BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3374
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 32/61 (52%)
Query: 6 RRGNDSTGVKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTM 65
RR + TG RVVNQ AT+RPDIIDPA+LRPGRL ++ +
Sbjct: 118 RRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL 177
Query: 66 P 66
P
Sbjct: 178 P 178
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 16 DRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ AT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 136 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 16 DRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ AT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 14 VKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+Q AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 16 DRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ AT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 14 VKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+Q AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 3 TGYRRGNDSTGVKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVH 62
+G GND +++ +NQ AT+RPDI+DPALLRPGR +
Sbjct: 150 SGVGGGNDE---REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 63 CTMPDL 68
PD+
Sbjct: 207 IDAPDV 212
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDL 68
AT+RPDI+DPALLRPGR + PD+
Sbjct: 160 ATNRPDILDPALLRPGRFDKKIVVDPPDM 188
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDL 68
AT+RPDI+DPALLRPGR + PD+
Sbjct: 160 ATNRPDILDPALLRPGRFDKKIVVDPPDM 188
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDL 68
AT+RP+ +DPALLRPGR+ V ++PDL
Sbjct: 354 ATNRPNTLDPALLRPGRIDRKVEFSLPDL 382
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 3 TGYRRGNDSTGVKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVH 62
+G GND +++ +NQ AT+RPDI+DPALLRPGR +
Sbjct: 150 SGVGGGNDE---REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 63 CTMPDL 68
PD+
Sbjct: 207 IDAPDV 212
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 3 TGYRRGNDSTGVKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVH 62
+G GND +++ +NQ AT+RPDI+DPALLRPGR +
Sbjct: 141 SGVGGGNDE---REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 197
Query: 63 CTMPDL 68
PD+
Sbjct: 198 IDAPDV 203
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69
AT+RPD +DPALLRPGRL V +P+ A
Sbjct: 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDL 68
AT+RPD++DPALLRPGR V +PD+
Sbjct: 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 3 TGYRRGNDSTGVKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVH 62
+G GND +++ +NQ AT+RPDI+DPALLRPGR +
Sbjct: 126 SGVGGGNDE---REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 182
Query: 63 CTMPDL 68
PD+
Sbjct: 183 IDAPDV 188
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPD 67
AT+RPDI+DPA+LRPGR + PD
Sbjct: 162 ATNRPDILDPAILRPGRFDRIIEVPAPD 189
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDL 68
AT+RP+I+DPAL+RPGR V PD
Sbjct: 157 ATNRPEILDPALMRPGRFDRQVLVDKPDF 185
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 37.0 bits (84), Expect = 0.002, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69
AT+R DI+DPALLRPGR+ + P +A
Sbjct: 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVA 322
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDL 68
+T+R DI+D AL+RPGRL V +P L
Sbjct: 151 STNRADILDGALMRPGRLDRHVFIDLPTL 179
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMP 66
AT+R D++DPALLR GRL + +P
Sbjct: 326 ATNRVDVLDPALLRSGRLDRKIEFPLP 352
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 40 ATSRPDIIDPALLRPGRLGSSV 61
AT+R D +DPALLRPGRL +
Sbjct: 317 ATNRADTLDPALLRPGRLDRKI 338
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 14 VKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+Q AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 14 VKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+Q AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 14 VKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+Q AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 14 VKDRVVNQXXXXXXXXXXXXXXXXXXATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+Q AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 40 ATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69
AT++ + +DPAL+RPGR+ + PDL+
Sbjct: 327 ATNKIETLDPALIRPGRIDRKILFENPDLS 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,605,838
Number of Sequences: 62578
Number of extensions: 29064
Number of successful extensions: 40
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 26
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)