BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3374
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1
Length = 1283
Score = 107 bits (268), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/62 (77%), Positives = 55/62 (88%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RRG+D+TGV DRVVNQLLT+LDGVEGL+GVYV+ ATSRPD+IDPALLRPGRL V+C
Sbjct: 948 RRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPP 1007
Query: 66 PD 67
PD
Sbjct: 1008 PD 1009
>sp|Q5BL07|PEX1_MOUSE Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2
Length = 1284
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/62 (77%), Positives = 55/62 (88%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RRG+D+TGV DRVVNQLLT+LDGVEGL+GVYV+ ATSRPD+IDPALLRPGRL V+C
Sbjct: 949 RRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPP 1008
Query: 66 PD 67
PD
Sbjct: 1009 PD 1010
>sp|Q54GX5|PEX1_DICDI Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1
PE=3 SV=1
Length = 1227
Score = 105 bits (262), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 55/63 (87%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RRG+D++GV DRVVNQ LT+LDGVEGL GVYV+ ATSRPD+IDPALLRPGRL S++C +
Sbjct: 974 RRGHDNSGVTDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNI 1033
Query: 66 PDL 68
P+
Sbjct: 1034 PEF 1036
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris
GN=PEX1 PE=3 SV=1
Length = 1157
Score = 102 bits (254), Expect = 8e-22, Method: Composition-based stats.
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+RG+DSTGV DRVVNQ+LT++DG EGL+GVYV+ ATSRPD+ID ALLRPGRL SV C M
Sbjct: 907 KRGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDM 966
Query: 66 PDL 68
PD
Sbjct: 967 PDF 969
>sp|P24004|PEX1_YEAST Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PEX1 PE=1 SV=2
Length = 1043
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+RG+DSTGV DRVVNQLLT++DG EGL+GVY++ ATSRPD+ID ALLRPGRL SV C +
Sbjct: 805 KRGHDSTGVTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNI 864
Query: 66 P 66
P
Sbjct: 865 P 865
>sp|O74941|PEX1_SCHPO Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pex1 PE=3 SV=1
Length = 937
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RRG DSTGV DRVVNQ+LT++DG E L+GVY+V AT+RPD+IDPALLRPGRL + C +
Sbjct: 714 RRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDL 773
Query: 66 PD 67
P+
Sbjct: 774 PN 775
>sp|Q9FNP1|PEX1_ARATH Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2
SV=2
Length = 1130
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+RG+D+TGV DRVVNQ LTELDGVE L GV+V ATSRPD++DPALLRPGRL + C
Sbjct: 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDF 1011
Query: 66 P 66
P
Sbjct: 1012 P 1012
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 3/65 (4%)
Query: 6 RRGN---DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVH 62
+RGN D+ G DRV+NQLLTE+DG+ + V+++GAT+RPDIIDPALLRPGRL ++
Sbjct: 589 QRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 648
Query: 63 CTMPD 67
+PD
Sbjct: 649 IPLPD 653
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+GAT+RP+ IDPAL R GR + +PD
Sbjct: 324 VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPD 377
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
D+ G DRV+NQLLTE+DG+ + V+++GAT+RPDIIDPALLRPGRL ++ +PD
Sbjct: 596 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 653
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+GAT+RP+ IDPAL R GR + +PD
Sbjct: 324 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPD 377
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
D+ G DRV+NQLLTE+DG+ + V+++GAT+RPDIIDPALLRPGRL ++ +PD
Sbjct: 596 DAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 653
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+GAT+RP+ IDPAL R GR + +PD
Sbjct: 324 VERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPD 377
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 2 ITGYRRGN--DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGS 59
I R GN D+ G DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL
Sbjct: 579 IAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQ 638
Query: 60 SVHCTMPD 67
++ +PD
Sbjct: 639 LIYIPLPD 646
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R V+ R+V+QLLT +DG++ + V+ AT+RP+ IDPAL R GR + +
Sbjct: 309 KRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGI 368
Query: 66 PD 67
PD
Sbjct: 369 PD 370
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2
OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2
Length = 810
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69
D+ G DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD A
Sbjct: 597 DAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEA 656
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ ID AL R GR + +PD
Sbjct: 325 VEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPD 378
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
D+ G DRVVNQLLTE+DG+ + V+V+GAT+RPD IDPA+LRPGRL ++ +PD
Sbjct: 602 DAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPD 659
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R + V+ RVV+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +
Sbjct: 322 KRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGI 381
Query: 66 PD 67
PD
Sbjct: 382 PD 383
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 6 RRGND-STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCT 64
+RG D S+ V D+VVNQLLTELDG+E + V V+ AT+RPDIIDPALLRPGRL +
Sbjct: 560 KRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVP 619
Query: 65 MPD 67
+PD
Sbjct: 620 VPD 622
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 9 NDSTG-VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
+++TG V+ R+V QLLT +DG++G V V+GAT+RP+ +DPAL RPGR + +PD
Sbjct: 289 DEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPD 348
>sp|O15381|NVL_HUMAN Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1
SV=1
Length = 856
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RR + TG RVVNQLLTE+DG+E + V+++ AT+RPDIIDPA+LRPGRL ++ +
Sbjct: 689 RRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL 748
Query: 66 P 66
P
Sbjct: 749 P 749
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 6 RRGNDSTGVKDRVVNQLLT---ELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVH 62
+R S ++ R+V QLLT +L+ V V V+GAT+RPD +DPAL R GR +
Sbjct: 372 KREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREIC 431
Query: 63 CTMPDLA 69
+PD A
Sbjct: 432 LGIPDEA 438
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 2 ITGYRRGND-STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSS 60
I R GND S+G DR++NQLL+E+DG+ + V+V+GAT+RPD +D AL+RPGRL
Sbjct: 586 IAKARSGNDGSSGATDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLDSALMRPGRLDQL 645
Query: 61 VHCTMPDL 68
V+ +PDL
Sbjct: 646 VYIPLPDL 653
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R V+ R+V+QLLT +DG++ V V+GAT+RP+ IDPAL R GR + +
Sbjct: 316 KREKSQGEVERRIVSQLLTLMDGMKARSNVIVLGATNRPNSIDPALRRYGRFDREIEIGV 375
Query: 66 PD 67
PD
Sbjct: 376 PD 377
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 6 RRGN---DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVH 62
+RGN D+ G DRV+NQLLTE+DG+ + V+++GAT+RPDIID ALLRPGRL ++
Sbjct: 588 QRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIY 647
Query: 63 CTMPD 67
+PD
Sbjct: 648 IPLPD 652
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R + V+ R+V+QLLT +DG++ V V+GAT+RP+ IDPAL R GR + +
Sbjct: 315 KREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGV 374
Query: 66 PD 67
PD
Sbjct: 375 PD 376
>sp|Q9DBY8|NVL_MOUSE Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=1
SV=1
Length = 855
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RR + TG RVVNQLLTE+DG+E + V+++ AT+RPDIIDPA+LRPGRL ++ +
Sbjct: 688 RRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGL 747
Query: 66 P 66
P
Sbjct: 748 P 748
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 6 RRGNDSTGVKDRVVNQLLT---ELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVH 62
+R S ++ R+V QLLT +L+ V V V+GAT+RPD +DPAL R GR V
Sbjct: 371 KREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVC 430
Query: 63 CTMPDLA 69
+PD A
Sbjct: 431 LGIPDEA 437
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 6 RRGNDS-TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCT 64
RRG S +GV +R+VNQLLT LDG+E + GV V+GAT+RPDI+DPALLR GR ++
Sbjct: 575 RRGTTSDSGVTERIVNQLLTSLDGIEVMNGVVVIGATNRPDIMDPALLRAGRFDKLIYIP 634
Query: 65 MPD 67
PD
Sbjct: 635 PPD 637
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ RVV QLLT +DG++ V V+GAT+R D IDPAL RPGR + +PD
Sbjct: 306 VERRVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPD 359
>sp|P33760|PEX6_YEAST Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PEX6 PE=1 SV=1
Length = 1030
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 6 RRGN--DSTGVKDRVVNQLLTELDGVE-GLEGVYVVGATSRPDIIDPALLRPGRLGSSVH 62
+RGN DS GV DR+V+QLL ELDG+ +GV+V+GAT+RPD++D ALLRPGR ++
Sbjct: 839 KRGNQGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLY 898
Query: 63 CTMPD 67
+PD
Sbjct: 899 LGIPD 903
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 44/62 (70%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RR + + RVVN LLTELDG+ GVYV+ AT+RPDIIDPA+LRPGRL ++ +
Sbjct: 600 RRDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDL 659
Query: 66 PD 67
PD
Sbjct: 660 PD 661
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 6 RRGNDSTGVKDRVVNQLLTELD--GVEGLEG--VYVVGATSRPDIIDPALLRPGRLGSSV 61
+R + ++ R+V Q LT +D E +G V V+GAT+RPD +D AL R GR +
Sbjct: 282 KRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREI 341
Query: 62 HCTMP 66
T+P
Sbjct: 342 CLTVP 346
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1
OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1
Length = 809
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD A
Sbjct: 605 DRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEA 658
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R + V+ R+V+QLLT +DGV+G + V+ AT+RP+ ID AL R GR + +
Sbjct: 318 KREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREIDIGI 377
Query: 66 PD 67
PD
Sbjct: 378 PD 379
>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp
PE=1 SV=1
Length = 806
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|Q9QUL6|NSF_RAT Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1
Length = 744
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
STGV D VVNQLL+++DGVE L + V+G T+RPD+ID ALLRPGRL + +PD
Sbjct: 343 STGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPD 399
>sp|P46460|NSF_MOUSE Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2
Length = 744
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
STGV D VVNQLL+++DGVE L + V+G T+RPD+ID ALLRPGRL + +PD
Sbjct: 343 STGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPD 399
>sp|Q5R410|NSF_PONAB Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1
Length = 744
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
STGV D VVNQLL+++DGVE L + V+G T+RPD+ID ALLRPGRL + +PD
Sbjct: 343 STGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPD 399
>sp|P46459|NSF_HUMAN Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3
Length = 744
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
STGV D VVNQLL+++DGVE L + V+G T+RPD+ID ALLRPGRL + +PD
Sbjct: 343 STGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPD 399
>sp|P18708|NSF_CRIGR Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1
Length = 744
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
STGV D VVNQLL+++DGVE L + V+G T+RPD+ID ALLRPGRL + +PD
Sbjct: 343 STGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPD 399
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|Q6CPV1|PEX6_KLULA Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PEX6 PE=3 SV=1
Length = 1000
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 6 RRGN--DSTGVKDRVVNQLLTELDGVE-GLEGVYVVGATSRPDIIDPALLRPGRLGSSVH 62
+RGN DS GV DR+V+QLL ELDG+ G +GV+V+GAT+RPD++D ALLRPGR ++
Sbjct: 809 KRGNQGDSGGVMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLY 868
Query: 63 CTMPD 67
+ D
Sbjct: 869 LGISD 873
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus
GN=Vcp PE=1 SV=3
Length = 806
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1
SV=5
Length = 806
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp
PE=1 SV=4
Length = 806
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP
PE=1 SV=4
Length = 806
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|Q3ZBT1|TERA_BOVIN Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2
SV=1
Length = 806
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|C6V4R9|FTSH_NEORI ATP-dependent zinc metalloprotease FtsH OS=Neorickettsia risticii
(strain Illinois) GN=ftsH PE=3 SV=1
Length = 636
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 4 GYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHC 63
G+ GND +++ +NQLL E+DG E EGV ++ AT+RPD++DPALLRPGR +
Sbjct: 268 GFGGGNDE---REQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGRFDRQITI 324
Query: 64 TMPDLA 69
++PD+A
Sbjct: 325 SIPDIA 330
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate
3D7) GN=PF07_0047 PE=3 SV=2
Length = 1229
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
R N + DRV+NQ+LTE+DG+ + ++++ AT+RPDI+D AL RPGRL ++ ++
Sbjct: 1043 RNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISL 1102
Query: 66 PDL 68
PDL
Sbjct: 1103 PDL 1105
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R + ++ RVV+QLLT +DG++ V V+ AT+RP+ IDPAL R GR + +
Sbjct: 635 KRSKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPV 694
Query: 66 PD 67
PD
Sbjct: 695 PD 696
>sp|Q9M0Y8|NSF_ARATH Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2
Length = 742
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69
D TGV D +VNQLLT++DGVE L V ++G T+R D++D ALLRPGRL V ++PD A
Sbjct: 339 DGTGVHDSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEA 398
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 41/51 (80%)
Query: 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
RVVNQLLTE+DGV + V+V+GAT+RPD IDPAL+RPGRL ++ +PD
Sbjct: 618 RVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPD 668
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R + V+ RVV+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +
Sbjct: 332 KREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGI 391
Query: 66 PD 67
PD
Sbjct: 392 PD 393
>sp|Q07844|RIX7_YEAST Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RIX7 PE=1 SV=1
Length = 837
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
RR + RVVN LLTELDG+ G++V+GAT+RPD+IDPA+LRPGRL S+ +
Sbjct: 641 RRDTSLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIEL 700
Query: 66 PD 67
P+
Sbjct: 701 PN 702
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 2 ITGYRRGNDSTGVKDRVVNQLLTELD--GVEGLEG--VYVVGATSRPDIIDPALLRPGRL 57
IT R G ++ R+V QLLT +D +E G V ++GAT+RPD +D AL R GR
Sbjct: 310 ITPKRDGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRF 369
Query: 58 GSSVHCTMPD 67
+ +P+
Sbjct: 370 DREICLNVPN 379
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 43/52 (82%)
Query: 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
DRV+NQ+LTE+DG+ + V+++GAT+RPDIIDPA+LRPGRL ++ +PD
Sbjct: 598 DRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ R+V+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +PD
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
R G + V +RVV+QLLTELDG+E L+ V V+ AT+RPD+IDPALLRPGRL ++
Sbjct: 564 RGGIGDSHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPP 623
Query: 66 PD 67
PD
Sbjct: 624 PD 625
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67
V+ RVV QLL +DG+E V V+ AT+RPD IDPAL RPGR + +PD
Sbjct: 298 VERRVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPD 351
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69
D+ G DRVVNQLLTE+DG+ + V+V+GAT+RP+ +D AL+RPGRL + V+ +PD A
Sbjct: 614 DAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYVPLPDQA 673
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65
+R + V+ RVV+QLLT +DG++ V V+ AT+RP+ IDPAL R GR V +
Sbjct: 333 KREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDIGI 392
Query: 66 PD 67
PD
Sbjct: 393 PD 394
>sp|Q99LC9|PEX6_MOUSE Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1
Length = 981
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 7 RGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRL 57
R DS GV DRVV+QLL ELDG+ + V+V+GAT+RPD++DPALLRPGR
Sbjct: 815 RSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRF 865
>sp|P54777|PEX6_RAT Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1
Length = 978
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 7 RGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRL 57
R DS GV DRVV+QLL ELDG+ + V+V+GAT+RPD++DPALLRPGR
Sbjct: 812 RSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRF 862
>sp|Q13608|PEX6_HUMAN Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2
Length = 980
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 7 RGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRL 57
R DS GV DRVV+QLL ELDG+ + V+V+GAT+RPD++DPALLRPGR
Sbjct: 814 RSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRF 864
>sp|Q9UVU5|PEX6_PICAN Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1
Length = 1135
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 6 RRGN--DSTGVKDRVVNQLLTELDGVEGLEG---VYVVGATSRPDIIDPALLRPGRLGSS 60
+RGN DS GV DR+V+QLL ELDG+ G EG V+VVGAT+RPD++D ALLRPGR
Sbjct: 920 KRGNQGDSGGVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKM 979
Query: 61 VHCTMPD 67
++ + D
Sbjct: 980 LYLGIAD 986
>sp|B0K657|FTSH2_THEPX ATP-dependent zinc metalloprotease FtsH 2 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH2 PE=3 SV=1
Length = 510
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 4 GYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHC 63
G +R D+ KD+ +NQLL E+DG EG+ V+GAT+R D++D ALLRPGR ++H
Sbjct: 189 GTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEALLRPGRFDRTIHI 248
Query: 64 TMPDL 68
P++
Sbjct: 249 GAPNM 253
>sp|Q6FW67|PEX6_CANGA Peroxisomal biogenesis factor 6 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PEX6 PE=3 SV=1
Length = 1017
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 6 RRGN--DSTGVKDRVVNQLLTELDGVEGL-EGVYVVGATSRPDIIDPALLRPGRLGSSVH 62
+RGN DS GV DR+V+QLL ELDG+ +GV+++GAT+RPD++D ALLRPGR ++
Sbjct: 825 KRGNQGDSGGVMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIY 884
Query: 63 CTMPD 67
+ D
Sbjct: 885 LGIAD 889
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 2/53 (3%)
Query: 7 RGN--DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRL 57
RGN DS GV DRVV+QLL ELDG++ V+++GAT+RPD++D +L+RPGRL
Sbjct: 1027 RGNGADSGGVMDRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRL 1079
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,818,785
Number of Sequences: 539616
Number of extensions: 950841
Number of successful extensions: 2842
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 595
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)