RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3374
         (72 letters)



>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 82.2 bits (203), Expect = 1e-21
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)

Query: 4   GYRRGNDSTG---VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSS 60
           G +RG    G    +++ +NQ+L E+DG EG EG+ V+ AT+RPD++DPALLRPGR    
Sbjct: 117 GRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQ 176

Query: 61  VHCTMPDLA 69
           V   +PD+ 
Sbjct: 177 VVVGLPDVR 185


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
           {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 81.0 bits (200), Expect = 2e-21
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 4   GYRRGNDSTG---VKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSS 60
           G +RG+   G    +++ +NQLL E+DG E    + V+ AT+RPDI+DPALLRPGR    
Sbjct: 114 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 173

Query: 61  VHCTMPDLA 69
           +    PD+ 
Sbjct: 174 IAIDAPDVK 182


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 72.9 bits (178), Expect = 4e-18
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query: 8   GNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHCTMP 66
             D  G  DRV+NQ+LTE+DG+   + V+++GAT+RPDIIDPA+LRPGRL   ++  +P
Sbjct: 120 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 178


>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
           161736]}
          Length = 321

 Score = 68.9 bits (168), Expect = 2e-16
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 2   ITGYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSR---PDIIDPALLRPGRLG 58
           + G   GN ++G   R    LL+++  +    G  V+ + +     D I   +    R  
Sbjct: 194 VIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSN 253

Query: 59  SSVHCTMPDLA 69
           S+      D+ 
Sbjct: 254 STSLVISTDVD 264


>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 45.4 bits (106), Expect = 4e-08
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 4   GYRRGNDSTGVKDRVVNQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRLGSSVHC 63
             +R      V+ R+V+QLLT +DG++    V V+ AT+RP+ IDPAL R GR    V  
Sbjct: 110 APKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 169

Query: 64  TMPD 67
            +PD
Sbjct: 170 GIPD 173


>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
           toxin zeta subunit {Streptococcus pyogenes [TaxId:
           1314]}
          Length = 273

 Score = 37.6 bits (86), Expect = 3e-05
 Identities = 4/38 (10%), Positives = 11/38 (28%)

Query: 20  NQLLTELDGVEGLEGVYVVGATSRPDIIDPALLRPGRL 57
               T++  +   +    +G   R + +        R 
Sbjct: 134 KGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARA 171


>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
           N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
           hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 246

 Score = 32.2 bits (72), Expect = 0.002
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 6   RRGNDSTGVKDRVVNQLLTELDGVEGLEGVYV-VGATSRPDIIDPALLRPGRLGSSVHCT 64
                     + V+  LL  L          + +G TSR D++    +      +++H  
Sbjct: 114 DYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIH-- 170

Query: 65  MPDLA 69
           +P++A
Sbjct: 171 VPNIA 175


>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
          {Bacillus subtilis [TaxId: 1423]}
          Length = 504

 Score = 25.5 bits (54), Expect = 0.63
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 34 GVYVVGATSRPDIIDPAL 51
          G  VVG+   P + +   
Sbjct: 6  GDLVVGSIGEPTLFNSLY 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.140    0.408 

Gapped
Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,467
Number of extensions: 9459
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)