Query psy3374
Match_columns 72
No_of_seqs 146 out of 1108
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:25:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 2.9E-20 9.8E-25 131.9 6.9 59 13-71 266-324 (405)
2 4b4t_L 26S protease subunit RP 99.8 8.2E-20 2.8E-24 130.4 7.1 60 12-71 298-357 (437)
3 4b4t_M 26S protease regulatory 99.8 8.6E-20 3E-24 130.2 6.8 58 14-71 300-357 (434)
4 4b4t_I 26S protease regulatory 99.8 9E-20 3.1E-24 130.4 6.9 59 13-71 300-358 (437)
5 4b4t_K 26S protease regulatory 99.8 1.6E-19 5.4E-24 128.6 5.7 60 12-71 289-349 (428)
6 3cf2_A TER ATPase, transitiona 99.8 8.1E-20 2.8E-24 137.8 4.5 61 11-71 593-653 (806)
7 4b4t_H 26S protease regulatory 99.8 7.6E-19 2.6E-23 126.4 6.7 59 13-71 327-385 (467)
8 3cf2_A TER ATPase, transitiona 99.7 1.9E-17 6.4E-22 125.0 6.2 69 3-71 309-377 (806)
9 2x8a_A Nuclear valosin-contain 99.5 2.6E-15 9E-20 100.6 4.2 58 14-71 126-183 (274)
10 3cf0_A Transitional endoplasmi 99.4 1.6E-13 5.3E-18 92.3 6.4 59 13-71 133-191 (301)
11 2ce7_A Cell division protein F 99.4 3.3E-13 1.1E-17 97.0 5.2 60 12-71 132-191 (476)
12 1lv7_A FTSH; alpha/beta domain 99.4 1.7E-12 5.7E-17 84.7 8.0 58 14-71 130-187 (257)
13 1ypw_A Transitional endoplasmi 99.4 7.1E-14 2.4E-18 105.0 0.6 59 13-71 595-653 (806)
14 1xwi_A SKD1 protein; VPS4B, AA 99.3 1.7E-12 5.9E-17 88.3 6.3 65 5-71 119-184 (322)
15 2dhr_A FTSH; AAA+ protein, hex 99.3 3.5E-12 1.2E-16 92.1 6.6 60 12-71 147-206 (499)
16 1ixz_A ATP-dependent metallopr 99.3 5.4E-12 1.8E-16 82.2 6.6 59 13-71 133-191 (254)
17 3hu3_A Transitional endoplasmi 99.3 5.4E-12 1.8E-16 90.7 6.3 67 5-71 311-377 (489)
18 1g41_A Heat shock protein HSLU 99.3 4.6E-13 1.6E-17 95.8 -0.3 57 11-69 124-181 (444)
19 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.1E-11 3.6E-16 80.3 5.6 58 14-71 125-182 (262)
20 3eie_A Vacuolar protein sortin 99.2 5.9E-12 2E-16 85.1 3.7 65 5-71 124-189 (322)
21 1iy2_A ATP-dependent metallopr 99.2 2.6E-11 9E-16 80.1 6.5 59 13-71 157-215 (278)
22 2zan_A Vacuolar protein sortin 99.2 1.6E-11 5.5E-16 86.7 5.2 65 5-71 241-306 (444)
23 2qp9_X Vacuolar protein sortin 99.2 1.3E-11 4.4E-16 84.9 3.7 64 6-71 158-222 (355)
24 3h4m_A Proteasome-activating n 99.1 7.1E-11 2.4E-15 77.6 5.6 59 13-71 135-193 (285)
25 3t15_A Ribulose bisphosphate c 99.1 3.8E-11 1.3E-15 80.7 3.3 56 14-71 124-190 (293)
26 2r62_A Cell division protease 99.0 3.6E-11 1.2E-15 78.5 0.2 55 17-71 133-188 (268)
27 1ypw_A Transitional endoplasmi 99.0 1.4E-09 4.6E-14 81.9 7.3 66 6-71 312-377 (806)
28 3d8b_A Fidgetin-like protein 1 98.9 8.6E-10 2.9E-14 75.6 4.9 61 9-71 194-256 (357)
29 3b9p_A CG5977-PA, isoform A; A 98.9 7.9E-10 2.7E-14 73.0 3.0 58 12-71 134-194 (297)
30 3vfd_A Spastin; ATPase, microt 98.8 1.5E-09 5E-14 74.9 3.5 60 10-71 226-287 (389)
31 2c9o_A RUVB-like 1; hexameric 98.6 1E-08 3.5E-13 72.3 1.4 51 18-68 172-226 (456)
32 3m6a_A ATP-dependent protease 97.8 7.5E-06 2.6E-10 59.2 2.0 51 18-71 195-258 (543)
33 1ofh_A ATP-dependent HSL prote 97.5 0.0001 3.6E-09 48.0 4.1 52 17-70 143-206 (310)
34 3pfi_A Holliday junction ATP-d 97.5 0.00016 5.4E-09 48.2 4.9 54 16-71 120-189 (338)
35 1d2n_A N-ethylmaleimide-sensit 97.4 6.3E-05 2.2E-09 49.0 2.5 53 14-68 146-200 (272)
36 3syl_A Protein CBBX; photosynt 97.4 4.8E-05 1.7E-09 50.0 1.4 53 15-71 152-209 (309)
37 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00066 2.3E-08 44.6 5.1 36 34-71 138-173 (324)
38 2r44_A Uncharacterized protein 97.1 0.0006 2.1E-08 45.4 4.4 54 16-71 123-190 (331)
39 1g8p_A Magnesium-chelatase 38 97.0 0.00091 3.1E-08 44.3 4.7 49 17-67 159-219 (350)
40 1jbk_A CLPB protein; beta barr 96.8 7.3E-05 2.5E-09 44.8 -1.6 36 33-71 150-190 (195)
41 3pxi_A Negative regulator of g 96.7 0.0012 4.1E-08 48.9 3.7 37 32-71 289-330 (758)
42 3pxg_A Negative regulator of g 96.7 0.0012 4.1E-08 46.7 3.4 37 32-71 289-330 (468)
43 2p65_A Hypothetical protein PF 96.6 7.2E-05 2.5E-09 45.0 -3.1 32 33-67 151-187 (187)
44 2v1u_A Cell division control p 96.5 0.0036 1.2E-07 41.6 4.6 54 16-71 149-206 (387)
45 3f9v_A Minichromosome maintena 96.5 0.0025 8.5E-08 46.6 4.1 51 17-69 406-481 (595)
46 3pxi_A Negative regulator of g 96.5 0.0028 9.5E-08 47.0 4.2 54 15-70 592-666 (758)
47 2chg_A Replication factor C sm 96.4 0.0037 1.3E-07 38.0 4.1 50 17-71 117-166 (226)
48 4fcw_A Chaperone protein CLPB; 96.4 0.0012 4E-08 43.2 1.8 53 16-70 133-220 (311)
49 3u61_B DNA polymerase accessor 96.3 0.0017 5.7E-08 43.0 2.0 50 16-70 120-169 (324)
50 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0028 9.7E-08 46.8 3.2 54 15-70 570-657 (758)
51 4akg_A Glutathione S-transfera 96.2 0.0072 2.5E-07 50.9 5.5 35 34-71 1384-1423(2695)
52 1a5t_A Delta prime, HOLB; zinc 96.0 0.01 3.6E-07 39.9 4.9 50 16-70 122-171 (334)
53 1njg_A DNA polymerase III subu 96.0 0.013 4.4E-07 35.8 4.9 51 16-71 140-190 (250)
54 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0051 1.8E-07 45.4 3.2 38 31-71 312-354 (758)
55 2qby_B CDC6 homolog 3, cell di 95.7 0.015 5.2E-07 38.8 4.4 37 33-71 163-202 (384)
56 3uk6_A RUVB-like 2; hexameric 95.6 0.014 4.9E-07 38.9 4.1 50 17-71 204-264 (368)
57 1qvr_A CLPB protein; coiled co 95.5 0.0049 1.7E-07 46.4 1.6 46 19-71 288-337 (854)
58 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.017 5.7E-07 41.7 3.8 53 15-69 122-185 (500)
59 3hws_A ATP-dependent CLP prote 95.0 0.066 2.3E-06 36.1 5.9 22 47-70 239-260 (363)
60 2qby_A CDC6 homolog 1, cell di 94.9 0.033 1.1E-06 36.7 4.3 52 17-71 147-202 (386)
61 1sxj_E Activator 1 40 kDa subu 94.8 0.049 1.7E-06 36.1 5.0 49 17-70 149-197 (354)
62 1um8_A ATP-dependent CLP prote 94.8 0.016 5.4E-07 39.3 2.5 47 17-67 166-231 (376)
63 2chq_A Replication factor C sm 94.6 0.021 7.1E-07 37.0 2.6 49 17-70 117-165 (319)
64 3bos_A Putative DNA replicatio 94.5 0.011 3.8E-07 36.6 1.1 51 19-71 123-179 (242)
65 1jr3_A DNA polymerase III subu 94.4 0.074 2.5E-06 35.2 5.0 50 16-70 133-182 (373)
66 2z4s_A Chromosomal replication 94.4 0.011 3.7E-07 41.5 0.9 51 19-71 213-268 (440)
67 1l8q_A Chromosomal replication 94.3 0.015 5E-07 38.6 1.4 49 20-71 118-171 (324)
68 2gno_A DNA polymerase III, gam 94.2 0.038 1.3E-06 37.2 3.3 48 16-70 96-143 (305)
69 1iqp_A RFCS; clamp loader, ext 94.2 0.045 1.5E-06 35.5 3.6 49 17-70 125-173 (327)
70 1svm_A Large T antigen; AAA+ f 94.1 0.0075 2.6E-07 42.1 -0.4 40 20-65 245-284 (377)
71 1sxj_D Activator 1 41 kDa subu 93.9 0.044 1.5E-06 36.1 3.1 49 17-70 148-196 (353)
72 1sxj_B Activator 1 37 kDa subu 93.8 0.051 1.8E-06 35.2 3.2 50 17-71 122-171 (323)
73 1fnn_A CDC6P, cell division co 92.1 0.065 2.2E-06 35.6 1.8 53 16-70 139-197 (389)
74 1qvr_A CLPB protein; coiled co 91.5 0.12 4E-06 39.0 2.8 54 15-70 673-761 (854)
75 3te6_A Regulatory protein SIR3 91.3 0.24 8.1E-06 33.8 4.0 51 16-70 147-202 (318)
76 3pvs_A Replication-associated 90.6 0.11 3.7E-06 36.7 1.8 45 19-70 123-169 (447)
77 1in4_A RUVB, holliday junction 90.5 0.15 5E-06 34.2 2.4 35 34-70 150-184 (334)
78 2c9o_A RUVB-like 1; hexameric 89.7 0.46 1.6E-05 33.2 4.4 50 16-70 309-370 (456)
79 1g41_A Heat shock protein HSLU 88.5 0.64 2.2E-05 33.1 4.5 52 17-70 277-340 (444)
80 1ojl_A Transcriptional regulat 88.0 0.43 1.5E-05 31.6 3.2 51 17-70 111-177 (304)
81 1sxj_C Activator 1 40 kDa subu 87.6 0.73 2.5E-05 30.5 4.1 49 17-70 125-173 (340)
82 2bjv_A PSP operon transcriptio 84.9 0.52 1.8E-05 30.0 2.2 50 17-69 115-180 (265)
83 2r2a_A Uncharacterized protein 84.3 0.43 1.5E-05 30.2 1.6 44 22-68 112-155 (199)
84 3f8t_A Predicted ATPase involv 83.6 0.45 1.5E-05 34.8 1.6 53 15-69 313-384 (506)
85 3k1j_A LON protease, ATP-depen 79.6 0.32 1.1E-05 35.2 -0.3 23 34-58 252-276 (604)
86 1w5s_A Origin recognition comp 78.2 0.84 2.9E-05 30.4 1.4 52 17-70 159-219 (412)
87 1sxj_A Activator 1 95 kDa subu 77.1 5.5 0.00019 28.1 5.5 48 18-71 167-214 (516)
88 3cmw_A Protein RECA, recombina 74.4 0.78 2.7E-05 37.7 0.5 38 13-51 1188-1225(1706)
89 2vhj_A Ntpase P4, P4; non- hyd 70.6 0.79 2.7E-05 31.7 -0.2 35 16-51 208-242 (331)
90 3vkg_A Dynein heavy chain, cyt 69.1 3.7 0.00013 35.9 3.3 35 33-70 1421-1460(3245)
91 3co5_A Putative two-component 67.2 2.5 8.4E-05 24.6 1.5 26 18-44 91-116 (143)
92 3c0u_A Uncharacterized protein 49.8 47 0.0016 21.1 5.5 16 54-69 77-92 (183)
93 2g3w_A YAEQ protein, hypotheti 48.0 9.2 0.00031 24.4 1.8 53 13-69 35-90 (182)
94 2ot9_A Hypothetical protein; Y 47.8 9.3 0.00032 24.3 1.8 53 13-69 35-90 (180)
95 2iut_A DNA translocase FTSK; n 46.3 20 0.00069 26.4 3.6 48 21-70 365-414 (574)
96 4akg_A Glutathione S-transfera 38.4 23 0.00077 30.7 3.1 34 34-70 747-784 (2695)
97 3n70_A Transport activator; si 31.7 32 0.0011 19.6 2.3 26 17-44 91-116 (145)
98 1edz_A 5,10-methylenetetrahydr 31.0 52 0.0018 22.3 3.5 29 36-66 248-277 (320)
99 2ius_A DNA translocase FTSK; n 28.0 36 0.0012 24.5 2.4 48 21-70 319-368 (512)
100 3enc_A Protein PCC1; dimerizat 27.2 25 0.00084 19.6 1.1 23 47-71 3-25 (87)
101 3vkg_A Dynein heavy chain, cyt 26.9 69 0.0024 28.5 4.1 35 33-70 706-744 (3245)
102 1o6d_A Hypothetical UPF0247 pr 26.0 63 0.0022 19.9 3.0 43 17-65 81-123 (163)
103 1to0_A Hypothetical UPF0247 pr 24.3 52 0.0018 20.3 2.4 44 17-65 86-129 (167)
104 3cpt_A Mitogen-activated prote 23.5 71 0.0024 19.5 2.8 30 13-42 22-56 (143)
105 2kjq_A DNAA-related protein; s 21.4 20 0.00068 21.0 0.0 28 36-65 118-147 (149)
106 1jr3_D DNA polymerase III, del 21.1 1.2E+02 0.0041 19.6 3.8 49 17-69 92-145 (343)
107 2c2x_A Methylenetetrahydrofola 20.2 79 0.0027 21.1 2.8 29 36-66 206-234 (281)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.9e-20 Score=131.92 Aligned_cols=59 Identities=39% Similarity=0.636 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+++++||++||++...++|+||||||+|+.||||++||||||++|+|++||.+++
T Consensus 266 ~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R 324 (405)
T 4b4t_J 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR 324 (405)
T ss_dssp GHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence 34568999999999999888899999999999999999999999999999999999876
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.2e-20 Score=130.40 Aligned_cols=60 Identities=42% Similarity=0.660 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+....+++++||++||++...++|+||+|||+|+.|||||+||||||++|+|++||.+++
T Consensus 298 ~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp TTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred chHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHH
Confidence 344668899999999999888899999999999999999999999999999999999876
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.6e-20 Score=130.18 Aligned_cols=58 Identities=38% Similarity=0.591 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+++++||++||++...++|+||||||+|+.||||++||||||++|+|++||.+++
T Consensus 300 ~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R 357 (434)
T 4b4t_M 300 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSR 357 (434)
T ss_dssp HHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHH
Confidence 4567899999999999888899999999999999999999999999999999999886
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=9e-20 Score=130.41 Aligned_cols=59 Identities=36% Similarity=0.579 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+++++||++||++...++|+||+|||+|+.|||||+||||||++|+|++||.+++
T Consensus 300 ~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R 358 (437)
T 4b4t_I 300 REIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTK 358 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHH
T ss_pred HHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHH
Confidence 45678999999999999888899999999999999999999999999999999999886
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.6e-19 Score=128.61 Aligned_cols=60 Identities=38% Similarity=0.587 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeC-CCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCT-MPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~-~Pd~~~~ 71 (72)
+....+++++||++|||+....+|+||||||+|+.||||++||||||++|+|+ +||.+++
T Consensus 289 ~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 289 DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp CCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence 44567999999999999988889999999999999999999999999999995 8999876
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=8.1e-20 Score=137.79 Aligned_cols=61 Identities=51% Similarity=0.890 Sum_probs=48.3
Q ss_pred CcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 11 ~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++..++++++||++||++...++|+||||||+|+.||+|++||||||++|+|++||.+++
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp -----CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred CchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 3456779999999999999888899999999999999999999999999999999999876
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.6e-19 Score=126.44 Aligned_cols=59 Identities=41% Similarity=0.666 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+++++||++||++...++|+||+|||+|+.||+|++||||||++|+|++||.++|
T Consensus 327 ~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 327 NEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp GHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHH
Confidence 34567899999999999888899999999999999999999999999999999999886
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.69 E-value=1.9e-17 Score=125.00 Aligned_cols=69 Identities=39% Similarity=0.546 Sum_probs=62.8
Q ss_pred eecccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 3 TGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++++|+++.++..++++++||.+||++...++|+||+|||+|+.||+||+||||||++|+|++||.++|
T Consensus 309 l~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R 377 (806)
T 3cf2_A 309 IAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp TCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHH
T ss_pred cccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHH
Confidence 356677666777889999999999999888899999999999999999999999999999999999876
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=100.56 Aligned_cols=58 Identities=53% Similarity=0.853 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+++++++.+|++......++++++||+|+.||+|++||||||+.|++++||.+++
T Consensus 126 ~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 126 ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp -CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred HHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 3457889999999999877789999999999999999999999999999999999875
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.44 E-value=1.6e-13 Score=92.27 Aligned_cols=59 Identities=53% Similarity=0.924 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+...+++++||.+|+++....+++||+|||+++.||++++|+|||+..|++++|+.+++
T Consensus 133 ~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 191 (301)
T 3cf0_A 133 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191 (301)
T ss_dssp CSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred hHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHH
Confidence 34568899999999999777789999999999999999999999999999999999875
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.38 E-value=3.3e-13 Score=97.03 Aligned_cols=60 Identities=45% Similarity=0.794 Sum_probs=53.9
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+....+++++||.+||++....+++||+|||+|+.||++++||||||+.|+|++||.+++
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 344568899999999998777789999999999999999999999999999999998765
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.38 E-value=1.7e-12 Score=84.73 Aligned_cols=58 Identities=48% Similarity=0.877 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.++++|.+|+++....+++||+|||+++.+|++++|+|||++.+++++|+.+++
T Consensus 130 ~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 4457899999999999777789999999999999999999999999999999998865
No 13
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.36 E-value=7.1e-14 Score=104.97 Aligned_cols=59 Identities=53% Similarity=0.924 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+++++||.+||++....+++||+|||+|+.||+|++||||||..|++++|+.+++
T Consensus 595 ~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp HHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHH
T ss_pred hhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHH
Confidence 35678999999999999877889999999999999999999999999999999998865
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.7e-12 Score=88.29 Aligned_cols=65 Identities=25% Similarity=0.472 Sum_probs=56.1
Q ss_pred cccCCCCcchhHHHHHHHHHHhhCCC-CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGNDSTGVKDRVVNQLLTELDGVE-GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++.....+...+++++||.+||++. ...+++||+|||+|+.||++++| ||+..|++++|+.+++
T Consensus 119 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 184 (322)
T 1xwi_A 119 GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHAR 184 (322)
T ss_dssp CCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred cccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHH
Confidence 34444455667799999999999985 45789999999999999999999 9999999999998875
No 15
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.31 E-value=3.5e-12 Score=92.11 Aligned_cols=60 Identities=43% Similarity=0.736 Sum_probs=54.3
Q ss_pred cchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+....+.++++|.+|++......++++++||+|+.||++++|+||||+.|+|++||.+++
T Consensus 147 ~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 147 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp SHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred cHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 344568899999999999777789999999999999999999999999999999999865
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.30 E-value=5.4e-12 Score=82.17 Aligned_cols=59 Identities=44% Similarity=0.746 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+.+++++.+|++......++++++||+|+.||++++|+||||+.|++++||.+++
T Consensus 133 ~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 133 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 34567889999999998777779999999999999999999999999999999999865
No 17
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.28 E-value=5.4e-12 Score=90.67 Aligned_cols=67 Identities=40% Similarity=0.563 Sum_probs=58.8
Q ss_pred cccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++....++...++.++||..|+++....+++||+|||+++.||++++|+|||+..|++++|+.+++
T Consensus 311 ~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 311 PKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred cccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHH
Confidence 3444444566778999999999998777889999999999999999999999999999999998875
No 18
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.26 E-value=4.6e-13 Score=95.81 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHhhCCCCCCCeEEEEe-cCCCCCCcccccCCCccccEEEeCCCChh
Q psy3374 11 STGVKDRVVNQLLTELDGVEGLEGVYVVGA-TSRPDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 11 ~~~~~~~~~~~ll~~ld~~~~~~~v~vi~a-Tn~~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
.+...++++++||.+||++.....+ +++ ||+|+.||+||+|+||||++|+|++|+..
T Consensus 124 ~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 124 EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp ------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 3445679999999999999665554 444 99999999999999999999999999986
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=80.28 Aligned_cols=58 Identities=41% Similarity=0.679 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.....+++|+.++++.....++++|+|||.++.+|++++|+|||+..+++++|+.+++
T Consensus 125 ~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r 182 (262)
T 2qz4_A 125 EEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182 (262)
T ss_dssp --CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHH
T ss_pred hHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHH
Confidence 3457889999999998777789999999999999999999999999999999998875
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.22 E-value=5.9e-12 Score=85.13 Aligned_cols=65 Identities=34% Similarity=0.545 Sum_probs=52.7
Q ss_pred cccCCCCcchhHHHHHHHHHHhhCCC-CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGNDSTGVKDRVVNQLLTELDGVE-GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++++++.++...++.++|+.+|+++. ...+++||+|||+|+.||++++| ||+..|++++|+.+++
T Consensus 124 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 124 GTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 189 (322)
T ss_dssp CC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHH
T ss_pred ccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHH
Confidence 33444445567789999999999984 55679999999999999999999 9999999999999875
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.21 E-value=2.6e-11 Score=80.15 Aligned_cols=59 Identities=44% Similarity=0.746 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
......+++++.+|++......++++++||+|+.||++++|+|||++.|++++|+.+++
T Consensus 157 ~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 157 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 34567889999999998766679999999999999999999999999999999998865
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.20 E-value=1.6e-11 Score=86.73 Aligned_cols=65 Identities=25% Similarity=0.477 Sum_probs=55.8
Q ss_pred cccCCCCcchhHHHHHHHHHHhhCCC-CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 5 YRRGNDSTGVKDRVVNQLLTELDGVE-GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 5 ~~r~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++.....+...+++++||.+|+++. ...+++||+|||+|+.||++++| ||+..+++++|+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 306 (444)
T 2zan_A 241 GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHAR 306 (444)
T ss_dssp CCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHH
T ss_pred cCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHH
Confidence 34444455667899999999999985 35689999999999999999999 9999999999998865
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.17 E-value=1.3e-11 Score=84.90 Aligned_cols=64 Identities=34% Similarity=0.576 Sum_probs=51.3
Q ss_pred ccCCCCcchhHHHHHHHHHHhhCCCC-CCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 6 RRGNDSTGVKDRVVNQLLTELDGVEG-LEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 6 ~r~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+++.+.+....++.++||.+|+++.. ..+++||+|||+|+.||++++| ||+..+++++|+.+++
T Consensus 158 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 158 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 222 (355)
T ss_dssp ------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHH
Confidence 33344455677899999999999853 5679999999999999999999 9999999999998875
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.13 E-value=7.1e-11 Score=77.56 Aligned_cols=59 Identities=42% Similarity=0.707 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
......+.+++.+++++....+++||+|||.++.+|++++|+|||+..++++.|+.+++
T Consensus 135 ~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 135 REVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp GHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 34557888999999998777789999999999999999999999999999999998875
No 25
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.10 E-value=3.8e-11 Score=80.66 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhhCCC-----------CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 14 VKDRVVNQLLTELDGVE-----------GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~-----------~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+.+.|++.||+.. ...+++||+|||+++.||++++|+||||..|+ +|+.+++
T Consensus 124 ~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 124 NNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred hHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 34467799999998553 44579999999999999999999999999998 5787764
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.01 E-value=3.6e-11 Score=78.50 Aligned_cols=55 Identities=45% Similarity=0.744 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhCCCC-CCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGVEG-LEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~-~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+.+++|+..|++... ..+++||+|||.++.+|++++|+|||+..|++++|+.+++
T Consensus 133 ~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r 188 (268)
T 2r62_A 133 QTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGR 188 (268)
T ss_dssp SSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTH
T ss_pred HHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHH
Confidence 567888999998743 3459999999999999999999999999999999998865
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.97 E-value=1.4e-09 Score=81.86 Aligned_cols=66 Identities=41% Similarity=0.587 Sum_probs=57.9
Q ss_pred ccCCCCcchhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 6 RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 6 ~r~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.++....+...+++++|+..|+++....++++|+|||+++.+|+++.|+|||++.+++++|+.+++
T Consensus 312 ~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 377 (806)
T 1ypw_A 312 KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHH
T ss_pred ccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHH
Confidence 344444556678999999999999877889999999999999999999999999999999998765
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.94 E-value=8.6e-10 Score=75.65 Aligned_cols=61 Identities=31% Similarity=0.490 Sum_probs=49.5
Q ss_pred CCCcchhHHHHHHHHHHhhCCC--CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 9 NDSTGVKDRVVNQLLTELDGVE--GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 9 ~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+....+++++||..|++.. ...+++||+|||+++.||++++| ||+..+++++|+.+++
T Consensus 194 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 194 DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR 256 (357)
T ss_dssp ----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence 3344556788999999999984 34579999999999999999999 9999999999998865
No 29
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.88 E-value=7.9e-10 Score=73.03 Aligned_cols=58 Identities=33% Similarity=0.539 Sum_probs=48.6
Q ss_pred cchhHHHHHHHHHHhhCCCCC---CCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 12 TGVKDRVVNQLLTELDGVEGL---EGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 12 ~~~~~~~~~~ll~~ld~~~~~---~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+...+..++||..+++.... .+++||++||+|+.+|++++| ||+..+++++|+.+++
T Consensus 134 ~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 134 HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194 (297)
T ss_dssp -CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHH
T ss_pred chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHH
Confidence 344567889999999988542 579999999999999999999 9999999999998764
No 30
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=74.93 Aligned_cols=60 Identities=33% Similarity=0.531 Sum_probs=49.3
Q ss_pred CCcchhHHHHHHHHHHhhCCCC--CCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 10 DSTGVKDRVVNQLLTELDGVEG--LEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 10 ~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+......++.++|+..|+++.. ..+++||+|||+++.||++++| ||+..|++++|+.+++
T Consensus 226 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r 287 (389)
T 3vfd_A 226 GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR 287 (389)
T ss_dssp ---CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHH
T ss_pred ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHH
Confidence 3344567889999999998854 4579999999999999999999 9999999999998875
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.59 E-value=1e-08 Score=72.31 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=41.0
Q ss_pred HHHHHHHHhh--CCCCCCCeEEEEecCCCCCCcccccCCCcccc--EEEeCCCCh
Q psy3374 18 VVNQLLTELD--GVEGLEGVYVVGATSRPDIIDPALLRPGRLGS--SVHCTMPDL 68 (72)
Q Consensus 18 ~~~~ll~~ld--~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~--~i~v~~Pd~ 68 (72)
+.++++.+|+ ++...+.++|++|||+++.+|+|+.|+||||+ .+++++|+.
T Consensus 172 ~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 172 LDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp ECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred hhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 3456777776 34445557778999999999999999999999 778888864
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.78 E-value=7.5e-06 Score=59.15 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=39.4
Q ss_pred HHHHHHHHhhCCCC-------------CCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 18 VVNQLLTELDGVEG-------------LEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 18 ~~~~ll~~ld~~~~-------------~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
..+.||..||.... ..++++|+|||.++.+|++|++ ||+ .|+++.|+.++.
T Consensus 195 ~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~ 258 (543)
T 3m6a_A 195 PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEK 258 (543)
T ss_dssp ---CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHH
T ss_pred HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHH
Confidence 45678888875421 1468999999999999999999 996 799999998764
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.50 E-value=0.0001 Score=48.00 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhCCC--------CCCCeEEEEe----cCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVE--------GLEGVYVVGA----TSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~--------~~~~v~vi~a----Tn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.+.+.|+..|++.. ...++++|++ ++.+..+++++++ ||+..|+|+.|+.++
T Consensus 143 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~ 206 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAAD 206 (310)
T ss_dssp HHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred HHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHH
Confidence 45788999998741 2246788888 6789999999998 999999999999875
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.48 E-value=0.00016 Score=48.19 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhCCCC----------------CCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 16 DRVVNQLLTELDGVEG----------------LEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~----------------~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+.|+..|+.... ..++.+|++||+...++++|++ ||+..++++.|+.++.
T Consensus 120 ~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 120 PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSEL 189 (338)
T ss_dssp HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHH
Confidence 3556677777765320 1148999999999999999999 9999999999988763
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.44 E-value=6.3e-05 Score=49.01 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHhhCCC-CCCCeEEEEecCCCCCCcc-cccCCCccccEEEeCCCCh
Q psy3374 14 VKDRVVNQLLTELDGVE-GLEGVYVVGATSRPDIIDP-ALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 14 ~~~~~~~~ll~~ld~~~-~~~~v~vi~aTn~~~~lD~-al~r~GRfd~~i~v~~Pd~ 68 (72)
....+++.|+..+++.. ...++++|+|||.++.+|+ .+.+ ||+..|+++.++.
T Consensus 146 ~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 146 FSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIAT 200 (272)
T ss_dssp CCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEE
T ss_pred HHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccH
Confidence 34567777888888764 3446899999999999998 5565 9999998876543
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.38 E-value=4.8e-05 Score=49.96 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhhCCCCCCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 15 KDRVVNQLLTELDGVEGLEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.+.|+..|+.. ..++++|++||.++ .++|+|++ ||+..|+|+.|+.++.
T Consensus 152 ~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 152 GQEAIEILLQVMENN--RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEEL 209 (309)
T ss_dssp THHHHHHHHHHHHHC--TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHH
T ss_pred cHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHH
Confidence 457888999999864 44688999998764 36799999 9999999999998763
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.17 E-value=0.00066 Score=44.65 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=32.7
Q ss_pred CeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 34 GVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 34 ~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++.+|++||++..+++++.+ ||+..+.++.|+.++.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~ 173 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEEL 173 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHH
Confidence 57899999999999999999 9999999999988653
No 38
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.10 E-value=0.0006 Score=45.39 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhCC---------CCCCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 16 DRVVNQLLTELDGV---------EGLEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 16 ~~~~~~ll~~ld~~---------~~~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+.|+..|+.- ....++++++|+|..+ .+++++++ ||+..++++.|+.++.
T Consensus 123 ~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~ 190 (331)
T 2r44_A 123 AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESE 190 (331)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHH
Confidence 35666777777642 1234688889998443 39999999 9999999999998764
No 39
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.01 E-value=0.00091 Score=44.33 Aligned_cols=49 Identities=31% Similarity=0.445 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhC----CCC-------CCCeEEEEecCCCC-CCcccccCCCccccEEEeCCCC
Q psy3374 17 RVVNQLLTELDG----VEG-------LEGVYVVGATSRPD-IIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 17 ~~~~~ll~~ld~----~~~-------~~~v~vi~aTn~~~-~lD~al~r~GRfd~~i~v~~Pd 67 (72)
...+.|+..|+. +.. ..++++|+|||..+ .++++|++ ||+.+++++.|+
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~ 219 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPR 219 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCC
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCC
Confidence 455667776663 111 12689999999745 89999999 999999999994
No 40
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=7.3e-05 Score=44.78 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=31.1
Q ss_pred CCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 33 EGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 33 ~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.++.+|++||.++ .+|+++.+ ||+ .|+++.|+.+++
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~ 190 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDT 190 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHH
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHH
Confidence 4578889999887 89999999 998 699999998865
No 41
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.72 E-value=0.0012 Score=48.94 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=32.5
Q ss_pred CCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.+|+|||..+ .+|+++.| || ..|+|+.|+.+++
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~ 330 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDES 330 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHH
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHH
Confidence 45689999999999 79999999 99 5699999998764
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.69 E-value=0.0012 Score=46.71 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.2
Q ss_pred CCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 32 LEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 32 ~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.+.+|++||.++ .+|+++.| ||. .|.|+.|+.++.
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~ 330 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDES 330 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHH
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHH
Confidence 44689999999998 79999999 998 599999998763
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.58 E-value=7.2e-05 Score=44.96 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCC
Q psy3374 33 EGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 33 ~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd 67 (72)
.++.+|++||.++ .+|+++++ ||+. |+++.|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 4678999999876 69999999 9995 9999996
No 44
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0036 Score=41.56 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCC---CCCcccccCCCcccc-EEEeCCCChhhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRP---DIIDPALLRPGRLGS-SVHCTMPDLAFA 71 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~---~~lD~al~r~GRfd~-~i~v~~Pd~~~~ 71 (72)
...+..++.+++......++.+|++||.+ +.+++++.+ ||.. .|+++.|+.++.
T Consensus 149 ~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~ 206 (387)
T 2v1u_A 149 QDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQL 206 (387)
T ss_dssp HHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHH
T ss_pred ChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHH
Confidence 35566666666654324578999999998 789999999 9986 899999987653
No 45
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.49 E-value=0.0025 Score=46.61 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCC-----------CCCCeEEEEecCCCC-------------CCcccccCCCcccc-EEEeCCCChh
Q psy3374 17 RVVNQLLTELDGVE-----------GLEGVYVVGATSRPD-------------IIDPALLRPGRLGS-SVHCTMPDLA 69 (72)
Q Consensus 17 ~~~~~ll~~ld~~~-----------~~~~v~vi~aTn~~~-------------~lD~al~r~GRfd~-~i~v~~Pd~~ 69 (72)
...+.|+..|+.-. ...++.||||||.+. .|++|+++ |||. .+..+.|+.+
T Consensus 406 ~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e 481 (595)
T 3f9v_A 406 EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ 481 (595)
T ss_dssp HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH
T ss_pred hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH
Confidence 45677788877421 123688999999987 99999999 9995 6666777654
No 46
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.47 E-value=0.0028 Score=46.99 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhhCCC---------CCCCeEEEEecCCCCC------------CcccccCCCccccEEEeCCCChhh
Q psy3374 15 KDRVVNQLLTELDGVE---------GLEGVYVVGATSRPDI------------IDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~---------~~~~v~vi~aTn~~~~------------lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.+.|++.|+.-. ...++++|+|||.+.. +.|+++. |||..|.|+.|+.+.
T Consensus 592 ~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~ 666 (758)
T 3pxi_A 592 HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKH 666 (758)
T ss_dssp CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHH
T ss_pred CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHH
Confidence 4577888888888631 2236899999998665 7888888 999999999998865
No 47
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.45 E-value=0.0037 Score=37.96 Aligned_cols=50 Identities=6% Similarity=-0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.|+..++.. ..++.+|++||.++.+++++.+ ||. .++++.|+.++.
T Consensus 117 ~~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~ 166 (226)
T 2chg_A 117 DAQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAM 166 (226)
T ss_dssp HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHH
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHH
Confidence 3455666666653 3467888999999999999999 997 899998887653
No 48
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.42 E-value=0.0012 Score=43.21 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhCCC--C-------CCCeEEEEecCC--------------------------CCCCcccccCCCccccE
Q psy3374 16 DRVVNQLLTELDGVE--G-------LEGVYVVGATSR--------------------------PDIIDPALLRPGRLGSS 60 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~--~-------~~~v~vi~aTn~--------------------------~~~lD~al~r~GRfd~~ 60 (72)
..+.+.|+..|+.-. . -.++++|+|||. ...++++|+. ||+..
T Consensus 133 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~ 210 (311)
T 4fcw_A 133 PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEI 210 (311)
T ss_dssp HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEE
T ss_pred HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeE
Confidence 356778888887541 1 126789999999 5578899998 99999
Q ss_pred EEeCCCChhh
Q psy3374 61 VHCTMPDLAF 70 (72)
Q Consensus 61 i~v~~Pd~~~ 70 (72)
+.+..|+.+.
T Consensus 211 ~~~~p~~~~~ 220 (311)
T 4fcw_A 211 VVFRPLTKEQ 220 (311)
T ss_dssp EECCCCCHHH
T ss_pred EEeCCCCHHH
Confidence 9999998765
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.29 E-value=0.0017 Score=43.01 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.|+..++.. ..++.+|++||.+..+++++++ ||. .++|+.|+.++
T Consensus 120 ~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e 169 (324)
T 3u61_B 120 AESQRHLRSFMEAY--SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDED 169 (324)
T ss_dssp HHHHHHHHHHHHHH--GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHH
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHH
Confidence 34556677777754 2357888899999999999999 995 79999999664
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.26 E-value=0.0028 Score=46.75 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhhCCC---------CCCCeEEEEecCCCC-------------------------CCcccccCCCccccE
Q psy3374 15 KDRVVNQLLTELDGVE---------GLEGVYVVGATSRPD-------------------------IIDPALLRPGRLGSS 60 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~---------~~~~v~vi~aTn~~~-------------------------~lD~al~r~GRfd~~ 60 (72)
...+.+.|++.||.-. ...++++|+|||.+. .++|+++. |||..
T Consensus 570 ~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~ 647 (758)
T 1r6b_X 570 HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNI 647 (758)
T ss_dssp CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEE
T ss_pred CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcc
Confidence 3568888999998531 014688999999865 67889998 99999
Q ss_pred EEeCCCChhh
Q psy3374 61 VHCTMPDLAF 70 (72)
Q Consensus 61 i~v~~Pd~~~ 70 (72)
|.|+.|+.+.
T Consensus 648 i~~~~l~~~~ 657 (758)
T 1r6b_X 648 IWFDHLSTDV 657 (758)
T ss_dssp EECCCCCHHH
T ss_pred eeeCCCCHHH
Confidence 9999999865
No 51
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.19 E-value=0.0072 Score=50.94 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=31.7
Q ss_pred CeEEEEecCCC-----CCCcccccCCCccccEEEeCCCChhhh
Q psy3374 34 GVYVVGATSRP-----DIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 34 ~v~vi~aTn~~-----~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
++.+|||||.| ..||++++| || ..|+++.|+.++.
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l 1423 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSL 1423 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHH
Confidence 58999999999 489999999 99 8899999998763
No 52
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.04 E-value=0.01 Score=39.88 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.- ..++++|.+||.++.+.+++++ |+ ..++++.|+.++
T Consensus 122 ~~a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~ 171 (334)
T 1a5t_A 122 DAAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQY 171 (334)
T ss_dssp HHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHH
T ss_pred HHHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHH
Confidence 35678899988853 4468888889999999999999 88 479999998765
No 53
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.00 E-value=0.013 Score=35.78 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
....+.|+..++.. ..++.+|.+||.+..+++++.+ |+ ..++++.|+.++.
T Consensus 140 ~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~ 190 (250)
T 1njg_A 140 RHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQI 190 (250)
T ss_dssp HHHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHH
T ss_pred HHHHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHH
Confidence 35667788888754 3468899999999999999998 76 6899998887653
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.92 E-value=0.0051 Score=45.39 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=31.3
Q ss_pred CCCCeEEEEecCCCC-----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 31 GLEGVYVVGATSRPD-----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 31 ~~~~v~vi~aTn~~~-----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...++.+|++||.++ .+|++|.| ||+ .|+|+.|+.+++
T Consensus 312 ~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~ 354 (758)
T 1r6b_X 312 SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEET 354 (758)
T ss_dssp SSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHH
T ss_pred hCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHH
Confidence 345688999999753 68999999 998 799999998764
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.65 E-value=0.015 Score=38.77 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCeEEEEecCCC---CCCcccccCCCccccEEEeCCCChhhh
Q psy3374 33 EGVYVVGATSRP---DIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 33 ~~v~vi~aTn~~---~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.++.+|++||.+ +.+++++.+ ||...|+++.|+.++.
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQL 202 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHH
Confidence 578999999988 789999999 9988999999987753
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.58 E-value=0.014 Score=38.91 Aligned_cols=50 Identities=22% Similarity=0.109 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEec-----------CCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGAT-----------SRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aT-----------n~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.|+..++... ..++++++. |.+..+++++++ ||.. |+++.|+.++.
T Consensus 204 ~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~ 264 (368)
T 3uk6_A 204 ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDT 264 (368)
T ss_dssp HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHH
T ss_pred HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHH
Confidence 44556666665432 246555554 458899999999 9977 89999988753
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.46 E-value=0.0049 Score=46.41 Aligned_cols=46 Identities=30% Similarity=0.337 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCCCCCCeEEEEecCCCC----CCcccccCCCccccEEEeCCCChhhh
Q psy3374 19 VNQLLTELDGVEGLEGVYVVGATSRPD----IIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 19 ~~~ll~~ld~~~~~~~v~vi~aTn~~~----~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+.|...++ ...+.+|++||.++ .+|+++.| ||+. |+|+.|+.+++
T Consensus 288 ~~~L~~~l~----~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~ 337 (854)
T 1qvr_A 288 GNMLKPALA----RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEET 337 (854)
T ss_dssp ----HHHHH----TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHH
T ss_pred HHHHHHHHh----CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHH
Confidence 344444444 24578999999875 58999999 9986 99999998754
No 58
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.25 E-value=0.017 Score=41.66 Aligned_cols=53 Identities=19% Similarity=0.110 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhhCC--------CCCCCeEEEEecCCCCC---CcccccCCCccccEEEeCCCChh
Q psy3374 15 KDRVVNQLLTELDGV--------EGLEGVYVVGATSRPDI---IDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~--------~~~~~v~vi~aTn~~~~---lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
...+.+.|+..|+.- ...+..++|+|||.+.. ..+++++ ||..+|+++.|+.+
T Consensus 122 ~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ 185 (500)
T 3nbx_X 122 GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDK 185 (500)
T ss_dssp CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCH
T ss_pred cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhh
Confidence 346778888888642 11112356778885332 3359999 99999999999873
No 59
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.98 E-value=0.066 Score=36.07 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=19.1
Q ss_pred CcccccCCCccccEEEeCCCChhh
Q psy3374 47 IDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 47 lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
+.|+|+. |||..+.+..|+.+.
T Consensus 239 ~~~~l~~--R~~~~~~~~pl~~~~ 260 (363)
T 3hws_A 239 LIPEFIG--RLPVVATLNELSEEA 260 (363)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHH
T ss_pred CCHHHhc--ccCeeeecCCCCHHH
Confidence 6788887 999999999998775
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.033 Score=36.72 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCC---CCCcccccCCCccc-cEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRP---DIIDPALLRPGRLG-SSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~---~~lD~al~r~GRfd-~~i~v~~Pd~~~~ 71 (72)
..+..|+..++.. ...++.+|++||.+ +.+++.+.+ ||. +.|+++.++.++.
T Consensus 147 ~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~ 202 (386)
T 2qby_A 147 DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEEL 202 (386)
T ss_dssp THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHH
T ss_pred HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHH
Confidence 4566777777765 34478899999987 578888888 886 4899999987753
No 61
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.049 Score=36.06 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.|+..|+... .+..+|.+||.++.+.+++.+ |+ ..+.++.|+.++
T Consensus 149 ~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~ 197 (354)
T 1sxj_E 149 DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSE 197 (354)
T ss_dssp HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHH
Confidence 44566777777653 357788889999999999999 98 889999998765
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.81 E-value=0.016 Score=39.28 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCC-------------------CCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCC
Q psy3374 17 RVVNQLLTELDGVE-------------------GLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPD 67 (72)
Q Consensus 17 ~~~~~ll~~ld~~~-------------------~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd 67 (72)
.+.+.|+..|++.. ...++++|+||| .+.+|+++.| ||+ ...+++|.
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~-~~~~g~~~ 231 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTT-QNVLGFTQ 231 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHHTTT--SCS-SCCCSCCC
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--Hhc-ccccCCCc
Confidence 37888999998631 114578888888 7899999999 998 55666654
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.60 E-value=0.021 Score=36.99 Aligned_cols=49 Identities=6% Similarity=-0.085 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.|+..++.. ..++.+|.+||.+..+++++.+ ||. .++++.|+.++
T Consensus 117 ~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~ 165 (319)
T 2chq_A 117 DAQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEA 165 (319)
T ss_dssp HHHHTTGGGTSSS--SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHH
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHH
Confidence 3345556555543 3468889999999999999999 886 89999888765
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.49 E-value=0.011 Score=36.57 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCCCCCCe-EEEEecCCCC---CCcccccCCCccc--cEEEeCCCChhhh
Q psy3374 19 VNQLLTELDGVEGLEGV-YVVGATSRPD---IIDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 19 ~~~ll~~ld~~~~~~~v-~vi~aTn~~~---~lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
...|+..++.......+ +|+++++.+. .+++++.+ ||. ..++++.|+.+++
T Consensus 123 ~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~ 179 (242)
T 3bos_A 123 EEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEK 179 (242)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHH
Confidence 34455555544333344 6666665554 56688888 886 8999999998764
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.37 E-value=0.074 Score=35.22 Aligned_cols=50 Identities=26% Similarity=0.273 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.|+..++.. ..++++|.+||.+..+++++.+ |+ ..++++.|+.++
T Consensus 133 ~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~ 182 (373)
T 1jr3_A 133 RHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQ 182 (373)
T ss_dssp HHHHHHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHH
T ss_pred HHHHHHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHH
Confidence 35567788888754 3468888889999999999998 87 789999988765
No 66
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.36 E-value=0.011 Score=41.52 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCCCCeEEEEecCCCCC---CcccccCCCccc--cEEEeCCCChhhh
Q psy3374 19 VNQLLTELDGVEGLEGVYVVGATSRPDI---IDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 19 ~~~ll~~ld~~~~~~~v~vi~aTn~~~~---lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
...|+..++.+...+..+|+++.+.+.. +++++++ ||+ ..++++.|+.+++
T Consensus 213 q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r 268 (440)
T 2z4s_A 213 QTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETR 268 (440)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHH
Confidence 3345555554434445677777666665 8899999 997 7899999998764
No 67
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.31 E-value=0.015 Score=38.56 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHHHhhCCCCCCCeEEEEecCCCC---CCcccccCCCccc--cEEEeCCCChhhh
Q psy3374 20 NQLLTELDGVEGLEGVYVVGATSRPD---IIDPALLRPGRLG--SSVHCTMPDLAFA 71 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v~vi~aTn~~~---~lD~al~r~GRfd--~~i~v~~Pd~~~~ 71 (72)
..|+..++.+...+..+|+++++.+. .+++++++ ||+ ..++++. +.+++
T Consensus 118 ~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~ 171 (324)
T 1l8q_A 118 IEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTR 171 (324)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHH
Confidence 34444444433344578888888877 68999999 997 5778877 76653
No 68
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.038 Score=37.16 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.||..|+.- .+++++|.+||.++.|.++++. | .++++.|+.++
T Consensus 96 ~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~ 143 (305)
T 2gno_A 96 QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKE 143 (305)
T ss_dssp HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHH
T ss_pred HHHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHH
Confidence 45678899999854 4467777778889999999999 8 88888887664
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.22 E-value=0.045 Score=35.51 Aligned_cols=49 Identities=8% Similarity=-0.073 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.|+..|+.. ..++.+|.+||.++.+++++.+ ||. .++++.|+.++
T Consensus 125 ~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~ 173 (327)
T 1iqp_A 125 DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDED 173 (327)
T ss_dssp HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHH
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHH
Confidence 4566777777753 3457788899999999999998 886 78888888654
No 70
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.08 E-value=0.0075 Score=42.07 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 20 NQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 20 ~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
..+.+.+||. +.|+.+||+++.+ +++++|||+|..++...
T Consensus 245 ~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 245 DNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 4566667763 5578889999999 79999999998877754
No 71
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.044 Score=36.09 Aligned_cols=49 Identities=10% Similarity=-0.023 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.|+..|+.... +..+|.+||.+..+++++.+ ||. .+.++.|+.++
T Consensus 148 ~~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~ 196 (353)
T 1sxj_D 148 DAQSALRRTMETYSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASN 196 (353)
T ss_dssp HHHHHHHHHHHHTTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHH
T ss_pred HHHHHHHHHHHhcCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHH
Confidence 455678888876533 45666788999999999999 996 78888887654
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.76 E-value=0.051 Score=35.16 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
...+.|+..++.. ..++.+|.+||.+..+++++.+ |+. .++++.|+.++.
T Consensus 122 ~~~~~L~~~le~~--~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~ 171 (323)
T 1sxj_B 122 GAQQALRRTMELY--SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDV 171 (323)
T ss_dssp HHHHTTHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHH
T ss_pred HHHHHHHHHHhcc--CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHH
Confidence 3455667777643 3457788889999999999999 875 899999987653
No 73
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.08 E-value=0.065 Score=35.57 Aligned_cols=53 Identities=8% Similarity=0.059 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhCCCC--CCCeEEEEecCCC---CCCcccccCCCcccc-EEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEG--LEGVYVVGATSRP---DIIDPALLRPGRLGS-SVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~--~~~v~vi~aTn~~---~~lD~al~r~GRfd~-~i~v~~Pd~~~ 70 (72)
...+..|+..++.... ..++.+|++||.+ +.+++.+.+ ||.. .|+++.++.++
T Consensus 139 ~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~ 197 (389)
T 1fnn_A 139 PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQ 197 (389)
T ss_dssp HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHH
T ss_pred hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHH
Confidence 3556667777765422 1478899999988 778888888 8886 89999888764
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.47 E-value=0.12 Score=38.96 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhhCCC---------CCCCeEEEEecCCC--------------------------CCCcccccCCCcccc
Q psy3374 15 KDRVVNQLLTELDGVE---------GLEGVYVVGATSRP--------------------------DIIDPALLRPGRLGS 59 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~~---------~~~~v~vi~aTn~~--------------------------~~lD~al~r~GRfd~ 59 (72)
...+.+.|++.|+.-. ...++++|+|||.. ..+.|+|+. |||.
T Consensus 673 ~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~ 750 (854)
T 1qvr_A 673 HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDE 750 (854)
T ss_dssp CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSB
T ss_pred CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCe
Confidence 4578889999998531 11368899999972 345677777 9999
Q ss_pred EEEeCCCChhh
Q psy3374 60 SVHCTMPDLAF 70 (72)
Q Consensus 60 ~i~v~~Pd~~~ 70 (72)
.+.+..|+.+.
T Consensus 751 ~i~~~pl~~ed 761 (854)
T 1qvr_A 751 IVVFRPLTKEQ 761 (854)
T ss_dssp CCBCCCCCHHH
T ss_pred EEeCCCCCHHH
Confidence 99998888654
No 75
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.34 E-value=0.24 Score=33.76 Aligned_cols=51 Identities=4% Similarity=-0.006 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCC----CcccccCCCccc-cEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDI----IDPALLRPGRLG-SSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~----lD~al~r~GRfd-~~i~v~~Pd~~~ 70 (72)
+.++..|+.+... ...+++||+.+|..+. |++++.. ||. ..|.|+..+.++
T Consensus 147 q~~L~~l~~~~~~--~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 147 EKILQYFEKWISS--KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNE 202 (318)
T ss_dssp THHHHHHHHHHHC--SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHH
T ss_pred chHHHHHHhcccc--cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHH
Confidence 3556666665432 3446999999999875 4556667 887 689999888765
No 76
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.57 E-value=0.11 Score=36.70 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHhhCCCCCCCeEEEEec--CCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 19 VNQLLTELDGVEGLEGVYVVGAT--SRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 19 ~~~ll~~ld~~~~~~~v~vi~aT--n~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.+.||..|+. ..+++|++| |....++++|++ ||. .+.++.|+.++
T Consensus 123 q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~ed 169 (447)
T 3pvs_A 123 QDAFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTED 169 (447)
T ss_dssp --CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHH
T ss_pred HHHHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHH
Confidence 3445555553 346677766 555689999999 986 67788888765
No 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.54 E-value=0.15 Score=34.19 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.2
Q ss_pred CeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 34 GVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 34 ~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.+.++++||++..|++++++ ||...+.++.|+.++
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKE 184 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHH
Confidence 46778899999999999999 999889999998865
No 78
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.70 E-value=0.46 Score=33.18 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEe---------cC---CCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGA---------TS---RPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~a---------Tn---~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
....+.|+..|+.-.. .+++++| |+ .|..|+|.++. ||-. +.++.++.++
T Consensus 309 ~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e 370 (456)
T 2c9o_A 309 IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQE 370 (456)
T ss_dssp HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHH
T ss_pred HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHH
Confidence 4678888888885433 3666666 43 28889999999 9966 6898888765
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.49 E-value=0.64 Score=33.11 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCCC--------CCCCeEEEEec----CCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVE--------GLEGVYVVGAT----SRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~--------~~~~v~vi~aT----n~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.+-..||..|++.. ...+|++|+|. +.|.++-|.|+. ||+..|+++..+.++
T Consensus 277 gvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e 340 (444)
T 1g41_A 277 GVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAAD 340 (444)
T ss_dssp HHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred HHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHH
Confidence 46678999999851 23468888886 345556678888 999999998887764
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.02 E-value=0.43 Score=31.65 Aligned_cols=51 Identities=27% Similarity=0.260 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCC---------CCCCeEEEEecCCC-------CCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVE---------GLEGVYVVGATSRP-------DIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~---------~~~~v~vi~aTn~~-------~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.....|+..|+.-. ...++.+|+|||.+ ..+++.|.. ||. .+.+.+|...+
T Consensus 111 ~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~e 177 (304)
T 1ojl_A 111 LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQ 177 (304)
T ss_dssp HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGG
T ss_pred HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHH
Confidence 45566777777532 12358899999986 123444444 554 56666666543
No 81
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.57 E-value=0.73 Score=30.54 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...+.|+..|+... ..+.++.+||.+..+.+++++ |+. .+.+..++.++
T Consensus 125 ~~~~~L~~~le~~~--~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~ 173 (340)
T 1sxj_C 125 AAQNALRRVIERYT--KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEA 173 (340)
T ss_dssp HHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHH
T ss_pred HHHHHHHHHHhcCC--CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHH
Confidence 34556666666542 346677788999999999999 885 67777666543
No 82
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.86 E-value=0.52 Score=29.99 Aligned_cols=50 Identities=26% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCC---------CCCCeEEEEecCCC-------CCCcccccCCCccccEEEeCCCChh
Q psy3374 17 RVVNQLLTELDGVE---------GLEGVYVVGATSRP-------DIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 17 ~~~~~ll~~ld~~~---------~~~~v~vi~aTn~~-------~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
.....|+..|+.-. ...++.+|+|||.+ ..++++|.. ||+. +.+.+|+..
T Consensus 115 ~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~ 180 (265)
T 2bjv_A 115 MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLR 180 (265)
T ss_dssp HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGG
T ss_pred HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChh
Confidence 45566777776420 12357899999985 246788888 8864 456666554
No 83
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.32 E-value=0.43 Score=30.18 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCCh
Q psy3374 22 LLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDL 68 (72)
Q Consensus 22 ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~ 68 (72)
+++.+..- ...++-+|.+|+.++.||.++++ |++.++++..|..
T Consensus 112 ll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 112 NVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp HHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred HHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 55666543 23356677778889999999998 9999999987654
No 84
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=83.64 E-value=0.45 Score=34.75 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhhCC-------CCCCCeEEEEecCCCC-----------CCcccccCCCccccE-EEeCCCChh
Q psy3374 15 KDRVVNQLLTELDGV-------EGLEGVYVVGATSRPD-----------IIDPALLRPGRLGSS-VHCTMPDLA 69 (72)
Q Consensus 15 ~~~~~~~ll~~ld~~-------~~~~~v~vi~aTn~~~-----------~lD~al~r~GRfd~~-i~v~~Pd~~ 69 (72)
.....+.|+..|+.= .-..++.||||+|... .|+++++. |||.. +.++.||.+
T Consensus 313 ~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 313 PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 345667777777632 1123689999999875 88999999 99974 446777765
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.58 E-value=0.32 Score=35.23 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.7
Q ss_pred CeEEEEecCCC--CCCcccccCCCccc
Q psy3374 34 GVYVVGATSRP--DIIDPALLRPGRLG 58 (72)
Q Consensus 34 ~v~vi~aTn~~--~~lD~al~r~GRfd 58 (72)
++.||+|||+. +.++++|++ ||+
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~ 276 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIR 276 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--Hhh
Confidence 57899999987 789999999 997
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.23 E-value=0.84 Score=30.41 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCC-CC--CCeEEEEecCCCC---CCc---ccccCCCccccEEEeCCCChhh
Q psy3374 17 RVVNQLLTELDGVE-GL--EGVYVVGATSRPD---IID---PALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 17 ~~~~~ll~~ld~~~-~~--~~v~vi~aTn~~~---~lD---~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
..+..++..++... .. .++.+|++||.++ .++ +.+.+ ||...++++.++.++
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 159 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRE 219 (412)
T ss_dssp HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHH
Confidence 44555555555442 12 5788999998765 344 66666 666668888887765
No 87
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.07 E-value=5.5 Score=28.14 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCCCChhhh
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
.+++|+..++.. ...+++++++.....+++ +. |+...|.|+.|+.++.
T Consensus 167 ~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~ 214 (516)
T 1sxj_A 167 GVGQLAQFCRKT--STPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSI 214 (516)
T ss_dssp HHHHHHHHHHHC--SSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHH
T ss_pred HHHHHHHHHHhc--CCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHH
Confidence 345666666642 334666666655555554 43 5567899999998763
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.37 E-value=0.78 Score=37.72 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccc
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPAL 51 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al 51 (72)
....|+++|+|.+|+++....+|+|| +||+..+=..++
T Consensus 1188 ~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~~~ 1225 (1706)
T 3cmw_A 1188 GLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIGVM 1225 (1706)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTTCC
T ss_pred cHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccchhe
Confidence 56678999999999998777788888 788864433333
No 89
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=70.60 E-value=0.79 Score=31.67 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccc
Q psy3374 16 DRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPAL 51 (72)
Q Consensus 16 ~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al 51 (72)
.+.+.++|..|+++....++.++.+|| +...|+++
T Consensus 208 ~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 208 SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 456778888887774445678889999 77888885
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.08 E-value=3.7 Score=35.92 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCeEEEEecCCC-----CCCcccccCCCccccEEEeCCCChhh
Q psy3374 33 EGVYVVGATSRP-----DIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 33 ~~v~vi~aTn~~-----~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.++.+|||.|.| ..|+++++| ||-. ++++.|+.+.
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~es 1460 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSS 1460 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHH
Confidence 358899999987 579999999 9955 9999999764
No 91
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=67.20 E-value=2.5 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=15.6
Q ss_pred HHHHHHHHhhCCCCCCCeEEEEecCCC
Q psy3374 18 VVNQLLTELDGVEGLEGVYVVGATSRP 44 (72)
Q Consensus 18 ~~~~ll~~ld~~~~~~~v~vi~aTn~~ 44 (72)
....|+..|+.-. ..++.+|+|||.+
T Consensus 91 ~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 3344555555432 3457888999975
No 92
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=49.83 E-value=47 Score=21.07 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=14.4
Q ss_pred CCccccEEEeCCCChh
Q psy3374 54 PGRLGSSVHCTMPDLA 69 (72)
Q Consensus 54 ~GRfd~~i~v~~Pd~~ 69 (72)
.|+.+..|++|.||++
T Consensus 77 ~g~i~lWIevG~Pdek 92 (183)
T 3c0u_A 77 HLGIDLWIELGLPDER 92 (183)
T ss_dssp TSCEEEEEEESCCCHH
T ss_pred CCCEEEEEEcCCCCHH
Confidence 5699999999999986
No 93
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=47.96 E-value=9.2 Score=24.36 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccC---CCccccEEEeCCCChh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLR---PGRLGSSVHCTMPDLA 69 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r---~GRfd~~i~v~~Pd~~ 69 (72)
+...|+.--+|...=...+ + +. .+-.--+.=.|+|+. .|+.+..|++|.||++
T Consensus 35 ET~eRmM~RlLAfal~a~e--~-L~-FtkGLs~~dEPdlW~k~l~g~i~lWIevG~Pde~ 90 (182)
T 2g3w_A 35 ETDERLMVRLLAFALFADD--R-LE-FGRGLSNDDEPDLWRRDYTGDPDLWIDLGQPDES 90 (182)
T ss_dssp CCHHHHHHHHHHHHHTCCS--S-CE-ECCTTSCSSCCSEEEECTTSCEEEEEEESCCCHH
T ss_pred ccHHHHHHHHHHHHhcccc--c-cc-ccCCCCCCCCchhhhcCCCCCEEEEEEcCCCCHH
Confidence 4455666655555433222 1 11 112222223344543 5799999999999986
No 94
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=47.81 E-value=9.3 Score=24.30 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccC---CCccccEEEeCCCChh
Q psy3374 13 GVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLR---PGRLGSSVHCTMPDLA 69 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r---~GRfd~~i~v~~Pd~~ 69 (72)
+...|+.--+|...=...+ + +.+ +-.--+.=.|+|+. .|+.+..|++|.||++
T Consensus 35 ET~eRmM~RlLAfal~a~e--~-L~F-tkGLs~~dEPdlW~k~l~g~i~lWIevG~Pde~ 90 (180)
T 2ot9_A 35 ETEERMTVRLLAYAFWYNE--Q-LAF-GRGLSDVDEPALWEKSLDDRVLHWIEVGQPDAD 90 (180)
T ss_dssp SCHHHHHHHHHHHHHTCCT--T-EEE-CCGGGCTTSCSEEEECTTSCEEEEEEESCCCHH
T ss_pred ccHHHHHHHHHHHHhcccc--c-ccc-cCCCCCCCCchhhhcCCCCCEEEEEEcCCCCHH
Confidence 4455666665555433322 1 111 11122222344433 5799999999999986
No 95
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=46.34 E-value=20 Score=26.39 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=35.0
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCCC--CCcccccCCCccccEEEeCCCChhh
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRPD--IIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~~--~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
+.+..+-.....-+|.+|.+|.+|. .|+..++. -|..+|.+.+.+...
T Consensus 365 ~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 365 ELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp HHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred HHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 3344444444456899999999998 78888777 788888888876543
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=38.39 E-value=23 Score=30.73 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=29.0
Q ss_pred CeEEEEecC----CCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 34 GVYVVGATS----RPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 34 ~v~vi~aTn----~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...|++|.| .-..|++++++ || +.|.+..||.+.
T Consensus 747 ~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 747 HTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp TCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred CceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 466888888 67789999999 99 889999999764
No 97
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=31.72 E-value=32 Score=19.57 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCC
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRP 44 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~ 44 (72)
.....|+..|... ..++.+|+|||.+
T Consensus 91 ~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 91 EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 3455677777543 3356788999974
No 98
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=30.96 E-value=52 Score=22.34 Aligned_cols=29 Identities=7% Similarity=0.229 Sum_probs=24.3
Q ss_pred EEEEecCCCCC-CcccccCCCccccEEEeCCC
Q psy3374 36 YVVGATSRPDI-IDPALLRPGRLGSSVHCTMP 66 (72)
Q Consensus 36 ~vi~aTn~~~~-lD~al~r~GRfd~~i~v~~P 66 (72)
+||+||..|+- ++...+++|. ..|.++.|
T Consensus 248 IVIsAtg~p~~vI~~e~vk~Ga--vVIDVgi~ 277 (320)
T 1edz_A 248 VVITGVPSENYKFPTEYIKEGA--VCINFACT 277 (320)
T ss_dssp EEEECCCCTTCCBCTTTSCTTE--EEEECSSS
T ss_pred EEEECCCCCcceeCHHHcCCCe--EEEEcCCC
Confidence 78899999998 9999999984 57777776
No 99
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=28.01 E-value=36 Score=24.55 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCCCCeEEEEecCCCC--CCcccccCCCccccEEEeCCCChhh
Q psy3374 21 QLLTELDGVEGLEGVYVVGATSRPD--IIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 21 ~ll~~ld~~~~~~~v~vi~aTn~~~--~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
.++..|-.....-++.+|.+|.+|. .++..++. -|..+|.+.+.+...
T Consensus 319 ~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 319 ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 368 (512)
T ss_dssp HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHH
T ss_pred HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHH
Confidence 3344443333344788999999998 57777766 788888888876543
No 100
>3enc_A Protein PCC1; dimerization domain, keops, telomere, unknown function; 2.63A {Pyrococcus furiosus} PDB: 3eno_C
Probab=27.15 E-value=25 Score=19.64 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=15.5
Q ss_pred CcccccCCCccccEEEeCCCChhhh
Q psy3374 47 IDPALLRPGRLGSSVHCTMPDLAFA 71 (72)
Q Consensus 47 lD~al~r~GRfd~~i~v~~Pd~~~~ 71 (72)
+||-=+. +|...+.|.+|+.+.|
T Consensus 3 ~~~~~~~--~i~a~l~~e~~~~e~A 25 (87)
T 3enc_A 3 MDPMKAK--RVQAKIEMEFPSEDVA 25 (87)
T ss_dssp ----CCC--CEEEEEEEECSCHHHH
T ss_pred CCccccc--ceEEEEEEEeCCHHHH
Confidence 4554455 8999999999997765
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.88 E-value=69 Score=28.53 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=29.1
Q ss_pred CCeEEEEecC----CCCCCcccccCCCccccEEEeCCCChhh
Q psy3374 33 EGVYVVGATS----RPDIIDPALLRPGRLGSSVHCTMPDLAF 70 (72)
Q Consensus 33 ~~v~vi~aTn----~~~~lD~al~r~GRfd~~i~v~~Pd~~~ 70 (72)
...-|+.|.| .-..|+++|+. || +-|.+..||.+.
T Consensus 706 ~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 706 QDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp TTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred CCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 3577888998 46799999999 99 779999999763
No 102
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=25.95 E-value=63 Score=19.88 Aligned_cols=43 Identities=12% Similarity=0.256 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
.-++++|..+.. ...+-+||||- ++-++++++. |.|..+-++.
T Consensus 81 ~~fA~~l~~~~~-~G~~i~FvIGG---a~Gl~~~v~~--rAd~~lSlS~ 123 (163)
T 1o6d_A 81 EEFADFLKDLEM-KGKDITILIGG---PYGLNEEIFA--KAHRVFSLSK 123 (163)
T ss_dssp HHHHHHHHHHHH-HTCCEEEEECC---TTCCCGGGGG--GCSEEEECCS
T ss_pred HHHHHHHHHHHh-cCCeEEEEEEC---CCCCCHHHHH--hhCceEEccC
Confidence 344445544421 11234688876 7889999999 9999988764
No 103
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=24.29 E-value=52 Score=20.32 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCCCCCCcccccCCCccccEEEeCC
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTM 65 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~~~~lD~al~r~GRfd~~i~v~~ 65 (72)
.-++++|..+..-..++-+||||. ++-++++++. |.|..+-++.
T Consensus 86 ~~fA~~l~~~~~~G~~~i~FvIGG---a~Gl~~~v~~--rA~~~lSlS~ 129 (167)
T 1to0_A 86 EELADTIDKLATYGKSKVTFVIGG---SLGLSDTVMK--RADEKLSFSK 129 (167)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECC---SSCCCHHHHH--HCSEEEESCS
T ss_pred HHHHHHHHHHHhcCCceEEEEEEC---CCCCCHHHHH--hhCcEEEccC
Confidence 344555554432111234688876 7889999999 9999888764
No 104
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=23.49 E-value=71 Score=19.47 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHhhCC-----CCCCCeEEEEecC
Q psy3374 13 GVKDRVVNQLLTELDGV-----EGLEGVYVVGATS 42 (72)
Q Consensus 13 ~~~~~~~~~ll~~ld~~-----~~~~~v~vi~aTn 42 (72)
+..++.+.++++..+|+ ...++|.++..++
T Consensus 22 ~~Lq~~L~~ll~rv~Gl~aI~ItDrDGVpi~kv~~ 56 (143)
T 3cpt_A 22 DDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKVAN 56 (143)
T ss_dssp CHHHHHHHHHGGGSTTEEEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCCCcEEEEecC
Confidence 45677888889999996 4567787777775
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=21.41 E-value=20 Score=20.97 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=15.5
Q ss_pred EEEEecCCCCCCc--ccccCCCccccEEEeCC
Q psy3374 36 YVVGATSRPDIID--PALLRPGRLGSSVHCTM 65 (72)
Q Consensus 36 ~vi~aTn~~~~lD--~al~r~GRfd~~i~v~~ 65 (72)
+++++...|+.+. +.+.. ||..-..+.+
T Consensus 118 iiits~~~p~~l~~~~~L~S--Rl~~g~~~~l 147 (149)
T 2kjq_A 118 LLLGSEYTPQQLVIREDLRT--RMAYCLVYEV 147 (149)
T ss_dssp EEEEESSCTTTSSCCHHHHH--HGGGSEECCC
T ss_pred EEEECCCCHHHccccHHHHH--HHhcCeeEEe
Confidence 5554443565554 66776 7765554443
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=21.12 E-value=1.2e+02 Score=19.57 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCCCCeEEEEecCC-----CCCCcccccCCCccccEEEeCCCChh
Q psy3374 17 RVVNQLLTELDGVEGLEGVYVVGATSR-----PDIIDPALLRPGRLGSSVHCTMPDLA 69 (72)
Q Consensus 17 ~~~~~ll~~ld~~~~~~~v~vi~aTn~-----~~~lD~al~r~GRfd~~i~v~~Pd~~ 69 (72)
...+.|+..+..... +.++|+.+|+- ...+-+++.. |. ..+++..|+..
T Consensus 92 ~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~ 145 (343)
T 1jr3_D 92 AINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQA 145 (343)
T ss_dssp THHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTT
T ss_pred HHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHH
Confidence 456678888875432 33555555442 2356677777 55 46777776654
No 107
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=20.18 E-value=79 Score=21.15 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=22.6
Q ss_pred EEEEecCCCCCCcccccCCCccccEEEeCCC
Q psy3374 36 YVVGATSRPDIIDPALLRPGRLGSSVHCTMP 66 (72)
Q Consensus 36 ~vi~aTn~~~~lD~al~r~GRfd~~i~v~~P 66 (72)
+||+|+..|+-+....+++|- ..|.++.|
T Consensus 206 IVI~Avg~p~~I~~~~vk~Ga--vVIDVgi~ 234 (281)
T 2c2x_A 206 IVVAAVGVAHLLTADMVRPGA--AVIDVGVS 234 (281)
T ss_dssp EEEECSCCTTCBCGGGSCTTC--EEEECCEE
T ss_pred EEEECCCCCcccCHHHcCCCc--EEEEccCC
Confidence 678888899999999999884 45666554
Done!