Query psy3374
Match_columns 72
No_of_seqs 146 out of 1108
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:25:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730|consensus 99.9 1.3E-22 2.9E-27 150.7 5.4 68 4-71 540-607 (693)
2 COG1222 RPT1 ATP-dependent 26S 99.9 4E-22 8.6E-27 141.0 6.2 62 10-71 266-327 (406)
3 KOG0733|consensus 99.8 1.8E-21 3.9E-26 144.7 6.5 69 3-71 616-684 (802)
4 KOG0734|consensus 99.8 1.7E-20 3.7E-25 138.3 4.9 68 4-71 409-476 (752)
5 KOG0736|consensus 99.8 3.6E-20 7.9E-25 140.0 6.6 68 3-70 776-847 (953)
6 KOG0733|consensus 99.8 2.1E-19 4.6E-24 133.7 4.6 70 3-72 294-367 (802)
7 KOG0735|consensus 99.8 8.8E-19 1.9E-23 132.0 6.1 69 3-71 772-840 (952)
8 KOG0738|consensus 99.8 3.7E-19 8.1E-24 127.4 3.0 68 3-72 316-388 (491)
9 COG0464 SpoVK ATPases of the A 99.7 9.9E-18 2.1E-22 120.8 6.4 68 4-71 348-415 (494)
10 COG0465 HflB ATP-dependent Zn 99.7 1E-17 2.3E-22 124.2 5.4 62 10-71 264-325 (596)
11 KOG0731|consensus 99.7 2.6E-17 5.7E-22 124.4 6.1 62 10-71 426-487 (774)
12 TIGR03689 pup_AAA proteasome A 99.7 2.8E-17 6E-22 120.4 6.0 67 5-71 303-370 (512)
13 KOG0741|consensus 99.7 9.9E-18 2.1E-22 123.7 2.6 69 3-71 336-406 (744)
14 KOG0728|consensus 99.7 8.4E-17 1.8E-21 111.4 5.2 61 11-71 263-323 (404)
15 TIGR01243 CDC48 AAA family ATP 99.7 1.9E-16 4.1E-21 119.0 6.7 67 5-71 560-627 (733)
16 KOG0727|consensus 99.7 1.4E-16 3E-21 110.4 5.3 61 11-71 271-331 (408)
17 KOG0729|consensus 99.6 3.9E-16 8.4E-21 108.9 5.8 62 10-71 292-353 (435)
18 KOG0726|consensus 99.6 3.4E-16 7.4E-21 109.9 5.3 58 14-71 304-361 (440)
19 KOG0739|consensus 99.6 1.6E-16 3.5E-21 111.6 3.6 67 3-71 237-304 (439)
20 KOG0732|consensus 99.6 3.6E-16 7.8E-21 121.1 5.2 67 5-71 377-443 (1080)
21 PRK10733 hflB ATP-dependent me 99.6 1.1E-15 2.4E-20 114.1 5.7 60 12-71 268-327 (644)
22 KOG0652|consensus 99.6 1.1E-15 2.3E-20 106.5 5.0 60 12-71 288-347 (424)
23 PLN00020 ribulose bisphosphate 99.6 2.1E-15 4.5E-20 107.8 6.2 67 3-71 224-303 (413)
24 TIGR01241 FtsH_fam ATP-depende 99.6 2.6E-15 5.7E-20 108.8 5.6 60 12-71 171-230 (495)
25 PTZ00454 26S protease regulato 99.6 7.1E-15 1.5E-19 105.0 6.4 59 13-71 263-321 (398)
26 CHL00195 ycf46 Ycf46; Provisio 99.5 9E-15 2E-19 106.7 6.1 61 9-71 337-397 (489)
27 KOG0651|consensus 99.5 5.5E-15 1.2E-19 103.8 4.8 61 11-71 248-308 (388)
28 CHL00206 ycf2 Ycf2; Provisiona 99.5 6.9E-15 1.5E-19 118.8 5.2 54 18-71 1753-1809(2281)
29 KOG0737|consensus 99.5 1E-14 2.2E-19 103.5 3.4 64 7-72 202-267 (386)
30 KOG0730|consensus 99.5 5.4E-14 1.2E-18 105.2 6.1 67 3-71 290-356 (693)
31 PRK03992 proteasome-activating 99.5 1.1E-13 2.3E-18 98.3 6.5 58 14-71 250-307 (389)
32 CHL00176 ftsH cell division pr 99.5 8.4E-14 1.8E-18 104.2 5.8 60 12-71 299-358 (638)
33 PTZ00361 26 proteosome regulat 99.4 1.3E-13 2.8E-18 99.7 5.1 58 14-71 302-359 (438)
34 KOG0743|consensus 99.4 2.1E-13 4.5E-18 98.7 4.8 54 17-70 319-374 (457)
35 COG1223 Predicted ATPase (AAA+ 99.4 1.7E-13 3.7E-18 95.1 2.9 56 14-71 234-289 (368)
36 KOG0740|consensus 99.4 3.5E-13 7.5E-18 97.2 3.2 65 5-71 259-325 (428)
37 TIGR01242 26Sp45 26S proteasom 99.3 2.4E-12 5.2E-17 90.2 6.7 58 14-71 241-298 (364)
38 TIGR01243 CDC48 AAA family ATP 99.3 4.4E-12 9.5E-17 95.6 6.1 67 5-71 285-351 (733)
39 PF00004 AAA: ATPase family as 99.0 1E-09 2.2E-14 65.4 5.1 54 11-65 78-132 (132)
40 KOG0744|consensus 98.7 8E-09 1.7E-13 73.5 3.3 58 12-71 275-332 (423)
41 COG0464 SpoVK ATPases of the A 98.5 3.9E-07 8.5E-12 66.0 5.9 65 6-71 91-155 (494)
42 KOG0742|consensus 98.5 1.5E-07 3.2E-12 69.1 3.4 66 2-71 455-520 (630)
43 TIGR00763 lon ATP-dependent pr 97.2 0.00048 1E-08 53.0 4.0 35 33-70 462-496 (775)
44 PRK11034 clpA ATP-dependent Cl 97.0 0.0011 2.4E-08 51.3 4.1 37 32-71 313-354 (758)
45 CHL00181 cbbX CbbX; Provisiona 96.8 0.003 6.4E-08 43.6 4.7 54 14-71 143-201 (287)
46 COG0714 MoxR-like ATPases [Gen 96.5 0.0063 1.4E-07 42.3 4.7 52 16-69 126-192 (329)
47 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0031 6.8E-08 49.3 3.0 37 32-71 314-355 (852)
48 PRK06964 DNA polymerase III su 96.2 0.0099 2.1E-07 42.2 4.5 50 17-71 147-196 (342)
49 TIGR02881 spore_V_K stage V sp 96.1 0.02 4.4E-07 38.5 5.6 51 16-70 127-182 (261)
50 PRK10865 protein disaggregatio 96.1 0.0052 1.1E-07 48.1 3.0 37 32-71 305-346 (857)
51 TIGR02639 ClpA ATP-dependent C 96.1 0.007 1.5E-07 46.4 3.7 37 32-71 309-350 (731)
52 TIGR00635 ruvB Holliday juncti 95.9 0.022 4.7E-07 38.7 4.9 36 34-71 129-164 (305)
53 PRK07940 DNA polymerase III su 95.8 0.014 3E-07 42.1 3.9 50 17-71 132-181 (394)
54 TIGR02880 cbbX_cfxQ probable R 95.7 0.0091 2E-07 41.0 2.4 53 14-70 142-199 (284)
55 PRK00080 ruvB Holliday junctio 95.4 0.013 2.9E-07 40.6 2.5 36 34-71 150-185 (328)
56 PRK11331 5-methylcytosine-spec 95.3 0.024 5.3E-07 41.9 3.7 48 15-65 286-357 (459)
57 KOG0735|consensus 95.3 0.032 6.9E-07 43.8 4.4 61 11-71 516-578 (952)
58 KOG0736|consensus 94.9 0.051 1.1E-06 42.9 4.5 52 17-71 516-568 (953)
59 TIGR03346 chaperone_ClpB ATP-d 94.8 0.034 7.3E-07 43.5 3.5 37 32-71 300-341 (852)
60 cd00009 AAA The AAA+ (ATPases 94.8 0.094 2E-06 30.3 4.6 45 18-64 100-150 (151)
61 TIGR02640 gas_vesic_GvpN gas v 94.7 0.062 1.3E-06 36.3 4.1 34 34-70 151-189 (262)
62 PRK05707 DNA polymerase III su 94.7 0.066 1.4E-06 37.7 4.4 52 15-71 119-170 (328)
63 TIGR00678 holB DNA polymerase 94.6 0.074 1.6E-06 33.8 4.2 49 17-70 111-159 (188)
64 PHA02544 44 clamp loader, smal 93.9 0.11 2.3E-06 35.5 4.1 46 20-70 119-164 (316)
65 PRK06090 DNA polymerase III su 93.6 0.17 3.6E-06 35.8 4.6 51 16-71 122-172 (319)
66 PRK13407 bchI magnesium chelat 93.4 0.2 4.4E-06 35.5 4.8 52 15-68 141-204 (334)
67 PRK08769 DNA polymerase III su 93.2 0.18 3.8E-06 35.6 4.3 52 15-71 126-177 (319)
68 PF07728 AAA_5: AAA domain (dy 92.6 0.072 1.6E-06 32.1 1.4 40 16-57 79-139 (139)
69 PRK07993 DNA polymerase III su 92.6 0.2 4.3E-06 35.4 3.8 51 15-70 121-171 (334)
70 PRK10787 DNA-binding ATP-depen 92.4 0.27 5.8E-06 38.5 4.6 48 19-70 437-497 (784)
71 PRK06871 DNA polymerase III su 92.3 0.31 6.7E-06 34.5 4.5 51 15-70 120-170 (325)
72 TIGR02397 dnaX_nterm DNA polym 92.2 0.16 3.4E-06 35.0 2.9 49 17-70 132-180 (355)
73 PRK14962 DNA polymerase III su 91.9 0.35 7.6E-06 35.7 4.5 48 18-70 133-180 (472)
74 TIGR00362 DnaA chromosomal rep 91.7 0.16 3.5E-06 36.2 2.6 49 21-71 220-273 (405)
75 PF05673 DUF815: Protein of un 91.6 0.3 6.5E-06 33.6 3.6 53 18-70 123-198 (249)
76 PRK14956 DNA polymerase III su 91.4 0.32 6.9E-06 36.4 3.9 48 16-68 135-182 (484)
77 PRK12323 DNA polymerase III su 91.3 0.13 2.9E-06 39.9 1.9 50 16-70 138-187 (700)
78 PRK09112 DNA polymerase III su 90.8 0.6 1.3E-05 33.2 4.7 50 16-70 155-204 (351)
79 TIGR02902 spore_lonB ATP-depen 90.7 0.27 5.8E-06 36.7 2.9 32 35-69 235-266 (531)
80 TIGR02030 BchI-ChlI magnesium 90.4 0.67 1.5E-05 32.9 4.7 51 16-68 145-207 (337)
81 PRK07003 DNA polymerase III su 90.4 0.53 1.1E-05 37.3 4.4 48 17-69 134-181 (830)
82 PRK07471 DNA polymerase III su 90.1 0.87 1.9E-05 32.6 5.1 50 16-70 155-204 (365)
83 PRK00149 dnaA chromosomal repl 90.1 0.21 4.5E-06 36.2 1.9 50 20-71 231-285 (450)
84 TIGR02928 orc1/cdc6 family rep 90.1 0.58 1.3E-05 32.4 4.1 36 33-70 164-203 (365)
85 PRK08058 DNA polymerase III su 90.0 0.58 1.2E-05 32.8 4.0 50 16-70 124-173 (329)
86 PRK06893 DNA replication initi 89.9 0.24 5.2E-06 32.8 2.0 50 22-71 113-166 (229)
87 PRK05563 DNA polymerase III su 89.8 0.59 1.3E-05 35.2 4.2 50 16-70 133-182 (559)
88 PRK14961 DNA polymerase III su 89.6 0.66 1.4E-05 32.8 4.1 49 17-70 134-182 (363)
89 PRK07994 DNA polymerase III su 89.5 0.71 1.5E-05 35.6 4.4 50 16-70 133-182 (647)
90 PRK07133 DNA polymerase III su 88.9 0.74 1.6E-05 36.0 4.2 49 17-70 133-181 (725)
91 PRK14963 DNA polymerase III su 88.0 1.5 3.2E-05 32.8 5.1 50 16-70 130-179 (504)
92 CHL00081 chlI Mg-protoporyphyr 87.9 0.78 1.7E-05 32.9 3.5 51 16-68 158-220 (350)
93 PF13177 DNA_pol3_delta2: DNA 87.7 1.2 2.6E-05 28.1 4.0 46 14-64 114-159 (162)
94 PHA02244 ATPase-like protein 87.5 1.2 2.6E-05 32.5 4.3 34 33-69 220-264 (383)
95 PRK06645 DNA polymerase III su 87.2 1.1 2.4E-05 33.6 4.1 49 17-70 143-191 (507)
96 PRK09862 putative ATP-dependen 86.9 1.6 3.5E-05 32.7 4.8 53 15-69 307-391 (506)
97 PRK08699 DNA polymerase III su 86.6 0.7 1.5E-05 32.6 2.7 50 16-70 127-176 (325)
98 PRK06305 DNA polymerase III su 85.7 1.5 3.1E-05 32.3 4.0 49 17-70 136-184 (451)
99 PRK05564 DNA polymerase III su 85.7 1.8 3.8E-05 29.8 4.2 50 16-70 107-156 (313)
100 CHL00095 clpC Clp protease ATP 85.7 0.81 1.8E-05 35.8 2.8 37 32-71 305-346 (821)
101 PRK13342 recombination factor 85.3 2 4.3E-05 30.9 4.5 44 20-70 110-155 (413)
102 TIGR01650 PD_CobS cobaltochela 85.0 1.2 2.7E-05 31.7 3.3 35 34-70 178-224 (327)
103 KOG2004|consensus 84.9 1 2.2E-05 35.8 3.0 23 34-58 554-576 (906)
104 PRK06581 DNA polymerase III su 84.8 2.6 5.7E-05 29.3 4.7 50 15-69 102-151 (263)
105 PRK07276 DNA polymerase III su 84.6 1.8 3.9E-05 30.2 3.9 47 15-66 117-163 (290)
106 PRK14965 DNA polymerase III su 84.3 0.91 2E-05 34.3 2.5 49 16-69 133-181 (576)
107 PRK14959 DNA polymerase III su 84.3 1.3 2.8E-05 34.1 3.3 49 17-70 134-182 (624)
108 PRK14970 DNA polymerase III su 84.1 2.7 5.9E-05 29.4 4.7 48 18-70 124-171 (367)
109 COG2607 Predicted ATPase (AAA+ 83.9 2.3 4.9E-05 29.9 4.1 52 19-70 157-230 (287)
110 smart00350 MCM minichromosome 83.2 1.6 3.4E-05 32.4 3.3 36 33-70 342-391 (509)
111 PRK04132 replication factor C 82.9 2.7 5.9E-05 33.5 4.6 49 16-69 644-692 (846)
112 PRK14969 DNA polymerase III su 82.3 1.4 3.1E-05 32.9 2.8 50 16-70 133-182 (527)
113 TIGR03420 DnaA_homol_Hda DnaA 82.0 0.91 2E-05 29.2 1.5 48 21-70 111-163 (226)
114 TIGR02031 BchD-ChlD magnesium 81.6 3.1 6.6E-05 31.6 4.4 50 15-66 97-160 (589)
115 PRK05896 DNA polymerase III su 81.4 1.8 3.9E-05 33.3 3.1 49 17-70 134-182 (605)
116 smart00763 AAA_PrkA PrkA AAA d 81.3 2.6 5.7E-05 30.5 3.8 51 15-68 249-315 (361)
117 PRK00411 cdc6 cell division co 81.3 3.5 7.7E-05 28.8 4.4 51 17-70 157-211 (394)
118 PRK08451 DNA polymerase III su 81.0 3.2 7E-05 31.4 4.3 51 15-70 130-180 (535)
119 PRK12422 chromosomal replicati 81.0 1.2 2.6E-05 32.6 2.0 37 33-71 235-276 (445)
120 PRK06647 DNA polymerase III su 80.9 2.3 4.9E-05 32.2 3.5 50 16-70 133-182 (563)
121 PRK13531 regulatory ATPase Rav 80.7 2.9 6.4E-05 31.5 4.0 52 15-68 120-182 (498)
122 PRK07399 DNA polymerase III su 80.6 3.2 7E-05 29.1 4.0 49 16-70 138-186 (314)
123 PRK14953 DNA polymerase III su 80.6 2.4 5.1E-05 31.5 3.4 49 17-70 134-182 (486)
124 PRK14952 DNA polymerase III su 80.4 2.8 6.1E-05 32.0 3.8 49 16-69 132-180 (584)
125 PRK07764 DNA polymerase III su 80.2 3 6.5E-05 33.1 4.0 49 16-69 134-182 (824)
126 PRK14948 DNA polymerase III su 80.1 3.2 6.9E-05 31.8 4.0 49 16-69 135-183 (620)
127 smart00382 AAA ATPases associa 80.1 2.5 5.4E-05 23.7 2.8 33 33-67 115-148 (148)
128 PRK12402 replication factor C 80.0 5.6 0.00012 27.0 4.9 47 19-70 142-188 (337)
129 PRK09087 hypothetical protein; 79.2 1.4 3.1E-05 29.3 1.8 48 22-71 106-158 (226)
130 PRK07132 DNA polymerase III su 78.9 4.7 0.0001 28.2 4.3 51 15-70 103-153 (299)
131 PRK14949 DNA polymerase III su 78.6 4.3 9.2E-05 32.9 4.4 50 16-70 133-182 (944)
132 PRK08084 DNA replication initi 78.4 1.2 2.5E-05 29.7 1.2 35 35-71 133-172 (235)
133 PRK05642 DNA replication initi 78.3 1.8 4E-05 28.7 2.1 50 20-71 117-171 (234)
134 PRK08903 DnaA regulatory inact 78.2 2.3 5E-05 27.6 2.5 49 20-70 108-161 (227)
135 PRK08727 hypothetical protein; 77.9 1.3 2.9E-05 29.3 1.3 46 24-71 117-167 (233)
136 PRK11034 clpA ATP-dependent Cl 77.3 4.9 0.00011 31.6 4.4 54 15-70 570-657 (758)
137 PRK14957 DNA polymerase III su 77.1 4.3 9.4E-05 30.8 4.0 50 16-70 133-182 (546)
138 COG0466 Lon ATP-dependent Lon 76.8 2.1 4.6E-05 33.8 2.3 23 34-58 466-488 (782)
139 PRK05818 DNA polymerase III su 76.8 4.9 0.00011 27.9 3.9 47 15-66 101-147 (261)
140 PRK06620 hypothetical protein; 76.5 2.1 4.5E-05 28.2 2.0 46 22-70 102-151 (214)
141 PRK13406 bchD magnesium chelat 76.4 6.5 0.00014 30.0 4.7 57 12-70 103-173 (584)
142 PRK14964 DNA polymerase III su 76.2 3.1 6.8E-05 31.1 3.0 50 16-70 130-179 (491)
143 TIGR02639 ClpA ATP-dependent C 76.1 5.5 0.00012 30.9 4.4 54 15-70 566-653 (731)
144 PRK08691 DNA polymerase III su 76.1 2.6 5.7E-05 33.0 2.6 50 16-70 133-182 (709)
145 PRK14951 DNA polymerase III su 75.7 4.4 9.6E-05 31.2 3.7 50 16-70 138-187 (618)
146 PRK09111 DNA polymerase III su 75.4 5.4 0.00012 30.5 4.1 49 17-70 147-195 (598)
147 TIGR02903 spore_lon_C ATP-depe 74.6 3.3 7.2E-05 31.6 2.8 32 35-69 324-356 (615)
148 TIGR02442 Cob-chelat-sub cobal 74.4 7.2 0.00016 29.8 4.6 51 15-67 139-201 (633)
149 PRK14958 DNA polymerase III su 73.9 3.1 6.7E-05 31.1 2.5 49 16-69 133-181 (509)
150 PRK14960 DNA polymerase III su 73.7 4.6 0.0001 31.7 3.4 49 17-70 133-181 (702)
151 COG2812 DnaX DNA polymerase II 73.6 6.2 0.00013 29.9 4.0 40 14-57 131-170 (515)
152 PF07726 AAA_3: ATPase family 72.1 3.9 8.4E-05 25.7 2.2 43 13-57 73-129 (131)
153 PRK05917 DNA polymerase III su 71.9 7.6 0.00017 27.2 3.9 46 15-65 108-153 (290)
154 PRK04195 replication factor C 71.1 12 0.00027 27.4 5.0 47 17-70 117-164 (482)
155 COG0470 HolB ATPase involved i 71.1 13 0.00028 24.9 4.8 49 16-69 123-171 (325)
156 PRK14088 dnaA chromosomal repl 69.8 2.8 6E-05 30.6 1.4 49 21-71 215-268 (440)
157 TIGR03346 chaperone_ClpB ATP-d 69.4 8.9 0.00019 30.3 4.2 54 15-70 680-767 (852)
158 PLN03025 replication factor C 67.9 8.6 0.00019 26.5 3.5 48 18-70 115-162 (319)
159 PF05496 RuvB_N: Holliday junc 66.3 7.8 0.00017 26.6 2.9 32 34-67 149-180 (233)
160 PRK14086 dnaA chromosomal repl 62.1 6.4 0.00014 30.4 2.1 48 21-71 398-451 (617)
161 PRK00440 rfc replication facto 61.9 18 0.00039 24.2 4.1 48 18-70 118-165 (319)
162 COG0542 clpA ATP-binding subun 61.6 3 6.5E-05 33.1 0.3 36 33-71 298-338 (786)
163 PRK14971 DNA polymerase III su 61.5 18 0.00039 27.8 4.4 49 17-70 136-184 (614)
164 PF00308 Bac_DnaA: Bacterial d 61.1 6 0.00013 26.1 1.6 52 18-71 115-171 (219)
165 TIGR00368 Mg chelatase-related 57.3 35 0.00076 25.6 5.2 52 16-69 309-394 (499)
166 PRK14950 DNA polymerase III su 57.1 21 0.00046 27.1 4.1 48 17-69 135-182 (585)
167 COG1239 ChlI Mg-chelatase subu 56.8 29 0.00064 25.8 4.7 54 14-69 156-221 (423)
168 PRK08485 DNA polymerase III su 54.5 16 0.00036 24.6 2.8 40 15-58 67-106 (206)
169 PRK14954 DNA polymerase III su 53.6 22 0.00048 27.4 3.8 49 17-70 142-190 (620)
170 PRK14759 potassium-transportin 53.3 4.5 9.8E-05 19.1 0.0 8 50-57 22-29 (29)
171 PF03969 AFG1_ATPase: AFG1-lik 49.8 19 0.00041 25.9 2.7 27 17-47 145-172 (362)
172 PF00493 MCM: MCM2/3/5 family 49.6 18 0.00038 25.4 2.6 50 17-68 136-210 (331)
173 PRK10865 protein disaggregatio 49.0 28 0.00062 27.7 3.8 53 16-70 684-770 (857)
174 PTZ00112 origin recognition co 47.8 31 0.00068 28.7 3.8 37 32-70 900-940 (1164)
175 COG4811 Predicted membrane pro 46.4 7.3 0.00016 24.9 0.2 30 36-65 24-53 (152)
176 cd02071 MM_CoA_mut_B12_BD meth 44.2 33 0.00071 20.4 2.9 53 16-70 64-116 (122)
177 PRK14087 dnaA chromosomal repl 44.2 14 0.00031 27.1 1.4 49 21-71 227-280 (450)
178 cd01080 NAD_bind_m-THF_DH_Cycl 42.3 42 0.0009 21.5 3.3 30 36-67 90-119 (168)
179 TIGR00764 lon_rel lon-related 41.9 13 0.00027 28.6 0.9 29 34-64 268-301 (608)
180 COG0593 DnaA ATPase involved i 41.6 31 0.00067 25.5 2.8 48 22-71 197-249 (408)
181 PRK13341 recombination factor 39.0 35 0.00076 26.9 2.9 35 33-70 136-172 (725)
182 cd05212 NAD_bind_m-THF_DH_Cycl 38.5 25 0.00054 21.9 1.7 22 36-57 74-95 (140)
183 PF14289 DUF4369: Domain of un 38.3 34 0.00074 19.1 2.2 36 32-67 25-60 (106)
184 KOG2383|consensus 37.9 46 0.001 25.0 3.2 16 33-48 223-239 (467)
185 PRK14700 recombination factor 37.9 42 0.00092 23.8 3.0 36 31-69 5-42 (300)
186 COG4681 Uncharacterized protei 37.5 21 0.00045 23.4 1.3 53 12-69 34-90 (181)
187 PF09604 Potass_KdpF: F subuni 36.6 12 0.00026 17.0 0.0 8 50-57 18-25 (25)
188 PRK14955 DNA polymerase III su 36.5 25 0.00055 25.2 1.7 48 18-70 143-190 (397)
189 COG1485 Predicted ATPase [Gene 36.3 45 0.00098 24.4 2.9 26 18-47 149-175 (367)
190 PF13768 VWA_3: von Willebrand 35.4 93 0.002 18.6 3.9 48 2-50 5-52 (155)
191 KOG1434|consensus 34.6 42 0.00092 24.0 2.5 37 13-49 235-271 (335)
192 PF07152 YaeQ: YaeQ protein; 32.9 27 0.00058 22.9 1.2 53 13-69 35-90 (174)
193 COG4565 CitB Response regulato 32.8 28 0.0006 23.8 1.3 40 21-61 63-102 (224)
194 PF07724 AAA_2: AAA domain (Cd 32.8 48 0.001 21.0 2.4 32 15-46 92-132 (171)
195 PF09794 Avl9: Transport prote 30.6 39 0.00084 24.7 1.9 21 23-43 273-294 (379)
196 PF03709 OKR_DC_1_N: Orn/Lys/A 29.6 43 0.00093 19.8 1.7 47 17-65 52-98 (115)
197 cd05213 NAD_bind_Glutamyl_tRNA 28.2 81 0.0018 21.8 3.1 26 20-45 27-52 (311)
198 cd05125 Mth938_2P1-like Mth938 27.5 38 0.00081 20.5 1.2 34 23-58 45-78 (114)
199 PF04179 Init_tRNA_PT: Initiat 27.5 57 0.0012 24.4 2.3 28 26-53 78-105 (451)
200 TIGR02115 potass_kdpF K+-trans 26.2 14 0.0003 17.0 -0.7 9 50-58 17-25 (26)
201 PRK00103 rRNA large subunit me 25.9 1.4E+02 0.0031 18.9 3.7 44 17-65 83-126 (157)
202 COG1029 FwdB Formylmethanofura 25.8 1E+02 0.0022 23.0 3.3 36 28-63 136-182 (429)
203 PF12846 AAA_10: AAA-like doma 25.6 21 0.00045 23.4 -0.2 38 32-71 251-293 (304)
204 PF05272 VirE: Virulence-assoc 25.0 52 0.0011 21.5 1.6 27 35-64 141-168 (198)
205 COG1136 SalX ABC-type antimicr 24.6 1.8E+02 0.004 19.7 4.2 53 2-64 164-216 (226)
206 KOG3052|consensus 24.5 46 0.001 23.5 1.3 30 43-72 142-171 (311)
207 PTZ00111 DNA replication licen 23.8 98 0.0021 25.4 3.1 35 33-69 599-647 (915)
208 COG1674 FtsK DNA segregation A 23.7 89 0.0019 25.0 2.9 50 19-70 659-709 (858)
209 PF04430 DUF498: Protein of un 22.9 46 0.00099 19.6 0.9 32 24-57 45-76 (110)
210 PRK13796 GTPase YqeH; Provisio 22.1 88 0.0019 22.3 2.4 24 21-44 149-172 (365)
211 cd07985 LPLAT_GPAT Lysophospho 21.7 96 0.0021 21.2 2.4 30 19-53 11-40 (235)
212 PRK05201 hslU ATP-dependent pr 21.6 76 0.0017 23.8 2.0 53 16-70 275-339 (443)
213 PF12775 AAA_7: P-loop contain 21.3 60 0.0013 22.2 1.4 34 34-70 148-184 (272)
214 PF05201 GlutR_N: Glutamyl-tRN 21.0 51 0.0011 20.6 0.9 14 32-45 36-49 (152)
215 PF08734 GYD: GYD domain; Int 20.7 83 0.0018 18.0 1.7 18 54-71 43-60 (91)
No 1
>KOG0730|consensus
Probab=99.87 E-value=1.3e-22 Score=150.67 Aligned_cols=68 Identities=56% Similarity=0.909 Sum_probs=62.9
Q ss_pred ecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 4 GYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++.|++++++...|+++|||++|||+...++|+||||||||+.||+||+||||||+.||||+||.+++
T Consensus 540 ~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 540 AGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHH
Confidence 45666666688999999999999999888899999999999999999999999999999999999876
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4e-22 Score=140.98 Aligned_cols=62 Identities=40% Similarity=0.634 Sum_probs=57.7
Q ss_pred CCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 10 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++..+.+|.+-|||+||||++..++|-||+||||++.|||||+||||||++|+||+||.+++
T Consensus 266 ~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR 327 (406)
T COG1222 266 SGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGR 327 (406)
T ss_pred CchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHH
Confidence 34556779999999999999999999999999999999999999999999999999999886
No 3
>KOG0733|consensus
Probab=99.85 E-value=1.8e-21 Score=144.70 Aligned_cols=69 Identities=54% Similarity=0.829 Sum_probs=64.8
Q ss_pred eecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 3 TGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++++|+.+.++...|++||||++|||+....+|+||||||||+.||||++||||||+.+||++|+.+++
T Consensus 616 L~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 616 LVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred cCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 578888887888899999999999999888899999999999999999999999999999999999875
No 4
>KOG0734|consensus
Probab=99.81 E-value=1.7e-20 Score=138.30 Aligned_cols=68 Identities=38% Similarity=0.636 Sum_probs=60.8
Q ss_pred ecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 4 GYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++|........+..+||||.+|||++.+++|+||||||+|++||+||.||||||++|.||.||..++
T Consensus 409 G~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR 476 (752)
T KOG0734|consen 409 GGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGR 476 (752)
T ss_pred cccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccH
Confidence 44555554447889999999999999999999999999999999999999999999999999998775
No 5
>KOG0736|consensus
Probab=99.81 E-value=3.6e-20 Score=139.99 Aligned_cols=68 Identities=53% Similarity=0.795 Sum_probs=59.3
Q ss_pred eecccC--CCCcchhHHHHHHHHHHhhCCC--CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 3 TGYRRG--NDSTGVKDRVVNQLLTELDGVE--GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 3 ~~~~r~--~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
+++.|+ +++++.++|+++|||.+|||++ ..+.|+||||||||+.|||||+||||||+.+|++.++.++
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH
Confidence 345555 4457789999999999999996 5678999999999999999999999999999999987654
No 6
>KOG0733|consensus
Probab=99.77 E-value=2.1e-19 Score=133.75 Aligned_cols=70 Identities=34% Similarity=0.548 Sum_probs=62.4
Q ss_pred eecccCCCCcchhHHHHHHHHHHhhCCCCC----CCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhhC
Q psy3374 3 TGYRRGNDSTGVKDRVVNQLLTELDGVEGL----EGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFAS 72 (72)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~----~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~~ 72 (72)
++++|...+.+..+|+++|||+.||++... +.|+||||||||+.|||||+|+||||++|.++.|+..+++
T Consensus 294 I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~ 367 (802)
T KOG0733|consen 294 ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETARE 367 (802)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHH
Confidence 456777777778889999999999999543 5699999999999999999999999999999999998874
No 7
>KOG0735|consensus
Probab=99.76 E-value=8.8e-19 Score=132.05 Aligned_cols=69 Identities=68% Similarity=1.081 Sum_probs=65.6
Q ss_pred eecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 3 TGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++++||.++.+..+|++||||++|||...-.+|+|+|||.||+.|||||+||||||+.++-++|++.+|
T Consensus 772 iAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 772 IAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred cCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 578899888899999999999999999988999999999999999999999999999999999998875
No 8
>KOG0738|consensus
Probab=99.75 E-value=3.7e-19 Score=127.38 Aligned_cols=68 Identities=37% Similarity=0.474 Sum_probs=59.2
Q ss_pred eecccC-CCCcchhHHHHHHHHHHhhCCCC----CCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhhC
Q psy3374 3 TGYRRG-NDSTGVKDRVVNQLLTELDGVEG----LEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFAS 72 (72)
Q Consensus 3 ~~~~r~-~~~~~~~~~~~~~ll~~ld~~~~----~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~~ 72 (72)
+|++|+ +++++..+|+.++||.||||+.. .+.|+|+||||.||+||+||+| ||.++|+||+||.++++
T Consensus 316 lcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~ 388 (491)
T KOG0738|consen 316 LCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARS 388 (491)
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHH
Confidence 466666 45688899999999999999932 2349999999999999999999 99999999999999874
No 9
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.9e-18 Score=120.80 Aligned_cols=68 Identities=53% Similarity=0.811 Sum_probs=60.6
Q ss_pred ecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 4 GYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++.|+.+.++...+++++||.+||++...++|+||+|||+|+.+|+|++||||||++|+|++||.+++
T Consensus 348 ~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 348 ASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred hccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH
Confidence 34555555555579999999999999988899999999999999999999999999999999999876
No 10
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1e-17 Score=124.17 Aligned_cols=62 Identities=45% Similarity=0.821 Sum_probs=56.7
Q ss_pred CCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 10 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++.+.+..+||+|.+|||+..+++|+|+++||||+-+|+||+||||||++|.|++||..++
T Consensus 264 ggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 264 GGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred CCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhH
Confidence 34556668999999999999988899999999999999999999999999999999998765
No 11
>KOG0731|consensus
Probab=99.70 E-value=2.6e-17 Score=124.44 Aligned_cols=62 Identities=45% Similarity=0.797 Sum_probs=57.0
Q ss_pred CCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 10 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+.+.+.+..+||||.+|||+...++|+|+|+||+|+.||+||+||||||++|++++||..++
T Consensus 426 ~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 426 GGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR 487 (774)
T ss_pred CCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhh
Confidence 34556778999999999999888889999999999999999999999999999999998875
No 12
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.70 E-value=2.8e-17 Score=120.40 Aligned_cols=67 Identities=52% Similarity=0.827 Sum_probs=57.9
Q ss_pred cccCCC-CcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGND-STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+|+++ ++....+++++||++||++...++++||+|||+++.||||++||||||.+|+|++|+.+++
T Consensus 303 ~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r 370 (512)
T TIGR03689 303 RTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAA 370 (512)
T ss_pred cccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHH
Confidence 344433 3344568899999999999877789999999999999999999999999999999999876
No 13
>KOG0741|consensus
Probab=99.69 E-value=9.9e-18 Score=123.74 Aligned_cols=69 Identities=49% Similarity=0.762 Sum_probs=62.6
Q ss_pred eecccCCCC--cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 3 TGYRRGNDS--TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 3 ~~~~r~~~~--~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+|.+|++.. .+..+.++||||+.|||+..-++++|||.|||++.||+||+|||||..++++.+||+++|
T Consensus 336 ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gR 406 (744)
T KOG0741|consen 336 ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGR 406 (744)
T ss_pred HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCc
Confidence 577787543 567889999999999999888899999999999999999999999999999999999875
No 14
>KOG0728|consensus
Probab=99.67 E-value=8.4e-17 Score=111.41 Aligned_cols=61 Identities=38% Similarity=0.602 Sum_probs=56.8
Q ss_pred CcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 11 ~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++++.+|..-+||+||||+...+++-||.|||+.+-|||||+||||.|++|+||.|+++++
T Consensus 263 gdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 263 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred ccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHH
Confidence 3556678889999999999999999999999999999999999999999999999999886
No 15
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.66 E-value=1.9e-16 Score=119.05 Aligned_cols=67 Identities=52% Similarity=0.814 Sum_probs=58.6
Q ss_pred cccCCC-CcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGND-STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++|+.. .+...++++++||.+||++...++++||+|||+|+.||+|++||||||+.|+|++||.+++
T Consensus 560 ~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R 627 (733)
T TIGR01243 560 PARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEAR 627 (733)
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHH
Confidence 344433 3445679999999999999888899999999999999999999999999999999999876
No 16
>KOG0727|consensus
Probab=99.66 E-value=1.4e-16 Score=110.42 Aligned_cols=61 Identities=38% Similarity=0.631 Sum_probs=56.5
Q ss_pred CcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 11 ~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+..+++-+||++|||+....+|-||.|||+.+.|||||+||||+|++|+||+||.-+.
T Consensus 271 adrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqk 331 (408)
T KOG0727|consen 271 ADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 331 (408)
T ss_pred ccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhh
Confidence 4456779999999999999999999999999999999999999999999999999998764
No 17
>KOG0729|consensus
Probab=99.64 E-value=3.9e-16 Score=108.86 Aligned_cols=62 Identities=40% Similarity=0.642 Sum_probs=56.7
Q ss_pred CCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 10 DSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 10 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++.+.++..-+++.||||+...+++-|+.|||+|+.|||||+||||+|++++|++||.+++
T Consensus 292 ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegr 353 (435)
T KOG0729|consen 292 GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGR 353 (435)
T ss_pred CCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccccc
Confidence 34455678888999999999999999999999999999999999999999999999999875
No 18
>KOG0726|consensus
Probab=99.63 E-value=3.4e-16 Score=109.88 Aligned_cols=58 Identities=36% Similarity=0.603 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+.+|..-+||+||||+...+.|-||.|||+.+.|||||+||||.|++|+|++||...+
T Consensus 304 EiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~Tk 361 (440)
T KOG0726|consen 304 EIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 361 (440)
T ss_pred HHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhh
Confidence 4567778999999999998899999999999999999999999999999999998764
No 19
>KOG0739|consensus
Probab=99.63 E-value=1.6e-16 Score=111.64 Aligned_cols=67 Identities=25% Similarity=0.459 Sum_probs=62.4
Q ss_pred eecccCCCCcchhHHHHHHHHHHhhCC-CCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 3 TGYRRGNDSTGVKDRVVNQLLTELDGV-EGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~ll~~ld~~-~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+|++|+.++++..+|+.++||.||.|+ ..+.+|+|+||||-||.||.|++| ||+++||||+|+..++
T Consensus 237 lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR 304 (439)
T KOG0739|consen 237 LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHAR 304 (439)
T ss_pred hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHh
Confidence 578888999999999999999999999 456689999999999999999999 9999999999998876
No 20
>KOG0732|consensus
Probab=99.62 E-value=3.6e-16 Score=121.12 Aligned_cols=67 Identities=37% Similarity=0.629 Sum_probs=59.8
Q ss_pred cccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+.|++-....+..+++.||..|||+...+.|+||||||||+++||||+||||||+.++|++|+.+++
T Consensus 377 pvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar 443 (1080)
T KOG0732|consen 377 PVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDAR 443 (1080)
T ss_pred ccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHH
Confidence 3444444456678999999999999999999999999999999999999999999999999999886
No 21
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=1.1e-15 Score=114.09 Aligned_cols=60 Identities=47% Similarity=0.846 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+....+++++||.+||++...++++||+|||+|+.||+|++||||||++|+|++||.+++
T Consensus 268 ~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 268 HDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred chHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 345568999999999999888899999999999999999999999999999999998765
No 22
>KOG0652|consensus
Probab=99.60 E-value=1.1e-15 Score=106.47 Aligned_cols=60 Identities=38% Similarity=0.570 Sum_probs=56.0
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
..+.+|..-+||+||||++++.+|-||+|||+.+-|||||+|.||+|++|+||.|+.+++
T Consensus 288 DREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aR 347 (424)
T KOG0652|consen 288 DREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEAR 347 (424)
T ss_pred cHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHH
Confidence 445678888999999999999999999999999999999999999999999999999886
No 23
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.59 E-value=2.1e-15 Score=107.78 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=52.9
Q ss_pred eecccCCCCcchhHHHH-HHHHHHhhCC------------CCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 3 TGYRRGNDSTGVKDRVV-NQLLTELDGV------------EGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 3 ~~~~r~~~~~~~~~~~~-~~ll~~ld~~------------~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
+++++++.+.....+++ ++||++||+. ...++|+||+|||+|+.|||||+||||||+.| .+|+.+
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 35566555545545665 8999999873 23567999999999999999999999999975 589998
Q ss_pred hh
Q psy3374 70 FA 71 (72)
Q Consensus 70 ~~ 71 (72)
++
T Consensus 302 ~R 303 (413)
T PLN00020 302 DR 303 (413)
T ss_pred HH
Confidence 76
No 24
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.58 E-value=2.6e-15 Score=108.78 Aligned_cols=60 Identities=45% Similarity=0.784 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+....+++++||.+||++.+.++++||+|||+|+.||+|++||||||++|+|++||.+++
T Consensus 171 ~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 171 NDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred cHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 344568999999999999888889999999999999999999999999999999999876
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.56 E-value=7.1e-15 Score=104.95 Aligned_cols=59 Identities=39% Similarity=0.645 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+.+.+||.+||++....+++||+|||+|+.||||++||||||++|+|++|+.+++
T Consensus 263 ~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R 321 (398)
T PTZ00454 263 REVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 321 (398)
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHH
Confidence 34568899999999999877789999999999999999999999999999999999876
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.55 E-value=9e-15 Score=106.74 Aligned_cols=61 Identities=25% Similarity=0.424 Sum_probs=53.9
Q ss_pred CCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 9 NDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 9 ~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.++...+++++||++|+.. ..+|+||||||+++.||+|++|+||||+.|+|++|+.+++
T Consensus 337 ~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 337 KGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 344556789999999999953 4579999999999999999999999999999999999876
No 27
>KOG0651|consensus
Probab=99.55 E-value=5.5e-15 Score=103.83 Aligned_cols=61 Identities=41% Similarity=0.652 Sum_probs=55.7
Q ss_pred CcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 11 ~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.++.+-+||.+||+++..++|-+|.|||+|+.|||||+||||+|+++++|+|+..++
T Consensus 248 ~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 248 SDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred hhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhc
Confidence 3456678888999999999999999999999999999999999999999999999998764
No 28
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.54 E-value=6.9e-15 Score=118.81 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=48.6
Q ss_pred HHHHHHHHhhCCC---CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 18 VVNQLLTELDGVE---GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 18 ~~~~ll~~ld~~~---~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+++||.+||+.. ...+|+||||||+|+.|||||+||||||++|+|++|+..++
T Consensus 1753 tL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R 1809 (2281)
T CHL00206 1753 SLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQ 1809 (2281)
T ss_pred hHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhH
Confidence 4899999999873 35679999999999999999999999999999999998654
No 29
>KOG0737|consensus
Probab=99.50 E-value=1e-14 Score=103.49 Aligned_cols=64 Identities=30% Similarity=0.468 Sum_probs=57.9
Q ss_pred cCCCCcchhHHHHHHHHHHhhCCCCCC--CeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhhC
Q psy3374 7 RGNDSTGVKDRVVNQLLTELDGVEGLE--GVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFAS 72 (72)
Q Consensus 7 r~~~~~~~~~~~~~~ll~~ld~~~~~~--~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~~ 72 (72)
|.+++++....+.+||+..|||+..++ +|+|+||||||.+||.|++| ||.+.++|++|+.++++
T Consensus 202 R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~ 267 (386)
T KOG0737|consen 202 RRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRR 267 (386)
T ss_pred cccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHH
Confidence 367778889999999999999996554 49999999999999999999 99999999999988763
No 30
>KOG0730|consensus
Probab=99.49 E-value=5.4e-14 Score=105.22 Aligned_cols=67 Identities=42% Similarity=0.551 Sum_probs=59.9
Q ss_pred eecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 3 TGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+|++|..... ...++++|++.+||++....+++|++|||+|+.||++++| ||||+.++++.|+..++
T Consensus 290 l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~R 356 (693)
T KOG0730|consen 290 LCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGR 356 (693)
T ss_pred hCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhH
Confidence 4666665554 6789999999999999888899999999999999999999 99999999999998765
No 31
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.47 E-value=1.1e-13 Score=98.26 Aligned_cols=58 Identities=40% Similarity=0.643 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.+.+|++++|++....++.||+|||+++.+|+|++||||||+.|+|++|+.+++
T Consensus 250 ~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R 307 (389)
T PRK03992 250 EVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGR 307 (389)
T ss_pred HHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHH
Confidence 4567888999999999777789999999999999999999999999999999999876
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.46 E-value=8.4e-14 Score=104.24 Aligned_cols=60 Identities=45% Similarity=0.762 Sum_probs=55.3
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+.....++++||.+||++....+|+||+|||+++.+|+|++||||||++|+|++||.+++
T Consensus 299 ~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 299 NDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred cHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence 445568899999999999888899999999999999999999999999999999999876
No 33
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.44 E-value=1.3e-13 Score=99.68 Aligned_cols=58 Identities=36% Similarity=0.567 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.+.+||.+||++....++.||+|||+++.||+|++||||||++|+|++||.+++
T Consensus 302 e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 302 EIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred HHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHH
Confidence 4567888999999999777789999999999999999999999999999999999876
No 34
>KOG0743|consensus
Probab=99.42 E-value=2.1e-13 Score=98.68 Aligned_cols=54 Identities=30% Similarity=0.410 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhCCCCC--CCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGL--EGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~--~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
-.++.||+.+||+-+. +--++|.|||+++.|||||+||||+|.+|+++.|+.++
T Consensus 319 VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 319 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred eehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence 5689999999999322 34678899999999999999999999999999999876
No 35
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.39 E-value=1.7e-13 Score=95.12 Aligned_cols=56 Identities=38% Similarity=0.638 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....++|.||++|||+.++.+|+.||+||+|+.||+|++. ||..+|+|.+|+.+++
T Consensus 234 DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr 289 (368)
T COG1223 234 DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEER 289 (368)
T ss_pred cHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHH
Confidence 4557999999999999999999999999999999999999 9999999999999875
No 36
>KOG0740|consensus
Probab=99.36 E-value=3.5e-13 Score=97.23 Aligned_cols=65 Identities=28% Similarity=0.416 Sum_probs=57.7
Q ss_pred cccCCCCcchhHHHHHHHHHHhhCC--CCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGNDSTGVKDRVVNQLLTELDGV--EGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~~~~~~~~~~~~ll~~ld~~--~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+|..+.++...++.++||.++++. ...++|+||||||+||.+|.|++| ||-+.++|++||.+++
T Consensus 259 s~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr 325 (428)
T KOG0740|consen 259 SKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETR 325 (428)
T ss_pred hhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHH
Confidence 3456666777889999999999998 445689999999999999999999 9999999999999986
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.35 E-value=2.4e-12 Score=90.17 Aligned_cols=58 Identities=47% Similarity=0.745 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.+.+++.+++++...+++.||+|||+++.+|++++||||||+.|+|++|+.+++
T Consensus 241 ~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r 298 (364)
T TIGR01242 241 EVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGR 298 (364)
T ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHH
Confidence 4557888999999998777789999999999999999999999999999999998875
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.30 E-value=4.4e-12 Score=95.64 Aligned_cols=67 Identities=45% Similarity=0.689 Sum_probs=58.0
Q ss_pred cccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++++...++...+++++|++.||++.....++||++||+++.||++++|+||||+.|++++|+.+++
T Consensus 285 ~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R 351 (733)
T TIGR01243 285 PKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRAR 351 (733)
T ss_pred ccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHH
Confidence 3444444455678999999999999877889999999999999999999999999999999998865
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.99 E-value=1e-09 Score=65.37 Aligned_cols=54 Identities=39% Similarity=0.620 Sum_probs=46.7
Q ss_pred CcchhHHHHHHHHHHhhCCCCC-CCeEEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 11 STGVKDRVVNQLLTELDGVEGL-EGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 11 ~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
.+.....++++|+..|+..... .+++||+|||+++.+|++++| |||+.+|++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4455678899999999998654 569999999999999999999 99999999985
No 40
>KOG0744|consensus
Probab=98.74 E-value=8e-09 Score=73.54 Aligned_cols=58 Identities=28% Similarity=0.313 Sum_probs=53.4
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+..-|++|.+|+|||.++..++|++++|+|-.+.||-|+.. |-|-+.|||.|+.++.
T Consensus 275 psDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 275 PSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAI 332 (423)
T ss_pred CchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHH
Confidence 334559999999999999999999999999999999999999 9999999999998764
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.9e-07 Score=66.02 Aligned_cols=65 Identities=45% Similarity=0.693 Sum_probs=55.9
Q ss_pred ccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 6 ~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++.........+++++++..||++.... ++++++||++..+|++++++|||++.+++..|+.+.+
T Consensus 91 ~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 91 KRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred CccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 3334445567799999999999998444 9999999999999999999999999999999998753
No 42
>KOG0742|consensus
Probab=98.46 E-value=1.5e-07 Score=69.12 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=53.2
Q ss_pred eeecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 2 ITGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
|+|.+....-++..+..+|.||-.-. ..+..++++.+||+|.++|.|+-. |||..|+|++|..|++
T Consensus 455 FLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEER 520 (630)
T KOG0742|consen 455 FLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEER 520 (630)
T ss_pred HHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHH
Confidence 34555444556777888999886554 345579999999999999999999 9999999999999886
No 43
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.18 E-value=0.00048 Score=53.00 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 33 EGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 33 ~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.++++|+|||.++.||++|++ ||+ .|+++.|+.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e 496 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEE 496 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHH
Confidence 468999999999999999999 995 78999888654
No 44
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0011 Score=51.29 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=32.2
Q ss_pred CCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.||||||.++ ..|+||.| ||+ .|+|+.|+.+++
T Consensus 313 ~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~ 354 (758)
T PRK11034 313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEET 354 (758)
T ss_pred CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHH
Confidence 45799999999875 58999999 995 899999999875
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=96.78 E-value=0.003 Score=43.61 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....++..|+..|+.. .++++||+|++... .++|++.+ ||+..|+|+.++.++.
T Consensus 143 ~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el 201 (287)
T CHL00181 143 YGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEEL 201 (287)
T ss_pred hHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHH
Confidence 3457788899999854 34677888775321 34699999 9999999999988653
No 46
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.47 E-value=0.0063 Score=42.27 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCC----------CCCCCeEEEEecC-----CCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGV----------EGLEGVYVVGATS-----RPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~----------~~~~~v~vi~aTn-----~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
..+.+.||..|+.- .-....+|++|+| .-..+++|+++ ||-..+++++|+.+
T Consensus 126 p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~ 192 (329)
T COG0714 126 PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSE 192 (329)
T ss_pred HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCch
Confidence 46777888888772 2235689999999 77889999999 99999999999544
No 47
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.37 E-value=0.0031 Score=49.28 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.+||||+..+ .+|+||.| || ..|+|+.|+.++.
T Consensus 314 ~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~ 355 (852)
T TIGR03345 314 RGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETA 355 (852)
T ss_pred CCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHH
Confidence 45689999999754 49999999 99 5899999998864
No 48
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.0099 Score=42.25 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...|.||..|+. ..+++++|.+|++|+.|.|.++. |+ ..|.|+.|+.++.
T Consensus 147 ~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~ 196 (342)
T PRK06964 147 AAANALLKTLEE--PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAA 196 (342)
T ss_pred HHHHHHHHHhcC--CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHH
Confidence 456889999984 45578899999999999999999 99 7899999987653
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.13 E-value=0.02 Score=38.48 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCC-----CCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRP-----DIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~-----~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+..|+..|+.. ..++++|++++.. ..++|++.+ ||+..|+++.++.++
T Consensus 127 ~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~e 182 (261)
T TIGR02881 127 KEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEE 182 (261)
T ss_pred HHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHH
Confidence 45778889988865 3345555554322 236889999 999999999888764
No 50
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.12 E-value=0.0052 Score=48.07 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.+||||+..+ .+|+|+.| ||+ .|.++.|+.+++
T Consensus 305 ~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~ 346 (857)
T PRK10865 305 RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDT 346 (857)
T ss_pred cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHH
Confidence 45799999999987 48999999 997 689999998754
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.11 E-value=0.007 Score=46.40 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCCeEEEEecCCC-----CCCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRP-----DIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~-----~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.+|||||.. ..+|+|+.| ||. .|+|+.|+.++.
T Consensus 309 ~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~ 350 (731)
T TIGR02639 309 SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEET 350 (731)
T ss_pred CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHH
Confidence 3569999999974 368999999 996 799999998864
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.87 E-value=0.022 Score=38.68 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 34 GVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 34 ~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.++++||++..++++++. ||...+.++.|+.++.
T Consensus 129 ~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~ 164 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEEL 164 (305)
T ss_pred CeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHH
Confidence 47899999999999999999 9999999999987653
No 53
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.014 Score=42.12 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...|.||..|+.-.. +.++|++|+| ++.|.|++++ |+ ..++|+.|+.++.
T Consensus 132 ~aanaLLk~LEep~~-~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i 181 (394)
T PRK07940 132 RAANALLKAVEEPPP-RTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAV 181 (394)
T ss_pred HHHHHHHHHhhcCCC-CCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHH
Confidence 456789998886422 3455555555 9999999999 88 7999999987753
No 54
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.66 E-value=0.0091 Score=41.02 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCC--CCC---CcccccCCCccccEEEeCCCChhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSR--PDI---IDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~--~~~---lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.+.|++.|+.- ..+++||++++. ++. ++|++.+ ||+..|+|+.++.++
T Consensus 142 ~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~ed 199 (284)
T TIGR02880 142 YGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAE 199 (284)
T ss_pred hHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHH
Confidence 3456778899999853 346778887664 232 4899999 999999999988664
No 55
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.38 E-value=0.013 Score=40.55 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=32.2
Q ss_pred CeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 34 GVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 34 ~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+|++||++..++++|+. ||...++++.|+.++.
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~ 185 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEEL 185 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHH
Confidence 47889999999999999998 9999999999998754
No 56
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.32 E-value=0.024 Score=41.92 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhhC--------------------CCCCCCeEEEEecCCCC----CCcccccCCCccccEEEeCC
Q psy3374 15 KDRVVNQLLTELDG--------------------VEGLEGVYVVGATSRPD----IIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 15 ~~~~~~~ll~~ld~--------------------~~~~~~v~vi~aTn~~~----~lD~al~r~GRfd~~i~v~~ 65 (72)
..++.+++++.|+. +.-..++.+|||+|..+ .+|.|++| || ..|++..
T Consensus 286 i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 286 LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 34666777776662 22335799999999998 89999999 99 5566654
No 57
>KOG0735|consensus
Probab=95.28 E-value=0.032 Score=43.85 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=47.7
Q ss_pred CcchhHHHHHHHHHHhhC-C-CCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 11 STGVKDRVVNQLLTELDG-V-EGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 11 ~~~~~~~~~~~ll~~ld~-~-~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
..+.....++.||.++-. + +.+..+.|||+.+....|.|-|..|++|+.++.++.|+..+|
T Consensus 516 q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R 578 (952)
T KOG0735|consen 516 QDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRR 578 (952)
T ss_pred cchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHH
Confidence 334445566677755443 3 444458999999999999999999999999999999998876
No 58
>KOG0736|consensus
Probab=94.87 E-value=0.051 Score=42.94 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCC-CCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGV-EGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~-~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.++.++++ .|-+ ....+++|+++|+..+.|++.+.+ -|-.+|.++.|++++|
T Consensus 516 ~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qR 568 (953)
T KOG0736|consen 516 KVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQR 568 (953)
T ss_pred HHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHH
Confidence 34444554 3333 355679999999999999999999 8888999999999986
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.82 E-value=0.034 Score=43.49 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=31.0
Q ss_pred CCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.+||+|+..+ .+|+|+.| ||. .|+++.|+.++.
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~ 341 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDT 341 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHH
Confidence 45699999999874 58999999 995 689999997763
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.77 E-value=0.094 Score=30.32 Aligned_cols=45 Identities=38% Similarity=0.467 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCCC----CCCeEEEEecCCCC--CCcccccCCCccccEEEeC
Q psy3374 18 VVNQLLTELDGVEG----LEGVYVVGATSRPD--IIDPALLRPGRLGSSVHCT 64 (72)
Q Consensus 18 ~~~~ll~~ld~~~~----~~~v~vi~aTn~~~--~lD~al~r~GRfd~~i~v~ 64 (72)
....++..+..... ..++.+|++||... .+++.+.. ||+..|+++
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 100 AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 44566666666643 35788899999887 78888888 999888876
No 61
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.69 E-value=0.062 Score=36.35 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=28.4
Q ss_pred CeEEEEecCCC-----CCCcccccCCCccccEEEeCCCChhh
Q psy3374 34 GVYVVGATSRP-----DIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 34 ~v~vi~aTn~~-----~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
++.||+|+|.. ..+++|+++ || ..+++++|+.+.
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~ 189 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDT 189 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHH
Confidence 56799999976 367999999 99 789999999764
No 62
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.066 Score=37.73 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.....|.||..|+.- .+++++|.+|+.++.|.|.++. |+ ..+.|+.|+.++.
T Consensus 119 ~~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~ 170 (328)
T PRK05707 119 NRNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEES 170 (328)
T ss_pred CHHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHH
Confidence 446788899999864 3568888999999999999999 98 4588988887653
No 63
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.63 E-value=0.074 Score=33.84 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.. .+..++|.+||.+..|.+++.+ |+ ..+++..|+.++
T Consensus 111 ~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~ 159 (188)
T TIGR00678 111 AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEA 159 (188)
T ss_pred HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHH
Confidence 4567788888764 2345566667788999999998 77 489999888765
No 64
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.92 E-value=0.11 Score=35.46 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 20 NQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..|...|+... .++.+|.+||.++.+++++++ ||. .+.++.|+.+.
T Consensus 119 ~~L~~~le~~~--~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~ 164 (316)
T PHA02544 119 RHLRSFMEAYS--KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEE 164 (316)
T ss_pred HHHHHHHHhcC--CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHH
Confidence 34445566542 356778899999999999999 994 78898888765
No 65
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.58 E-value=0.17 Score=35.78 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....|.||..|+. ..+++++|..|+.++.|-|.++. |+ ..+.|+.|+.+..
T Consensus 122 ~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~ 172 (319)
T PRK06090 122 ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQA 172 (319)
T ss_pred HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHH
Confidence 4677889999985 45568888889999999999999 88 5888998887754
No 66
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.40 E-value=0.2 Score=35.53 Aligned_cols=52 Identities=29% Similarity=0.400 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhhCCC-----------CCCCeEEEEecCCCC-CCcccccCCCccccEEEeCCCCh
Q psy3374 15 KDRVVNQLLTELDGVE-----------GLEGVYVVGATSRPD-IIDPALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~-----------~~~~v~vi~aTn~~~-~lD~al~r~GRfd~~i~v~~Pd~ 68 (72)
...+.+.|+..|+.-. ...++++++|+|-.+ .++++++. ||...|.++.|..
T Consensus 141 ~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~ 204 (334)
T PRK13407 141 EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRD 204 (334)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCc
Confidence 4466777888776421 234689999999644 58999999 9999999998876
No 67
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.22 E-value=0.18 Score=35.61 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.....|.||..|+.- ..++++|-+|+.++.|-|.++. |+ ..+.|+.|+.++.
T Consensus 126 ~~~AaNaLLKtLEEP--p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~ 177 (319)
T PRK08769 126 NRAACNALLKTLEEP--SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEA 177 (319)
T ss_pred CHHHHHHHHHHhhCC--CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHH
Confidence 346778899988854 4467778888999999999999 88 6788888877653
No 68
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.59 E-value=0.072 Score=32.07 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhCCC-----------CCC------CeEEEEecCCCC----CCcccccCCCcc
Q psy3374 16 DRVVNQLLTELDGVE-----------GLE------GVYVVGATSRPD----IIDPALLRPGRL 57 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~-----------~~~------~v~vi~aTn~~~----~lD~al~r~GRf 57 (72)
..+++.|+..++.-. ... ++.+|+|+|... .+++|+++ ||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 466667777776531 111 389999999999 99999999 98
No 69
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.57 E-value=0.2 Score=35.43 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.....|.||..|+. ...++++|..|+.++.|-|.++. |.- .+.++.|+.+.
T Consensus 121 ~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~ 171 (334)
T PRK07993 121 TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQY 171 (334)
T ss_pred CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHH
Confidence 34678899999995 45578888889999999999999 885 67888887765
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=92.39 E-value=0.27 Score=38.50 Aligned_cols=48 Identities=23% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHHHHhhCC-------------CCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 19 VNQLLTELDGV-------------EGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 19 ~~~ll~~ld~~-------------~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.+.|+..||.- -.-.+|++|+|+|.. .|++||+. ||+ .|.+..++.++
T Consensus 437 ~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~ee 497 (784)
T PRK10787 437 ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDE 497 (784)
T ss_pred HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHH
Confidence 46777777741 012479999999998 59999999 996 56666555543
No 71
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.31 E-value=0.31 Score=34.51 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.....|.||..|+. ..+++++|.+|+.++.|-|.++. |. ..+.+..|+.+.
T Consensus 120 ~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~ 170 (325)
T PRK06871 120 TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQ 170 (325)
T ss_pred CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHH
Confidence 34677889999985 45568888899999999999999 88 677888887654
No 72
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.17 E-value=0.16 Score=35.01 Aligned_cols=49 Identities=27% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.|+..|+.. ..++++|.+||.++.+.+++.+ |+ ..++++.|+.++
T Consensus 132 ~~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~ 180 (355)
T TIGR02397 132 SAFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLED 180 (355)
T ss_pred HHHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHH
Confidence 4567788888753 3456777778889999999998 88 578888887654
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=0.35 Score=35.75 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+.||..|+.. .+.+++|++|+.+..++++++. |+ ..+++..|+.++
T Consensus 133 a~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~e 180 (472)
T PRK14962 133 AFNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDEL 180 (472)
T ss_pred HHHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHH
Confidence 445677777753 3457777777778999999999 88 578888887654
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.72 E-value=0.16 Score=36.18 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCCCC---CcccccCCCcccc--EEEeCCCChhhh
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRPDI---IDPALLRPGRLGS--SVHCTMPDLAFA 71 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~~~---lD~al~r~GRfd~--~i~v~~Pd~~~~ 71 (72)
+|+..++.+...+..+|+++++.|+. +++.+.. ||.. .++++.||.+.+
T Consensus 220 ~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 220 EFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETR 273 (405)
T ss_pred HHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHH
Confidence 45555555533445577777777765 4577887 9974 799999998865
No 75
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.56 E-value=0.3 Score=33.65 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCC--CCCCCeEEEEecCCCCCCcccccC---------------------CCccccEEEeCCCChhh
Q psy3374 18 VVNQLLTELDGV--EGLEGVYVVGATSRPDIIDPALLR---------------------PGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 18 ~~~~ll~~ld~~--~~~~~v~vi~aTn~~~~lD~al~r---------------------~GRfd~~i~v~~Pd~~~ 70 (72)
--.+|.+.|||- ...++|++.+|+|+-..+.+-... ..||..+|.|..||.+.
T Consensus 123 ~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~ 198 (249)
T PF05673_consen 123 EYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEE 198 (249)
T ss_pred HHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHH
Confidence 346788888886 456689999999998877764432 35899999999998764
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.45 E-value=0.32 Score=36.35 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCCh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~ 68 (72)
....+.||..|+. ...++++|.+|+.++.|.++++. |+ ..++|..++.
T Consensus 135 ~~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~ 182 (484)
T PRK14956 135 DQSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPL 182 (484)
T ss_pred HHHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCH
Confidence 4567888888874 34578888889999999999999 98 4566665554
No 77
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.29 E-value=0.13 Score=39.85 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.- .+++++|.+||.++.|.+.++. |+ ..+.|..++.++
T Consensus 138 ~~AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~ee 187 (700)
T PRK12323 138 NHAFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGH 187 (700)
T ss_pred HHHHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHH
Confidence 45678888888753 4568888889999999999999 88 778887776653
No 78
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.81 E-value=0.6 Score=33.23 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.. ..+.++|..|+.|+.+.|.++. |+ ..+.++.|+.++
T Consensus 155 ~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~ 204 (351)
T PRK09112 155 RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDE 204 (351)
T ss_pred HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHH
Confidence 34567788888764 2345555667889999999988 98 799999988765
No 79
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=90.68 E-value=0.27 Score=36.71 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=24.6
Q ss_pred eEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 35 VYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 35 v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
.++.+|||.|+.|+|++++ |+. .|+++.++.+
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~e 266 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDE 266 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHH
Confidence 5666778889999999999 984 5666665544
No 80
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=90.42 E-value=0.67 Score=32.90 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCC-----------CCCCCeEEEEecCCCC-CCcccccCCCccccEEEeCCCCh
Q psy3374 16 DRVVNQLLTELDGV-----------EGLEGVYVVGATSRPD-IIDPALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 16 ~~~~~~ll~~ld~~-----------~~~~~v~vi~aTn~~~-~lD~al~r~GRfd~~i~v~~Pd~ 68 (72)
..+.+.|+..|+.- ....++++++++|-.+ .+.++++. ||..++.++.|+.
T Consensus 145 ~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~ 207 (337)
T TIGR02030 145 DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRD 207 (337)
T ss_pred HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCC
Confidence 35566677777531 1123689999998655 69999999 9999999999975
No 81
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.36 E-value=0.53 Score=37.32 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
...|.||..|+.- .+++.+|.+||.++.|.+.++. |+ .++.|..++.+
T Consensus 134 ~A~NALLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~e 181 (830)
T PRK07003 134 HAFNAMLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAG 181 (830)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHH
Confidence 4567788888754 3468888888999999999999 88 67777766554
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.15 E-value=0.87 Score=32.60 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..+... ..+.++|.+|+.++.+.+.++. |+ ..|.++.|+.++
T Consensus 155 ~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~ 204 (365)
T PRK07471 155 ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPED 204 (365)
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHH
Confidence 46677888888854 3356777789999999999888 87 678888887665
No 83
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.07 E-value=0.21 Score=36.24 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHhhCCCCCCCeEEEEecCCCCC---CcccccCCCccc--cEEEeCCCChhhh
Q psy3374 20 NQLLTELDGVEGLEGVYVVGATSRPDI---IDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v~vi~aTn~~~~---lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
.+|+..++.+...+..+|++++..|.. +++.+.. ||. ..++++.||.+.+
T Consensus 231 ~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 231 EEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETR 285 (450)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHH
Confidence 345555555533444577777777766 6788888 997 4899999998864
No 84
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.06 E-value=0.58 Score=32.37 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCeEEEEecCCCC---CCcccccCCCccc-cEEEeCCCChhh
Q psy3374 33 EGVYVVGATSRPD---IIDPALLRPGRLG-SSVHCTMPDLAF 70 (72)
Q Consensus 33 ~~v~vi~aTn~~~---~lD~al~r~GRfd-~~i~v~~Pd~~~ 70 (72)
.++.+|++||.++ .+++.+.+ ||. ..|+++.++.++
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e 203 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEE 203 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHH
Confidence 4688999999986 58888887 885 679999888765
No 85
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.02 E-value=0.58 Score=32.76 Aligned_cols=50 Identities=22% Similarity=0.147 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.- .+++++|.+|+.++.|-|+++. |. ..+++..|+.+.
T Consensus 124 ~~a~NaLLK~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~ 173 (329)
T PRK08058 124 ASAANSLLKFLEEP--SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPES 173 (329)
T ss_pred HHHHHHHHHHhcCC--CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHH
Confidence 45677889888864 3456677788889999999999 87 678888877654
No 86
>PRK06893 DNA replication initiation factor; Validated
Probab=89.93 E-value=0.24 Score=32.81 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=33.8
Q ss_pred HHHHhhCCCCCC-CeEEEEecCCCCCCc---ccccCCCccccEEEeCCCChhhh
Q psy3374 22 LLTELDGVEGLE-GVYVVGATSRPDIID---PALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 22 ll~~ld~~~~~~-~v~vi~aTn~~~~lD---~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
|...++.....+ .++|++++..|..++ +.|....++...+.++.||.+.+
T Consensus 113 l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 113 IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 444455443333 456777777788776 78888444567899999998864
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.85 E-value=0.59 Score=35.19 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.. ...+++|.+|+.++.|.+.++. |+ ..++|..|+.++
T Consensus 133 ~~a~naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~e 182 (559)
T PRK05563 133 TGAFNALLKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVED 182 (559)
T ss_pred HHHHHHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHH
Confidence 45677888888754 3456666667789999999988 87 467787776643
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.64 E-value=0.66 Score=32.82 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.. .+++.+|.+|+.++.+.+++.. |+ ..++++.|+.++
T Consensus 134 ~a~naLLk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~e 182 (363)
T PRK14961 134 HSFNALLKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEK 182 (363)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHH
Confidence 4566788887754 3456666677888999999988 88 678898887765
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.50 E-value=0.71 Score=35.64 Aligned_cols=50 Identities=26% Similarity=0.273 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.- .+++.+|.+|+.+..|.+.++. |+ ..++|..++.++
T Consensus 133 ~~a~NALLKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~e 182 (647)
T PRK07994 133 RHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQ 182 (647)
T ss_pred HHHHHHHHHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHH
Confidence 35677888888853 4467777778889999999999 87 788888877654
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.87 E-value=0.74 Score=36.01 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.. .+.+++|.+|+.++.|.+.++. |+ ..++|..|+.++
T Consensus 133 ~A~NALLKtLEEP--P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~ee 181 (725)
T PRK07133 133 SAFNALLKTLEEP--PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDE 181 (725)
T ss_pred HHHHHHHHHhhcC--CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHH
Confidence 4577788888854 3467777788889999999999 88 478888877654
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.95 E-value=1.5 Score=32.77 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.|+..|+.- ..++++|.+||.++.+.+++.. |+. .++|..|+.++
T Consensus 130 ~~a~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~e 179 (504)
T PRK14963 130 KSAFNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEE 179 (504)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHH
Confidence 35577788887753 3456777788999999999998 874 78888887664
No 92
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=87.94 E-value=0.78 Score=32.87 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCC-----------CCCCCeEEEEecCCCC-CCcccccCCCccccEEEeCCCCh
Q psy3374 16 DRVVNQLLTELDGV-----------EGLEGVYVVGATSRPD-IIDPALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 16 ~~~~~~ll~~ld~~-----------~~~~~v~vi~aTn~~~-~lD~al~r~GRfd~~i~v~~Pd~ 68 (72)
..+.+.||..|+.- ....++++++|.|-.+ .+.++++. ||..++.++.|+.
T Consensus 158 ~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 158 DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 35566677777541 1233688999888655 69999999 9999999999874
No 93
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=87.71 E-value=1.2 Score=28.06 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeC
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCT 64 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~ 64 (72)
......|.||..|+.- .+++.+|.+|+.++.|-|.++. |+ ..|.++
T Consensus 114 l~~~a~NaLLK~LEep--p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 114 LTEEAQNALLKTLEEP--PENTYFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp S-HHHHHHHHHHHHST--TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred hhHHHHHHHHHHhcCC--CCCEEEEEEECChHHChHHHHh--hc-eEEecC
Confidence 4557889999999965 4578888899999999999999 77 444443
No 94
>PHA02244 ATPase-like protein
Probab=87.54 E-value=1.2 Score=32.47 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCeEEEEecCCC-----------CCCcccccCCCccccEEEeCCCChh
Q psy3374 33 EGVYVVGATSRP-----------DIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 33 ~~v~vi~aTn~~-----------~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
.++-+|+|+|.+ ..+++|++. || ..|+++.|...
T Consensus 220 ~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~~ 264 (383)
T PHA02244 220 EDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEKI 264 (383)
T ss_pred CCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcHH
Confidence 568999999973 788999999 99 57999999743
No 95
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.16 E-value=1.1 Score=33.57 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.- ...+++|.+|+.++.++++++. |+ ..+++..++.++
T Consensus 143 ~a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~e 191 (507)
T PRK06645 143 GAFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEE 191 (507)
T ss_pred HHHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHH
Confidence 4567778777743 4467777778889999999998 88 678888777654
No 96
>PRK09862 putative ATP-dependent protease; Provisional
Probab=86.90 E-value=1.6 Score=32.73 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhCCC-----------CCCCeEEEEecCCCC---------------------CCcccccCCCccccEEE
Q psy3374 15 KDRVVNQLLTELDGVE-----------GLEGVYVVGATSRPD---------------------IIDPALLRPGRLGSSVH 62 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~-----------~~~~v~vi~aTn~~~---------------------~lD~al~r~GRfd~~i~ 62 (72)
...+...|++.|+.=. ...++.+|+|+|... .|..+++. |||.++.
T Consensus 307 ~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~ 384 (506)
T PRK09862 307 ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLE 384 (506)
T ss_pred CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEE
Confidence 3456677777774321 123689999999753 47778888 9999999
Q ss_pred eCCCChh
Q psy3374 63 CTMPDLA 69 (72)
Q Consensus 63 v~~Pd~~ 69 (72)
++.|+.+
T Consensus 385 v~~~~~~ 391 (506)
T PRK09862 385 IPLPPPG 391 (506)
T ss_pred eCCCCHH
Confidence 9998754
No 97
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=86.62 E-value=0.7 Score=32.55 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+... +++.+|.+|..++.+.+.+.+ |+ ..+.|+.|+.+.
T Consensus 127 ~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~ 176 (325)
T PRK08699 127 LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEE 176 (325)
T ss_pred HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHH
Confidence 356677888888763 345666688889999999988 87 778888887765
No 98
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=85.71 E-value=1.5 Score=32.25 Aligned_cols=49 Identities=22% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.|+..|+.. .+.+++|.+||.++.|.++++. |+ ..+++..++.++
T Consensus 136 ~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~e 184 (451)
T PRK06305 136 EAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEET 184 (451)
T ss_pred HHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHH
Confidence 3556778888754 3466777778889999999998 88 468888877654
No 99
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=85.69 E-value=1.8 Score=29.85 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.- ..++++|.+|+.++.|-+.++. |+ ..+++..|+.++
T Consensus 107 ~~a~naLLK~LEep--p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~ 156 (313)
T PRK05564 107 EQAQNAFLKTIEEP--PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEE 156 (313)
T ss_pred HHHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHH
Confidence 35677888888854 3455555566779999999998 87 588888887664
No 100
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.67 E-value=0.81 Score=35.81 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.+||+|+..+ ..|+++.+ ||. .|.++.|+.++.
T Consensus 305 rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~ 346 (821)
T CHL00095 305 RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEET 346 (821)
T ss_pred CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHH
Confidence 34688999999764 58999999 996 589999987653
No 101
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.28 E-value=2 Score=30.90 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCCCCCeEEEEec--CCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 20 NQLLTELDGVEGLEGVYVVGAT--SRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v~vi~aT--n~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
+.|+..|+ .+.+++|++| |....+++++++ || ..+.++.|+.++
T Consensus 110 ~~LL~~le----~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~ 155 (413)
T PRK13342 110 DALLPHVE----DGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEED 155 (413)
T ss_pred HHHHHHhh----cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHH
Confidence 44555554 2456777665 335689999999 98 778888888765
No 102
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=85.04 E-value=1.2 Score=31.71 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=29.2
Q ss_pred CeEEEEecCCCC------------CCcccccCCCccccEEEeCCCChhh
Q psy3374 34 GVYVVGATSRPD------------IIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 34 ~v~vi~aTn~~~------------~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.+.||||.|-.+ .+++|++. ||-..+.+++|+.+.
T Consensus 178 ~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~ 224 (327)
T TIGR01650 178 AFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDN 224 (327)
T ss_pred CeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHH
Confidence 588999999765 45788998 998889999998764
No 103
>KOG2004|consensus
Probab=84.88 E-value=1 Score=35.79 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCCcccccCCCccc
Q psy3374 34 GVYVVGATSRPDIIDPALLRPGRLG 58 (72)
Q Consensus 34 ~v~vi~aTn~~~~lD~al~r~GRfd 58 (72)
+|++|||.|..+.|+++|+. |+.
T Consensus 554 kVLFicTAN~idtIP~pLlD--RME 576 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RME 576 (906)
T ss_pred heEEEEeccccccCChhhhh--hhh
Confidence 59999999999999999999 885
No 104
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=84.81 E-value=2.6 Score=29.35 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
.....|.||..|+. ...+++++..|..++.|.|.++. |+ ..+.+..|+..
T Consensus 102 t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~ 151 (263)
T PRK06581 102 NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILH 151 (263)
T ss_pred CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHH
Confidence 34677889998885 34567777778889999999999 88 67778877763
No 105
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=84.61 E-value=1.8 Score=30.24 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCC
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMP 66 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~P 66 (72)
.....|.||..|+.- ..++++|..|+.++.|-|.++. |+ ..|.|+.+
T Consensus 117 ~~~AaNaLLKtLEEP--p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~~ 163 (290)
T PRK07276 117 HVNAANSLLKVIEEP--QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPKN 163 (290)
T ss_pred CHHHHHHHHHHhcCC--CCCeEEEEEECChhhCchHHHH--cc-eeeeCCCc
Confidence 346788899999863 4467888888889999999999 88 67777653
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.27 E-value=0.91 Score=34.29 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
....|.||..|+.- ..++++|.+||.++.|.+.++. |+ ..++|..++.+
T Consensus 133 ~~a~naLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~ 181 (576)
T PRK14965 133 TNAFNALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQ 181 (576)
T ss_pred HHHHHHHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHH
Confidence 35567888888854 3467777888889999999988 77 46777666554
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.26 E-value=1.3 Score=34.14 Aligned_cols=49 Identities=24% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.- .+++++|.+||.++.+.+.++. |+ ..|+|+.++.++
T Consensus 134 ~a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~e 182 (624)
T PRK14959 134 EAFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAG 182 (624)
T ss_pred HHHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHH
Confidence 4567788888753 3467788888889999999888 87 467887776554
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.14 E-value=2.7 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+.|+..|+.. ....++|.+|+.+..+.+++.+ |+ ..++++.|+.++
T Consensus 124 ~~~~ll~~le~~--~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~ 171 (367)
T PRK14970 124 AFNAFLKTLEEP--PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKD 171 (367)
T ss_pred HHHHHHHHHhCC--CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHH
Confidence 456677767653 2345566667778899999988 76 458888887654
No 109
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=83.92 E-value=2.3 Score=29.88 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHHhhCC--CCCCCeEEEEecCCCCCCcccccC--------------------CCccccEEEeCCCChhh
Q psy3374 19 VNQLLTELDGV--EGLEGVYVVGATSRPDIIDPALLR--------------------PGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 19 ~~~ll~~ld~~--~~~~~v~vi~aTn~~~~lD~al~r--------------------~GRfd~~i~v~~Pd~~~ 70 (72)
--.|-+.|||- ....+|++-||+||-..|++-... ..||..++.|..||.+.
T Consensus 157 yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~ 230 (287)
T COG2607 157 YKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDE 230 (287)
T ss_pred HHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHH
Confidence 34566777775 345689999999999888744321 45888899988888753
No 110
>smart00350 MCM minichromosome maintenance proteins.
Probab=83.17 E-value=1.6 Score=32.43 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCC-------------CCcccccCCCccccEEEe-CCCChhh
Q psy3374 33 EGVYVVGATSRPD-------------IIDPALLRPGRLGSSVHC-TMPDLAF 70 (72)
Q Consensus 33 ~~v~vi~aTn~~~-------------~lD~al~r~GRfd~~i~v-~~Pd~~~ 70 (72)
.+..||||+|-.+ .|+++++. |||..+.+ +.||.+.
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~ 391 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEER 391 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHH
Confidence 4688999999643 69999999 99986554 6787764
No 111
>PRK04132 replication factor C small subunit; Provisional
Probab=82.92 E-value=2.7 Score=33.51 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
....+.|+..|+.. .+++.+|.+||.++.+-++++. |+ ..+.|+.|+.+
T Consensus 644 ~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~ 692 (846)
T PRK04132 644 QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDE 692 (846)
T ss_pred HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHH
Confidence 34567788888754 3467888999999999999998 88 77888888754
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.28 E-value=1.4 Score=32.92 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.. .+.+.+|.+|+.++.+.+.++. |+ ..++|..|+.++
T Consensus 133 ~~a~naLLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~ 182 (527)
T PRK14969 133 KSAFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPL 182 (527)
T ss_pred HHHHHHHHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHH
Confidence 45678888888864 3457777777888899888887 77 777887776653
No 113
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.02 E-value=0.91 Score=29.19 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=27.7
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCCCCCc---ccccCCCcc--ccEEEeCCCChhh
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRPDIID---PALLRPGRL--GSSVHCTMPDLAF 70 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~~~lD---~al~r~GRf--d~~i~v~~Pd~~~ 70 (72)
.+...++.....+..+|++++..+..++ +.+.+ || ...|.++.|+.++
T Consensus 111 ~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 111 ALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEE 163 (226)
T ss_pred HHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHH
Confidence 3444444332223355565555555543 66777 66 4788899888754
No 114
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=81.63 E-value=3.1 Score=31.63 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhhCCC-----------CCCCeEEEEecCCCC---CCcccccCCCccccEEEeCCC
Q psy3374 15 KDRVVNQLLTELDGVE-----------GLEGVYVVGATSRPD---IIDPALLRPGRLGSSVHCTMP 66 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~-----------~~~~v~vi~aTn~~~---~lD~al~r~GRfd~~i~v~~P 66 (72)
...+.+.|+..|+.-. ...++.||+|+|..+ .+.++|+. ||+.+|.+..|
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 3466777888886321 123588999999875 79999999 99999888764
No 115
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=81.38 E-value=1.8 Score=33.29 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.. .+.+++|.+|+.+..|.+++++ |+. .+++..|+.++
T Consensus 134 ~A~NaLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~e 182 (605)
T PRK05896 134 SAWNALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSE 182 (605)
T ss_pred HHHHHHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHH
Confidence 4567788888854 3457777788889999999999 884 68888877654
No 116
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=81.32 E-value=2.6 Score=30.47 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhCC--CCC-------CCeEEEEecCCC-------CCCcccccCCCccccEEEeCCCCh
Q psy3374 15 KDRVVNQLLTELDGV--EGL-------EGVYVVGATSRP-------DIIDPALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~--~~~-------~~v~vi~aTn~~-------~~lD~al~r~GRfd~~i~v~~Pd~ 68 (72)
....++.||..++.- +.. -..++|++||-. ....+||++ |+. .|+|+.|..
T Consensus 249 ~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~ 315 (361)
T smart00763 249 DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLR 315 (361)
T ss_pred CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCC
Confidence 457888888888753 111 136899999988 377899999 997 888888753
No 117
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.28 E-value=3.5 Score=28.82 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCC---CCcccccCCCccc-cEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPD---IIDPALLRPGRLG-SSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~---~lD~al~r~GRfd-~~i~v~~Pd~~~ 70 (72)
..+..|+..++.... .++.+|+++|.++ .+++.+.. ||. ..|+++.++.++
T Consensus 157 ~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e 211 (394)
T PRK00411 157 DVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADE 211 (394)
T ss_pred hHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHH
Confidence 356666666665533 2688888888764 46777766 664 578888888765
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=81.05 E-value=3.2 Score=31.40 Aligned_cols=51 Identities=20% Similarity=0.149 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.....+.||..|+.. ...+.+|.+|+.+..|.++++. |. ..++|..++.++
T Consensus 130 t~~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~e 180 (535)
T PRK08451 130 TKEAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNS 180 (535)
T ss_pred CHHHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHH
Confidence 346678888888865 3345666667778999999999 86 688888877654
No 119
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=80.99 E-value=1.2 Score=32.65 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCC---CCcccccCCCccc--cEEEeCCCChhhh
Q psy3374 33 EGVYVVGATSRPD---IIDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 33 ~~v~vi~aTn~~~---~lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
+..+|+++++.|. .+++.|+. ||. ..+.+..|+.+.+
T Consensus 235 ~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 235 GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHH
Confidence 3456666655554 56789999 996 6888888998754
No 120
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=80.94 E-value=2.3 Score=32.25 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.. ...+++|.+|+.++.|.++++. |+. .+++..++.++
T Consensus 133 ~~a~naLLK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~e 182 (563)
T PRK06647 133 NSAFNALLKTIEEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEK 182 (563)
T ss_pred HHHHHHHHHhhccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHH
Confidence 34567788887743 3467777777889999999998 874 57887776554
No 121
>PRK13531 regulatory ATPase RavA; Provisional
Probab=80.72 E-value=2.9 Score=31.49 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhhCCC--------CCCCeEEEEecCCCCC---CcccccCCCccccEEEeCCCCh
Q psy3374 15 KDRVVNQLLTELDGVE--------GLEGVYVVGATSRPDI---IDPALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~--------~~~~v~vi~aTn~~~~---lD~al~r~GRfd~~i~v~~Pd~ 68 (72)
.....+.||..|..-. .-...++++|||.... ..+|+.- ||-.+|.+++|+.
T Consensus 120 sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 120 GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 4567788888884321 1112456666674321 2248888 9988999999974
No 122
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=80.63 E-value=3.2 Score=29.06 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.-. +.++|..|+.++.|-|.++. |+ ..++|+.|+.+.
T Consensus 138 ~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~ 186 (314)
T PRK07399 138 EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQ 186 (314)
T ss_pred HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHH
Confidence 356778888888653 33456667789999999999 87 778888877654
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.62 E-value=2.4 Score=31.53 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.. ...+++|.+|+.++.+.+++.+ |+. .+.+..|+.++
T Consensus 134 ~a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~e 182 (486)
T PRK14953 134 EAFNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQ 182 (486)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHH
Confidence 4567778887754 2345555566778889999988 774 68888877654
No 124
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.38 E-value=2.8 Score=31.99 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
....|.||..|+.. .+++++|.+|+.++.|.++++. |. ..++|..++.+
T Consensus 132 ~~A~NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~ 180 (584)
T PRK14952 132 TAGFNALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPR 180 (584)
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHH
Confidence 35677888888854 3467778888889999999988 75 67888777654
No 125
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=80.18 E-value=3 Score=33.09 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
....|.||..|+... .++++|.+|+.++.|-+.|+. |+ ..++|..++.+
T Consensus 134 ~~a~NaLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~ 182 (824)
T PRK07764 134 PQGFNALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPE 182 (824)
T ss_pred HHHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHH
Confidence 356678888888653 356777777888889999988 77 66777776554
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.09 E-value=3.2 Score=31.85 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
....+.||..|+.- ...+++|.+|+.++.|-+.++. |+ ..++|..++.+
T Consensus 135 ~~a~naLLK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ 183 (620)
T PRK14948 135 TAAFNALLKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLE 183 (620)
T ss_pred HHHHHHHHHHHhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHH
Confidence 35677888888853 3457777778889999999988 77 55777666554
No 127
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.08 E-value=2.5 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=23.6
Q ss_pred CCeEEEEecCC-CCCCcccccCCCccccEEEeCCCC
Q psy3374 33 EGVYVVGATSR-PDIIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 33 ~~v~vi~aTn~-~~~lD~al~r~GRfd~~i~v~~Pd 67 (72)
.+..+|+++|. ....+..+.+ |++.++.++.|+
T Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 148 (148)
T smart00382 115 KNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLIL 148 (148)
T ss_pred CCCEEEEEeCCCccCchhhhhh--ccceEEEecCCC
Confidence 45788888887 4445555555 999999987663
No 128
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=80.03 E-value=5.6 Score=27.01 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 19 VNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 19 ~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.+.|+..|+.... ...+|.+|+.+..+.+.+.. |+ ..+++..|+.++
T Consensus 142 ~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~ 188 (337)
T PRK12402 142 QQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDE 188 (337)
T ss_pred HHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHH
Confidence 4455666665433 23344456667778888887 76 568888887764
No 129
>PRK09087 hypothetical protein; Validated
Probab=79.15 E-value=1.4 Score=29.25 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=33.3
Q ss_pred HHHHhhCCCCCCCeEEEEecCCCCCC---cccccCCCccc--cEEEeCCCChhhh
Q psy3374 22 LLTELDGVEGLEGVYVVGATSRPDII---DPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 22 ll~~ld~~~~~~~v~vi~aTn~~~~l---D~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
|...++.+.+.++.+|++++..|..+ .+.|+. ||. ..+++..||.+.+
T Consensus 106 lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 106 LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALL 158 (226)
T ss_pred HHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHH
Confidence 55555555444567778777666543 677888 887 6888899998754
No 130
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=78.86 E-value=4.7 Score=28.18 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.....|.||..|+.. .+++++|-.|+.++.|-+.++. |. ..+++..|+.+.
T Consensus 103 ~~~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~ 153 (299)
T PRK07132 103 SNSLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQK 153 (299)
T ss_pred CHHHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHH
Confidence 345778899999974 3456666666688999999988 76 568887776553
No 131
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.55 E-value=4.3 Score=32.89 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.- .+++.+|.+|+.+..|.+.++. |+ ..+.|..++.++
T Consensus 133 ~eAqNALLKtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eE 182 (944)
T PRK14949 133 RSSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDE 182 (944)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHH
Confidence 45677788888753 3456777778889999999988 87 667777766543
No 132
>PRK08084 DNA replication initiation factor; Provisional
Probab=78.41 E-value=1.2 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=26.7
Q ss_pred eEEEEecCCCCC---CcccccCCCccc--cEEEeCCCChhhh
Q psy3374 35 VYVVGATSRPDI---IDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 35 v~vi~aTn~~~~---lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
-+++++++.|.. +.|.|+. ||. ..+.+..|+.++.
T Consensus 133 ~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred eEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHH
Confidence 466666677666 5789999 987 7889999987653
No 133
>PRK05642 DNA replication initiation factor; Validated
Probab=78.32 E-value=1.8 Score=28.73 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=34.0
Q ss_pred HHHHHHhhCCCCCCCeEEEEecCCCCCC---cccccCCCccc--cEEEeCCCChhhh
Q psy3374 20 NQLLTELDGVEGLEGVYVVGATSRPDII---DPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v~vi~aTn~~~~l---D~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
.+|...++.+...++.++++++..|..+ .|.|+. ||. ..+.+..|+.+.+
T Consensus 117 ~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 117 EALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDK 171 (234)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHH
Confidence 3456666665555567888888777554 578888 885 5666777887653
No 134
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=78.24 E-value=2.3 Score=27.62 Aligned_cols=49 Identities=18% Similarity=0.084 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCCCCCe-EEEEecCCCC--CCcccccCCCcc--ccEEEeCCCChhh
Q psy3374 20 NQLLTELDGVEGLEGV-YVVGATSRPD--IIDPALLRPGRL--GSSVHCTMPDLAF 70 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v-~vi~aTn~~~--~lD~al~r~GRf--d~~i~v~~Pd~~~ 70 (72)
..|...++........ ++++++..|. .+.+.+.. || ...++++.|+.+.
T Consensus 108 ~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 108 IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDAD 161 (227)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHH
Confidence 3455555554334443 4444443332 34566666 77 4689999998753
No 135
>PRK08727 hypothetical protein; Validated
Probab=77.92 E-value=1.3 Score=29.34 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=29.6
Q ss_pred HHhhCCCCCCCeEEEEecCCCCCC---cccccCCCcc--ccEEEeCCCChhhh
Q psy3374 24 TELDGVEGLEGVYVVGATSRPDII---DPALLRPGRL--GSSVHCTMPDLAFA 71 (72)
Q Consensus 24 ~~ld~~~~~~~v~vi~aTn~~~~l---D~al~r~GRf--d~~i~v~~Pd~~~~ 71 (72)
..++.....+.-+++.+.+.|..+ +++|.+ || -..+.++.|+.+..
T Consensus 117 ~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 117 DFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred HHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHH
Confidence 334433223333566666678766 789998 87 45788888888764
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=77.27 E-value=4.9 Score=31.63 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhhCC---CC------CCCeEEEEecCCC-------------------------CCCcccccCCCccccE
Q psy3374 15 KDRVVNQLLTELDGV---EG------LEGVYVVGATSRP-------------------------DIIDPALLRPGRLGSS 60 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~---~~------~~~v~vi~aTn~~-------------------------~~lD~al~r~GRfd~~ 60 (72)
...+.+.||+.||.- .. -.++++|+|||.- ..+.|+++. |+|..
T Consensus 570 ~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~i 647 (758)
T PRK11034 570 HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNI 647 (758)
T ss_pred hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEE
Confidence 346778899999842 11 1368899999932 225577777 99999
Q ss_pred EEeCCCChhh
Q psy3374 61 VHCTMPDLAF 70 (72)
Q Consensus 61 i~v~~Pd~~~ 70 (72)
|.|...+.+.
T Consensus 648 i~f~~L~~~~ 657 (758)
T PRK11034 648 IWFDHLSTDV 657 (758)
T ss_pred EEcCCCCHHH
Confidence 9998887764
No 137
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.09 E-value=4.3 Score=30.77 Aligned_cols=50 Identities=26% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.. .+.+.+|.+|+.+..+.+.++. |+ ..+++..++.++
T Consensus 133 ~~a~naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~e 182 (546)
T PRK14957 133 KQSFNALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQAD 182 (546)
T ss_pred HHHHHHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHH
Confidence 34667788888853 3456666666678889888888 88 778888877654
No 138
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=76.81 E-value=2.1 Score=33.77 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCCCcccccCCCccc
Q psy3374 34 GVYVVGATSRPDIIDPALLRPGRLG 58 (72)
Q Consensus 34 ~v~vi~aTn~~~~lD~al~r~GRfd 58 (72)
+|++|+|.|..+.|+..|+. |++
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RME 488 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RME 488 (782)
T ss_pred heEEEeecCccccCChHHhc--cee
Confidence 59999999999999999999 885
No 139
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=76.78 E-value=4.9 Score=27.87 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCC
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMP 66 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~P 66 (72)
.....|.||..|+. ...++++|..|+.++.|-|.++. |. ..+.++.+
T Consensus 101 ~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 101 NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 34678899999985 45578888889999999999999 87 33555544
No 140
>PRK06620 hypothetical protein; Validated
Probab=76.49 E-value=2.1 Score=28.25 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=32.5
Q ss_pred HHHHhhCCCCCCCeEEEEecCCCCC--CcccccCCCcccc--EEEeCCCChhh
Q psy3374 22 LLTELDGVEGLEGVYVVGATSRPDI--IDPALLRPGRLGS--SVHCTMPDLAF 70 (72)
Q Consensus 22 ll~~ld~~~~~~~v~vi~aTn~~~~--lD~al~r~GRfd~--~i~v~~Pd~~~ 70 (72)
|...++.+.+.++.++++++..|.. + ++|+. ||.. .+.+..||.+.
T Consensus 102 lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 102 LLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDEL 151 (214)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHH
Confidence 4444444445566888888877776 5 77887 8863 68889999765
No 141
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=76.36 E-value=6.5 Score=30.04 Aligned_cols=57 Identities=16% Similarity=0.030 Sum_probs=41.4
Q ss_pred cchhHHHHHHHHHHhhCC-----------CCCCCeEEEEecCC---CCCCcccccCCCccccEEEeCCCChhh
Q psy3374 12 TGVKDRVVNQLLTELDGV-----------EGLEGVYVVGATSR---PDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~-----------~~~~~v~vi~aTn~---~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
+.....+++.|++-|+.= .-..+++|||+-|. -..|.++++. ||+.+|.++.|+..+
T Consensus 103 n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred ccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 445668899999999752 11235788886432 2458999999 999999999987653
No 142
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.22 E-value=3.1 Score=31.13 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.- .+.+.+|.+|+.++.|.+.++. |+ ..+++..++.++
T Consensus 130 ~~A~NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~e 179 (491)
T PRK14964 130 NSAFNALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDK 179 (491)
T ss_pred HHHHHHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHH
Confidence 35677888888864 3457777777888999999998 87 567887766543
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=76.13 E-value=5.5 Score=30.88 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhhCCC---------CCCCeEEEEecCCCC-------------------------CCcccccCCCccccE
Q psy3374 15 KDRVVNQLLTELDGVE---------GLEGVYVVGATSRPD-------------------------IIDPALLRPGRLGSS 60 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~---------~~~~v~vi~aTn~~~-------------------------~lD~al~r~GRfd~~ 60 (72)
...+.+.||+.||.-. ...++++|+|||... .+.|.++. |||..
T Consensus 566 ~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~V 643 (731)
T TIGR02639 566 HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAI 643 (731)
T ss_pred CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeE
Confidence 3467788899888641 123588999998742 24566665 99999
Q ss_pred EEeCCCChhh
Q psy3374 61 VHCTMPDLAF 70 (72)
Q Consensus 61 i~v~~Pd~~~ 70 (72)
|.|..-+.+.
T Consensus 644 i~F~pLs~e~ 653 (731)
T TIGR02639 644 IHFNPLSEEV 653 (731)
T ss_pred EEcCCCCHHH
Confidence 9998877664
No 144
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=76.08 E-value=2.6 Score=33.03 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.. .+.+.+|.+||.+..+.+.++. |+ ..+.|..++.++
T Consensus 133 ~~A~NALLKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~ee 182 (709)
T PRK08691 133 KSAFNAMLKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQ 182 (709)
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHH
Confidence 34567788888854 3457777788889999999886 88 556666665543
No 145
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.68 E-value=4.4 Score=31.18 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....|.||..|+.- .+.+.+|.+|+.+..+.+.++. |+ ..+++..++.++
T Consensus 138 ~~a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~ee 187 (618)
T PRK14951 138 NTAFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPET 187 (618)
T ss_pred HHHHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHH
Confidence 34567777777753 3456677777889999999888 87 777887766543
No 146
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=75.36 E-value=5.4 Score=30.54 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.. .+.+.+|.+|+.++.+.+.++. |+ ..++|..|+.++
T Consensus 147 ~a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~e 195 (598)
T PRK09111 147 AAFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADV 195 (598)
T ss_pred HHHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHH
Confidence 4567788888754 3346666677788888888888 87 578888887654
No 147
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=74.59 E-value=3.3 Score=31.59 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=22.9
Q ss_pred eEEE-EecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 35 VYVV-GATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 35 v~vi-~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
++++ +||+.++.++++|+. ||. .++++..+.+
T Consensus 324 ~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~e 356 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPE 356 (615)
T ss_pred EEEEEeccccccccCHHHHh--cee-EEEeCCCCHH
Confidence 4444 456779999999998 996 4566665554
No 148
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=74.44 E-value=7.2 Score=29.81 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhhCC-----------CCCCCeEEEEecCCC-CCCcccccCCCccccEEEeCCCC
Q psy3374 15 KDRVVNQLLTELDGV-----------EGLEGVYVVGATSRP-DIIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~-----------~~~~~v~vi~aTn~~-~~lD~al~r~GRfd~~i~v~~Pd 67 (72)
...+.+.||..|+.- ....++.+|+|+|-. ..+.++|+. ||+.+|.++.|.
T Consensus 139 ~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~ 201 (633)
T TIGR02442 139 DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPR 201 (633)
T ss_pred CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCC
Confidence 345667788877631 112358999999953 368889999 999999988765
No 149
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.90 E-value=3.1 Score=31.11 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
....|.||..|+.. .+++.+|.+|+.+..+.+.++. |+ ..+++..++.+
T Consensus 133 ~~a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~ 181 (509)
T PRK14958 133 GHSFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPL 181 (509)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHH
Confidence 35678888888864 3456677777888999988888 77 55667655443
No 150
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.68 E-value=4.6 Score=31.71 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+.. .+++.+|.+|+.+..+.+.++. |+ ..+.|..++.++
T Consensus 133 ~A~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eE 181 (702)
T PRK14960 133 HSFNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDE 181 (702)
T ss_pred HHHHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHH
Confidence 4667788888754 3456777777889999999887 88 677787776543
No 151
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=73.59 E-value=6.2 Score=29.86 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCcc
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRL 57 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRf 57 (72)
......|.||..|+. ...+|++|.||.-|+.|++.++. |+
T Consensus 131 LS~~afNALLKTLEE--PP~hV~FIlATTe~~Kip~TIlS--Rc 170 (515)
T COG2812 131 LSKQAFNALLKTLEE--PPSHVKFILATTEPQKIPNTILS--RC 170 (515)
T ss_pred hhHHHHHHHhccccc--CccCeEEEEecCCcCcCchhhhh--cc
Confidence 345677888888774 45578888888889999999987 65
No 152
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=72.15 E-value=3.9 Score=25.67 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHhhCC---------CCCCCeEEEEecCCCC-----CCcccccCCCcc
Q psy3374 13 GVKDRVVNQLLTELDGV---------EGLEGVYVVGATSRPD-----IIDPALLRPGRL 57 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~---------~~~~~v~vi~aTn~~~-----~lD~al~r~GRf 57 (72)
...-++-+.||+.|..- .-.+..+||||-|..+ .|++|++. ||
T Consensus 73 rappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 73 RAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp GS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred cCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 34457778888888653 1234589999999776 67777777 76
No 153
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=71.93 E-value=7.6 Score=27.21 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
....-|.||..|+. ..+++++|..|+.++.|.|.++. |+ ..+.|+.
T Consensus 108 t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~ 153 (290)
T PRK05917 108 TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPM 153 (290)
T ss_pred CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccc
Confidence 34677889999986 45567888888889999999998 77 4455543
No 154
>PRK04195 replication factor C large subunit; Provisional
Probab=71.13 E-value=12 Score=27.41 Aligned_cols=47 Identities=6% Similarity=-0.084 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcc-cccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDP-ALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~-al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+++|+..++.. +..+|.++|.+..+++ .+++ |+ ..|+|+.|+.++
T Consensus 117 ~~~~aL~~~l~~~----~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~ 164 (482)
T PRK04195 117 GGARAILELIKKA----KQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRS 164 (482)
T ss_pred hHHHHHHHHHHcC----CCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHH
Confidence 3456677776632 2345667899998888 5554 43 679999888764
No 155
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=71.11 E-value=13 Score=24.94 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
....|.++..|..- ..+..+|.+||+++.|-+.++. |. ..+.|..|+..
T Consensus 123 ~~A~nallk~lEep--~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~ 171 (325)
T COG0470 123 EDAANALLKTLEEP--PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRL 171 (325)
T ss_pred HHHHHHHHHHhccC--CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHH
Confidence 35567777777743 4467888889999999998888 77 56677665543
No 156
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=69.81 E-value=2.8 Score=30.65 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCCCC---CcccccCCCccc--cEEEeCCCChhhh
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRPDI---IDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~~~---lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
+|+..++.+...+..+|+++.+.|.. +++.++. ||. ..+.+..||.+.+
T Consensus 215 elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 215 ELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHH
Confidence 45555555533445667776677766 4566777 875 4778999998764
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=69.35 E-value=8.9 Score=30.34 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhhCC--C-------CCCCeEEEEecCCCCC-------------------------CcccccCCCccccE
Q psy3374 15 KDRVVNQLLTELDGV--E-------GLEGVYVVGATSRPDI-------------------------IDPALLRPGRLGSS 60 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~--~-------~~~~v~vi~aTn~~~~-------------------------lD~al~r~GRfd~~ 60 (72)
...+.+.||+.|+.- . .-.+.+||+|||.... +.|.|+. |||..
T Consensus 680 ~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~I 757 (852)
T TIGR03346 680 HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEI 757 (852)
T ss_pred CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeE
Confidence 346677888888642 1 1235789999998332 3355665 99999
Q ss_pred EEeCCCChhh
Q psy3374 61 VHCTMPDLAF 70 (72)
Q Consensus 61 i~v~~Pd~~~ 70 (72)
+.+..++.+.
T Consensus 758 ivF~PL~~e~ 767 (852)
T TIGR03346 758 VVFHPLGREQ 767 (852)
T ss_pred EecCCcCHHH
Confidence 9998888765
No 158
>PLN03025 replication factor C subunit; Provisional
Probab=67.92 E-value=8.6 Score=26.53 Aligned_cols=48 Identities=10% Similarity=-0.053 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.-+.|+..|+.... ...++.+||.++.+.++++. |+ ..++|+.|+.++
T Consensus 115 aq~aL~~~lE~~~~--~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~ 162 (319)
T PLN03025 115 AQQALRRTMEIYSN--TTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQE 162 (319)
T ss_pred HHHHHHHHHhcccC--CceEEEEeCCccccchhHHH--hh-hcccCCCCCHHH
Confidence 34556666664322 34456678888899999998 87 578888887654
No 159
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=66.31 E-value=7.8 Score=26.55 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=23.6
Q ss_pred CeEEEEecCCCCCCcccccCCCccccEEEeCCCC
Q psy3374 34 GVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 34 ~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd 67 (72)
+..+||||++...|.+.|+. ||.....+..=+
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~ 180 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS 180 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCC
Confidence 48899999999999999999 998876665433
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=62.07 E-value=6.4 Score=30.44 Aligned_cols=48 Identities=15% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHHHHhhCCCCCCCeEEEEecCC-C---CCCcccccCCCcccc--EEEeCCCChhhh
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSR-P---DIIDPALLRPGRLGS--SVHCTMPDLAFA 71 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~-~---~~lD~al~r~GRfd~--~i~v~~Pd~~~~ 71 (72)
+|...++.+.+.++-+|| |+|+ | ..+++.|+. ||.. .+++..||.+.+
T Consensus 398 eLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 398 EFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETR 451 (617)
T ss_pred HHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHH
Confidence 344445544333334444 5555 3 357888998 9965 668888998865
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=61.92 E-value=18 Score=24.24 Aligned_cols=48 Identities=6% Similarity=-0.047 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+.|+..++.... ...+|.++|.+..+.+++.+ |+. .++++.|+.++
T Consensus 118 ~~~~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~e 165 (319)
T PRK00440 118 AQQALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEA 165 (319)
T ss_pred HHHHHHHHHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHH
Confidence 34566666765433 34455567778888888888 775 58888887664
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=61.64 E-value=3 Score=33.07 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 33 EGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 33 ~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+.+=+||||..-+ .=|+||-| || ..|+|.-|+.+.+
T Consensus 298 GeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~t 338 (786)
T COG0542 298 GELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDT 338 (786)
T ss_pred CCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHH
Confidence 3467888887533 34999999 99 8899999998763
No 163
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.51 E-value=18 Score=27.77 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+... +..++|.+|+.+..|-++++. |+ ..++|..++.++
T Consensus 136 ~a~naLLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~e 184 (614)
T PRK14971 136 AAFNAFLKTLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVAD 184 (614)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHH
Confidence 45677888888642 345666666677899999998 87 558887776543
No 164
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=61.06 E-value=6 Score=26.07 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCCCCC---cccccCCCcccc--EEEeCCCChhhh
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRPDII---DPALLRPGRLGS--SVHCTMPDLAFA 71 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~~~l---D~al~r~GRfd~--~i~v~~Pd~~~~ 71 (72)
.-.+|...++.+...++-+|+++-..|..+ ++.|.. ||.. .+.+..||.+.+
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHH
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHH
Confidence 344556666665445566777777777765 566666 7765 788888998764
No 165
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=57.31 E-value=35 Score=25.61 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCCC-----------CCCCeEEEEecCCC-----C------------------CCcccccCCCccccEE
Q psy3374 16 DRVVNQLLTELDGVE-----------GLEGVYVVGATSRP-----D------------------IIDPALLRPGRLGSSV 61 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~-----------~~~~v~vi~aTn~~-----~------------------~lD~al~r~GRfd~~i 61 (72)
..+...|++.|+.-. ...++.+|+++|.- . .|...|+. |||..+
T Consensus 309 ~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~ 386 (499)
T TIGR00368 309 RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSV 386 (499)
T ss_pred HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEE
Confidence 355566666665321 12368899999952 1 48888888 999999
Q ss_pred EeCCCChh
Q psy3374 62 HCTMPDLA 69 (72)
Q Consensus 62 ~v~~Pd~~ 69 (72)
.++.++.+
T Consensus 387 ~~~~~~~~ 394 (499)
T TIGR00368 387 EVPLLPPE 394 (499)
T ss_pred EEcCCCHH
Confidence 99876543
No 166
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.06 E-value=21 Score=27.05 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
...+.||..|+... ..+++|.+|+.++.+.+.++. |+ ..++|..++.+
T Consensus 135 ~a~naLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~ 182 (585)
T PRK14950 135 AAFNALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVA 182 (585)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHH
Confidence 45677888887643 345666667778888888887 76 45777766554
No 167
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=56.78 E-value=29 Score=25.80 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhC---------C--CCCCCeEEEEecCC-CCCCcccccCCCccccEEEeCCCChh
Q psy3374 14 VKDRVVNQLLTELDG---------V--EGLEGVYVVGATSR-PDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~---------~--~~~~~v~vi~aTn~-~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
-...+++.||..+.. + .-.-++++|||+|- -..|=|-|+. ||...|.+..|...
T Consensus 156 L~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~ 221 (423)
T COG1239 156 LDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDL 221 (423)
T ss_pred ccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCH
Confidence 345677788777654 1 12336999999995 3456677777 99999999887654
No 168
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=54.47 E-value=16 Score=24.57 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccc
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLG 58 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd 58 (72)
.....|.||..|+. ...+++++..|..+..+.|.++. |+-
T Consensus 67 ~~~A~NaLLK~LEE--Pp~~~~fiL~t~~~~~llpTI~S--Rc~ 106 (206)
T PRK08485 67 GIEAQNALLKILEE--PPKNICFIIVAKSKNLLLPTIRS--RLI 106 (206)
T ss_pred CHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCchHHHh--hhe
Confidence 34678899999986 45567777777789999999987 663
No 169
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.57 E-value=22 Score=27.43 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.||..|+... +.+++|.+|+.++.|-+++.. |. ..+++..++.++
T Consensus 142 ~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~e 190 (620)
T PRK14954 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDE 190 (620)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHH
Confidence 34567777777542 345555566778899988888 76 678888777654
No 170
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=53.31 E-value=4.5 Score=19.09 Aligned_cols=8 Identities=75% Similarity=1.190 Sum_probs=5.1
Q ss_pred cccCCCcc
Q psy3374 50 ALLRPGRL 57 (72)
Q Consensus 50 al~r~GRf 57 (72)
|++||.||
T Consensus 22 ALlrPErF 29 (29)
T PRK14759 22 ALLRPERF 29 (29)
T ss_pred HHhCcccC
Confidence 46666666
No 171
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=49.77 E-value=19 Score=25.86 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCC-CCCC
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSR-PDII 47 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~-~~~l 47 (72)
-++..|+..|= ..+|++|+|+|+ |++|
T Consensus 145 mil~rLf~~l~----~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 145 MILKRLFEALF----KRGVVLVATSNRPPEDL 172 (362)
T ss_pred HHHHHHHHHHH----HCCCEEEecCCCChHHH
Confidence 34455555543 347999999998 4443
No 172
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=49.64 E-value=18 Score=25.41 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCC----CC-------CCCeEEEEecCCCC-------------CCcccccCCCccccEEEe-CCCCh
Q psy3374 17 RVVNQLLTELDGV----EG-------LEGVYVVGATSRPD-------------IIDPALLRPGRLGSSVHC-TMPDL 68 (72)
Q Consensus 17 ~~~~~ll~~ld~~----~~-------~~~v~vi~aTn~~~-------------~lD~al~r~GRfd~~i~v-~~Pd~ 68 (72)
.....|+..|++= .. ..+.-|+||+|-.. .+++.|+. |||..+.+ ..||.
T Consensus 136 ~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~ 210 (331)
T PF00493_consen 136 DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDE 210 (331)
T ss_dssp HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-
T ss_pred hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEecccccc
Confidence 3456677777762 11 22578899999766 59999999 99988765 55553
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=48.99 E-value=28 Score=27.73 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCC--C-------CCCCeEEEEecCCCC-------------------------CCcccccCCCccccEE
Q psy3374 16 DRVVNQLLTELDGV--E-------GLEGVYVVGATSRPD-------------------------IIDPALLRPGRLGSSV 61 (72)
Q Consensus 16 ~~~~~~ll~~ld~~--~-------~~~~v~vi~aTn~~~-------------------------~lD~al~r~GRfd~~i 61 (72)
..+.+.|++.|+.- . ...+.++|.|||... .+.|+|+. |+|..+
T Consensus 684 ~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~ii 761 (857)
T PRK10865 684 PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVV 761 (857)
T ss_pred HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeE
Confidence 45667788888642 1 123467899999732 24467777 999999
Q ss_pred EeCCCChhh
Q psy3374 62 HCTMPDLAF 70 (72)
Q Consensus 62 ~v~~Pd~~~ 70 (72)
.+..++.+.
T Consensus 762 vF~PL~~ed 770 (857)
T PRK10865 762 VFHPLGEQH 770 (857)
T ss_pred ecCCCCHHH
Confidence 888887653
No 174
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=47.75 E-value=31 Score=28.67 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=27.5
Q ss_pred CCCeEEEEecCC---CCCCcccccCCCcccc-EEEeCCCChhh
Q psy3374 32 LEGVYVVGATSR---PDIIDPALLRPGRLGS-SVHCTMPDLAF 70 (72)
Q Consensus 32 ~~~v~vi~aTn~---~~~lD~al~r~GRfd~-~i~v~~Pd~~~ 70 (72)
..+++|||.+|. ++.|++.+.. ||.. +|.|+.++.++
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDE 940 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHH
Confidence 446999999986 6678888877 7654 47777777665
No 175
>COG4811 Predicted membrane protein [Function unknown]
Probab=46.41 E-value=7.3 Score=24.85 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.2
Q ss_pred EEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 36 YVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 36 ~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
+++-..+.+..+.-.++|-||.|..|.+++
T Consensus 24 fimp~~kGkTlL~V~L~rrgr~D~~IFvgl 53 (152)
T COG4811 24 FIMPRRKGKTLLSVHLLRRGRIDSVIFVGL 53 (152)
T ss_pred HhccccCCCEEEEEehhhCCCccEEEeeee
Confidence 466777778888888999999999999875
No 176
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.20 E-value=33 Score=20.38 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.+++.+|...... ++.+++.-+.+...-+.+.+.| ||.-|+.+-+..+.
T Consensus 64 ~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~~~~~~~~~~G-~d~~~~~~~~~~~~ 116 (122)
T cd02071 64 MTLFPEVIELLRELGAG-DILVVGGGIIPPEDYELLKEMG-VAEIFGPGTSIEEI 116 (122)
T ss_pred HHHHHHHHHHHHhcCCC-CCEEEEECCCCHHHHHHHHHCC-CCEEECCCCCHHHH
Confidence 34456666666654222 4444444445554445577788 99998887765543
No 177
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=44.18 E-value=14 Score=27.13 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCCCC---CcccccCCCccc--cEEEeCCCChhhh
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRPDI---IDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~~~---lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
+|...++.+...++-+|+++...|+. +++.|.. ||. ..+.+..||.+.+
T Consensus 227 ~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 227 IFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHH
Confidence 44444444433334455555555544 4677888 886 4667788888764
No 178
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=42.33 E-value=42 Score=21.45 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=22.2
Q ss_pred EEEEecCCCCCCcccccCCCccccEEEeCCCC
Q psy3374 36 YVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 36 ~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd 67 (72)
+||.||..|+-+++..+++|++ .|.+..|-
T Consensus 90 iVIsat~~~~ii~~~~~~~~~v--iIDla~pr 119 (168)
T cd01080 90 IVIVAVGKPGLVKGDMVKPGAV--VIDVGINR 119 (168)
T ss_pred EEEEcCCCCceecHHHccCCeE--EEEccCCC
Confidence 6788888888888888886643 56666653
No 179
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=41.87 E-value=13 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=23.8
Q ss_pred CeEEEEecCCC--CCCcccccCCCccc---cEEEeC
Q psy3374 34 GVYVVGATSRP--DIIDPALLRPGRLG---SSVHCT 64 (72)
Q Consensus 34 ~v~vi~aTn~~--~~lD~al~r~GRfd---~~i~v~ 64 (72)
++.||+++|.. ..+||.++. ||+ .++++.
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~ 301 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMK 301 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEee
Confidence 57899999974 689999999 999 667664
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=41.58 E-value=31 Score=25.46 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHhhCCCCCCCeEEEEecCCCCCCc---ccccCCCcccc--EEEeCCCChhhh
Q psy3374 22 LLTELDGVEGLEGVYVVGATSRPDIID---PALLRPGRLGS--SVHCTMPDLAFA 71 (72)
Q Consensus 22 ll~~ld~~~~~~~v~vi~aTn~~~~lD---~al~r~GRfd~--~i~v~~Pd~~~~ 71 (72)
|...+..+...++-+|+.+-..|..+. |-|+. ||+. .+++..||.+.+
T Consensus 197 fFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 197 FFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETR 249 (408)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHH
Confidence 333333343344456777766676655 77888 9885 778888998764
No 181
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.97 E-value=35 Score=26.86 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=24.8
Q ss_pred CCeEEEEecC--CCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 33 EGVYVVGATS--RPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 33 ~~v~vi~aTn--~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+++|++|+ ....++++++. |+ ..++++.++.+.
T Consensus 136 g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~ed 172 (725)
T PRK13341 136 GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDED 172 (725)
T ss_pred ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHH
Confidence 4577777663 34578999998 75 468888887664
No 182
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=38.48 E-value=25 Score=21.92 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEecCCCCCCcccccCCCcc
Q psy3374 36 YVVGATSRPDIIDPALLRPGRL 57 (72)
Q Consensus 36 ~vi~aTn~~~~lD~al~r~GRf 57 (72)
+|+.+|..+..+++..++||-+
T Consensus 74 IVvsAtg~~~~i~~~~ikpGa~ 95 (140)
T cd05212 74 VVVVGSPKPEKVPTEWIKPGAT 95 (140)
T ss_pred EEEEecCCCCccCHHHcCCCCE
Confidence 5667777789999999999864
No 183
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=38.34 E-value=34 Score=19.07 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=27.6
Q ss_pred CCCeEEEEecCCCCCCcccccCCCccccEEEeCCCC
Q psy3374 32 LEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 32 ~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd 67 (72)
...|.+....+....+|.+.+..|+|.-...++-|.
T Consensus 25 ~~~vyL~~~~~~~~~~ds~~v~nG~F~f~~~~~~p~ 60 (106)
T PF14289_consen 25 GDKVYLYYYDNGKVVIDSVVVKNGKFSFKGPLDEPG 60 (106)
T ss_pred CCEEEEEEeCCCCEEEEEEEEeCCEEEEEEeCCCCE
Confidence 344666666665578999999999999888887774
No 184
>KOG2383|consensus
Probab=37.94 E-value=46 Score=25.05 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=12.2
Q ss_pred CCeEEEEecCC-CCCCc
Q psy3374 33 EGVYVVGATSR-PDIID 48 (72)
Q Consensus 33 ~~v~vi~aTn~-~~~lD 48 (72)
++|+++||+|| |++|=
T Consensus 223 ~GvVlvATSNR~P~dLY 239 (467)
T KOG2383|consen 223 NGVVLVATSNRAPEDLY 239 (467)
T ss_pred CCeEEEEeCCCChHHHh
Confidence 48999999999 45443
No 185
>PRK14700 recombination factor protein RarA; Provisional
Probab=37.85 E-value=42 Score=23.82 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=26.8
Q ss_pred CCCCeEEEEec--CCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 31 GLEGVYVVGAT--SRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 31 ~~~~v~vi~aT--n~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
+++.+++|||| |---.|-+||+. |. +.+.+...+.+
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~ 42 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLV 42 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHH
Confidence 34568888888 446789999999 87 66777766654
No 186
>COG4681 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.51 E-value=21 Score=23.38 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCc-ccccC---CCccccEEEeCCCChh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIID-PALLR---PGRLGSSVHCTMPDLA 69 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD-~al~r---~GRfd~~i~v~~Pd~~ 69 (72)
++..+|+.-.+|.++--..+ ++ +=|....+-| |++++ -++.+..|++++||++
T Consensus 34 SEt~eRmmlRlLA~~~~a~E--~l---~FtrGLs~~DEPelW~rn~~~~i~lWIelG~Pde~ 90 (181)
T COG4681 34 SETQERMMLRLLAWLKYADE--RL---AFTRGLSADDEPELWLRNDHLGIDLWIELGLPDER 90 (181)
T ss_pred chhHHHHHHHHHHHHHhcch--hh---hhccCCCCCCCHHHHhhccCccEeeeeecCCccHH
Confidence 34556777777777764433 11 2244444444 45544 4578899999999975
No 187
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=36.58 E-value=12 Score=16.97 Aligned_cols=8 Identities=75% Similarity=1.190 Sum_probs=4.4
Q ss_pred cccCCCcc
Q psy3374 50 ALLRPGRL 57 (72)
Q Consensus 50 al~r~GRf 57 (72)
|+++|.||
T Consensus 18 aLl~PErF 25 (25)
T PF09604_consen 18 ALLRPERF 25 (25)
T ss_pred HHhCcccC
Confidence 45556555
No 188
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.53 E-value=25 Score=25.18 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+.|+..|+.. .+..++|.+|+.+..+-+++.+ |+. .+++..++.++
T Consensus 143 ~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~e 190 (397)
T PRK14955 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEE 190 (397)
T ss_pred HHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHH
Confidence 345666666643 2345555566677888888887 763 67777666543
No 189
>COG1485 Predicted ATPase [General function prediction only]
Probab=36.27 E-value=45 Score=24.41 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCC-CCCC
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSR-PDII 47 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~-~~~l 47 (72)
+++.|+.+|= ..+|++++|+|. |+.|
T Consensus 149 iL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 149 ILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred HHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 4555555554 237999999998 4443
No 190
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=35.39 E-value=93 Score=18.58 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=24.0
Q ss_pred eeecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCccc
Q psy3374 2 ITGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPA 50 (72)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~a 50 (72)
|+....++..... ..+...+...+..+....++-|+..-+.+..+.|.
T Consensus 5 ilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~ 52 (155)
T PF13768_consen 5 ILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPG 52 (155)
T ss_pred EEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchh
Confidence 4555555554432 33444444444555555555565555554444444
No 191
>KOG1434|consensus
Probab=34.63 E-value=42 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcc
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDP 49 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~ 49 (72)
+...+.+|++++.|..+.++.+|-|+.|-....+.+.
T Consensus 235 seRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga 271 (335)
T KOG1434|consen 235 SERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGA 271 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcc
Confidence 3456899999999999988888888775333333333
No 192
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=32.89 E-value=27 Score=22.90 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccC---CCccccEEEeCCCChh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLR---PGRLGSSVHCTMPDLA 69 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r---~GRfd~~i~v~~Pd~~ 69 (72)
+...++.--+|...=...+. +.++ -+--+.=.|+|+. .|+....|++|.||++
T Consensus 35 Et~eRmm~RlLAf~l~a~e~---L~Ft-kGls~~dePdLw~k~~~g~i~lWIevG~Pd~k 90 (174)
T PF07152_consen 35 ETDERMMVRLLAFALNAHER---LEFT-KGLSTDDEPDLWQKDLTGRIELWIEVGQPDEK 90 (174)
T ss_dssp S-HHHHHHHHHHHHHT--TT---EEE---CCC-TTS-SEEEE-TTS-EEEEEEES---HH
T ss_pred ccHHHHHHHHHHHHHcCCcC---ceec-CCCCCCCCcceeeeCCCCCEEEEEEcCCCCHH
Confidence 44456655555554333221 2221 1222333455543 5789999999999975
No 193
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=32.84 E-value=28 Score=23.83 Aligned_cols=40 Identities=33% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEE
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSV 61 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i 61 (72)
+||.++-+-.....|+||.|.|..+.|-.|+ |.|=||+.|
T Consensus 63 ~lL~~ir~~~~~~DVI~iTAA~d~~tI~~al-r~Gv~DYLi 102 (224)
T COG4565 63 ELLPELRSQHYPVDVIVITAASDMETIKEAL-RYGVVDYLI 102 (224)
T ss_pred HHHHHHHhcCCCCCEEEEeccchHHHHHHHH-hcCchhhee
Confidence 3556665544455799999999999988865 568888765
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=32.78 E-value=48 Score=21.03 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhCC---CC------CCCeEEEEecCCCCC
Q psy3374 15 KDRVVNQLLTELDGV---EG------LEGVYVVGATSRPDI 46 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~---~~------~~~v~vi~aTn~~~~ 46 (72)
...+.+.||+.||+- .. -.++++|+|+|--..
T Consensus 92 ~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 92 GEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp HHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred HHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 347788999999875 11 236999999997543
No 195
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=30.63 E-value=39 Score=24.69 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=15.4
Q ss_pred HHHhhCCC-CCCCeEEEEecCC
Q psy3374 23 LTELDGVE-GLEGVYVVGATSR 43 (72)
Q Consensus 23 l~~ld~~~-~~~~v~vi~aTn~ 43 (72)
|++||-+. ...+-++|||||.
T Consensus 273 LQqld~L~~~~~~s~lvGtTN~ 294 (379)
T PF09794_consen 273 LQQLDLLSDPNTKSYLVGTTNS 294 (379)
T ss_pred HHHHHHhhccCccEEEEeeChH
Confidence 67888772 3345789999995
No 196
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=29.64 E-value=43 Score=19.81 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
....+++..+......=.|++++.+...+.++..++. +.+.-|++..
T Consensus 52 ~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~~~~l~--~v~~~i~l~~ 98 (115)
T PF03709_consen 52 DEAQELLDKIRERNFGIPVFLLAERDTTEDLPAEVLG--EVDGFIWLFE 98 (115)
T ss_dssp HHHHHHHHHHHHHSTT-EEEEEESCCHHHCCCHHHHC--CESEEEETTT
T ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCCcccCCHHHHh--hccEEEEecC
Confidence 4566788888876555569999998899999999999 8888777754
No 197
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=28.17 E-value=81 Score=21.80 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCCCCCeEEEEecCCCC
Q psy3374 20 NQLLTELDGVEGLEGVYVVGATSRPD 45 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v~vi~aTn~~~ 45 (72)
.+++..+-....-..++++.|+||.+
T Consensus 27 ~~~l~~l~~~~~~~e~viLsTCNR~E 52 (311)
T cd05213 27 KEALRRLLEKPGISEAVLLSTCNRVE 52 (311)
T ss_pred HHHHHHHhcCCCCceEEEEecCCeEE
Confidence 44555554333334689999999754
No 198
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=27.50 E-value=38 Score=20.47 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=25.1
Q ss_pred HHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccc
Q psy3374 23 LTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLG 58 (72)
Q Consensus 23 l~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd 58 (72)
+..+..+...-.+++|||-.+...++|.+++ .|-
T Consensus 45 l~~l~~~~~~peiliiGtG~~~~~~~~~~~~--~l~ 78 (114)
T cd05125 45 LSLFELLEPRPEILVIGTGRKSRPLSPELRK--YFK 78 (114)
T ss_pred HHHHHhccCCCCEEEEccCCCCCcCCHHHHH--HHH
Confidence 4444444445569999999999999999876 554
No 199
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=27.50 E-value=57 Score=24.37 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=22.8
Q ss_pred hhCCCCCCCeEEEEecCCCCCCcccccC
Q psy3374 26 LDGVEGLEGVYVVGATSRPDIIDPALLR 53 (72)
Q Consensus 26 ld~~~~~~~v~vi~aTn~~~~lD~al~r 53 (72)
++-+...+++++|-.|.+-..++.||-+
T Consensus 78 l~~~~~~~G~iiVDsTRrGK~~PDalSk 105 (451)
T PF04179_consen 78 LPLIAEHGGCIIVDSTRRGKRMPDALSK 105 (451)
T ss_pred HHHhhcCCcEEEEecccCCCCCChhhhc
Confidence 3334567789999999999999999876
No 200
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=26.19 E-value=14 Score=16.97 Aligned_cols=9 Identities=67% Similarity=1.029 Sum_probs=5.6
Q ss_pred cccCCCccc
Q psy3374 50 ALLRPGRLG 58 (72)
Q Consensus 50 al~r~GRfd 58 (72)
|++||.||.
T Consensus 17 aLl~PErF~ 25 (26)
T TIGR02115 17 ALLRPERFX 25 (26)
T ss_pred HHhCHHhcC
Confidence 466666664
No 201
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=25.90 E-value=1.4e+02 Score=18.93 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
.-+++++..+..-...+-+||||. ++-++++++. |.|..+-++.
T Consensus 83 ~~fA~~l~~~~~~g~~~i~F~IGG---a~G~~~~v~~--~a~~~lSLS~ 126 (157)
T PRK00103 83 EEFAQELERWRDDGRSDVAFVIGG---ADGLSPAVKK--RADQSLSLSK 126 (157)
T ss_pred HHHHHHHHHHHhcCCccEEEEEcC---ccccCHHHHH--hcCceEEecc
Confidence 344555554422112234778876 6788999999 9988887764
No 202
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=25.84 E-value=1e+02 Score=23.00 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=27.3
Q ss_pred CCCCCCCeEEEEecCCCCCCcccccC-----------CCccccEEEe
Q psy3374 28 GVEGLEGVYVVGATSRPDIIDPALLR-----------PGRLGSSVHC 63 (72)
Q Consensus 28 ~~~~~~~v~vi~aTn~~~~lD~al~r-----------~GRfd~~i~v 63 (72)
..++...|+|..-||-.+..+.-+-| -||+|+.+-+
T Consensus 136 evKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIv 182 (429)
T COG1029 136 EVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIV 182 (429)
T ss_pred hhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEE
Confidence 34556679999999999998887766 5788885543
No 203
>PF12846 AAA_10: AAA-like domain
Probab=25.61 E-value=21 Score=23.38 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCCeEEEEecCCCCCCc-----ccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPDIID-----PALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~~lD-----~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+.++.++.+|..|.+++ ++++. -+..+|.+.+++.+.+
T Consensus 251 k~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i~~~~~~~~~~ 293 (304)
T PF12846_consen 251 KYGVGLILATQSPSDLPKSPIEDAILA--NCNTKIIFRLEDSDDA 293 (304)
T ss_pred hcCCEEEEeeCCHHHHhccchHHHHHH--hCCcEEEecCChHHHH
Confidence 44688889999999999 78888 7888888888876653
No 204
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=24.98 E-value=52 Score=21.53 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=18.3
Q ss_pred eEEEEecCCCCCC-cccccCCCccccEEEeC
Q psy3374 35 VYVVGATSRPDII-DPALLRPGRLGSSVHCT 64 (72)
Q Consensus 35 v~vi~aTn~~~~l-D~al~r~GRfd~~i~v~ 64 (72)
.+++||||..+-| |+.=-| || ..|+++
T Consensus 141 ~~figTtN~~~~L~D~TGnR--Rf-~~v~v~ 168 (198)
T PF05272_consen 141 AVFIGTTNDDDFLKDPTGNR--RF-WPVEVS 168 (198)
T ss_pred EEEEeccCCcceeeCCCCCe--EE-EEEEEc
Confidence 7889999998844 555667 77 334443
No 205
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=24.58 E-value=1.8e+02 Score=19.68 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=26.0
Q ss_pred eeecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeC
Q psy3374 2 ITGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCT 64 (72)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~ 64 (72)
+++...-++=+......+-.++.++.. ..+..+|..|- |+.+.. ++|+.|++.
T Consensus 164 ilADEPTgnLD~~t~~~V~~ll~~~~~---~~g~tii~VTH-----d~~lA~--~~dr~i~l~ 216 (226)
T COG1136 164 ILADEPTGNLDSKTAKEVLELLRELNK---ERGKTIIMVTH-----DPELAK--YADRVIELK 216 (226)
T ss_pred EEeeCccccCChHHHHHHHHHHHHHHH---hcCCEEEEEcC-----CHHHHH--hCCEEEEEe
Confidence 344443333333333444445555542 22333444444 566666 888888763
No 206
>KOG3052|consensus
Probab=24.47 E-value=46 Score=23.53 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=25.5
Q ss_pred CCCCCcccccCCCccccEEEeCCCChhhhC
Q psy3374 43 RPDIIDPALLRPGRLGSSVHCTMPDLAFAS 72 (72)
Q Consensus 43 ~~~~lD~al~r~GRfd~~i~v~~Pd~~~~~ 72 (72)
.|++=-.-+.|||.+.-.+.=|.|++++|+
T Consensus 142 gpdd~G~~~~RPGkLsD~~P~PYpNeeAAr 171 (311)
T KOG3052|consen 142 GPDDEGEMFTRPGKLSDYFPSPYPNEEAAR 171 (311)
T ss_pred CCCCCCCcccCCccccccCCCCCCCHHHHH
Confidence 366767778999999999999999999874
No 207
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=23.84 E-value=98 Score=25.37 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=26.0
Q ss_pred CCeEEEEecCCC-------------CCCcccccCCCccccEEE-eCCCChh
Q psy3374 33 EGVYVVGATSRP-------------DIIDPALLRPGRLGSSVH-CTMPDLA 69 (72)
Q Consensus 33 ~~v~vi~aTn~~-------------~~lD~al~r~GRfd~~i~-v~~Pd~~ 69 (72)
.+.-||||+|-. -.|+++|+. |||..+- ++.||.+
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQD 647 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChH
Confidence 468899999964 257899999 9998644 4566654
No 208
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=23.67 E-value=89 Score=24.98 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=35.5
Q ss_pred HHHHHHHhhCCCCCCCeEEEEecCCCCC-CcccccCCCccccEEEeCCCChhh
Q psy3374 19 VNQLLTELDGVEGLEGVYVVGATSRPDI-IDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 19 ~~~ll~~ld~~~~~~~v~vi~aTn~~~~-lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
+...+..|.......++-+|.||.||+. +-+.++. -|..+|.+.+-+...
T Consensus 659 ve~~i~rLa~~ara~GIHlilatqRps~dVit~ika--nipsrIaf~v~s~~d 709 (858)
T COG1674 659 LEELIARLAQKGRAAGIHLILATQRPSVDVITGIKA--NIPTRIALRLSSKID 709 (858)
T ss_pred HHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHh--CCcceEEEEEcCccc
Confidence 4444555555445567999999999998 7776666 888888887766543
No 209
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.87 E-value=46 Score=19.56 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHhhCCCCCCCeEEEEecCCCCCCcccccCCCcc
Q psy3374 24 TELDGVEGLEGVYVVGATSRPDIIDPALLRPGRL 57 (72)
Q Consensus 24 ~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRf 57 (72)
..+........++||||-....-+++.+++ .|
T Consensus 45 ~~l~~~~p~pe~liiGtG~~~~~~~~~~~~--~l 76 (110)
T PF04430_consen 45 EELLELEPKPEVLIIGTGKRQLFLPPELRE--YL 76 (110)
T ss_dssp HHHHCTCCS-SEEEEEETTS-SECTHHHHH--HH
T ss_pred HHHHhccCCCcEEEEccCCccccCCHHHHH--HH
Confidence 333333445579999999998889998877 55
No 210
>PRK13796 GTPase YqeH; Provisional
Probab=22.09 E-value=88 Score=22.29 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=14.0
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCC
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRP 44 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~ 44 (72)
+++..+........++|+|.||--
T Consensus 149 eL~~~I~~~~~~~~v~vvG~~NvG 172 (365)
T PRK13796 149 ELLEAIEKYREGRDVYVVGVTNVG 172 (365)
T ss_pred HHHHHHHHhcCCCeEEEEcCCCCc
Confidence 334444333334568899999863
No 211
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=21.71 E-value=96 Score=21.23 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=19.6
Q ss_pred HHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccC
Q psy3374 19 VNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLR 53 (72)
Q Consensus 19 ~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r 53 (72)
+.++...+. ..++|+ -++||...+||.++.
T Consensus 11 ~~~~~e~ip---~~~~vI--l~sNH~S~~Dp~ii~ 40 (235)
T cd07985 11 FDRIEEQLA---QGHNVV--LLANHQTEADPAVIS 40 (235)
T ss_pred HHHHHHhcc---CCCCEE--EEECCcccccHHHHH
Confidence 444444444 344444 568999999998764
No 212
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=21.59 E-value=76 Score=23.81 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCC--------CCCCeEEEEec----CCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVE--------GLEGVYVVGAT----SRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~--------~~~~v~vi~aT----n~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+-..||..|+|-. ...++++||+- ..|++|=|.|.- ||...+++...+.+.
T Consensus 275 eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~~d 339 (443)
T PRK05201 275 EGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDALTEED 339 (443)
T ss_pred cchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHH
Confidence 356678999999841 23468888764 357888888877 999999998887653
No 213
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=21.29 E-value=60 Score=22.20 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=20.1
Q ss_pred CeEEEEecCCC---CCCcccccCCCccccEEEeCCCChhh
Q psy3374 34 GVYVVGATSRP---DIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 34 ~v~vi~aTn~~---~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
++.++||.|-+ ..|++-++| .| ..+.++.|+.+.
T Consensus 148 ~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~s 184 (272)
T PF12775_consen 148 DIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDES 184 (272)
T ss_dssp SEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCH
T ss_pred eeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHH
Confidence 58888988742 246777777 66 578888888653
No 214
>PF05201 GlutR_N: Glutamyl-tRNAGlu reductase, N-terminal domain; InterPro: IPR015895 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the N-terminal domain of glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A.
Probab=20.99 E-value=51 Score=20.65 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=10.2
Q ss_pred CCCeEEEEecCCCC
Q psy3374 32 LEGVYVVGATSRPD 45 (72)
Q Consensus 32 ~~~v~vi~aTn~~~ 45 (72)
-..++++.|+||.+
T Consensus 36 i~e~viLsTCNR~E 49 (152)
T PF05201_consen 36 IEEAVILSTCNRVE 49 (152)
T ss_dssp -SEEEEEEETTEEE
T ss_pred CceEEEeecCCeEE
Confidence 34689999999643
No 215
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.69 E-value=83 Score=17.99 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=15.2
Q ss_pred CCccccEEEeCCCChhhh
Q psy3374 54 PGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 54 ~GRfd~~i~v~~Pd~~~~ 71 (72)
.|+.|..+-+..||.+++
T Consensus 43 ~G~yD~v~i~eaPD~~~a 60 (91)
T PF08734_consen 43 LGEYDFVVIVEAPDDETA 60 (91)
T ss_pred cCCCCEEEEEEcCCHHHH
Confidence 568999999999998865
Done!