), Expect = 4.7
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQVVLTL 81
+N + + KKKKKKK K Y+ + S YL + +L +
Sbjct: 243 INKNVLTDPRLYASAKKKKKKKPKMSLKESFKYLLS-----SRYLLLIAILVI 290
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 26.1 bits (57), Expect = 4.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 8 EEEEEEEEEEEEEEEEDLH 26
E+EE EEEEEE++E D
Sbjct: 313 SEDEEVEEEEEEDDETDGL 331
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 25.8 bits (57), Expect = 4.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
+++++E EE E+ ++E E+ KKKK K K KK KK K +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 25.8 bits (57), Expect = 5.0
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
K E EE+++ + ++++ ++++D K K KK KK K +KK +K+
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKD----------KDKDKKDDKKDDKSEKKDEKE 117
Score = 25.4 bits (56), Expect = 6.5
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYI 62
K +E EE E+ ++E EE+++ K K K KK KK K +KK + +
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Query: 63 YAL 65
L
Sbjct: 123 EDL 125
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 25.8 bits (57), Expect = 4.9
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E++EEEE EEEEE+ EEE+
Sbjct: 75 EQQEEEESAEEEEEDPEEEN 94
Score = 25.8 bits (57), Expect = 5.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E++EEEE EEEEE+ EE+
Sbjct: 74 LEQQEEEESAEEEEEDPEEE 93
Score = 25.5 bits (56), Expect = 6.8
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ +EEEE EEEEE+ EEE E+
Sbjct: 75 EQQEEEESAEEEEEDPEEENEE 96
Score = 25.5 bits (56), Expect = 7.8
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEEE EEEEE+ EEE EE+
Sbjct: 78 EEEESAEEEEEDPEEENEEE 97
Score = 25.1 bits (55), Expect = 9.8
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EEE EEEEE+ EEE EEE+
Sbjct: 79 EEESAEEEEEDPEEENEEEE 98
Score = 25.1 bits (55), Expect = 9.9
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 4 GEEEEEEEEEEEEEEEEEEE 23
EEEEE+ EEE EEEEEE
Sbjct: 82 SAEEEEEDPEEENEEEEEEY 101
>gnl|CDD|198321 cd03212, GST_C_Metaxin1_3, C-terminal, alpha helical domain of
Metaxin 1, Metaxin 3, and similar proteins.
Glutathione S-transferase (GST) C-terminal domain
family, Metaxin subfamily, Metaxin 1-like proteins;
composed of metaxins 1 and 3, and similar proteins.
Mammalian metaxin (or metaxin 1) is a component of the
preprotein import complex of the mitochondrial outer
membrane. Metaxin extends to the cytosol and is
anchored to the mitochondrial membrane through its
C-terminal domain. In mice, metaxin is required for
embryonic development. Like the murine gene, the human
metaxin gene is located downstream to the
glucocerebrosidase (GBA) pseudogene and is convergently
transcribed. Inherited deficiency of GBA results in
Gaucher disease, which presents many diverse clinical
phenotypes. Alterations in the metaxin gene, in
addition to GBA mutations, may be associated with
Gaucher disease. Genome sequencing shows that a third
metaxin gene also exists in zebrafish, Xenopus,
chicken, and mammals.
Length = 137
Score = 25.7 bits (57), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLA 33
E + EEE E+E +D CLN L+
Sbjct: 52 LSELDSEEEVEKELYKDAKECLNLLS 77
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal
RNA recognition motif (RRM), also termed RBD (RNA
binding domain) or RNP (ribonucleoprotein domain), and
a C-terminal RRP7 domain.
Length = 118
Score = 25.7 bits (57), Expect = 5.1
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 5 EEEEEEEEEEEEEEEEEEED-------LHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+ EEEE+EE +E E +ED + + K K+K+KKKKKKK+ ++
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELED 90
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 25.7 bits (57), Expect = 5.2
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
++ +EE+ +EE++E+EE+E+
Sbjct: 108 PDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|220689 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
Srh. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srh is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 302
Score = 26.0 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 44 KKKKKKKKKKKKNNPVVYIYALLFSISGYL 73
K + KK + YI ALLF I YL
Sbjct: 118 KFRITWKKTRVLYLIFNYIIALLFLIPIYL 147
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 25.8 bits (57), Expect = 5.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
+ EEE+ E+++E EE E L
Sbjct: 145 PKIEEEKAEKDQEPEESETKL 165
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 25.8 bits (57), Expect = 5.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKK 47
E+E E+ EE E+E+ +NY +K K+ ++ K
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQELDK 43
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 25.3 bits (56), Expect = 5.6
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 17/68 (25%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKK------------KKKKKK 48
M + ++EEEEE+EE+E+E E +ED ++ + KK ++ K +K+KKK
Sbjct: 27 MEEYDKEEEEEKEEKEKEAEPDED-----GWVTVTKKGRRPKTARKESVAAKAAEKEKKK 81
Query: 49 KKKKKKKN 56
KKKK+ KN
Sbjct: 82 KKKKELKN 89
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 26.1 bits (57), Expect = 5.7
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKK 50
E E E+ ++E E++E+ M +K+ ++ ++KK K
Sbjct: 138 ADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDK 187
Score = 25.3 bits (55), Expect = 9.1
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
E E E+ ++E E+D + ++K+ ++ ++KK K
Sbjct: 139 DLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDK 187
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 25.1 bits (55), Expect = 5.8
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
L +K KK KKKKKKKKKK K K V
Sbjct: 10 LKLKGKKIDVKKKKKKKKKKNKSKEEVV 37
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 25.9 bits (57), Expect = 5.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 5 EEEEEEEEEEEEEEEEE 21
+EE E E+EEEEEE EE
Sbjct: 431 DEEGEYEDEEEEEEYEE 447
Score = 25.9 bits (57), Expect = 5.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 6 EEEEEEEEEEEEEEEEE 22
+EE E E+EEEEEE EE
Sbjct: 431 DEEGEYEDEEEEEEYEE 447
Score = 25.9 bits (57), Expect = 5.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 7 EEEEEEEEEEEEEEEEE 23
+EE E E+EEEEEE EE
Sbjct: 431 DEEGEYEDEEEEEEYEE 447
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 25.8 bits (57), Expect = 5.9
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKK 54
LA+K++K ++KK+K + + ++++
Sbjct: 32 LALKREKAQEKKRKAEAQAERRE 54
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 25.9 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPV 59
++KK K K KKK K+K+ P+
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPI 336
Score = 25.5 bits (56), Expect = 7.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 22 EEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
E+ M ++KK K K KKK K+K +
Sbjct: 297 EKHPGMTSICCCCFGRRKKPKSASKAKKKDSKRKES 332
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II
protein Lhcb4; Provisional.
Length = 286
Score = 25.9 bits (57), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 37 KKKKKKKKKKKKKKKKKKKNNPVVY 61
KKKK KK KKK K + P+ +
Sbjct: 32 GKKKKAAKKAKKKSSKVGADRPLWF 56
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 25.8 bits (56), Expect = 6.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
M E EEEE E E +E+E+E++ K K +K+K KK +K
Sbjct: 241 METSESEEEESSESESDEDEDEDN----------KGKIRKRKTDDAKKSRKPH 283
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 25.7 bits (56), Expect = 6.0
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
G +++E + +EEE+ +D
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDD 292
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 24.8 bits (55), Expect = 6.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 35 KKKKKKKKKKKKKKKKKKKK 54
+KKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
Score = 24.8 bits (55), Expect = 6.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 36 KKKKKKKKKKKKKKKKKKKK 55
+KKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/50 (18%), Positives = 29/50 (58%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
++E E + E+EEE++E + + ++ +++ ++++ + +K+K
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 25.8 bits (57), Expect = 7.2
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKK 51
K E + E+EEE++E ++ +++ ++++ + +K+K
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 25.4 bits (56), Expect = 7.9
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+G E +++++EEEE E EE+ED
Sbjct: 90 QGLESDDDDDEEEEWEVEEDED 111
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 25.8 bits (56), Expect = 6.3
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKK 47
E E E + + ++E + L NY+ KK + +
Sbjct: 172 ESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDEADAESVLS 213
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd
subfamily; Phd is a cytosolic regulator of G protein
functions. It specifically binds G protein betagamma
(Gbg)-subunits with high affinity, resulting in the
solubilization of Gbg from the plasma membrane. This
impedes the formation of a functional G protein trimer
(G protein alphabetagamma), thereby inhibiting G
protein-mediated signal transduction. Phd also inhibits
the GTPase activity of G protein alpha. Phd can be
phosphorylated by protein kinase A and G
protein-coupled receptor kinase 2, leading to its
inactivation. Phd was originally isolated from the
retina, where it is highly expressed and has been
implicated to play an important role in light
adaptation. It is also found in the pineal gland,
liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 25.7 bits (57), Expect = 6.3
Identities = 7/21 (33%), Positives = 18/21 (85%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
++ +E E+E+++++E++EE L
Sbjct: 20 KQLKESEQEDDDDDEDKEEFL 40
>gnl|CDD|147004 pfam04633, Herpes_BMRF2, Herpesvirus BMRF2 protein.
Length = 349
Score = 25.7 bits (57), Expect = 6.4
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 59 VVYIYALLFSIS-GYLGVQVVLTL--VKTC----------GAFVAVTVTTCRKAVTIVLS 105
+ +LF I+ L + + V C G A+TV + + LS
Sbjct: 95 TSVVVPVLFVINLLLLSLWPPVAFDAVYLCPPIYHRYYELGFLAAITVYYLLLSRELYLS 154
Query: 106 FVFFAKPF 113
VF PF
Sbjct: 155 PVFMI-PF 161
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 25.5 bits (56), Expect = 6.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
E E++ +E+EE+E EED
Sbjct: 39 EAEDDVVDEDEEDEAVVEED 58
Score = 25.1 bits (55), Expect = 9.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 5 EEEEEEEEEEEEEEEEEEED 24
EE+E EE+E E EEEED
Sbjct: 49 EEDEAVVEEDENELTEEEED 68
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 25.9 bits (58), Expect = 6.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 28 CLNYLAMKKKKKKKKKKKKKKKKKKK 53
C + K+K KK + KKK
Sbjct: 633 CQDRECGKRKNVSKKTNARCPNCKKK 658
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor
involved in ribosome biogenesis.
Length = 112
Score = 25.1 bits (55), Expect = 6.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPVV 60
K++KKK K+ +K++K++KK
Sbjct: 45 GVSKKKQRKKKPKRLTRKQRKRQKKGLERAE 75
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 25.7 bits (56), Expect = 6.8
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
+++E ++ EE E E + + L K K++ KK + + K+K +
Sbjct: 171 KKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE 223
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 24.3 bits (53), Expect = 6.8
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 38 KKKKKKKKKKKKKKKKKKNNPVV 60
+KKKK KKK+K K K NPVV
Sbjct: 17 QKKKKSAKKKRKPKLPKNFNPVV 39
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 25.5 bits (56), Expect = 6.9
Identities = 12/55 (21%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCL----NYLAMKKKKKKKKKKKKKKKKKKKKK 55
EE E+++E+E + E ++ + +A + +K+K+++K + K++K++
Sbjct: 106 EENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKER 160
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 25.6 bits (55), Expect = 7.0
Identities = 15/53 (28%), Positives = 40/53 (75%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNN 57
E E+EE++ E+E+++ E+E + + + + +++K+K +++K+K +++K+K +N
Sbjct: 150 ELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSN 202
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 25.7 bits (56), Expect = 7.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 3 KGEEEEEEEEEEEEEEEE 20
KGE +EEEEE EE+E
Sbjct: 1473 KGENPDEEEEEAFREEKE 1490
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 25.3 bits (56), Expect = 7.2
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 8 EEEEEEEEEEEEEEEEDL 25
++++EEE EEEE ++DL
Sbjct: 147 SDDDDEEESEEEESDDDL 164
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 25.8 bits (57), Expect = 7.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ +EEE++EE++ ++ EE +D
Sbjct: 68 SEESDEEEDDEEDDNDDSEENKD 90
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 25.3 bits (56), Expect = 7.6
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVY 61
E + + E+ ++ EE E+ L + K+ +K+ KK K + +K +KN+P
Sbjct: 86 AELQAQIEKLKKGREETEE----RTELLEELKQLEKELKKLKAELEKYEKNDPERI 137
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 25.5 bits (56), Expect = 7.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+G E + E+ E+E++ +E+ED
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDED 235
Score = 25.2 bits (55), Expect = 9.2
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEED 24
+ E++ +E+E++++ EEEE
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGS 246
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 25.4 bits (56), Expect = 7.8
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKN 56
+KKK++KK+++K+ K+
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKEL 198
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 25.4 bits (56), Expect = 7.9
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 2 GKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKK 48
GK ++EEE +++ + E A K K K+ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAAN----------APKPGAKPKRSKKKAP 304
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 25.5 bits (56), Expect = 8.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
+ E E EE+EE+++ED
Sbjct: 581 ASEETETITVPENNEEDEEDDDED 604
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 25.7 bits (56), Expect = 8.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEE 22
+ +EE E+E E +E EE
Sbjct: 344 TEESTDEESEDEVEIDESVIEE 365
Score = 25.3 bits (55), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCL 29
+EE E+E E +E EE M L
Sbjct: 348 TDEESEDEVEIDESVIEEVAEMEL 371
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 25.4 bits (56), Expect = 8.1
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
++E E + + EE + M A+K+K K+ ++KK +
Sbjct: 72 HPKDESEAAPDVVPKSSEELVQMKKAISALKQKIKRDSAERKKAASSGSRA 122
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 25.5 bits (56), Expect = 8.1
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 12 EEEEEEEEEEEEDLHMCLNYL 32
++++++E+ EE L C +Y+
Sbjct: 712 GDDDDDDEDGEEKLPSCFDYV 732
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 24.2 bits (53), Expect = 8.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1 MGKGEEEEEEEEEEEEEEEE 20
K +E+E E E E EEE
Sbjct: 34 SSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 25.6 bits (57), Expect = 8.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 5 EEEEEEEEEEEEEEEEEEEDL 25
EE E EEEEE++EE++ L
Sbjct: 71 EELAPELLEEEEEKKEEKKGL 91
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 25.6 bits (56), Expect = 8.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 8 EEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKK 48
E + E EE++E ++ + KK K KK + KK
Sbjct: 204 XEVTYYDGCESEEDDEGWYIEPQDATPEGKKGKNKKGRGKK 244
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal.
This eukaryotic domain is found at the C-terminus of
26S proteasome regulatory subunits such as the
non-ATPase Rpn3 subunit which is essential for
proteasomal function. It occurs together with the
PCI/PINT domain (pfam01399).
Length = 68
Score = 24.2 bits (53), Expect = 8.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
E++EEE+ EE E ++ E +L
Sbjct: 35 DKEKKEEEKAEEARERDQLELEL 57
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 25.6 bits (56), Expect = 8.3
Identities = 8/22 (36%), Positives = 20/22 (90%)
Query: 3 KGEEEEEEEEEEEEEEEEEEED 24
+ ++ +E+E+++E+E+E+E+ED
Sbjct: 888 EDDDADEDEDQDEDEDEDEDED 909
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 25.6 bits (57), Expect = 8.5
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 KKKKKKKKKKKKKKKKKKKKKNNPVV 60
K+KKK+KKK KKKK K + K V+
Sbjct: 400 KEKKKEKKKNKKKKYKVPRGKIYKVL 425
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 25.6 bits (56), Expect = 8.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNN 57
+K + K +K K+ KK+KK+++K+
Sbjct: 23 PVKDEAKPRKIKRVKKRKKREEKDE 47
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 23.7 bits (52), Expect = 8.6
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 33 AMKKKKKKKKKKKKKKKKKKKKKNN 57
KK KKKKK K + K K
Sbjct: 14 NAKKAAKKKKKGAKSQLKAAAKALE 38
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 25.6 bits (56), Expect = 8.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 22 EEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
E L L KK K KKK KK KKK+ K+
Sbjct: 133 MEGLDKILGIETKAKKGKAKKKTKKSKKKEAKES 166
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 25.4 bits (55), Expect = 8.8
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPV 59
E +E+EE+ ++ +E+ EE + KKKK KK K+ K+ + + K+ P+
Sbjct: 214 EVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPL 268
>gnl|CDD|145910 pfam03012, PP_M1, Phosphoprotein. This family includes the M1
phosphoprotein non-structural RNA polymerase alpha
subunit, which is thought to be a component of the
active polymerase, and may be involved in template
binding.
Length = 298
Score = 25.5 bits (56), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 EEEEEEEEEEEEEEEEDLHM 27
+ EEE+E+E EED +M
Sbjct: 64 SQFTEEEDEDEGSSEEDFYM 83
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 25.3 bits (55), Expect = 8.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEED 24
MG E E+EE+ ++++ E E++
Sbjct: 203 MGDDTESEDEEDGDDDQPTENEQE 226
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 24.8 bits (54), Expect = 8.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 3 KGEEEEEEEEEEEEEEEE 20
K EEE+EEE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 24.8 bits (54), Expect = 9.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 EEEEEEEEEEEEEEEEEEDL 25
EEEEEE +E + E EE ++
Sbjct: 51 EEEEEEVVKEVDAENEEVEV 70
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional.
Length = 903
Score = 25.6 bits (56), Expect = 9.3
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 36 KKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYLGVQVVLTLVKTCGAFVAVTVTT 95
K KK K K K+ K+K + +Y Y+ SG GV L++V +F+ V V
Sbjct: 218 KSSKKGKSSHVKGPKEAKEKESSQMYEYS-----SGLHGVG--LSVVNALSSFLKVDVFK 270
Query: 96 CRKAVTIVLSFVFFAKPFT 114
K +I LS KP +
Sbjct: 271 GGKIYSIELSKGKVTKPLS 289
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 25.5 bits (57), Expect = 9.3
Identities = 11/51 (21%), Positives = 30/51 (58%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKK 55
++EE + + E E+ EE+L L K+++ +KK+++ ++ +++ +
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 24.7 bits (54), Expect = 9.3
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 35 KKKKKKKK---KKKKKKKKKKKKKNNP 58
KKK+KK + + KK KK++ +
Sbjct: 79 KKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 25.4 bits (56), Expect = 9.5
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKK 55
K KKKKKKKKK KK K KK
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKK 274
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.351
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,223,239
Number of extensions: 602593
Number of successful extensions: 18489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10754
Number of HSP's successfully gapped: 2808
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.0 bits)