RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3370
(116 letters)
>d1e7ua2 b.7.1.1 (A:351-524) Phoshoinositide 3-kinase (PI3K) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 174
Score = 31.9 bits (72), Expect = 0.009
Identities = 9/50 (18%), Positives = 14/50 (28%)
Query: 24 DLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSISGYL 73
+ L K K + + K K + Y+ LL L
Sbjct: 76 GALLNLQIYCGAKPALSGKTSAEMPSPESKGKAQLLYYVNLLLIDHRFLL 125
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 29.4 bits (66), Expect = 0.045
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
M E+ + ++ ++ EE+E +DL + ++ + +K+
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRI 52
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.9 bits (65), Expect = 0.12
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALL 66
+Y ++K++KK+ ++KK+ + +++ Y + L
Sbjct: 99 DYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCEL 135
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 27.6 bits (61), Expect = 0.18
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDL 25
+G + E +EEEEE + +ED+
Sbjct: 47 EGAQALGPEVQEEEEEPQGDEDV 69
Score = 26.1 bits (57), Expect = 0.77
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1 MGKGEEEEEEEEEEEEEEEEEEEDL 25
+ + E +EEEEE + +E+ L
Sbjct: 46 LEGAQALGPEVQEEEEEPQGDEDVL 70
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 27.8 bits (62), Expect = 0.24
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALL 66
Y + + +K+ K++K K K++ + Y + ++
Sbjct: 107 QYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIM 143
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 26.1 bits (57), Expect = 0.38
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 32 LAMKKKKKKKKKKKKKKKKKKKK 54
L M+K + + +K K KK++
Sbjct: 44 LTMRKDGIQTRNRKVSSKGKKRR 66
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 26.4 bits (58), Expect = 0.46
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 3 KGEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKK 47
EE+ + E +E + + + + A KKKK+K++K
Sbjct: 42 HALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 23.7 bits (51), Expect = 3.5
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKK 53
EE+ + E +E LHM + KKKK+K++K
Sbjct: 43 ALSREEQAKYYELARKERQLHM----QLYPGWSARDNYGKKKKRKREK 86
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 26.4 bits (58), Expect = 0.69
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKK 42
+ EEE + ++ EE+E E + + K KK
Sbjct: 70 FDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK 107
Score = 23.7 bits (51), Expect = 6.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 5 EEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKK 43
+ EEE + ++ EE+E +L N++ K KK
Sbjct: 69 TFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK 107
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.5 bits (57), Expect = 0.85
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 1 MGKGEEEEEEEEEEEEEEEE 20
+ K E E++ E+ E
Sbjct: 302 VWKVEAEDKTEKLAAALEHH 321
Score = 26.5 bits (57), Expect = 0.97
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 6 EEEEEEEEEEEEEEEE 21
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.5 bits (57), Expect = 0.97
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 7 EEEEEEEEEEEEEEEE 22
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.5 bits (57), Expect = 0.97
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 8 EEEEEEEEEEEEEEEE 23
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 24.9 bits (53), Expect = 2.6
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 9 EEEEEEEEEEEEEEEDLH 26
E E++ E+ E H
Sbjct: 306 EAEDKTEKLAAALEHHHH 323
>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus
communis) [TaxId: 3988]}
Length = 125
Score = 25.3 bits (55), Expect = 1.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAM 34
E E ++ +E + +DL C YL
Sbjct: 9 EREGSSSQQCRQEVQRKDLSSCERYLRQ 36
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.5 bits (55), Expect = 2.1
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 19 EEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFSIS 70
E E + ++ L + K K K KKK K +++I+ L I
Sbjct: 19 EAEIKRINKELANIRSKFKGDKALDGYSKKKYVCK-----LLFIFLLGHDID 65
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 24.7 bits (53), Expect = 2.7
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 26 HMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
+ L K++ + + + + +K+
Sbjct: 153 ILFFERLPKPKREAFLEANRAELVRFQKE 181
Score = 24.3 bits (52), Expect = 3.6
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKK 55
+ K K++ + + + + +K
Sbjct: 159 LPKPKREAFLEANRAELVRFQK 180
Score = 23.9 bits (51), Expect = 5.5
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 35 KKKKKKKKKKKKKKKKKKKKK 55
K K++ + + + + +K+
Sbjct: 161 KPKREAFLEANRAELVRFQKE 181
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
halodurans [TaxId: 86665]}
Length = 132
Score = 24.5 bits (53), Expect = 3.0
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 21 EEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+ N K K KK K + ++
Sbjct: 62 RNSRKPIYSNSQTAIKWVKDKKAKSTLVRNEETALI 97
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus
influenzae [TaxId: 727]}
Length = 170
Score = 24.4 bits (53), Expect = 3.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYL 32
G +E++ EEE E EE E +
Sbjct: 137 GYDEDDNEEELAEALEEIIEYVRTIAMLF 165
Score = 24.0 bits (52), Expect = 4.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 11 EEEEEEEEEEEEEDLHMCLNYLAM 34
+E++ EEE E L + Y+
Sbjct: 137 GYDEDDNEEELAEALEEIIEYVRT 160
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 24.3 bits (53), Expect = 3.9
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 4 GEEEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKK-KKKKKKKKKKKKKNNP 58
EE + + E+ + L ++ KK+ K +K K ++ P
Sbjct: 52 DNSEEAVDGMGADVEQVIDIVDSFQLTSTSLSKKEYSVYIKNYMQKILKYLEEKKP 107
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 24.5 bits (52), Expect = 4.2
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 7 EEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKK 43
E+ ++ E + ED+H + + K + KK
Sbjct: 64 LEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK 100
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 169
Score = 24.0 bits (51), Expect = 4.7
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKN 56
+ K+ + +KK +K+ +++ +
Sbjct: 147 LSTLKRDRIRKKLEKQHRQQAHH 169
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 23.6 bits (51), Expect = 4.8
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 29 LNYLAMKKKKKKKKKKKKKKKKKKKKK 55
+ LA K + +++K+++KK KKKKKK
Sbjct: 78 MIELARKIAEIREQKREQKKDKKKKKK 104
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 24.3 bits (52), Expect = 4.9
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 26 HMCLNYLAMKKKKKKKKKKKKKKKKKKKK 54
+Y A K KKK + + K+
Sbjct: 131 KSTYSYWASVLNTKASFSKKKSRVQMVKE 159
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 23.5 bits (51), Expect = 6.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 19 EEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKK 52
E+ E+++ L +A K K+ +K+K+++ KKK
Sbjct: 128 EDIEKEIKNALMEVARKLKQYLSEKRKEQEAKKK 161
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 23.5 bits (51), Expect = 6.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 39 KKKKKKKKKKKKKKKKKNNP 58
+K ++K +KK K K P
Sbjct: 8 RKGREKVRKKSKVPALKGAP 27
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 23.3 bits (50), Expect = 6.7
Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 6 EEEEEEEEEEEEEEEEEEDLHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKNNP 58
+ ++E ++ EE++ + ++ K + + K+ K+K+ P
Sbjct: 47 RISQSQKEHYKKLAEEQQRQYK-VHLDLWVKSLSPQDRAAYKEYISNKRKSGP 98
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.2 bits (50), Expect = 6.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 35 KKKKKKKKKKKKKKKKKK 52
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.2 bits (50), Expect = 6.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 36 KKKKKKKKKKKKKKKKKK 53
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.2 bits (50), Expect = 6.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 37 KKKKKKKKKKKKKKKKKK 54
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.2 bits (50), Expect = 6.7
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 38 KKKKKKKKKKKKKKKKKK 55
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex
aeolicus [TaxId: 63363]}
Length = 101
Score = 23.2 bits (50), Expect = 6.9
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKK 55
+K+ + + K+ +K
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEK 99
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease
I-TevI {Bacteriophage T4 [TaxId: 10665]}
Length = 96
Score = 22.9 bits (49), Expect = 7.7
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 30 NYLAMKKKKKKKKKKKKKKKKKKKKKNNPVVYIYALLFS 68
N K K K +K K KK N + ++F
Sbjct: 27 NSFFNHKHSDITKSKISEKMKGKKPSNIKKISCDGVIFD 65
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 23.3 bits (50), Expect = 7.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 40 KKKKKKKKKKKKKKKKNNP 58
K K K K +++ K +N
Sbjct: 2 KNKGKGGKNRRRGKNENES 20
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.2 bits (49), Expect = 8.1
Identities = 4/32 (12%), Positives = 17/32 (53%)
Query: 25 LHMCLNYLAMKKKKKKKKKKKKKKKKKKKKKN 56
+++ + + K+ K+K ++ ++K++
Sbjct: 67 IYVGMATDLVLDDSKRLAKRKLIEENREKRRR 98
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 22.5 bits (48), Expect = 9.3
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 34 MKKKKKKKKKKKKKKKKKKKKKNNPVVYIY 63
M ++ KK+ +KKK K Y++
Sbjct: 1 MVTPREPKKRTTRKKKDPNAPKRALSAYMF 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.351
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,668
Number of extensions: 24056
Number of successful extensions: 976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 281
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)