Query psy3377
Match_columns 336
No_of_seqs 185 out of 1699
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:28:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0679|consensus 100.0 2.6E-68 5.5E-73 487.1 24.8 303 1-323 1-303 (426)
2 KOG0676|consensus 100.0 1E-65 2.2E-70 481.7 13.8 275 7-335 1-275 (372)
3 KOG0677|consensus 100.0 1.3E-64 2.7E-69 442.0 12.9 276 11-333 2-277 (389)
4 PTZ00452 actin; Provisional 100.0 3.4E-63 7.5E-68 476.1 21.5 274 13-335 5-278 (375)
5 PTZ00281 actin; Provisional 100.0 3.6E-62 7.8E-67 469.8 19.8 278 9-335 2-279 (376)
6 PTZ00466 actin-like protein; P 100.0 1.4E-61 3E-66 465.5 20.3 270 14-334 13-282 (380)
7 PTZ00004 actin-2; Provisional 100.0 1.4E-59 3.1E-64 452.2 22.0 279 10-335 3-281 (378)
8 PTZ00280 Actin-related protein 100.0 8.3E-56 1.8E-60 431.0 22.1 278 13-334 4-296 (414)
9 PF00022 Actin: Actin; InterP 100.0 1.1E-54 2.4E-59 420.6 25.4 280 10-329 1-282 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 5.8E-52 1.3E-56 399.1 21.0 274 14-334 2-275 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 6.8E-51 1.5E-55 391.5 21.8 273 15-334 1-273 (371)
12 COG5277 Actin and related prot 100.0 2.1E-48 4.6E-53 376.7 20.8 294 9-331 2-316 (444)
13 KOG0680|consensus 100.0 4.6E-47 1E-51 340.1 16.1 266 13-334 3-301 (400)
14 KOG0678|consensus 100.0 1.3E-42 2.8E-47 312.0 11.5 284 14-333 5-297 (415)
15 KOG0681|consensus 100.0 2.2E-36 4.8E-41 286.9 14.6 223 13-279 23-251 (645)
16 PRK13930 rod shape-determining 100.0 7.2E-29 1.6E-33 235.4 13.9 180 15-222 10-198 (335)
17 PRK13927 rod shape-determining 100.0 3.1E-28 6.6E-33 231.1 13.1 178 15-221 7-193 (334)
18 TIGR00904 mreB cell shape dete 99.9 1.6E-24 3.5E-29 205.6 16.0 182 16-222 5-196 (333)
19 KOG0797|consensus 99.9 5.6E-24 1.2E-28 201.4 16.9 203 90-326 178-399 (618)
20 PRK13929 rod-share determining 99.9 4E-24 8.6E-29 202.9 14.6 177 15-221 6-195 (335)
21 PRK13928 rod shape-determining 99.8 5.9E-19 1.3E-23 167.7 19.7 177 16-221 6-192 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 2E-17 4.4E-22 155.0 20.0 181 14-222 2-191 (326)
23 COG1077 MreB Actin-like ATPase 99.6 2.5E-13 5.4E-18 124.2 17.7 183 14-222 7-199 (342)
24 TIGR02529 EutJ ethanolamine ut 99.1 1.5E-09 3.4E-14 98.2 15.3 122 94-220 28-152 (239)
25 PRK15080 ethanolamine utilizat 99.0 2.6E-08 5.6E-13 91.7 18.0 122 94-220 55-179 (267)
26 CHL00094 dnaK heat shock prote 98.7 5.4E-07 1.2E-11 92.6 18.4 117 102-221 110-237 (621)
27 PLN03184 chloroplast Hsp70; Pr 98.7 1E-06 2.3E-11 91.1 18.4 118 101-221 146-274 (673)
28 TIGR01991 HscA Fe-S protein as 98.6 1.2E-06 2.7E-11 89.5 17.6 115 105-222 107-232 (599)
29 PRK13410 molecular chaperone D 98.6 2.1E-06 4.6E-11 88.7 17.4 94 127-221 136-237 (668)
30 PTZ00400 DnaK-type molecular c 98.6 1.9E-06 4.2E-11 89.1 17.1 95 126-221 174-276 (663)
31 PRK05183 hscA chaperone protei 98.6 2.9E-06 6.3E-11 87.0 18.1 114 106-222 128-252 (616)
32 TIGR02350 prok_dnaK chaperone 98.6 1.8E-06 3.9E-11 88.4 16.4 94 127-221 131-233 (595)
33 PRK00290 dnaK molecular chaper 98.6 2.1E-06 4.5E-11 88.4 16.5 94 127-221 134-235 (627)
34 PRK13411 molecular chaperone D 98.6 1.9E-06 4.1E-11 89.0 16.0 94 127-221 134-236 (653)
35 PTZ00009 heat shock 70 kDa pro 98.5 6.7E-06 1.5E-10 85.0 17.3 94 127-221 141-244 (653)
36 PTZ00186 heat shock 70 kDa pre 98.4 6.5E-06 1.4E-10 84.9 16.0 94 127-221 161-262 (657)
37 TIGR03739 PRTRC_D PRTRC system 98.4 4.5E-06 9.6E-11 78.9 12.7 194 18-222 2-215 (320)
38 PRK01433 hscA chaperone protei 98.4 1.6E-05 3.4E-10 81.2 17.4 114 106-222 120-244 (595)
39 PF00012 HSP70: Hsp70 protein; 98.4 9.4E-06 2E-10 83.0 15.2 94 127-221 136-238 (602)
40 PRK11678 putative chaperone; P 98.3 1.8E-05 3.8E-10 78.2 15.7 88 127-216 150-260 (450)
41 COG0443 DnaK Molecular chapero 98.2 0.0001 2.2E-09 75.1 17.5 187 13-221 5-222 (579)
42 PRK13917 plasmid segregation p 98.1 9.1E-05 2E-09 70.8 15.1 199 13-222 2-233 (344)
43 PRK10719 eutA reactivating fac 97.8 0.00026 5.6E-09 69.1 11.5 128 93-226 53-207 (475)
44 TIGR01174 ftsA cell division p 97.2 0.0048 1E-07 59.5 12.5 79 138-219 156-239 (371)
45 PRK09472 ftsA cell division pr 97.2 0.0028 6.1E-08 62.2 10.4 79 138-219 164-247 (420)
46 PF06406 StbA: StbA protein; 96.7 0.032 7E-07 52.7 12.7 113 110-223 80-214 (318)
47 PF06277 EutA: Ethanolamine ut 96.5 0.039 8.4E-07 54.2 12.2 127 94-226 51-204 (473)
48 KOG0104|consensus 96.4 0.07 1.5E-06 54.7 13.6 95 126-221 158-275 (902)
49 TIGR01175 pilM type IV pilus a 96.1 0.058 1.2E-06 51.4 11.0 80 137-219 140-231 (348)
50 COG0849 ftsA Cell division ATP 96.1 0.02 4.2E-07 55.9 7.7 78 140-220 165-247 (418)
51 PRK11031 guanosine pentaphosph 96.1 0.097 2.1E-06 52.6 12.7 81 131-214 82-170 (496)
52 KOG0681|consensus 95.9 0.0011 2.5E-08 64.9 -1.6 32 302-334 511-542 (645)
53 TIGR03706 exo_poly_only exopol 95.9 0.1 2.2E-06 48.9 11.2 85 126-214 72-163 (300)
54 COG4972 PilM Tfp pilus assembl 95.8 0.46 1E-05 44.6 14.9 43 176-220 195-237 (354)
55 KOG0101|consensus 95.5 0.45 9.7E-06 48.5 14.6 93 127-220 144-246 (620)
56 COG4820 EutJ Ethanolamine util 95.1 0.012 2.6E-07 51.1 1.9 116 95-215 61-179 (277)
57 PRK10854 exopolyphosphatase; P 95.0 0.24 5.1E-06 50.0 11.1 80 131-213 87-174 (513)
58 COG0248 GppA Exopolyphosphatas 93.8 0.27 5.8E-06 49.2 8.3 105 106-214 52-167 (492)
59 PF11104 PilM_2: Type IV pilus 92.6 0.21 4.6E-06 47.5 5.4 110 104-219 86-223 (340)
60 PF02541 Ppx-GppA: Ppx/GppA ph 91.0 1.5 3.2E-05 40.5 9.1 85 127-215 59-151 (285)
61 PF01968 Hydantoinase_A: Hydan 89.1 0.65 1.4E-05 43.3 5.0 33 165-197 67-100 (290)
62 KOG0103|consensus 86.5 3.6 7.8E-05 42.3 8.6 96 125-221 136-246 (727)
63 COG4819 EutA Ethanolamine util 85.9 4.9 0.00011 38.0 8.5 112 94-211 53-180 (473)
64 TIGR03123 one_C_unchar_1 proba 84.8 7.8 0.00017 36.6 9.6 28 171-198 125-152 (318)
65 PF14450 FtsA: Cell division p 79.6 7.3 0.00016 31.0 6.4 43 177-221 2-54 (120)
66 PRK13321 pantothenate kinase; 79.4 16 0.00035 33.2 9.4 18 16-33 3-20 (256)
67 KOG0100|consensus 78.5 7.7 0.00017 37.7 7.1 93 127-220 173-274 (663)
68 COG1521 Pantothenate kinase ty 78.0 37 0.0008 31.0 11.1 19 15-33 2-20 (251)
69 TIGR00241 CoA_E_activ CoA-subs 77.6 51 0.0011 29.6 12.1 45 175-219 92-137 (248)
70 COG1548 Predicted transcriptio 73.8 2.4 5.1E-05 38.6 2.2 23 173-195 129-151 (330)
71 PRK13318 pantothenate kinase; 71.8 76 0.0017 28.7 11.8 18 15-32 2-19 (258)
72 PF08841 DDR: Diol dehydratase 67.6 23 0.00049 32.9 7.1 81 137-219 92-177 (332)
73 cd08627 PI-PLCc_gamma1 Catalyt 66.6 14 0.0003 33.1 5.5 44 106-155 74-117 (229)
74 PF08735 DUF1786: Putative pyr 65.9 82 0.0018 28.8 10.3 75 142-219 129-213 (254)
75 cd08626 PI-PLCc_beta4 Catalyti 65.3 14 0.00031 33.7 5.4 44 106-155 76-119 (257)
76 cd08630 PI-PLCc_delta3 Catalyt 65.3 14 0.00031 33.7 5.4 44 106-155 74-117 (258)
77 cd08596 PI-PLCc_epsilon Cataly 65.1 14 0.00031 33.6 5.4 44 106-155 74-117 (254)
78 cd08632 PI-PLCc_eta1 Catalytic 65.0 15 0.00032 33.4 5.4 44 106-155 74-117 (253)
79 cd08629 PI-PLCc_delta1 Catalyt 64.3 15 0.00033 33.5 5.3 44 106-155 74-117 (258)
80 cd08595 PI-PLCc_zeta Catalytic 63.8 16 0.00034 33.5 5.3 44 106-155 74-117 (257)
81 cd08594 PI-PLCc_eta Catalytic 63.1 17 0.00037 32.6 5.4 44 106-155 74-117 (227)
82 cd08631 PI-PLCc_delta4 Catalyt 63.0 16 0.00035 33.4 5.3 44 106-155 74-117 (258)
83 cd08593 PI-PLCc_delta Catalyti 63.0 16 0.00035 33.4 5.3 44 106-155 74-117 (257)
84 cd08633 PI-PLCc_eta2 Catalytic 62.4 18 0.00038 33.0 5.4 44 106-155 74-117 (254)
85 cd08591 PI-PLCc_beta Catalytic 62.0 18 0.00038 33.1 5.3 44 106-155 76-119 (257)
86 cd08592 PI-PLCc_gamma Catalyti 60.0 21 0.00044 32.1 5.3 44 106-155 74-117 (229)
87 cd08598 PI-PLC1c_yeast Catalyt 58.5 22 0.00048 32.0 5.3 44 106-155 74-117 (231)
88 cd08597 PI-PLCc_PRIP_metazoa C 57.0 23 0.00051 32.4 5.3 44 106-155 74-117 (260)
89 cd08558 PI-PLCc_eukaryota Cata 55.6 27 0.00059 31.3 5.4 44 106-155 74-117 (226)
90 cd08623 PI-PLCc_beta1 Catalyti 54.7 27 0.00059 31.9 5.3 44 106-155 76-120 (258)
91 cd08624 PI-PLCc_beta2 Catalyti 54.3 27 0.00059 32.0 5.2 44 106-155 76-120 (261)
92 cd08628 PI-PLCc_gamma2 Catalyt 53.8 30 0.00064 31.6 5.4 44 106-155 74-117 (254)
93 TIGR03286 methan_mark_15 putat 52.3 1.3E+02 0.0027 29.6 9.7 102 106-218 179-287 (404)
94 PRK13324 pantothenate kinase; 49.1 2.1E+02 0.0046 26.1 13.8 18 15-32 2-19 (258)
95 cd08625 PI-PLCc_beta3 Catalyti 48.5 35 0.00076 31.2 5.0 44 106-155 76-120 (258)
96 TIGR03367 queuosine_QueD queuo 47.1 27 0.00058 26.4 3.5 50 98-154 42-91 (92)
97 PLN02230 phosphoinositide phos 42.1 47 0.001 34.2 5.3 44 106-155 187-230 (598)
98 KOG0102|consensus 41.9 72 0.0016 32.4 6.3 92 128-220 162-261 (640)
99 cd08599 PI-PLCc_plant Catalyti 41.9 63 0.0014 29.0 5.5 48 106-160 74-121 (228)
100 PLN02952 phosphoinositide phos 41.5 51 0.0011 34.0 5.4 44 106-155 196-239 (599)
101 COG0145 HyuA N-methylhydantoin 41.1 32 0.00069 36.0 4.0 44 154-197 252-301 (674)
102 PLN02222 phosphoinositide phos 40.7 49 0.0011 34.0 5.2 44 106-155 176-219 (581)
103 PLN02228 Phosphoinositide phos 40.1 55 0.0012 33.5 5.4 44 106-155 179-222 (567)
104 TIGR00671 baf pantothenate kin 39.5 2.9E+02 0.0062 24.9 12.7 18 16-33 2-19 (243)
105 PRK13326 pantothenate kinase; 38.9 3.1E+02 0.0067 25.1 11.9 19 15-33 8-26 (262)
106 PLN02223 phosphoinositide phos 38.3 62 0.0013 32.8 5.4 45 106-155 179-223 (537)
107 TIGR00744 ROK_glcA_fam ROK fam 38.0 1.2E+02 0.0027 28.0 7.2 53 144-198 88-147 (318)
108 TIGR00039 6PTHBS 6-pyruvoyl te 35.0 46 0.001 26.6 3.3 52 98-154 44-95 (124)
109 KOG1794|consensus 34.1 4E+02 0.0087 25.1 9.4 90 106-196 47-142 (336)
110 KOG0169|consensus 33.3 78 0.0017 33.2 5.2 47 107-160 362-408 (746)
111 PF03612 EIIBC-GUT_N: Sorbitol 31.0 23 0.0005 30.5 0.9 31 11-46 61-91 (183)
112 PF07318 DUF1464: Protein of u 30.3 99 0.0022 29.5 5.1 50 171-220 151-204 (343)
113 PF13941 MutL: MutL protein 29.8 1.3E+02 0.0029 29.9 6.1 75 126-200 178-274 (457)
114 smart00842 FtsA Cell division 29.3 1.6E+02 0.0035 25.0 6.0 23 95-117 35-57 (187)
115 COG4012 Uncharacterized protei 28.3 4.2E+02 0.009 24.6 8.4 45 174-220 227-274 (342)
116 PRK00568 carbon storage regula 28.1 60 0.0013 23.8 2.5 30 4-36 9-38 (76)
117 smart00732 YqgFc Likely ribonu 25.4 82 0.0018 23.4 3.1 18 15-32 3-20 (99)
118 PF09153 DUF1938: Domain of un 24.3 3.1E+02 0.0066 20.5 5.6 47 179-227 7-56 (86)
119 KOG1265|consensus 24.2 1.3E+02 0.0029 32.4 5.0 43 106-154 388-430 (1189)
120 PF00480 ROK: ROK family; Int 22.9 4.1E+02 0.0088 21.9 7.3 55 143-199 81-142 (179)
121 smart00732 YqgFc Likely ribonu 22.2 2.4E+02 0.0052 20.7 5.2 47 176-222 3-50 (99)
122 cd00470 PTPS 6-pyruvoyl tetrah 22.0 95 0.0021 25.3 3.0 51 99-154 57-109 (135)
123 PF14401 RLAN: RimK-like ATPgr 21.0 4.3E+02 0.0093 22.0 6.8 54 104-160 65-118 (153)
124 TIGR03286 methan_mark_15 putat 20.8 2.1E+02 0.0046 28.0 5.5 49 176-224 146-194 (404)
125 TIGR03192 benz_CoA_bzdQ benzoy 20.6 2.1E+02 0.0045 26.8 5.2 46 177-224 35-83 (293)
126 PRK00976 hypothetical protein; 20.1 1.9E+02 0.0042 27.4 4.9 33 165-198 140-172 (326)
No 1
>KOG0679|consensus
Probab=100.00 E-value=2.6e-68 Score=487.13 Aligned_cols=303 Identities=50% Similarity=0.887 Sum_probs=282.1
Q ss_pred CCCCCCcccCCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEec
Q psy3377 1 MSAGGILYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFID 80 (336)
Q Consensus 1 ~~~~~~~~~~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG 80 (336)
||++ +||||++++||||+||+++||||||+|.|++++||++|.....++.. ...+.+|++
T Consensus 1 Ms~~--~yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~------------------~~~~~~y~~ 60 (426)
T KOG0679|consen 1 MSGG--VYGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA------------------EDKKGYYVD 60 (426)
T ss_pred CCCc--cccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc------------------ccccceEee
Confidence 6665 99999999999999999999999999999999999999764332211 012458999
Q ss_pred chhhhcccCCeEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEE
Q psy3377 81 TNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFL 160 (336)
Q Consensus 81 ~~~~~~~~~~~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~ 160 (336)
.+++..+|..+++..|+++|+|.|||.++.+|+|+|.++|+++|++||+|+|||++++++.|+|++|++||.++||++|+
T Consensus 61 ~~ai~~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L 140 (426)
T KOG0679|consen 61 ENAIHVPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYL 140 (426)
T ss_pred chhccCCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEE
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred ehhHHHHHHHcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccC
Q psy3377 161 VKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKD 240 (336)
Q Consensus 161 ~~~~~la~~s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~ 240 (336)
+++++|++||+||.||||||||+..|+|+||+||++++++++++++||++|+..++++|..+++++.|.+.+++++.++.
T Consensus 141 ~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~ 220 (426)
T KOG0679|consen 141 AKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVRE 220 (426)
T ss_pred echHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred CCCCcccccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccc
Q psy3377 241 KEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQ 320 (336)
Q Consensus 241 ~~~~~~~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p 320 (336)
-..+.+.++...-.++.||+.|..+.|..|+|++++++++.|++++.....+.+.|++|||++.++|.|||++||.||.|
T Consensus 221 g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~P 300 (426)
T KOG0679|consen 221 GYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKP 300 (426)
T ss_pred cCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCc
Confidence 76666666777778899999999999999999999999999999998888899999999999999999999999999999
Q ss_pred ccc
Q psy3377 321 NIA 323 (336)
Q Consensus 321 ~~~ 323 (336)
++.
T Consensus 301 s~v 303 (426)
T KOG0679|consen 301 SLV 303 (426)
T ss_pred chh
Confidence 965
No 2
>KOG0676|consensus
Probab=100.00 E-value=1e-65 Score=481.65 Aligned_cols=275 Identities=32% Similarity=0.522 Sum_probs=246.7
Q ss_pred cccCCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhc
Q psy3377 7 LYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYV 86 (336)
Q Consensus 7 ~~~~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 86 (336)
+|..++..+||||+||+.+||||||++.|+.+|||++|++++..... ++ ..++.++|+++. .
T Consensus 1 ~~~~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~-------~~----------~~~~~~vg~~a~-~ 62 (372)
T KOG0676|consen 1 SYEADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMA-------GM----------TQKDTYVGDEAE-S 62 (372)
T ss_pred CCCcCCcceEEEECCCceeecccCCCCCCceecceeccccccccccc-------cc----------cccccccchhhh-c
Confidence 36678889999999999999999999999999999999988765533 12 246788999984 3
Q ss_pred ccCCeEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHH
Q psy3377 87 ARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVL 166 (336)
Q Consensus 87 ~~~~~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~l 166 (336)
+| .+.||+++|+|.|||+|+.||+|+|++.|+++|++||||+||++++|+..||+++|+|||+|++|++|++.++++
T Consensus 63 ~~---~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl 139 (372)
T KOG0676|consen 63 KR---TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL 139 (372)
T ss_pred cc---cccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH
Confidence 44 789999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcc
Q psy3377 167 AAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKW 246 (336)
Q Consensus 167 a~~s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~ 246 (336)
|++|++||+|||+|++.|+++||+||+++++++.++++||++||+||+..|.++++.+. ...+.++++++
T Consensus 140 --ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~---~~~~~eIv~di----- 209 (372)
T KOG0676|consen 140 --YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFT---TSAEFEIVRDI----- 209 (372)
T ss_pred --HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccc---cccHHHHHHHh-----
Confidence 99999999999999999999999999999999999999999999999999999887776 45678889999
Q ss_pred cccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCC
Q psy3377 247 TRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQ 326 (336)
Q Consensus 247 ~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~ 326 (336)
||++| ||+.|+++++..... ......+|+||||+.|.+++|||.|||+||+|+++|++
T Consensus 210 --KeklC------------yvald~~~e~~~~~~--------~~~l~~~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e 267 (372)
T KOG0676|consen 210 --KEKLC------------YVALDFEEEEETANT--------SSSLESSYELPDGQKITIGNERFRCPEVLFQPSLLGME 267 (372)
T ss_pred --Hhhhc------------ccccccchhhhcccc--------cccccccccCCCCCEEecCCcccccchhcCChhhcCCC
Confidence 99999 999999998765211 12234569999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy3377 327 PGSGISPTD 335 (336)
Q Consensus 327 ~~~gi~~~~ 335 (336)
.+|||++.
T Consensus 268 -~~gi~~~~ 275 (372)
T KOG0676|consen 268 -SPGIHELT 275 (372)
T ss_pred -CCchhHHH
Confidence 89999753
No 3
>KOG0677|consensus
Probab=100.00 E-value=1.3e-64 Score=441.97 Aligned_cols=276 Identities=25% Similarity=0.423 Sum_probs=246.9
Q ss_pred CCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCC
Q psy3377 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKG 90 (336)
Q Consensus 11 ~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 90 (336)
|...+||+|+|++++|+||||+..|.++||+.||||..+..... +.. .-++..+|+++ ..-|+.
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~------g~~---------~iKD~mvGdea-selRs~ 65 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKV------GNI---------EIKDLMVGDEA-SELRSL 65 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhc------cCe---------ehhhheccchH-HHHHHH
Confidence 56789999999999999999999999999999999965433210 111 13688999998 456788
Q ss_pred eEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHH
Q psy3377 91 MEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFA 170 (336)
Q Consensus 91 ~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s 170 (336)
+++.||+++|+|.|||+|+++|+|+|.++|+++|.++.+++||||++|.+.|||++|++||++++.++|++.|++|++||
T Consensus 66 L~i~YPmeNGivrnwddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYA 145 (389)
T KOG0677|consen 66 LDINYPMENGIVRNWDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYA 145 (389)
T ss_pred HhcCCccccccccChHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcccccC
Q psy3377 171 NGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKK 250 (336)
Q Consensus 171 ~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~Ke 250 (336)
.|..||+|||+|.+.|+|+||++|++++|-.+|++++|+++|+||.++|..+||.+. ..++-+.|+++ ||
T Consensus 146 QGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN---~tADFETVR~i-------KE 215 (389)
T KOG0677|consen 146 QGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFN---HTADFETVREI-------KE 215 (389)
T ss_pred hcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccc---cccchHHHHHH-------Hh
Confidence 999999999999999999999999999999999999999999999999999999987 45677899999 99
Q ss_pred CCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCCCCC
Q psy3377 251 NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSG 330 (336)
Q Consensus 251 ~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~~~g 330 (336)
++| |++-|++.+-...- ..+...++|+||||.+|.+|.|||.+||+||+|.+++.+ ++|
T Consensus 216 KLC------------YisYd~e~e~kLal--------ETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE-~~G 274 (389)
T KOG0677|consen 216 KLC------------YISYDLELEQKLAL--------ETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVE-GPG 274 (389)
T ss_pred hhe------------eEeechhhhhHhhh--------hheeeeeeeecCCCcEEEecceeccCchhhcCcceeccC-CCc
Confidence 999 77777765432211 133456899999999999999999999999999999999 899
Q ss_pred CCC
Q psy3377 331 ISP 333 (336)
Q Consensus 331 i~~ 333 (336)
+++
T Consensus 275 ~ae 277 (389)
T KOG0677|consen 275 VAE 277 (389)
T ss_pred HHH
Confidence 875
No 4
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3.4e-63 Score=476.09 Aligned_cols=274 Identities=27% Similarity=0.432 Sum_probs=240.1
Q ss_pred CceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeE
Q psy3377 13 IGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGME 92 (336)
Q Consensus 13 ~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 92 (336)
.++||||+||+++||||||++.|++++||++|+++...... + ...+++++|+++. ..+..++
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~---------~--------~~~~~~~iG~~~~-~~~~~~~ 66 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIF---------S--------TFNKEYYVGEEAQ-AKRGVLA 66 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccc---------c--------ccccceEEChhhh-ccccCcE
Confidence 35899999999999999999999999999999987642211 0 0124789999974 4677899
Q ss_pred EeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcC
Q psy3377 93 IQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANG 172 (336)
Q Consensus 93 l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g 172 (336)
+.+|+++|+|.|||++|.+|+|+|.+.|+++|++||+++||++++++..|++++|+|||+|++|+++++++++|++||+|
T Consensus 67 l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g 146 (375)
T PTZ00452 67 IKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG 146 (375)
T ss_pred EcccCcCCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcccccCCC
Q psy3377 173 RATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNL 252 (336)
Q Consensus 173 ~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~Ke~~ 252 (336)
++||||||+|++.|+|+||+||++++++++++++||+++|++|.++|.++++.+.. ..+.+.++++ ||++
T Consensus 147 ~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~---~~~~~~~~~i-------Ke~~ 216 (375)
T PTZ00452 147 KTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTE---PHQRIIVKNI-------KERL 216 (375)
T ss_pred CceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCC---HHHHHHHHHH-------HHHh
Confidence 99999999999999999999999999999999999999999999999988887652 2245677888 9999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCCCCCCC
Q psy3377 253 PEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGIS 332 (336)
Q Consensus 253 c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~~~gi~ 332 (336)
| ||+.|+.+++..... .....+.|+||||+.|.++.|||.|||+||+|+++|.+ .+||+
T Consensus 217 c------------~v~~d~~~e~~~~~~--------~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~-~~gi~ 275 (375)
T PTZ00452 217 C------------YTALDPQDEKRIYKE--------SNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLE-VAGIH 275 (375)
T ss_pred c------------cccCcHHHHHHHhhc--------cCCcCceEECCCCCEEEeehHHhcCcccccChhhcCCC-CCChh
Confidence 9 777676655432211 11234689999999999999999999999999999999 79998
Q ss_pred CCC
Q psy3377 333 PTD 335 (336)
Q Consensus 333 ~~~ 335 (336)
++.
T Consensus 276 ~~i 278 (375)
T PTZ00452 276 HLA 278 (375)
T ss_pred HHH
Confidence 753
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.6e-62 Score=469.80 Aligned_cols=278 Identities=30% Similarity=0.538 Sum_probs=242.2
Q ss_pred cCCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhccc
Q psy3377 9 GGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVAR 88 (336)
Q Consensus 9 ~~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 88 (336)
+|||.++||||+||+++|+|||||+.|++++||+|++++...... +. .+.++++|+++. ..+
T Consensus 2 ~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~-------~~----------~~~~~~~g~~~~-~~~ 63 (376)
T PTZ00281 2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMV-------GM----------GQKDSYVGDEAQ-SKR 63 (376)
T ss_pred CCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCccccc-------Cc----------ccCCeEECchhh-ccc
Confidence 689999999999999999999999999999999999887643211 01 124678999974 467
Q ss_pred CCeEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHH
Q psy3377 89 KGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAA 168 (336)
Q Consensus 89 ~~~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~ 168 (336)
..+.+++|+++|.|.|||+++.+|+|+|.+.|+++|+++|+++||++++++..|++++|+|||+|++|+++++++++|++
T Consensus 64 ~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ 143 (376)
T PTZ00281 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 143 (376)
T ss_pred cCcEEeccCcCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHH
Confidence 78899999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcccc
Q psy3377 169 FANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTR 248 (336)
Q Consensus 169 ~s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 248 (336)
||+|++||||||+|++.|+|+||+||+++.++++++++||+++|++|+++|.++++++.. ..+.+.++++
T Consensus 144 ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~---~~~~~~~~~i------- 213 (376)
T PTZ00281 144 YASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTT---TAEREIVRDI------- 213 (376)
T ss_pred HhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHH-------
Confidence 999999999999999999999999999999999999999999999999999988876642 2355678888
Q ss_pred cCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCCC
Q psy3377 249 KKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPG 328 (336)
Q Consensus 249 Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~~ 328 (336)
||++| ||+.|+..++..... .....+.|+||||++|.++.|||.|||+||+|+++|.+ .
T Consensus 214 Ke~~c------------~v~~d~~~~~~~~~~--------~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~-~ 272 (376)
T PTZ00281 214 KEKLA------------YVALDFEAEMQTAAS--------SSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGME-S 272 (376)
T ss_pred HHhcE------------EecCCchHHHHhhhc--------CcccceeEECCCCCEEEeeHHHeeCcccccChhhcCCC-C
Confidence 99999 555555444332111 11234689999999999999999999999999999999 7
Q ss_pred CCCCCCC
Q psy3377 329 SGISPTD 335 (336)
Q Consensus 329 ~gi~~~~ 335 (336)
+||+++.
T Consensus 273 ~gi~~~i 279 (376)
T PTZ00281 273 AGIHETT 279 (376)
T ss_pred CCHHHHH
Confidence 8998753
No 6
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.4e-61 Score=465.46 Aligned_cols=270 Identities=25% Similarity=0.417 Sum_probs=236.6
Q ss_pred ceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeEE
Q psy3377 14 GALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEI 93 (336)
Q Consensus 14 ~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~l 93 (336)
.+||||+||+++||||||++.|++++||++|+++...... +. ...++++|+++. ..++.+++
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~-------~~----------~~~~~~vG~~~~-~~~~~~~l 74 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMA-------GA----------VEGNIFVGNKAE-EYRGLLKV 74 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccc-------cC----------CCCCeEECchhh-hhCcCcee
Confidence 4899999999999999999999999999999987643211 01 124678999974 45778899
Q ss_pred eccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC
Q psy3377 94 QSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR 173 (336)
Q Consensus 94 ~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~ 173 (336)
.+|+++|+|.|||.+|.+|+|+| +.|+++|+++|+++||++++++..|++++|+|||+|++|+++++++++||+||+|+
T Consensus 75 ~~Pi~~G~v~dwd~~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~ 153 (380)
T PTZ00466 75 TYPINHGIIENWNDMENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK 153 (380)
T ss_pred CccccCCeECCHHHHHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcccccCCCC
Q psy3377 174 ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLP 253 (336)
Q Consensus 174 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~Ke~~c 253 (336)
+||+|||+|++.|+|+||+||+++.++++++++||+++|++|+++|.++++.+. ...+.+.++++ ||++|
T Consensus 154 ~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~---~~~~~~~v~~i-------Ke~~c 223 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFN---TSAEMEVVKNM-------KENCC 223 (380)
T ss_pred ceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHH-------HHhCe
Confidence 999999999999999999999999999999999999999999999998877654 22355678888 99999
Q ss_pred CCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCCCCCCCC
Q psy3377 254 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGISP 333 (336)
Q Consensus 254 ~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~~~gi~~ 333 (336)
||+.|+.++..... .....+.|+||||+.|.|+.|||.|||+||+|+++|++ ..||++
T Consensus 224 ------------~v~~d~~~e~~~~~---------~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~-~~gl~~ 281 (380)
T PTZ00466 224 ------------YVSFNMNKEKNSSE---------KALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLE-YLGLSE 281 (380)
T ss_pred ------------EecCChHHHHhhcc---------ccccceeEECCCCcEEEEchHHhcCcccccCccccCCC-CCCHHH
Confidence 77777665543211 11224689999999999999999999999999999999 799987
Q ss_pred C
Q psy3377 334 T 334 (336)
Q Consensus 334 ~ 334 (336)
.
T Consensus 282 ~ 282 (380)
T PTZ00466 282 L 282 (380)
T ss_pred H
Confidence 5
No 7
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.4e-59 Score=452.24 Aligned_cols=279 Identities=28% Similarity=0.495 Sum_probs=241.2
Q ss_pred CCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccC
Q psy3377 10 GDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARK 89 (336)
Q Consensus 10 ~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 89 (336)
-++.++||||+||+++|+||||++.|++++||++++++...... +. .++++++|+++. ..++
T Consensus 3 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~-------~~----------~~~~~~~g~~~~-~~~~ 64 (378)
T PTZ00004 3 VEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMV-------GM----------EEKDCYVGDEAQ-DKRG 64 (378)
T ss_pred CCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEeccccccc-------Cc----------CCCceEECchhh-cccc
Confidence 36788999999999999999999999999999999987643211 00 124678999874 4566
Q ss_pred CeEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHH
Q psy3377 90 GMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAF 169 (336)
Q Consensus 90 ~~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~ 169 (336)
.+.+++|+++|.|.|||.++.+|+|+|.+.|++++.++||++||++++++..|++++|+|||.|++|+++++++++||+|
T Consensus 65 ~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~y 144 (378)
T PTZ00004 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLY 144 (378)
T ss_pred cceEcccCcCCEEcCHHHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHH
Confidence 78999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCccccc
Q psy3377 170 ANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRK 249 (336)
Q Consensus 170 s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~K 249 (336)
++|++||||||+|++.|+|+||+||+++.++++++++||++++++|+++|.++++.+.+ ..+.+.++++ |
T Consensus 145 a~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~---~~~~~~~~~i-------K 214 (378)
T PTZ00004 145 ASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTT---TAEKEIVRDI-------K 214 (378)
T ss_pred hcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHH-------h
Confidence 99999999999999999999999999999999999999999999999999998877653 2245677888 9
Q ss_pred CCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCCCC
Q psy3377 250 KNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGS 329 (336)
Q Consensus 250 e~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~~~ 329 (336)
|++| ||+.|+.+++...... .....+.|+||||++|.++.|||.|||+||+|+++|.+..+
T Consensus 215 e~~c------------~v~~d~~~~~~~~~~~-------~~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~ 275 (378)
T PTZ00004 215 EKLC------------YIALDFDEEMGNSAGS-------SDKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPP 275 (378)
T ss_pred hcce------------eecCCHHHHHhhhhcC-------ccccceEEECCCCCEEEEcHHHeeCcccccChhhcCccccC
Confidence 9999 6666666554321110 11224789999999999999999999999999999987568
Q ss_pred CCCCCC
Q psy3377 330 GISPTD 335 (336)
Q Consensus 330 gi~~~~ 335 (336)
||+++.
T Consensus 276 gi~~~i 281 (378)
T PTZ00004 276 GIHELT 281 (378)
T ss_pred ChHHHH
Confidence 988653
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=8.3e-56 Score=430.97 Aligned_cols=278 Identities=27% Similarity=0.367 Sum_probs=234.5
Q ss_pred CceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeE
Q psy3377 13 IGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGME 92 (336)
Q Consensus 13 ~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 92 (336)
.++||||+||+++||||||++.|++++||++++++...... +.. .....++++|++++. .+..+.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~-------~~~-------~~~~~~~~vG~ea~~-~~~~~~ 68 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRR-------SKK-------GFEDLDFYIGDEALA-ASKSYT 68 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccc-------ccc-------ccccCCEEEcchhhh-CcCCcE
Confidence 45899999999999999999999999999999886532100 000 011246899999854 456789
Q ss_pred EeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHc-
Q psy3377 93 IQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN- 171 (336)
Q Consensus 93 l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~- 171 (336)
+.+|+++|+|.|||.+|.+|+|+|.+.|+++|++||++++|++++++..|++++|+|||+|++|+++++.+++||+||+
T Consensus 69 l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~ 148 (414)
T PTZ00280 69 LTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASW 148 (414)
T ss_pred EecCccCCEeCCHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhc
Confidence 9999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ---------CCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCC
Q psy3377 172 ---------GRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKE 242 (336)
Q Consensus 172 ---------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~ 242 (336)
|++||||||+|++.|+|+||++|+++.++++++++||++||++|.++|++++.++.+ ....+.++++
T Consensus 149 ~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~---~~~~~~~~~i- 224 (414)
T PTZ00280 149 TSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPA---EDILLLAQRI- 224 (414)
T ss_pred ccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999988876652 1234567788
Q ss_pred CCcccccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCC---cc--eeeecCccccccccc
Q psy3377 243 PPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPN---GY--HQDFGCRALPYSRGS 317 (336)
Q Consensus 243 ~~~~~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPD---g~--~i~l~~Erf~~~E~l 317 (336)
||++| ||..|+.+++......+ ......|++|| |. .|+|+.|||++||+|
T Consensus 225 ------Ke~~c------------~v~~d~~~e~~~~~~~~-------~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~L 279 (414)
T PTZ00280 225 ------KEKYC------------YVAPDIAKEFEKYDSDP-------KNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMF 279 (414)
T ss_pred ------HHhcC------------cccCcHHHHHHHhhcCc-------ccccceEECCCCCCCCccEEEechHHhcCcccc
Confidence 99999 77777666654321110 11235799998 33 899999999999999
Q ss_pred ccccccCCCCCCCCCCC
Q psy3377 318 VVQNIANMQPGSGISPT 334 (336)
Q Consensus 318 F~p~~~~~~~~~gi~~~ 334 (336)
|+|++++.+...||++.
T Consensus 280 F~P~~~~~~~~~gl~e~ 296 (414)
T PTZ00280 280 FHPEIFSSEWTTPLPEV 296 (414)
T ss_pred cChhhcCCccCCCHHHH
Confidence 99999887756688764
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.1e-54 Score=420.60 Aligned_cols=280 Identities=38% Similarity=0.691 Sum_probs=234.3
Q ss_pred CCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccC
Q psy3377 10 GDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARK 89 (336)
Q Consensus 10 ~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 89 (336)
||+.++||||+||++||||||||+.|+.++||+++++...... .++++|++.+. .+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~----------------------~~~~~g~~~~~-~~~ 57 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSS----------------------NDYYVGDEALS-PRS 57 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSS----------------------SSCEETHHHHH-TGT
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccc----------------------eeEEeeccccc-chh
Confidence 7999999999999999999999999999999999988765321 26789988655 577
Q ss_pred CeEEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHH
Q psy3377 90 GMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAF 169 (336)
Q Consensus 90 ~~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~ 169 (336)
...+.+|+++|.|.|||.++.+|+|+|.+.|++++.++|||+++|+++++..|++++|+|||+|++|+++++++++||+|
T Consensus 58 ~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~ 137 (393)
T PF00022_consen 58 NLELRSPIENGVIVDWDALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALY 137 (393)
T ss_dssp GEEEEESEETTEESSHHHHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHH
T ss_pred heeeeeeccccccccccccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccc
Confidence 89999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCccccc
Q psy3377 170 ANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRK 249 (336)
Q Consensus 170 s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~K 249 (336)
++|++||||||+|++.|+|+||+||+++.++++++++||++++++|+++|+++++.+.|.+.....
T Consensus 138 ~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~-------------- 203 (393)
T PF00022_consen 138 ASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSK-------------- 203 (393)
T ss_dssp HTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCH--------------
T ss_pred ccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccc--------------
Confidence 999999999999999999999999999999999999999999999999999988877654332211
Q ss_pred CCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcc--hhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCC
Q psy3377 250 KNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFD--EKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQP 327 (336)
Q Consensus 250 e~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~--~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~ 327 (336)
. ..-..+|..+....+.+++|+.+|.++..+.. ...........|+||||+.+.++.|||.+||+||+|+.++.+
T Consensus 204 ~--~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~- 280 (393)
T PF00022_consen 204 S--PVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGID- 280 (393)
T ss_dssp C--CC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSS-
T ss_pred c--ccccccccchhhhccchhccchhhhcccccccccccccccccceeccccccccccccccccccccccccccccccc-
Confidence 1 11155777777789999999999999876642 222345667899999999999999999999999999999998
Q ss_pred CC
Q psy3377 328 GS 329 (336)
Q Consensus 328 ~~ 329 (336)
..
T Consensus 281 ~~ 282 (393)
T PF00022_consen 281 SA 282 (393)
T ss_dssp ST
T ss_pred cc
Confidence 44
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=5.8e-52 Score=399.14 Aligned_cols=274 Identities=34% Similarity=0.588 Sum_probs=232.9
Q ss_pred ceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeEE
Q psy3377 14 GALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEI 93 (336)
Q Consensus 14 ~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~l 93 (336)
++||||+||++||+||+|++.|++++||++++++...... ...+.+++|+++ ...++..++
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~------------------~~~~~~~~G~~a-~~~~~~~~~ 62 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMV------------------GDAKDTFVGDEA-QEKRGGLEL 62 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEeccccccc------------------CCCcceEecchh-hhcCCCcee
Confidence 5899999999999999999999999999999886543210 012467899987 345666689
Q ss_pred eccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC
Q psy3377 94 QSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR 173 (336)
Q Consensus 94 ~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~ 173 (336)
.+|+++|.|.|||.++.+|+|+|.+.|++++.++|+++++|.++++..|++++|++||.|++|++++++++++++|++|+
T Consensus 63 ~~P~~~G~i~d~~~~e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~ 142 (373)
T smart00268 63 KYPIEHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGR 142 (373)
T ss_pred cCCCcCCEEeCHHHHHHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcccccCCCC
Q psy3377 174 ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLP 253 (336)
Q Consensus 174 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~Ke~~c 253 (336)
++|+|||+|++.|+|+||++|+++.++++++++||++++++|+++|++++..+. ...+.+.++++ ||++|
T Consensus 143 ~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~i-------Ke~~~ 212 (373)
T smart00268 143 TTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFN---SSAEFEIVREI-------KEKLC 212 (373)
T ss_pred CEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHh-------hhhee
Confidence 999999999999999999999999999999999999999999999988554433 12345677788 99999
Q ss_pred CCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCCCCCCCC
Q psy3377 254 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGISP 333 (336)
Q Consensus 254 ~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~~~gi~~ 333 (336)
+|..++.+++...... .........|+||||+.+.++.|||.+||+||+|++++.+ ..||++
T Consensus 213 ------------~v~~~~~~~~~~~~~~-----~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~-~~~i~~ 274 (373)
T smart00268 213 ------------YVAEDFEKEMKKARES-----SESSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLE-QKGIHE 274 (373)
T ss_pred ------------eecCChHHHHHHhhhc-----ccccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCC-cCCHHH
Confidence 5555554444322110 0012335789999999999999999999999999999998 789876
Q ss_pred C
Q psy3377 334 T 334 (336)
Q Consensus 334 ~ 334 (336)
.
T Consensus 275 ~ 275 (373)
T smart00268 275 L 275 (373)
T ss_pred H
Confidence 4
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=6.8e-51 Score=391.45 Aligned_cols=273 Identities=34% Similarity=0.548 Sum_probs=231.2
Q ss_pred eEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeEEe
Q psy3377 15 ALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQ 94 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~l~ 94 (336)
+||||+||+++|+||+|++.|++++||++++++...... + .....+++|+++.......+.+.
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~-------~----------~~~~~~~~G~~a~~~~~~~~~~~ 63 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMV-------G----------AGDKDYFVGEEALEKRGLGLELI 63 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCccccc-------c----------cCCCceEEchhhhhCCCCceEEc
Confidence 699999999999999999999999999999886543211 0 01257889998854333358999
Q ss_pred ccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCCC
Q psy3377 95 SYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRA 174 (336)
Q Consensus 95 ~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~~ 174 (336)
+|+++|.+.|||.++.+|+|+|.+.|.+++.++|+++++|+++++..|++++++|||.|++|++++++++++|+|++|++
T Consensus 64 ~P~~~G~i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~ 143 (371)
T cd00012 64 YPIEHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRT 143 (371)
T ss_pred ccccCCEEeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCC
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcccccCCCCC
Q psy3377 175 TGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPE 254 (336)
Q Consensus 175 tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~~~Ke~~c~ 254 (336)
+|+|||+|++.|+|+||+||+++.++++++++||++++++|+++|++++..+. .......++++ ||++|
T Consensus 144 ~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~i-------Ke~~~- 212 (371)
T cd00012 144 TGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELN---SSDEREIVRDI-------KEKLC- 212 (371)
T ss_pred eEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCcc---chhHHHHHHHH-------HHhhe-
Confidence 99999999999999999999999999999999999999999999998876433 12244567777 99999
Q ss_pred CChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCcceeeecCcccccccccccccccCCCCCCCCCCC
Q psy3377 255 VTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIANMQPGSGISPT 334 (336)
Q Consensus 255 ~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~~~~~~gi~~~ 334 (336)
||+.++.++...... ........|.||||++|.++.|||.+||+||+|++++.. ..||++.
T Consensus 213 -----------~v~~~~~~~~~~~~~-------~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~-~~~i~~~ 273 (371)
T cd00012 213 -----------YVALDIEEEQDKSAK-------ETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSE-QVGISEA 273 (371)
T ss_pred -----------eecCCHHHHHHhhhc-------cCCccceeEECCCCeEEEEChHHhhChHhcCChhhcCCC-cCCHHHH
Confidence 555555544311100 012334789999999999999999999999999999877 7888754
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.1e-48 Score=376.74 Aligned_cols=294 Identities=29% Similarity=0.496 Sum_probs=234.1
Q ss_pred cCCCCceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhccc
Q psy3377 9 GGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVAR 88 (336)
Q Consensus 9 ~~~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 88 (336)
.++..++||||+||+++|+||||++.|++++|+++++.+..... +. ....++.++|+++.....
T Consensus 2 ~~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~---------~~-------~~~~~~~~v~ne~~~~~~ 65 (444)
T COG5277 2 TGDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSV---------ME-------DTEEKDTYVGNEAQNDRD 65 (444)
T ss_pred CCCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccc---------cc-------cccccccccCchhhhccC
Confidence 45666679999999999999999999999999999998621110 00 011356788988754332
Q ss_pred -CCeEEeccccCCcccCHHHHHHHHHHHhhc--ccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHH
Q psy3377 89 -KGMEIQSYMKEGMIEDWDLFEKVLDYTYSK--CIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAV 165 (336)
Q Consensus 89 -~~~~l~~pi~~G~i~n~d~~e~i~~~~~~~--~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~ 165 (336)
...++++|+++|.|.||++++.+|+|+|.+ .+...+.+||+++|||+++++..|++++|++||+|++|+++++.+++
T Consensus 66 ~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~ 145 (444)
T COG5277 66 NSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAV 145 (444)
T ss_pred CccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHH
Confidence 278999999999999999999999999998 68889999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC--eEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHh-----CCcccCCCCccccceec
Q psy3377 166 LAAFANGRA--TGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQE-----NNIDIIPPYMVGGKEAI 238 (336)
Q Consensus 166 la~~s~g~~--tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~-----~~~~~~~~~~~~~~~~v 238 (336)
|++|+.|+. +|+|||+|++.|+|+||+||+++.++++++++||+++|.+|+++|.. +++.+.......+.+++
T Consensus 146 l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~ 225 (444)
T COG5277 146 LSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIV 225 (444)
T ss_pred HHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHH
Confidence 999999999 99999999999999999999999999999999999999999999998 45544321000234566
Q ss_pred cCCCCCcccccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCC--------cchhhhcCCCCeEEECCCcceeeecCc-
Q psy3377 239 KDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETP--------FDEKSILNLPPSHYEFPNGYHQDFGCR- 309 (336)
Q Consensus 239 ~~~~~~~~~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~y~LPDg~~i~l~~E- 309 (336)
+.+ |+++|.... ...|+..+.++......+.+ .+...........|++|||..|.++.|
T Consensus 226 ~~i-------k~e~~~~~~-----~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~ 293 (444)
T COG5277 226 NEI-------KEEVCETDD-----ESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEE 293 (444)
T ss_pred HHH-------HHhhccccc-----cccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhh
Confidence 666 888885543 11134444333332221110 111112334568899999999999999
Q ss_pred cccccccccccc--ccCCCCCCCC
Q psy3377 310 ALPYSRGSVVQN--IANMQPGSGI 331 (336)
Q Consensus 310 rf~~~E~lF~p~--~~~~~~~~gi 331 (336)
||.+||.||+|. ..+++ ..|+
T Consensus 294 rf~~pE~lF~pe~~~~~l~-~~~~ 316 (444)
T COG5277 294 RFKAPEILFKPELPISGLE-EAGK 316 (444)
T ss_pred hhhcchhhcCCcccccccc-cccc
Confidence 999999999999 88888 6773
No 13
>KOG0680|consensus
Probab=100.00 E-value=4.6e-47 Score=340.13 Aligned_cols=266 Identities=20% Similarity=0.323 Sum_probs=226.8
Q ss_pred CceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcc--cCC
Q psy3377 13 IGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVA--RKG 90 (336)
Q Consensus 13 ~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~--~~~ 90 (336)
..+||||+|++++|+|+++++.|+ ++|+|+.+.+... ++.++|++. ... ...
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~------------------------rr~f~~nei-~ec~D~ss 56 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGR------------------------RRSFLANEI-DECKDISS 56 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCce-eccchhhhccccc------------------------chhhhhhhh-hhccCccc
Confidence 568999999999999999999997 4799988776532 456788875 444 346
Q ss_pred eEEeccccCCcccCHHHHHHHHHHHhhcc-cCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHH
Q psy3377 91 MEIQSYMKEGMIEDWDLFEKVLDYTYSKC-IESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAF 169 (336)
Q Consensus 91 ~~l~~pi~~G~i~n~d~~e~i~~~~~~~~-L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~ 169 (336)
+.+++|+++|.++|||....+|+|+|.+. ++++..++.+++|||.++-+...+...|++||+|++.+++-...+.|+++
T Consensus 57 L~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~ 136 (400)
T KOG0680|consen 57 LFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAF 136 (400)
T ss_pred eEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcch
Confidence 77889999999999999999999999742 35777899999999999999999999999999999999999999999998
Q ss_pred Hc----C-------CCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceec
Q psy3377 170 AN----G-------RATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAI 238 (336)
Q Consensus 170 s~----g-------~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v 238 (336)
-. . ..++||||+|++.|+|+|+++|.+..++++|+++||+.||++|++.++.|+++++. +...|
T Consensus 137 ~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd-----ET~vV 211 (400)
T KOG0680|consen 137 TKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD-----ETYVV 211 (400)
T ss_pred hhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc-----hhhhh
Confidence 61 1 23899999999999999999999999999999999999999999999999999873 44567
Q ss_pred cCCCCCcccccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCC------------------
Q psy3377 239 KDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPN------------------ 300 (336)
Q Consensus 239 ~~~~~~~~~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPD------------------ 300 (336)
+++ ||++| ||+.||++.+......+ + .+.....|.|||
T Consensus 212 Nei-------KEdvc------------fVSqnF~~~m~~~~~k~-~----~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~ 267 (400)
T KOG0680|consen 212 NEI-------KEDVC------------FVSQNFKEDMDIAKTKF-Q----ENKVMIDYVLPDFSTSKRGYVRNEDVKLPE 267 (400)
T ss_pred hhh-------hhheE------------EechhhHHHHHHHhhcc-c----cceeEEEEecCCcccccceeEecCCCCCCC
Confidence 888 99999 88888888876543321 1 112246788886
Q ss_pred -cceeeecCcccccccccccccccCCCCCCCCCCC
Q psy3377 301 -GYHQDFGCRALPYSRGSVVQNIANMQPGSGISPT 334 (336)
Q Consensus 301 -g~~i~l~~Erf~~~E~lF~p~~~~~~~~~gi~~~ 334 (336)
-|.|+|++|||.+||+||+|+++|++ ++||.+.
T Consensus 268 d~qii~L~nErF~IPEilF~Psdi~I~-q~GIpEA 301 (400)
T KOG0680|consen 268 DEQIITLTNERFTIPEILFSPSDIGIQ-QPGIPEA 301 (400)
T ss_pred CcceeeecccccccchhhcChhhcCcc-cCCchHH
Confidence 46789999999999999999999999 9999874
No 14
>KOG0678|consensus
Probab=100.00 E-value=1.3e-42 Score=312.02 Aligned_cols=284 Identities=27% Similarity=0.380 Sum_probs=222.6
Q ss_pred ceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeEE
Q psy3377 14 GALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEI 93 (336)
Q Consensus 14 ~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~l 93 (336)
.++|+|+|++++|.||||...|++++|++++......... ...-+...+..+.++++|++++. +..+.+
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~---------~~~~~~~~~~~dldf~ig~eal~--~~~ysl 73 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSS---------KATRRVKRGTEDLDFFIGDEALD--ATTYSL 73 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEecccccccc---------chhhhhhccccccceecccHHHh--hccccc
Confidence 3599999999999999999999999999998763322110 00001111233578999999976 568899
Q ss_pred eccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcC-
Q psy3377 94 QSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANG- 172 (336)
Q Consensus 94 ~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g- 172 (336)
.+|+++|.+.|||.||++|+..+.+.|+.+|++|-.|||||++++++.|+.++|++||+|++|.+|++-+++||+-++-
T Consensus 74 ~ypiRhg~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswt 153 (415)
T KOG0678|consen 74 KYPIRHGQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWT 153 (415)
T ss_pred ccceeccccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred -------CCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCc
Q psy3377 173 -------RATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPK 245 (336)
Q Consensus 173 -------~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~ 245 (336)
.-||+|||.|.+.|+|+||.|||++.++++.++++|+++|.+++++|++++....+.. ..+..+.+
T Consensus 154 s~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~---sl~tak~i---- 226 (415)
T KOG0678|consen 154 SRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQ---SLETAKAI---- 226 (415)
T ss_pred HhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHH---hhhhhHHH----
Confidence 3599999999999999999999999999999999999999999999998877655432 23444555
Q ss_pred ccccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcc-hhhhcCCCCeEEECCCcceeeecCcccccccccccccccC
Q psy3377 246 WTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFD-EKSILNLPPSHYEFPNGYHQDFGCRALPYSRGSVVQNIAN 324 (336)
Q Consensus 246 ~~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~-~~~~~~~~~~~y~LPDg~~i~l~~Erf~~~E~lF~p~~~~ 324 (336)
||++| |+..|+-.+.++.-..|.. ..+...... .--...+++++.|||+.||++|+|....
T Consensus 227 ---Ke~yc------------y~cPdivkef~k~d~ep~K~ikq~~~~~~---i~~~~~~vDvgyerFlgpEiff~Pe~a~ 288 (415)
T KOG0678|consen 227 ---KEKYC------------YTCPDIVKEFAKYDREPAKWIKQYTGINV---ITGKKFVVDVGYERFLGPEIFFHPEFAN 288 (415)
T ss_pred ---Hhhhc------------ccCcHHHHHHHHhccCHHHHHHHHhccch---hcCCceeecccHHhhcChhhhcCccccC
Confidence 99999 6666665555544322210 000000000 0001235788999999999999999998
Q ss_pred CCCCCCCCC
Q psy3377 325 MQPGSGISP 333 (336)
Q Consensus 325 ~~~~~gi~~ 333 (336)
.+....|++
T Consensus 289 ~d~~~~~~~ 297 (415)
T KOG0678|consen 289 PDFLTPLSE 297 (415)
T ss_pred CccCcchHH
Confidence 776555544
No 15
>KOG0681|consensus
Probab=100.00 E-value=2.2e-36 Score=286.93 Aligned_cols=223 Identities=21% Similarity=0.353 Sum_probs=180.1
Q ss_pred CceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeE
Q psy3377 13 IGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGME 92 (336)
Q Consensus 13 ~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 92 (336)
..|||||+||+.+||||+|+..|+++|++++.+++++.-.. .-.+||............
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~---------------------s~t~vgnd~~~~~~~Rs~ 81 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGA---------------------SVTLVGNDILNFQGVRSS 81 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhcccccccccc---------------------ccccccchhhhhhhhhcc
Confidence 45899999999999999999999999999999998654221 011466654333322345
Q ss_pred EeccccCCcccCHHHHHHHHHHHhhcccCCCC--CCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHH
Q psy3377 93 IQSYMKEGMIEDWDLFEKVLDYTYSKCIESGS--EYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFA 170 (336)
Q Consensus 93 l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~--~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s 170 (336)
.++|+++.+|+||+.+|.|++|+|. +|+++. -+||+++||+.++|...|++|+|+|||.||||+|.+.-+++.|+|-
T Consensus 82 ~rSPFd~nVvtNwel~E~ilDY~F~-~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h 160 (645)
T KOG0681|consen 82 PRSPFDRNVVTNWELMEQILDYIFG-KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH 160 (645)
T ss_pred CCCCCcCCccccHHHHHHHHHHHHH-hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh
Confidence 6899999999999999999999995 899988 4899999999999999999999999999999999999999999993
Q ss_pred -c---CCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCCccccceeccCCCCCcc
Q psy3377 171 -N---GRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKW 246 (336)
Q Consensus 171 -~---g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~v~~~~~~~~ 246 (336)
. +..+|+||++|++.|+|+||.||..+...++|+++||.+...||.+||+.+ |++.+... .....+.+
T Consensus 161 N~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~K-yp~~~~~~--t~sk~E~l----- 232 (645)
T KOG0681|consen 161 NYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLK-YPFHLNAF--TGSKAERL----- 232 (645)
T ss_pred ccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhcc-Cccchhhc--CHHHHHHH-----
Confidence 2 334799999999999999999999999999999999999999999998854 44433211 11222333
Q ss_pred cccCCCCCCChhhhhhhhhHHHHHHHHHhhhcc
Q psy3377 247 TRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVS 279 (336)
Q Consensus 247 ~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~ 279 (336)
+..+| |++.||++++..+.
T Consensus 233 --~~eHc------------yis~DY~eei~~~l 251 (645)
T KOG0681|consen 233 --LHEHC------------YISPDYREEIIKIL 251 (645)
T ss_pred --hhhhc------------eeCcchHHHHHHHh
Confidence 67799 55555555555443
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=7.2e-29 Score=235.39 Aligned_cols=180 Identities=18% Similarity=0.235 Sum_probs=153.3
Q ss_pred eEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhc---ccCCe
Q psy3377 15 ALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYV---ARKGM 91 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~---~~~~~ 91 (336)
.|+||+||.++|+|++|+. +.+.+||+|+..... ++..++|++|... .+...
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~------------------------~~~~~vG~~A~~~~~~~~~~~ 64 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT------------------------GKVLAVGEEAKEMLGRTPGNI 64 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC------------------------CeEEEEcHHHHHhhhcCCCCe
Confidence 3999999999999999775 577789999876531 1356899998643 24568
Q ss_pred EEeccccCCcccCHHHHHHHHHHHhhcccCCCC-CCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHH
Q psy3377 92 EIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGS-EYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFA 170 (336)
Q Consensus 92 ~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~-~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s 170 (336)
++.+|+++|.|.|||.++.+|+|++.+.+...+ ..++++++.|...+...|+.+.+ +||.++++.++++++|++|+|+
T Consensus 65 ~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a 143 (335)
T PRK13930 65 EAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIG 143 (335)
T ss_pred EEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHh
Confidence 899999999999999999999999965444333 46889999999988888877766 7999999999999999999999
Q ss_pred cCC-----CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhC
Q psy3377 171 NGR-----ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 171 ~g~-----~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
+|. ++++|||+|++.|++++|.+|.++. ....++||+++|++|.++|.++
T Consensus 144 ~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~ 198 (335)
T PRK13930 144 AGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRK 198 (335)
T ss_pred cCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHH
Confidence 997 5789999999999999999999884 6778999999999999999764
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=3.1e-28 Score=231.06 Aligned_cols=178 Identities=20% Similarity=0.276 Sum_probs=150.5
Q ss_pred eEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcc---cCCe
Q psy3377 15 ALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVA---RKGM 91 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~---~~~~ 91 (336)
.|+||+||.++|+|++|++. .+.+||+|+.+.... +.+++|+++.... +..+
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~------------------------~~~~vG~~a~~~~~~~~~~~ 61 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTK------------------------KVLAVGEEAKQMLGRTPGNI 61 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCC------------------------eEEEecHHHHHHhhcCCCCE
Confidence 49999999999999999876 678999999875421 3568999986432 4678
Q ss_pred EEeccccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHc
Q psy3377 92 EIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN 171 (336)
Q Consensus 92 ~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~ 171 (336)
.+.+|+++|.|.|||.++.+|++++.+.++. +.++|.+++..|.+....++++++.+||.++++.++++++|++|+|++
T Consensus 62 ~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~ 140 (334)
T PRK13927 62 VAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA 140 (334)
T ss_pred EEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc
Confidence 8999999999999999999999999877776 666754444444667777778899999999999999999999999999
Q ss_pred CC-----CeEEEEeeCCCcEEEEEE-eCCEEeccceEEecchHHHHHHHHHHHHHh
Q psy3377 172 GR-----ATGLVFDSGATHTSAIPV-HDGYVLTHAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 172 g~-----~tglVVDiG~~~t~v~pV-~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
|. +.++|||+|+++|+++++ ++|+...+. .++||+++|++|.++|.+
T Consensus 141 g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~ 193 (334)
T PRK13927 141 GLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRR 193 (334)
T ss_pred CCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHH
Confidence 97 457999999999999999 788877654 479999999999999874
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.92 E-value=1.6e-24 Score=205.56 Aligned_cols=182 Identities=17% Similarity=0.257 Sum_probs=147.6
Q ss_pred EEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhc---ccCCeE
Q psy3377 16 LVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYV---ARKGME 92 (336)
Q Consensus 16 vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~---~~~~~~ 92 (336)
|-||+||.++++-..+ ..-.+..||+++......+. .++-+++|++|... ....+.
T Consensus 5 ~giDlGt~~s~i~~~~-~~~~~~~psvv~~~~~~~~~--------------------~~~~~~vG~~A~~~~~~~~~~~~ 63 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG-RGIVLNEPSVVAIRTDRDAK--------------------TKSILAVGHEAKEMLGKTPGNIV 63 (333)
T ss_pred eEEecCcceEEEEECC-CCEEEecCCEEEEecCCCCC--------------------CCeEEEEhHHHHHhhhcCCCCEE
Confidence 8899999999985433 33345679988876442110 01347799998653 136888
Q ss_pred EeccccCCcccCHHHHHHHHHHHhhcccCCCCCCC-ceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHc
Q psy3377 93 IQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYH-PVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN 171 (336)
Q Consensus 93 l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~-pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~ 171 (336)
+.+|+++|.|.||+.++.+|+|++.+.+......+ +++++.|+..+...|+. ++.+||.++++.++++++|++|+|++
T Consensus 64 ~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~ 142 (333)
T TIGR00904 64 AIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGA 142 (333)
T ss_pred EEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhc
Confidence 99999999999999999999999987665432233 69999999999998887 57789999999999999999999999
Q ss_pred CC-----CeEEEEeeCCCcEEEEEE-eCCEEeccceEEecchHHHHHHHHHHHHHhC
Q psy3377 172 GR-----ATGLVFDSGATHTSAIPV-HDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 172 g~-----~tglVVDiG~~~t~v~pV-~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
|. ++++|||+|++.|++++| ++|+.+.+. .++||+++|+.|.+++.++
T Consensus 143 g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 143 GLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred CCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHH
Confidence 97 689999999999999999 888877654 4799999999999998743
No 19
>KOG0797|consensus
Probab=99.92 E-value=5.6e-24 Score=201.44 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=161.6
Q ss_pred CeEEeccccCCcccC----------HHHHHHHHHHHhhcccCCCCC---CCceEEEeCCCCCHHHHHHHHHHHHhhcCCC
Q psy3377 90 GMEIQSYMKEGMIED----------WDLFEKVLDYTYSKCIESGSE---YHPVLMSEAPWNIRSKREKLLELMFEKYNVP 156 (336)
Q Consensus 90 ~~~l~~pi~~G~i~n----------~d~~e~i~~~~~~~~L~~~~~---~~pvllte~~~~~~~~r~~l~e~lFE~~~vp 156 (336)
.+.+.+||++|...- .+++.+||+|++.+.|++.+. .+.++++.|-...+..-+.+..++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 688999999997643 467899999999999999874 6788888888888999999999999999999
Q ss_pred eEEEehhHHHHHHHcCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCcccCCCC--cccc
Q psy3377 157 AFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPY--MVGG 234 (336)
Q Consensus 157 ~v~~~~~~~la~~s~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~~~~~~~--~~~~ 234 (336)
++.++.++++++|++|.++++|||||+..|+|+||-||.+++++..++++||.+|++.|..+|.+.++++..-. .-.+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998877654110 0012
Q ss_pred ceeccCCCCCcccccCCCCCCChhhhhhhhhHHHHHHHHHhhhccCCCcchhhhcCCCCeEEECCCc----ceeeecCcc
Q psy3377 235 KEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG----YHQDFGCRA 310 (336)
Q Consensus 235 ~~~v~~~~~~~~~~Ke~~c~~~~s~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~LPDg----~~i~l~~Er 310 (336)
..+++++ ||+.|+...+-.. +. ...-.|+=||+ +++.++.|.
T Consensus 338 ~lLl~~L-------Ke~Fc~l~~a~~~----------------vQ-----------~~~F~~R~pn~~~~kytfk~~DE~ 383 (618)
T KOG0797|consen 338 WLLLNQL-------KEKFCHLRAAELG----------------VQ-----------LTVFSYREPNPPTLKYTFKLGDEV 383 (618)
T ss_pred HHHHHHH-------HHHhccccHhhhh----------------hh-----------hhhhhccCCCCcceeeeeeccchh
Confidence 2223333 7777743332210 00 00112333443 346789999
Q ss_pred cccccccccccccCCC
Q psy3377 311 LPYSRGSVVQNIANMQ 326 (336)
Q Consensus 311 f~~~E~lF~p~~~~~~ 326 (336)
.++|-.||.|++.++.
T Consensus 384 mlAPlaLF~P~lf~~~ 399 (618)
T KOG0797|consen 384 MLAPLALFYPNLFVIE 399 (618)
T ss_pred hccchhhhhhhhhhcc
Confidence 9999999999999988
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.91 E-value=4e-24 Score=202.92 Aligned_cols=177 Identities=21% Similarity=0.289 Sum_probs=146.7
Q ss_pred eEEEecCCceEEEeeeCCCCCe-EEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcc---cCC
Q psy3377 15 ALVFDVGSQSLRVGYAQEDSPK-AEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVA---RKG 90 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age~~P~-~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~---~~~ 90 (336)
.|-||+||.++++ |... .+. ...||+++...... .-.++|++|.... ..+
T Consensus 6 ~~giDlGt~~~~i-~~~~-~~~~~~~ps~va~~~~~~------------------------~~~~vG~~A~~~~~~~p~~ 59 (335)
T PRK13929 6 EIGIDLGTANILV-YSKN-KGIILNEPSVVAVDTETK------------------------AVLAIGTEAKNMIGKTPGK 59 (335)
T ss_pred eEEEEcccccEEE-EECC-CcEEecCCcEEEEECCCC------------------------eEEEeCHHHHHhhhcCCCc
Confidence 4899999999998 4433 233 34788887653311 2357999986432 357
Q ss_pred eEEeccccCCcccCHHHHHHHHHHHhhc---ccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHH
Q psy3377 91 MEIQSYMKEGMIEDWDLFEKVLDYTYSK---CIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLA 167 (336)
Q Consensus 91 ~~l~~pi~~G~i~n~d~~e~i~~~~~~~---~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la 167 (336)
+.+.+|+++|.|.|||.++.+|+|++.+ .++..++.++++++.|+..+..+|+.+.+ +||.+|++.++++.+|++|
T Consensus 60 ~~~~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aa 138 (335)
T PRK13929 60 IVAVRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAA 138 (335)
T ss_pred EEEEecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHH
Confidence 8889999999999999999999999973 57777777899999999999999999988 9999999999999999999
Q ss_pred HHHcC-----CCeEEEEeeCCCcEEEEEE-eCCEEeccceEEecchHHHHHHHHHHHHHh
Q psy3377 168 AFANG-----RATGLVFDSGATHTSAIPV-HDGYVLTHAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 168 ~~s~g-----~~tglVVDiG~~~t~v~pV-~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
++++| ..+++|||+|+++|++++| ++|.... ...++||+++|++|.++|.+
T Consensus 139 a~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~ 195 (335)
T PRK13929 139 AIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRK 195 (335)
T ss_pred HHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHH
Confidence 99997 5689999999999999999 5555543 34679999999999999875
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.82 E-value=5.9e-19 Score=167.66 Aligned_cols=177 Identities=18% Similarity=0.263 Sum_probs=142.8
Q ss_pred EEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcc---cCCeE
Q psy3377 16 LVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVA---RKGME 92 (336)
Q Consensus 16 vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~---~~~~~ 92 (336)
+-||+|+.++++-.. ++.-.+..||++......+ .-+++|++|.... .....
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~~------------------------~i~~vG~~A~~~~~~~p~~~~ 60 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNTN------------------------KVLAVGEEARRMVGRTPGNIV 60 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEccCCEEEEECCCC------------------------eEEEecHHHHHhhhcCCCCEE
Confidence 899999999999554 3333445788887664321 2357899875432 25777
Q ss_pred EeccccCCcccCHHHHHHHHHHHhhcccCCC-CCCCc-eEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHH
Q psy3377 93 IQSYMKEGMIEDWDLFEKVLDYTYSKCIESG-SEYHP-VLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFA 170 (336)
Q Consensus 93 l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~-~~~~p-vllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s 170 (336)
+.+|+++|.|.|||.++.+|+|++. ++... +.++| ++++.|.. ....+++.++.+||.+|++.+.++++|++|+++
T Consensus 61 ~~~pi~~G~i~d~~~~~~~l~~~~~-~~~~~~~~~~p~~vitvP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~ 138 (336)
T PRK13928 61 AIRPLRDGVIADYDVTEKMLKYFIN-KACGKRFFSKPRIMICIPTG-ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIG 138 (336)
T ss_pred EEccCCCCeEecHHHHHHHHHHHHH-HHhccCCCCCCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCceEecccHHHHHHH
Confidence 8899999999999999999999995 45433 45777 88888555 556677888999999999999999999999999
Q ss_pred cCC-----CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHh
Q psy3377 171 NGR-----ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 171 ~g~-----~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
+|. ..++|||+|+++|++++|..|..+.. ..+++||+++|+.|.+.+.+
T Consensus 139 ~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 139 AGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred cCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHH
Confidence 997 67999999999999999999987743 46899999999999999874
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.78 E-value=2e-17 Score=155.01 Aligned_cols=181 Identities=19% Similarity=0.322 Sum_probs=139.0
Q ss_pred ceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhc---ccCC
Q psy3377 14 GALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYV---ARKG 90 (336)
Q Consensus 14 ~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~---~~~~ 90 (336)
+-+-||+||.++++ |..+..=.+..||+++...... +-..+|++|... ...+
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~~------------------------~i~avG~~A~~m~gktp~~ 56 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDTG------------------------KILAVGDEAKAMLGKTPDN 56 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT--------------------------EEEESHHHHTTTTS-GTT
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCCC------------------------eEEEEhHHHHHHhhcCCCc
Confidence 35789999999999 5555555567899999876532 345689998532 2568
Q ss_pred eEEeccccCCcccCHHHHHHHHHHHhhcccCC-CCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHH
Q psy3377 91 MEIQSYMKEGMIEDWDLFEKVLDYTYSKCIES-GSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAF 169 (336)
Q Consensus 91 ~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~-~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~ 169 (336)
+.+.+|+++|+|.|++..+.+++|++.+.++- ......++++.|.-.+...|+.+.+.+- ..++..++++++|+++++
T Consensus 57 i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAi 135 (326)
T PF06723_consen 57 IEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAI 135 (326)
T ss_dssp EEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHH
T ss_pred cEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHh
Confidence 99999999999999999999999999866664 3345568899999999999999988775 689999999999999999
Q ss_pred HcCCC-----eEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhC
Q psy3377 170 ANGRA-----TGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 170 s~g~~-----tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
++|.. ..+|||+|+++|.++-+..|.++ ..+.+++||+++++.+.++++++
T Consensus 136 GaGl~i~~~~g~miVDIG~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~ 191 (326)
T PF06723_consen 136 GAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREK 191 (326)
T ss_dssp HTT--TTSSS-EEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCceEEEEECCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHh
Confidence 99853 57999999999999999999998 67888999999999999999865
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.56 E-value=2.5e-13 Score=124.17 Aligned_cols=183 Identities=19% Similarity=0.299 Sum_probs=143.0
Q ss_pred ceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhc---ccCC
Q psy3377 14 GALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYV---ARKG 90 (336)
Q Consensus 14 ~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~---~~~~ 90 (336)
..|-||+|+.+|++ |.-...--...||+|+....... +.-..+|++|..- ..++
T Consensus 7 ~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~~~----------------------~~v~aVG~eAK~MlGrTP~n 63 (342)
T COG1077 7 NDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEGKT----------------------KVVLAVGEEAKQMLGRTPGN 63 (342)
T ss_pred ccceeeecccceEE-EEcCceEEecCceEEEEeecCCC----------------------ceEEEehHHHHHHhccCCCC
Confidence 36899999999999 33344445667888887764111 1356799998542 2467
Q ss_pred eEEeccccCCcccCHHHHHHHHHHHhhcccCCCC--CCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHH
Q psy3377 91 MEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGS--EYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAA 168 (336)
Q Consensus 91 ~~l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~--~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~ 168 (336)
....+|+++|+|.|++..+.+++|+.++..+-.. ..-.++++.|.-.+...|+.+-|.+ ++-+...+++++.|++|+
T Consensus 64 i~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAA 142 (342)
T COG1077 64 IVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAA 142 (342)
T ss_pred ceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHH
Confidence 8889999999999999999999999865443222 2334777777777777777776555 567889999999999999
Q ss_pred HHcCC-----CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhC
Q psy3377 169 FANGR-----ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 169 ~s~g~-----~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
+++|. +-.+|||||.++|.|.-|..|-.+ ....+.+||+.+++.+.++++++
T Consensus 143 IGaglpi~ep~G~mvvDIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~ 199 (342)
T COG1077 143 IGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKK 199 (342)
T ss_pred hcCCCcccCCCCCEEEEeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHH
Confidence 99986 348999999999999999998888 56677899999999999999864
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.14 E-value=1.5e-09 Score=98.21 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=102.3
Q ss_pred eccccCCcccCHHHHHHHHHHHhhc---ccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHH
Q psy3377 94 QSYMKEGMIEDWDLFEKVLDYTYSK---CIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFA 170 (336)
Q Consensus 94 ~~pi~~G~i~n~d~~e~i~~~~~~~---~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s 170 (336)
..|+++|.|.|++..+.+++++... .++. .-..++++.|...+..+|+.+. -.++..|+.-+.+..++++++.+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~~~~r~a~~-~a~~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTIEGDPKVIV-NVIESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCCcccHHHHH-HHHHHcCCceEEEeehHHHHHHH
Confidence 4789999999999999999999842 2332 3457899999888888887654 55667899999999999999999
Q ss_pred cCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHH
Q psy3377 171 NGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQ 220 (336)
Q Consensus 171 ~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~ 220 (336)
++....+|||+|++.|.++-+.+|.++ ..+..++||+++|+.+.+.+.
T Consensus 105 ~~~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~~ 152 (239)
T TIGR02529 105 LQIKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAYG 152 (239)
T ss_pred hcCCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHhC
Confidence 888778999999999999999999887 466789999999998876653
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.01 E-value=2.6e-08 Score=91.71 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=100.1
Q ss_pred eccccCCcccCHHHHHHHHHHHhhc---ccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHH
Q psy3377 94 QSYMKEGMIEDWDLFEKVLDYTYSK---CIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFA 170 (336)
Q Consensus 94 ~~pi~~G~i~n~d~~e~i~~~~~~~---~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s 170 (336)
..++++|.|.|++.....++++... .+++. -..++++.|......+|..+. -..+..|+.-..++.++.+++.+
T Consensus 55 ~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~ 131 (267)
T PRK15080 55 ADVVRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAV 131 (267)
T ss_pred ccccCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHH
Confidence 5688999999999999999988752 34443 345667888877666676665 77788899988899999999998
Q ss_pred cCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHH
Q psy3377 171 NGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQ 220 (336)
Q Consensus 171 ~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~ 220 (336)
.+...++|||+|+++|.++-+.+|.++ .....++||+++|+.|.+.+.
T Consensus 132 ~~~~~~~vvDIGggtt~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l~ 179 (267)
T PRK15080 132 LGIDNGAVVDIGGGTTGISILKDGKVV--YSADEPTGGTHMSLVLAGAYG 179 (267)
T ss_pred hCCCCcEEEEeCCCcEEEEEEECCeEE--EEecccCchHHHHHHHHHHhC
Confidence 887778999999999999999999887 346789999999999987763
No 26
>CHL00094 dnaK heat shock protein 70
Probab=98.74 E-value=5.4e-07 Score=92.56 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=84.4
Q ss_pred ccCHHHHHHHHHHHhh---cccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----
Q psy3377 102 IEDWDLFEKVLDYTYS---KCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR----- 173 (336)
Q Consensus 102 i~n~d~~e~i~~~~~~---~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~----- 173 (336)
+..-+....+++++.. ..++. .-..+++|.|...+..+|+.+.+. .+..|+.-+.++++|.+|++++|.
T Consensus 110 ~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~ 186 (621)
T CHL00094 110 FSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNN 186 (621)
T ss_pred EcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCC
Confidence 3344555566666553 22332 224688899999998888877655 577899999999999999998874
Q ss_pred CeEEEEeeCCCcEEEEEEeCCEE---eccceEEecchHHHHHHHHHHHHHh
Q psy3377 174 ATGLVFDSGATHTSAIPVHDGYV---LTHAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 174 ~tglVVDiG~~~t~v~pV~dG~~---~~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
..-+|+|+|++++.|+-+-.+.. +.......++||+++++.|.+++.+
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHH
Confidence 36799999999999987754321 1122234689999999999887753
No 27
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.68 E-value=1e-06 Score=91.10 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=85.4
Q ss_pred cccCHHHHHHHHHHHhh---cccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC----
Q psy3377 101 MIEDWDLFEKVLDYTYS---KCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR---- 173 (336)
Q Consensus 101 ~i~n~d~~e~i~~~~~~---~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~---- 173 (336)
.+...+....+|+++.. ..++. .-..++||.|.+.+..+|+.+.+ ..+..|+.-+.++++|.+|++++|.
T Consensus 146 ~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~ 222 (673)
T PLN03184 146 QFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKS 222 (673)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCC
Confidence 34445556666766653 22332 23579999999999998877654 6678899999999999999998764
Q ss_pred -CeEEEEeeCCCcEEEEEEeCC--EE-eccceEEecchHHHHHHHHHHHHHh
Q psy3377 174 -ATGLVFDSGATHTSAIPVHDG--YV-LTHAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 174 -~tglVVDiG~~~t~v~pV~dG--~~-~~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
..-+|+|+|++++.|+-+--+ .. +..+..-.++||.++++.|.+++.+
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 367999999999998766432 21 1112223589999999999988754
No 28
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.65 E-value=1.2e-06 Score=89.47 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhh---cccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeE
Q psy3377 105 WDLFEKVLDYTYS---KCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATG 176 (336)
Q Consensus 105 ~d~~e~i~~~~~~---~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tg 176 (336)
.+....+++++.. +.++.. -..+++|.|.+.+..+|+.+.+. .+..|+.-+.++++|.+|++++|. .+-
T Consensus 107 ~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~v 183 (599)
T TIGR01991 107 VEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIY 183 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEE
Confidence 3444555555442 234432 35799999999999999887554 678999999999999999988763 467
Q ss_pred EEEeeCCCcEEEEEEe--CCEE-eccceEEecchHHHHHHHHHHHHHhC
Q psy3377 177 LVFDSGATHTSAIPVH--DGYV-LTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 177 lVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
+|+|+|++++.|+-+- +|.. +.....-..+||.++++.|.+++.++
T Consensus 184 lV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 184 AVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred EEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999987653 3332 11122235899999999999998643
No 29
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.59 E-value=2.1e-06 Score=88.65 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEe--CCEE-ec
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVH--DGYV-LT 198 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~--dG~~-~~ 198 (336)
..++||.|.+.+..+|+.+.+. .+..|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+- +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 4699999999999999876554 578899999999999999998874 4689999999999887654 3322 22
Q ss_pred cceEEecchHHHHHHHHHHHHHh
Q psy3377 199 HAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 199 ~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
.+..-..+||.++++.|.+++.+
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHH
Confidence 22233579999999999887753
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.58 E-value=1.9e-06 Score=89.06 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=75.9
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEe--CCEEe-
Q psy3377 126 YHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVH--DGYVL- 197 (336)
Q Consensus 126 ~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~--dG~~~- 197 (336)
-..++||.|.+.+..+|+.+. -..+..|+.-+.++++|.+|++++|. ..-+|+|+|++++.|+-+- +|..-
T Consensus 174 v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATK-DAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 357999999999999888775 46677899999999999999999875 3689999999999998653 45432
Q ss_pred ccceEEecchHHHHHHHHHHHHHh
Q psy3377 198 THAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 198 ~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
.....-..+||+++++.|.+++.+
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHH
Confidence 222333589999999999988754
No 31
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.58 E-value=2.9e-06 Score=87.02 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhh---cccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEE
Q psy3377 106 DLFEKVLDYTYS---KCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGL 177 (336)
Q Consensus 106 d~~e~i~~~~~~---~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tgl 177 (336)
+....+++++.. +.++. .-..+++|.|.+.+..+|+.+ .-..+..|+.-+.++++|.+|++++|. .+-+
T Consensus 128 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~-~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 204 (616)
T PRK05183 128 EVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQAT-KDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIA 204 (616)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHH-HHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEE
Confidence 444455555542 23332 235789999999999988877 555788999999999999999988763 3578
Q ss_pred EEeeCCCcEEEEEEe--CCEE-eccceEEecchHHHHHHHHHHHHHhC
Q psy3377 178 VFDSGATHTSAIPVH--DGYV-LTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 178 VVDiG~~~t~v~pV~--dG~~-~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
|+|+|++++.|+.+- .|.. +..+..-..+||.++++.|.+++.++
T Consensus 205 V~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 205 VYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred EEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 999999999987664 3322 12222335799999999999988653
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.57 E-value=1.8e-06 Score=88.41 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=72.8
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC------CeEEEEeeCCCcEEEEEEe--CCEE-e
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR------ATGLVFDSGATHTSAIPVH--DGYV-L 197 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~------~tglVVDiG~~~t~v~pV~--dG~~-~ 197 (336)
..+++|.|.+.+..+|+.+.+ ..+..|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+- +|.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 468999999999999888755 5667899999999999999988753 4679999999999887653 2322 2
Q ss_pred ccceEEecchHHHHHHHHHHHHHh
Q psy3377 198 THAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 198 ~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
........+||.++|+.|.+++.+
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHH
Confidence 222233579999999999887753
No 33
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.56 E-value=2.1e-06 Score=88.45 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=73.4
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEeCC--EE-ec
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVHDG--YV-LT 198 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~dG--~~-~~ 198 (336)
..+++|.|.+.+..+|+.+. -..+..|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+--+ .. +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATK-DAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 46899999999999888874 55577899999999999999998763 568999999999988765433 11 22
Q ss_pred cceEEecchHHHHHHHHHHHHHh
Q psy3377 199 HAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 199 ~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
.+....++||.++++.|.+++.+
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHH
Confidence 22233579999999999888753
No 34
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.55 E-value=1.9e-06 Score=88.97 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=72.8
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC------CeEEEEeeCCCcEEEEEEe--CCEE-e
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR------ATGLVFDSGATHTSAIPVH--DGYV-L 197 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~------~tglVVDiG~~~t~v~pV~--dG~~-~ 197 (336)
..++||.|.+.+..+|+.+.+ ..+..|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+- +|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 568999999999999988755 5677899999999999999998864 3579999999999887543 2322 2
Q ss_pred ccceEEecchHHHHHHHHHHHHHh
Q psy3377 198 THAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 198 ~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
..+..-..+||+++++.|.+++.+
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHH
Confidence 122223479999999999887753
No 35
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.46 E-value=6.7e-06 Score=84.96 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-------CeEEEEeeCCCcEEEEEEe--CCEEe
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-------ATGLVFDSGATHTSAIPVH--DGYVL 197 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-------~tglVVDiG~~~t~v~pV~--dG~~~ 197 (336)
..++||.|.+.+..+|+.+. -..+..|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+- +|..-
T Consensus 141 ~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATK-DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHH-HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 56999999999998887765 46678899999999999999998753 4689999999999887654 44322
Q ss_pred -ccceEEecchHHHHHHHHHHHHHh
Q psy3377 198 -THAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 198 -~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
.....-..+||+++++.|.+++.+
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHH
Confidence 111223579999999999888753
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.43 E-value=6.5e-06 Score=84.86 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEe--CCEEe-c
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVH--DGYVL-T 198 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~--dG~~~-~ 198 (336)
..+++|.|.+....+|+.+. -..+..|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+- +|..- .
T Consensus 161 ~~aVITVPayF~~~qR~at~-~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATK-DAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHH-HHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 46899999999988888764 45677899999999999999998874 4679999999999987764 55432 2
Q ss_pred cceEEecchHHHHHHHHHHHHHh
Q psy3377 199 HAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 199 ~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
.+..-..+||.++++.|.+++.+
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHH
Confidence 22234589999999999887754
No 37
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.39 E-value=4.5e-06 Score=78.94 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=119.8
Q ss_pred EecCCceEEEeeeC-CCCC-eEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCceEecchhhhcccCCeEEec
Q psy3377 18 FDVGSQSLRVGYAQ-EDSP-KAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQS 95 (336)
Q Consensus 18 iD~Gs~~~kaG~ag-e~~P-~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~l~~ 95 (336)
||+|-+++|+-+.+ +..+ +..|||.++......... .++....+.......+..|+||+.+.... . ....+
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~-----~~~~~~~~~~~v~~~g~~y~VG~~a~~~~-~-~~~~~ 74 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAW-----PGGSEARKTVCVPVGGLFYEVGPDVSLAA-D-TNRAR 74 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEccccccccccccccc-----ccccCCCceEEEEECCEEEEeccchhhcc-c-Cccce
Confidence 79999999986642 2233 478999887553322111 00000000001112357889998763211 1 01111
Q ss_pred cccCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCC-CCHHHHHHHHHHHHhh--------cCCCeEEEehhHHH
Q psy3377 96 YMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPW-NIRSKREKLLELMFEK--------YNVPAFFLVKNAVL 166 (336)
Q Consensus 96 pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~-~~~~~r~~l~e~lFE~--------~~vp~v~~~~~~~l 166 (336)
-+.+....+ +....++.+++.. .+.+ +-..|++--|. .-...|+.+.+.+-.. +.+..+.+.+|++.
T Consensus 75 ~~~~~~~~~-~~~~~L~~~Al~~-~~~~--~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~G 150 (320)
T TIGR03739 75 QLHDEYTET-PEYMALLRGALAL-SKVR--EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQG 150 (320)
T ss_pred eccccccCC-HHHHHHHHHHHHH-hcCC--CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChH
Confidence 222222222 4566777777642 3322 22234444343 3355677777766543 57788999999998
Q ss_pred HHHHc---------CCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhC
Q psy3377 167 AAFAN---------GRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 167 a~~s~---------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
|.+.. ...+.+|||+|+.+|.++.+-++.+.......++.|-..+.+.+.+.|.++
T Consensus 151 a~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 151 ALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred HHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 87754 334579999999999999888888888778789999999999999999754
No 38
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.38 E-value=1.6e-05 Score=81.20 Aligned_cols=114 Identities=15% Similarity=0.248 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhh---cccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEE
Q psy3377 106 DLFEKVLDYTYS---KCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGL 177 (336)
Q Consensus 106 d~~e~i~~~~~~---~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tgl 177 (336)
+....+++++-. ..++. .-..+++|.|.+.+..+|+.+.+ ..+..|+.-+.++++|.+|++++|. .+-+
T Consensus 120 ei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 196 (595)
T PRK01433 120 EIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVML-AAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYL 196 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHH-HHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEE
Confidence 444445555432 23432 23579999999999988888755 4678899999999999999999874 3568
Q ss_pred EEeeCCCcEEEEEEe--CCEE-eccceEEecchHHHHHHHHHHHHHhC
Q psy3377 178 VFDSGATHTSAIPVH--DGYV-LTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 178 VVDiG~~~t~v~pV~--dG~~-~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
|+|+|++++.|+-+- +|.. +...-.-..+||+++++.|.+++.++
T Consensus 197 V~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred EEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 999999999887653 4432 11112224799999999999988653
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.35 E-value=9.4e-06 Score=83.03 Aligned_cols=94 Identities=22% Similarity=0.272 Sum_probs=70.6
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC------CeEEEEeeCCCcEEEEEEe--CCEEe-
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR------ATGLVFDSGATHTSAIPVH--DGYVL- 197 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~------~tglVVDiG~~~t~v~pV~--dG~~~- 197 (336)
..+++|.|...+..+|+.+.+ ..+..|+.-+.+++.|.+|+++++. .+-+|+|+|++++.|+-+- +|..-
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~-Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRD-AAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHH-HHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccc-cccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 468999999999999888754 5567899889999999999987753 4789999999999877653 45432
Q ss_pred ccceEEecchHHHHHHHHHHHHHh
Q psy3377 198 THAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 198 ~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
........+||+++++.|.+++.+
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccccceecceeeccccc
Confidence 223344689999999999998864
No 40
>PRK11678 putative chaperone; Provisional
Probab=98.32 E-value=1.8e-05 Score=78.19 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=66.3
Q ss_pred CceEEEeCCCCC-----HHHHHH--HHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEeCC
Q psy3377 127 HPVLMSEAPWNI-----RSKREK--LLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVHDG 194 (336)
Q Consensus 127 ~pvllte~~~~~-----~~~r~~--l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~dG 194 (336)
..++|+.|.... ..+|+. ...-..+..|++.+.++++|.+|++++|. .+-+|+|+|.+++.++-|--+
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~ 229 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG 229 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence 568999998765 455543 34667788999999999999999999873 468999999999988766421
Q ss_pred -----------EEeccceEEecchHHHHHHHHH
Q psy3377 195 -----------YVLTHAIAKSPLGGDYLTMQCK 216 (336)
Q Consensus 195 -----------~~~~~~~~~~~iGG~~lt~~l~ 216 (336)
.++-++ -..+||+++++.|.
T Consensus 230 ~~~~~~~~r~~~vla~~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 230 PSWRGRADRSASLLGHS--GQRIGGNDLDIALA 260 (450)
T ss_pred CcccccCCcceeEEecC--CCCCChHHHHHHHH
Confidence 122111 13699999999996
No 41
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0001 Score=75.10 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=118.2
Q ss_pred CceEEEecCCceEEEeeeCCC-CCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCC-CceEecchhhhc----
Q psy3377 13 IGALVFDVGSQSLRVGYAQED-SPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASG-NKYFIDTNALYV---- 86 (336)
Q Consensus 13 ~~~vViD~Gs~~~kaG~age~-~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~---- 86 (336)
..+|-||+|+.++-+.+.... .|++ +++..+.+..+.. .. +.+ .+.++|..+...
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~v-i~n~~g~r~~PSv---------v~---------f~~~~~~~vG~~A~~q~~~~ 65 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKV-IENAEGERLTPSV---------VA---------FSKNGEVLVGQAAKRQAVDN 65 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceE-ecCCCCCcccceE---------EE---------ECCCCCEEecHHHHHHhhhC
Confidence 457999999999999999765 4654 4444443222111 00 111 146777766432
Q ss_pred ccC-CeEEeccccCC------------cccCHH-HHHHHHHHHhh---cccCCCCCCCceEEEeCCCCCHHHHHHHHHHH
Q psy3377 87 ARK-GMEIQSYMKEG------------MIEDWD-LFEKVLDYTYS---KCIESGSEYHPVLMSEAPWNIRSKREKLLELM 149 (336)
Q Consensus 87 ~~~-~~~l~~pi~~G------------~i~n~d-~~e~i~~~~~~---~~L~~~~~~~pvllte~~~~~~~~r~~l~e~l 149 (336)
+.. ...+++.+-++ .....+ ....++.++-. ..|+ ..-+.+++|.|.+....+|..+ .-.
T Consensus 66 p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at-~~A 142 (579)
T COG0443 66 PENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQAT-KDA 142 (579)
T ss_pred CcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHH-HHH
Confidence 111 22223332221 112222 22333443221 1232 2346799999999988887666 555
Q ss_pred HhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEeCC---EEeccceEEecchHHHHHHHHHHHHHh
Q psy3377 150 FEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVHDG---YVLTHAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 150 FE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~dG---~~~~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
....|++-+.+++.|.+|+|++|. .+=+|+|+|++++.|.-|-=+ +.+..+.....+||++++..|...+..
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 667899999999999999999985 478999999999998866543 223344556789999999999888754
No 42
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.11 E-value=9.1e-05 Score=70.75 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=113.6
Q ss_pred CceEEEecCCceEEEeeeCCCCCeEEccCCceeecCCCccccCCCCCCCCCCCCCCcccCCCCc---eEecchhhhcccC
Q psy3377 13 IGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGNK---YFIDTNALYVARK 89 (336)
Q Consensus 13 ~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~vG~~~~~~~~~ 89 (336)
+.++-||+|-++||.-+.. ....+||.++.........+ ..|+...+.....-.+.. |++|+++-....
T Consensus 2 ~~v~~iDiG~g~tK~~~~~---~~~~~ps~~~~~~~~~~~~~----~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~- 73 (344)
T PRK13917 2 VYVMALDFGNGFVKGKIND---EKFVIPSRYGRKTNENNQLS----GFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTN- 73 (344)
T ss_pred ceEEEEeccCCeEEEEecC---CCEEcceeccCCCCcccccc----ccCCCCCcceEEEecCcccccEEEcchhhhccc-
Confidence 3468899999999996542 12466887765532211110 001111110000111234 899988521110
Q ss_pred CeEEeccc-cCCcccCHHHHHHHHHHHhhcccCC--CCCCCceEE-EeCCCCC--HHHHHHHHHHHHhh-----------
Q psy3377 90 GMEIQSYM-KEGMIEDWDLFEKVLDYTYSKCIES--GSEYHPVLM-SEAPWNI--RSKREKLLELMFEK----------- 152 (336)
Q Consensus 90 ~~~l~~pi-~~G~i~n~d~~e~i~~~~~~~~L~~--~~~~~pvll-te~~~~~--~~~r~~l~e~lFE~----------- 152 (336)
....+. .+.... -+....++..++...+.. ..+...++| |--|... .+.++++.+.+-..
T Consensus 74 --~~~~~~~~~~~y~-~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~ 150 (344)
T PRK13917 74 --TGKDTYSTNDRYD-IKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVT 150 (344)
T ss_pred --ccCCccccccccc-chhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEE
Confidence 000011 111121 245667777665322221 112223333 4433322 22235565544222
Q ss_pred cCCCeEEEehhHHHHHHHcCC-------------CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHH
Q psy3377 153 YNVPAFFLVKNAVLAAFANGR-------------ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFL 219 (336)
Q Consensus 153 ~~vp~v~~~~~~~la~~s~g~-------------~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL 219 (336)
..+..+.+.+|++.|+|.... ..-+|||+|+.+|.++-+.++.+.......++.|...+-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 456778999999999875432 2459999999999999999999998888889999999999999999
Q ss_pred HhC
Q psy3377 220 QEN 222 (336)
Q Consensus 220 ~~~ 222 (336)
+++
T Consensus 231 ~~~ 233 (344)
T PRK13917 231 SKK 233 (344)
T ss_pred Hhh
Confidence 544
No 43
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.77 E-value=0.00026 Score=69.12 Aligned_cols=128 Identities=14% Similarity=0.162 Sum_probs=81.8
Q ss_pred EeccccCCcccCHHHHHHHHHHHhhcccCCCCCC--C-ceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEE-----EehhH
Q psy3377 93 IQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEY--H-PVLMSEAPWNIRSKREKLLELMFEKYNVPAFF-----LVKNA 164 (336)
Q Consensus 93 l~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~--~-pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~-----~~~~~ 164 (336)
+..|+......|-+.++.+.+.-| +.-++.|++ . -.++|-. .+..++-++..+.+ .+.+-.+. +--++
T Consensus 53 ~fTPl~~~~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~-~~~~~Nl~~~v~~~--~~~~gdfVVA~AG~~le~ 128 (475)
T PRK10719 53 YFTPLLKQGEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGE-TARKENAREVVMAL--SGSAGDFVVATAGPDLES 128 (475)
T ss_pred eecCCCCCccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEec-hhHHHHHHHHHHHh--cccccceeeeccCccHHH
Confidence 357887777789999999999988 477888753 3 3444443 33444444444431 11111111 11222
Q ss_pred HHHHHHcC--------CCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHH-----------HHHHHHhCCcc
Q psy3377 165 VLAAFANG--------RATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQ-----------CKQFLQENNID 225 (336)
Q Consensus 165 ~la~~s~g--------~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~-----------l~~lL~~~~~~ 225 (336)
+++.+|+| ....++||+|.++|+++-..+|.++ ....+++||+.+|.- .+.++.+.+.+
T Consensus 129 iva~~ASg~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~ 206 (475)
T PRK10719 129 IIAGKGAGAQTLSEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETDSQGRVTYISPPGQMILDELGLA 206 (475)
T ss_pred hhhHHHhhHHHhhhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEECCCCCEEEEChHHHHHHHHcCCC
Confidence 33334433 2577899999999999999999998 778899999988763 45555555554
Q ss_pred c
Q psy3377 226 I 226 (336)
Q Consensus 226 ~ 226 (336)
+
T Consensus 207 ~ 207 (475)
T PRK10719 207 I 207 (475)
T ss_pred c
Confidence 4
No 44
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.22 E-value=0.0048 Score=59.47 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHH
Q psy3377 138 IRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLT 212 (336)
Q Consensus 138 ~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt 212 (336)
++..-+.+.+ +++..|..-+.+..+|+++++++.. ...+|||+|+++|+++.+.+|.+. ..+.+++||+++|
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence 4444445444 5678899889999999999988643 257999999999999999999977 4677999999999
Q ss_pred HHHHHHH
Q psy3377 213 MQCKQFL 219 (336)
Q Consensus 213 ~~l~~lL 219 (336)
+.+.+.+
T Consensus 233 ~~i~~~l 239 (371)
T TIGR01174 233 KDIAKAL 239 (371)
T ss_pred HHHHHHh
Confidence 9987654
No 45
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.17 E-value=0.0028 Score=62.23 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-----CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHH
Q psy3377 138 IRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLT 212 (336)
Q Consensus 138 ~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-----~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt 212 (336)
++..-+.+.+ +++..|..-..++.+|++++++... ...+|||+|+++|.++-+.+|.++ ....+++||+++|
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 3444455544 6788899999999999999998753 357899999999999999999988 7888999999999
Q ss_pred HHHHHHH
Q psy3377 213 MQCKQFL 219 (336)
Q Consensus 213 ~~l~~lL 219 (336)
+.|.+.|
T Consensus 241 ~dIa~~l 247 (420)
T PRK09472 241 SDIAYAF 247 (420)
T ss_pred HHHHHHh
Confidence 9997665
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=96.67 E-value=0.032 Score=52.66 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=68.6
Q ss_pred HHHHHHhhcccCCCCCCCceEEEeCCC---CC--HHHHHHHHH----HHH-------hhcCCCeEEEehhHHHHHHHc--
Q psy3377 110 KVLDYTYSKCIESGSEYHPVLMSEAPW---NI--RSKREKLLE----LMF-------EKYNVPAFFLVKNAVLAAFAN-- 171 (336)
Q Consensus 110 ~i~~~~~~~~L~~~~~~~pvllte~~~---~~--~~~r~~l~e----~lF-------E~~~vp~v~~~~~~~la~~s~-- 171 (336)
-..+|++. .-++.+.+-.++++-|.- .. +..++.+.+ ++. +.+.+..+.+.+|++.|.|..
T Consensus 80 ~av~haL~-~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~ 158 (318)
T PF06406_consen 80 VAVHHALL-KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALM 158 (318)
T ss_dssp HHHHHHHH-HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHH
Confidence 34567775 457777776777777632 11 111222211 111 144577999999999998874
Q ss_pred ---CCCeEEEEeeCCCcEEEEEEeCCEEec-cceEEecchHHHHHHHHHHHHHhCC
Q psy3377 172 ---GRATGLVFDSGATHTSAIPVHDGYVLT-HAIAKSPLGGDYLTMQCKQFLQENN 223 (336)
Q Consensus 172 ---g~~tglVVDiG~~~t~v~pV~dG~~~~-~~~~~~~iGG~~lt~~l~~lL~~~~ 223 (336)
...+-+|||||+.+|.++-|..+.... .+....++|-..+.+.+.+.|.+.+
T Consensus 159 ~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~ 214 (318)
T PF06406_consen 159 DLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAG 214 (318)
T ss_dssp TS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--S
T ss_pred hhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhc
Confidence 235789999999999999887765543 3334568899999999999987643
No 47
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.51 E-value=0.039 Score=54.18 Aligned_cols=127 Identities=14% Similarity=0.217 Sum_probs=86.6
Q ss_pred eccccCCcccCHHHHHHHHHHHhhcccCCCCCC---CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEe-----hhHH
Q psy3377 94 QSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEY---HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLV-----KNAV 165 (336)
Q Consensus 94 ~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~---~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~-----~~~~ 165 (336)
..|+.+....|-+.+++|.+.-| +.-++.|++ -.|++|--.. -+++-+.+.+.|=+..| -|.++ -+++
T Consensus 51 fTPl~~~~~ID~~al~~iv~~eY-~~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aG--DFVVATAGPdLEsi 126 (473)
T PF06277_consen 51 FTPLLSQTEIDAEALKEIVEEEY-RKAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAG--DFVVATAGPDLESI 126 (473)
T ss_pred ccCCCCCCccCHHHHHHHHHHHH-HHcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcC--CEEEEccCCCHHHH
Confidence 57888888889999999999998 478888864 5788887654 33333344455544333 22222 2457
Q ss_pred HHHHHcCC--------CeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHH-----------HHHHHHHHHhCCccc
Q psy3377 166 LAAFANGR--------ATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYL-----------TMQCKQFLQENNIDI 226 (336)
Q Consensus 166 la~~s~g~--------~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~l-----------t~~l~~lL~~~~~~~ 226 (336)
+|..++|. ++-+=+|||.++|.++-.-+|.++ ...-+++||+.+ ..-++.++.+.+.++
T Consensus 127 iAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 127 IAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred HhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 77776662 344557999999999999999999 667789999743 344455555555443
No 48
>KOG0104|consensus
Probab=96.42 E-value=0.07 Score=54.70 Aligned_cols=95 Identities=23% Similarity=0.320 Sum_probs=72.5
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC----------CeEEEEeeCCCcEEEEEEeCCE
Q psy3377 126 YHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR----------ATGLVFDSGATHTSAIPVHDGY 195 (336)
Q Consensus 126 ~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~----------~tglVVDiG~~~t~v~pV~dG~ 195 (336)
=..+++|.|++..+..|+.+++.. .-.|..-++++++..++|..+|. +.-++-|+|.++|+++-|.--.
T Consensus 158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~ 236 (902)
T KOG0104|consen 158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL 236 (902)
T ss_pred hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence 356999999999999999887755 35677889999999999988763 4678889999999988775322
Q ss_pred Eec-------cceEE------ecchHHHHHHHHHHHHHh
Q psy3377 196 VLT-------HAIAK------SPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 196 ~~~-------~~~~~------~~iGG~~lt~~l~~lL~~ 221 (336)
+=. ..++. ..+||..+++.|..+|.+
T Consensus 237 v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 237 VKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred eccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 111 11221 258999999999999864
No 49
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=96.11 E-value=0.058 Score=51.36 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCeEEEehhHHHH--HHH-----c----CCC-eEEEEeeCCCcEEEEEEeCCEEeccceEEe
Q psy3377 137 NIRSKREKLLELMFEKYNVPAFFLVKNAVLA--AFA-----N----GRA-TGLVFDSGATHTSAIPVHDGYVLTHAIAKS 204 (336)
Q Consensus 137 ~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la--~~s-----~----g~~-tglVVDiG~~~t~v~pV~dG~~~~~~~~~~ 204 (336)
.++...+.+.++ |+..|+.-..+..++++. ++. . -+. +.++||+|++.|+++-+.+|.++ ..+.+
T Consensus 140 ~~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i 216 (348)
T TIGR01175 140 TRKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREV 216 (348)
T ss_pred ecHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEe
Confidence 366677777665 566666555555555544 342 1 122 48999999999999999999998 68899
Q ss_pred cchHHHHHHHHHHHH
Q psy3377 205 PLGGDYLTMQCKQFL 219 (336)
Q Consensus 205 ~iGG~~lt~~l~~lL 219 (336)
++||.++++.+.+.+
T Consensus 217 ~~G~~~i~~~i~~~~ 231 (348)
T TIGR01175 217 PFGTRQLTSELSRAY 231 (348)
T ss_pred echHHHHHHHHHHHc
Confidence 999999999887654
No 50
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=96.10 E-value=0.02 Score=55.93 Aligned_cols=78 Identities=22% Similarity=0.190 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcC-----CCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHH
Q psy3377 140 SKREKLLELMFEKYNVPAFFLVKNAVLAAFANG-----RATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQ 214 (336)
Q Consensus 140 ~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g-----~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~ 214 (336)
..-+.+ +-++|.-+..-..++-+|++++.+.= ....++||+|+++|++.-..+|.+. ....+++||+++|.-
T Consensus 165 ~~~~Nl-~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT~D 241 (418)
T COG0849 165 NILENL-EKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVTKD 241 (418)
T ss_pred HHHHHH-HHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHHHH
Confidence 334444 44556666666677777788877652 3478999999999999999999999 778899999999999
Q ss_pred HHHHHH
Q psy3377 215 CKQFLQ 220 (336)
Q Consensus 215 l~~lL~ 220 (336)
|.+-|.
T Consensus 242 Ia~~l~ 247 (418)
T COG0849 242 IAKGLK 247 (418)
T ss_pred HHHHhC
Confidence 988774
No 51
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.05 E-value=0.097 Score=52.58 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=56.6
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHc--------CCCeEEEEeeCCCcEEEEEEeCCEEeccceE
Q psy3377 131 MSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN--------GRATGLVFDSGATHTSAIPVHDGYVLTHAIA 202 (336)
Q Consensus 131 lte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~--------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~ 202 (336)
+.-+..-.-.+++.+++.+.+..|++ |-+++..-=|-|++ ...+++|||||.++|.++-+-+|.+. ...
T Consensus 82 vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~ 158 (496)
T PRK11031 82 VATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SLF 158 (496)
T ss_pred EEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--eee
Confidence 33334445566788888888888875 66665543333321 12358999999999999999888876 567
Q ss_pred EecchHHHHHHH
Q psy3377 203 KSPLGGDYLTMQ 214 (336)
Q Consensus 203 ~~~iGG~~lt~~ 214 (336)
.+++|.-.+++.
T Consensus 159 Sl~lG~vrl~e~ 170 (496)
T PRK11031 159 SLSMGCVTWLER 170 (496)
T ss_pred EEeccchHHHHH
Confidence 889998776643
No 52
>KOG0681|consensus
Probab=95.94 E-value=0.0011 Score=64.90 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=28.5
Q ss_pred ceeeecCcccccccccccccccCCCCCCCCCCC
Q psy3377 302 YHQDFGCRALPYSRGSVVQNIANMQPGSGISPT 334 (336)
Q Consensus 302 ~~i~l~~Erf~~~E~lF~p~~~~~~~~~gi~~~ 334 (336)
..+.++-||++|||++|+|+++|++ +.||.++
T Consensus 511 ~qlh~nVEriRvPEIiFqPsiiG~d-QaGl~Ei 542 (645)
T KOG0681|consen 511 YQLHLNVERIRVPEIIFQPSIIGID-QAGLAEI 542 (645)
T ss_pred hhhhhcceeeccceeeeccccccch-hhhHHHH
Confidence 3467899999999999999999999 9999764
No 53
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.87 E-value=0.1 Score=48.91 Aligned_cols=85 Identities=20% Similarity=0.066 Sum_probs=57.4
Q ss_pred CCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHH---H----cCCCeEEEEeeCCCcEEEEEEeCCEEec
Q psy3377 126 YHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAF---A----NGRATGLVFDSGATHTSAIPVHDGYVLT 198 (336)
Q Consensus 126 ~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~---s----~g~~tglVVDiG~~~t~v~pV~dG~~~~ 198 (336)
+..++-|. .+..-.+++.+++.+.+..|+ .+-+++..-=+.| + ....+++|||+|.++|.++-+-+|.+.
T Consensus 72 ~i~~vaTs-a~R~A~N~~~~~~~i~~~tgi-~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~- 148 (300)
T TIGR03706 72 EVRAVATA-ALRDAKNGPEFLREAEAILGL-PIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG- 148 (300)
T ss_pred eEEEEEcH-HHHcCCCHHHHHHHHHHHHCC-CeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-
Confidence 33444444 344456677888888887776 3566665544433 2 123457999999999999998888776
Q ss_pred cceEEecchHHHHHHH
Q psy3377 199 HAIAKSPLGGDYLTMQ 214 (336)
Q Consensus 199 ~~~~~~~iGG~~lt~~ 214 (336)
....+++|.-.|++.
T Consensus 149 -~~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 149 -EGVSLPLGCVRLTEQ 163 (300)
T ss_pred -EEEEEccceEEhHHh
Confidence 566788888777665
No 54
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.83 E-value=0.46 Score=44.56 Aligned_cols=43 Identities=33% Similarity=0.496 Sum_probs=38.4
Q ss_pred EEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHH
Q psy3377 176 GLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQ 220 (336)
Q Consensus 176 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~ 220 (336)
.+|+|||+..|.+.-+++|+++ ..+..++||+.+++.+.+...
T Consensus 195 vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~i~r~~~ 237 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQEIQRAYS 237 (354)
T ss_pred heeeeecccceEEEEEECCeee--eEeeccCcHHHHHHHHHHHhC
Confidence 3589999999999999999999 678899999999999887643
No 55
>KOG0101|consensus
Probab=95.48 E-value=0.45 Score=48.51 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=69.7
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC-------CeEEEEeeCCCcEEEEEEeC--CE-E
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR-------ATGLVFDSGATHTSAIPVHD--GY-V 196 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~-------~tglVVDiG~~~t~v~pV~d--G~-~ 196 (336)
..+++|.|......+|+.+ +-.-...|++.+.+++.|.+++.++|. .+=+|.|.|.+...|.++.- |. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at-~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAAT-KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHH-HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 4688999988888777665 444556788999999999999998873 35599999999988876643 42 2
Q ss_pred eccceEEecchHHHHHHHHHHHHH
Q psy3377 197 LTHAIAKSPLGGDYLTMQCKQFLQ 220 (336)
Q Consensus 197 ~~~~~~~~~iGG~~lt~~l~~lL~ 220 (336)
+.....-.++||.++++.|.+.+.
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~ 246 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFA 246 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHH
Confidence 223344468999999888877764
No 56
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.10 E-value=0.012 Score=51.15 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=76.0
Q ss_pred ccccCCcccCHHHHHHHHHH---HhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHc
Q psy3377 95 SYMKEGMIEDWDLFEKVLDY---TYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN 171 (336)
Q Consensus 95 ~pi~~G~i~n~d~~e~i~~~---~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~ 171 (336)
..+++|.+.|+-..-.+.+. .+++.|++......- .-||-+... -.++.--+.|+-|.-.++.+..|.++++-.
T Consensus 61 dvVRDGiVvdf~eaveiVrrlkd~lEk~lGi~~tha~t--aiPPGt~~~-~~ri~iNViESAGlevl~vlDEPTAaa~vL 137 (277)
T COG4820 61 DVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIRFTHAAT--AIPPGTEQG-DPRISINVIESAGLEVLHVLDEPTAAADVL 137 (277)
T ss_pred hhhccceEEehhhHHHHHHHHHHHHHHhhCeEeeeccc--cCCCCccCC-CceEEEEeecccCceeeeecCCchhHHHHh
Confidence 45578888776544333332 344677765321100 011111000 111222346788999999999999999999
Q ss_pred CCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHH
Q psy3377 172 GRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQC 215 (336)
Q Consensus 172 g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l 215 (336)
+.+.|.|||+|.++|-|.-+-+|.++. +.--+-||.+++--|
T Consensus 138 ~l~dg~VVDiGGGTTGIsi~kkGkViy--~ADEpTGGtHmtLvl 179 (277)
T COG4820 138 QLDDGGVVDIGGGTTGISIVKKGKVIY--SADEPTGGTHMTLVL 179 (277)
T ss_pred ccCCCcEEEeCCCcceeEEEEcCcEEE--eccCCCCceeEEEEE
Confidence 999999999999999999999999984 444567777665433
No 57
>PRK10854 exopolyphosphatase; Provisional
Probab=94.97 E-value=0.24 Score=50.03 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=54.0
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHc-C-------CCeEEEEeeCCCcEEEEEEeCCEEeccceE
Q psy3377 131 MSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN-G-------RATGLVFDSGATHTSAIPVHDGYVLTHAIA 202 (336)
Q Consensus 131 lte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~-g-------~~tglVVDiG~~~t~v~pV~dG~~~~~~~~ 202 (336)
+.-+..-.-.+++.+++.+.+..|++ +-+++..-=|.|++ | ...++|||||.++|.++-+-+|.+. ...
T Consensus 87 vATsAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~ 163 (513)
T PRK10854 87 VGTHTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVE 163 (513)
T ss_pred EehHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--EeE
Confidence 33334445567888888888888875 66665544333321 1 1358999999999999999888765 344
Q ss_pred EecchHHHHHH
Q psy3377 203 KSPLGGDYLTM 213 (336)
Q Consensus 203 ~~~iGG~~lt~ 213 (336)
..++|.-.+++
T Consensus 164 S~~lG~vrl~e 174 (513)
T PRK10854 164 SRRMGCVSFAQ 174 (513)
T ss_pred EEecceeeHHh
Confidence 55777766665
No 58
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.80 E-value=0.27 Score=49.16 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred HHHHHHHHHH--hhcccC-CCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEeh---hHHHHHHH----cC-CC
Q psy3377 106 DLFEKVLDYT--YSKCIE-SGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVK---NAVLAAFA----NG-RA 174 (336)
Q Consensus 106 d~~e~i~~~~--~~~~L~-~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~---~~~la~~s----~g-~~ 174 (336)
+.+++.++-+ |.+.+. ..+++-.++-|. .+-.-.+++...+.+-+.+|.+ +-++. .+-++.++ .+ ..
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATs-A~R~A~N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~ 129 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATS-ALRDAPNGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKG 129 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhH-HHHcCCCHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCC
Confidence 5555555422 222232 233343333333 3333445666777777777875 55543 34444443 23 67
Q ss_pred eEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHH
Q psy3377 175 TGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQ 214 (336)
Q Consensus 175 tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~ 214 (336)
.++|+|+|.++|.++=+-+..+. ....+++|.-.+++.
T Consensus 130 ~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~ 167 (492)
T COG0248 130 DGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTER 167 (492)
T ss_pred CEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehh
Confidence 89999999999999988665555 455566665444433
No 59
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=92.58 E-value=0.21 Score=47.54 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhhcccCCCCC-----------------CCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehh--H
Q psy3377 104 DWDLFEKVLDYTYSKCIESGSE-----------------YHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKN--A 164 (336)
Q Consensus 104 n~d~~e~i~~~~~~~~L~~~~~-----------------~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~--~ 164 (336)
+.+.++..+.+-..+.+..+.+ ...|+++-. ++..-+...+ +|+..|..-..+--+ +
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~-~~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVE-LFEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHH-HHHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHH-HHHHcCCceEEEeehHHH
Confidence 5567777777766655554332 234555432 4454445443 456667654444322 3
Q ss_pred HHHHHHc---------CCCeEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHH
Q psy3377 165 VLAAFAN---------GRATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFL 219 (336)
Q Consensus 165 ~la~~s~---------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL 219 (336)
++-+|.. ...+-++||+|+..|+++-+.+|.++ -.+.+++||+.+++.+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL 223 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc
Confidence 3333332 11345899999999999999999998 77889999999999998764
No 60
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.99 E-value=1.5 Score=40.53 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=59.3
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHH-------Hc-CCCeEEEEeeCCCcEEEEEEeCCEEec
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAF-------AN-GRATGLVFDSGATHTSAIPVHDGYVLT 198 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~-------s~-g~~tglVVDiG~~~t~v~pV~dG~~~~ 198 (336)
..++-|+ .+-.-.+++.+.+.+.+..|++ +-+++..-=|.| +. ...+++|+|+|.++|.++-+-+|.+.
T Consensus 59 i~~vATs-A~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~- 135 (285)
T PF02541_consen 59 IRAVATS-ALREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV- 135 (285)
T ss_dssp EEEEEEH-HHHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE-
T ss_pred EEEEhhH-HHHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee-
Confidence 3344443 3444556778888889999885 666655422222 23 67899999999999999999999988
Q ss_pred cceEEecchHHHHHHHH
Q psy3377 199 HAIAKSPLGGDYLTMQC 215 (336)
Q Consensus 199 ~~~~~~~iGG~~lt~~l 215 (336)
....+++|.-.+++.+
T Consensus 136 -~~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 136 -FSQSLPLGAVRLTERF 151 (285)
T ss_dssp -EEEEES--HHHHHHHH
T ss_pred -EeeeeehHHHHHHHHH
Confidence 6788999998887765
No 61
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=89.06 E-value=0.65 Score=43.26 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=24.5
Q ss_pred HHHHH-HcCCCeEEEEeeCCCcEEEEEEeCCEEe
Q psy3377 165 VLAAF-ANGRATGLVFDSGATHTSAIPVHDGYVL 197 (336)
Q Consensus 165 ~la~~-s~g~~tglVVDiG~~~t~v~pV~dG~~~ 197 (336)
..+++ ..|..++|+||+|..+|.|.+|.+|.+.
T Consensus 67 ~ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 67 IGAAARLTGLENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp HHHHH--HT-SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred hhhhhhcCCCCCEEEEeCCCCEEEEEEEECCeee
Confidence 34455 5688999999999999999999999995
No 62
>KOG0103|consensus
Probab=86.53 E-value=3.6 Score=42.29 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=72.2
Q ss_pred CCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC------------CeEEEEeeCCCcEEEEEEe
Q psy3377 125 EYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR------------ATGLVFDSGATHTSAIPVH 192 (336)
Q Consensus 125 ~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~------------~tglVVDiG~~~t~v~pV~ 192 (336)
.-.+++|..|.+.+..+|..++...= .-|+.-+.+.++-.+++.++|- .+-+.||+||+.++++-.-
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA~-iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAAR-IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHHh-hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 34578899999999999998877653 5677888999998888888873 3578899999999887543
Q ss_pred C--CEEe-ccceEEecchHHHHHHHHHHHHHh
Q psy3377 193 D--GYVL-THAIAKSPLGGDYLTMQCKQFLQE 221 (336)
Q Consensus 193 d--G~~~-~~~~~~~~iGG~~lt~~l~~lL~~ 221 (336)
- |..- ..+..--.+||+++++.|.+.+.+
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 3 3221 122233479999999999999864
No 63
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=85.93 E-value=4.9 Score=37.98 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=63.1
Q ss_pred eccccCCcccCHHHHHHHHHHHhhcccCCCCCC---CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEe-----hhHH
Q psy3377 94 QSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEY---HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLV-----KNAV 165 (336)
Q Consensus 94 ~~pi~~G~i~n~d~~e~i~~~~~~~~L~~~~~~---~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~-----~~~~ 165 (336)
..|+..---.|-++++++...-|. .-++.|++ -.+++|-.....+..|..+. .|-...| -+..+ -+++
T Consensus 53 FTPv~~q~~id~~alk~~v~eeY~-~AGi~pesi~sGAvIITGEtArk~NA~~vl~-alSg~aG--DFVVAtAGPdLESi 128 (473)
T COG4819 53 FTPVDKQGGIDEAALKKLVLEEYQ-AAGIAPESIDSGAVIITGETARKRNARPVLM-ALSGSAG--DFVVATAGPDLESI 128 (473)
T ss_pred eeeecccCCccHHHHHHHHHHHHH-HcCCChhccccccEEEeccccccccchHHHH-Hhhhccc--ceEEEecCCCHHHH
Confidence 456643333466788888776663 57787764 57888876655554454432 1211111 11111 1122
Q ss_pred HHHHHcC-------CCeE-EEEeeCCCcEEEEEEeCCEEeccceEEecchHHHH
Q psy3377 166 LAAFANG-------RATG-LVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYL 211 (336)
Q Consensus 166 la~~s~g-------~~tg-lVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~l 211 (336)
.|--++| +.|+ +=+|||.++|...-.-.|.+.. ..-+++||+.+
T Consensus 129 IAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~d--TaCLdiGGRLi 180 (473)
T COG4819 129 IAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSD--TACLDIGGRLI 180 (473)
T ss_pred hccCCccccchhhhhceEEEEEeccCCccceeeeccccccc--ceeeecCcEEE
Confidence 2222222 3333 3379999999988887788873 44578888743
No 64
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=84.83 E-value=7.8 Score=36.59 Aligned_cols=28 Identities=36% Similarity=0.467 Sum_probs=25.3
Q ss_pred cCCCeEEEEeeCCCcEEEEEEeCCEEec
Q psy3377 171 NGRATGLVFDSGATHTSAIPVHDGYVLT 198 (336)
Q Consensus 171 ~g~~tglVVDiG~~~t~v~pV~dG~~~~ 198 (336)
....++|++|+|..+|.|+||.+|.+..
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeee
Confidence 4468999999999999999999999983
No 65
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=79.61 E-value=7.3 Score=31.01 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=33.2
Q ss_pred EEEeeCCCcEEEEEEeCCEEeccceEEecch--------HHHHH--HHHHHHHHh
Q psy3377 177 LVFDSGATHTSAIPVHDGYVLTHAIAKSPLG--------GDYLT--MQCKQFLQE 221 (336)
Q Consensus 177 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~iG--------G~~lt--~~l~~lL~~ 221 (336)
++||+|.+.|.++-...+... .+..+++| |..++ +.+.+-|+.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 689999999999888887777 58889999 99999 888777653
No 66
>PRK13321 pantothenate kinase; Reviewed
Probab=79.36 E-value=16 Score=33.23 Aligned_cols=18 Identities=33% Similarity=0.715 Sum_probs=15.9
Q ss_pred EEEecCCceEEEeeeCCC
Q psy3377 16 LVFDVGSQSLRVGYAQED 33 (336)
Q Consensus 16 vViD~Gs~~~kaG~age~ 33 (336)
+.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998654
No 67
>KOG0100|consensus
Probab=78.55 E-value=7.7 Score=37.65 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=63.9
Q ss_pred CceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCC------CeEEEEeeCCCcEEEE--EEeCCEE-e
Q psy3377 127 HPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR------ATGLVFDSGATHTSAI--PVHDGYV-L 197 (336)
Q Consensus 127 ~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~------~tglVVDiG~~~t~v~--pV~dG~~-~ 197 (336)
...++|.|.+....+|+..-.. =---+..-+.+++.|.+|+.++|. .+-||.|+|.++-.|. .|-+|.- +
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 3567888888888888765322 112345568899999999988874 5889999999987665 4444432 2
Q ss_pred ccceEEecchHHHHHHHHHHHHH
Q psy3377 198 THAIAKSPLGGDYLTMQCKQFLQ 220 (336)
Q Consensus 198 ~~~~~~~~iGG~~lt~~l~~lL~ 220 (336)
..+..-..+||.++++..++++-
T Consensus 252 laTnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred EecCCCcccCccchHHHHHHHHH
Confidence 22333457999999988777653
No 68
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=78.03 E-value=37 Score=30.96 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=16.1
Q ss_pred eEEEecCCceEEEeeeCCC
Q psy3377 15 ALVFDVGSQSLRVGYAQED 33 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age~ 33 (336)
-++||+|-.+++.|+..+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 3789999999999998743
No 69
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=77.57 E-value=51 Score=29.65 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=32.3
Q ss_pred eEEEEeeCCCcEEEEEEeCCEEeccc-eEEecchHHHHHHHHHHHH
Q psy3377 175 TGLVFDSGATHTSAIPVHDGYVLTHA-IAKSPLGGDYLTMQCKQFL 219 (336)
Q Consensus 175 tglVVDiG~~~t~v~pV~dG~~~~~~-~~~~~iGG~~lt~~l~~lL 219 (336)
...|||||...|.++-+-+|.+..-. ..+...|+..+.+.+.+.|
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 34699999999999999988876322 2335567776777766554
No 70
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=73.76 E-value=2.4 Score=38.63 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=21.3
Q ss_pred CCeEEEEeeCCCcEEEEEEeCCE
Q psy3377 173 RATGLVFDSGATHTSAIPVHDGY 195 (336)
Q Consensus 173 ~~tglVVDiG~~~t~v~pV~dG~ 195 (336)
..+++.||+|..+|.++||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999997
No 71
>PRK13318 pantothenate kinase; Reviewed
Probab=71.76 E-value=76 Score=28.73 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.7
Q ss_pred eEEEecCCceEEEeeeCC
Q psy3377 15 ALVFDVGSQSLRVGYAQE 32 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age 32 (336)
.+.||+|...+|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 378999999999999864
No 72
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=67.64 E-value=23 Score=32.90 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCCC-----eEEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHH
Q psy3377 137 NIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRA-----TGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYL 211 (336)
Q Consensus 137 ~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~~-----tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~l 211 (336)
+.+..-+++++.+=+.++++.-.-...+-||..++=.| --.|+|+|.++|...-|-..--+ ...++-=+|+-+
T Consensus 92 t~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mV 169 (332)
T PF08841_consen 92 TDKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMV 169 (332)
T ss_dssp -SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHH
T ss_pred cccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhh
Confidence 34556688999999999999999999999999886433 23577999999998777554433 244456677888
Q ss_pred HHHHHHHH
Q psy3377 212 TMQCKQFL 219 (336)
Q Consensus 212 t~~l~~lL 219 (336)
|..+...|
T Consensus 170 TmlI~sEL 177 (332)
T PF08841_consen 170 TMLINSEL 177 (332)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 77665543
No 73
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=66.63 E-value=14 Score=33.15 Aligned_cols=44 Identities=7% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...++.+++++++++|-|.||-
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAFV------TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 455666666664 47899999999999999999999999999985
No 74
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=65.93 E-value=82 Score=28.77 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCCeEEEehhHHHHHHHc-------CCCeEEEEeeCCCcEEEEEEeCCEEeccceEEe---cchHHHH
Q psy3377 142 REKLLELMFEKYNVPAFFLVKNAVLAAFAN-------GRATGLVFDSGATHTSAIPVHDGYVLTHAIAKS---PLGGDYL 211 (336)
Q Consensus 142 r~~l~e~lFE~~~vp~v~~~~~~~la~~s~-------g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~---~iGG~~l 211 (336)
|-+.++--....+... .+.+...+|.+++ .....+|||+|.+.|-..-|.+|.+. .+... .+-...|
T Consensus 129 Rm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~--GvfEHHT~~l~~~kL 205 (254)
T PF08735_consen 129 RMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY--GVFEHHTGMLTPEKL 205 (254)
T ss_pred HHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE--EEEecccCCCCHHHH
Confidence 4333333344444444 6667776666653 46789999999999999999999987 44433 3445666
Q ss_pred HHHHHHHH
Q psy3377 212 TMQCKQFL 219 (336)
Q Consensus 212 t~~l~~lL 219 (336)
..+|.++-
T Consensus 206 ~~~l~~l~ 213 (254)
T PF08735_consen 206 EEYLERLR 213 (254)
T ss_pred HHHHHHHH
Confidence 66666653
No 75
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=65.27 E-value=14 Score=33.66 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+++++++++|-|.||-
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 556677777774 37899999999999999999999999999875
No 76
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=65.26 E-value=14 Score=33.68 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+.+++++++|-|.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 456666667774 47899999999999999999999999999985
No 77
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=65.09 E-value=14 Score=33.59 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...++.+++++++++|-|.||-
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 455666667774 47899999999999999999999999999874
No 78
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=65.00 E-value=15 Score=33.43 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 dv~~aI~~~AF~------~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAFV------KNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 455666667764 57899999999999999999999999999884
No 79
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=64.25 E-value=15 Score=33.55 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 ~v~~~I~~~AF~------~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAFK------ASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 455666667774 47899999999999999999999999999875
No 80
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=63.83 E-value=16 Score=33.46 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAFE------KSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 456666667764 57899999999999999999999999999875
No 81
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=63.11 E-value=17 Score=32.55 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 455666667774 47899999999999999999999999999874
No 82
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=63.03 E-value=16 Score=33.38 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 ~v~~~Ik~~AF~------~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAFQ------VSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 455666666664 47899999999999999999999999998874
No 83
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=62.96 E-value=16 Score=33.39 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+.++++++++-|.||-
T Consensus 74 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAFK------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 556666667774 47899999999999999999999999999875
No 84
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=62.39 E-value=18 Score=33.02 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAFI------KNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 456666667774 47899999999999999999999999999884
No 85
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=61.98 E-value=18 Score=33.10 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+.+++++++|-|.||-
T Consensus 76 ~v~~aIk~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 76 DVIEAIAETAFK------TSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 455666666664 57899999999999999999999999999874
No 86
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=60.01 E-value=21 Score=32.11 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 dv~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAFV------TSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 455666667764 47899999999999999999999999999875
No 87
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=58.55 E-value=22 Score=31.96 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+.+++++++|-|.||-
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAFV------TSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 455666666664 47899999999999999999999999999875
No 88
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=57.02 E-value=23 Score=32.39 Aligned_cols=44 Identities=9% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+.+++++++|-|.||-
T Consensus 74 dv~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAFV------ASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 455666667764 47899999999999999999999999998875
No 89
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=55.58 E-value=27 Score=31.27 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+.+++++++|-+.||-
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 456666677775 37999999999999999999999999999875
No 90
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=54.69 E-value=27 Score=31.90 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCC-CHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWN-IRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~-~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...+ +.+++++++++|-|.||-
T Consensus 76 dv~~~I~~~AF~------~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 76 EVIEAIAECAFK------TSPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 455666667774 57899999999888 589999999999999985
No 91
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=54.32 E-value=27 Score=31.98 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCC-CHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWN-IRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~-~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...+ +.+++++++++|-|.||-
T Consensus 76 dv~~~I~~~AF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAFK------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 455666677774 37999999998888 689999999999999985
No 92
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=53.82 E-value=30 Score=31.60 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+++|. .++.||||+-...++.+..++++++|-|.||-
T Consensus 74 dv~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAFV------TSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 455666667764 47899999999999999999999999998875
No 93
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=52.31 E-value=1.3e+02 Score=29.58 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCc-eEEEeCCCCCHHHHHHHHHHHHhhcCCCeE-EEehh-HHHHHHHcC--CCeEEEEe
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHP-VLMSEAPWNIRSKREKLLELMFEKYNVPAF-FLVKN-AVLAAFANG--RATGLVFD 180 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~p-vllte~~~~~~~~r~~l~e~lFE~~~vp~v-~~~~~-~~la~~s~g--~~tglVVD 180 (336)
+..+.+++.++. ..++..++.. +.+|-. -|..+ ..+ |+.+.+ .=+.. +.-+.|-.. .....|+|
T Consensus 179 ~~a~~~l~~~l~-~~Gl~~~di~~i~~TGy------GR~~i-~~~---~~ad~iv~EItaha~GA~~L~p~~~~v~TIID 247 (404)
T TIGR03286 179 ESAEEAVERALE-EAGVSLEDVEAIGTTGY------GRFTI-GEH---FGADLIQEELTVNSKGAVYLADKQEGPATVID 247 (404)
T ss_pred HHHHHHHHHHHH-HcCCCccceeEEEeeee------cHHHH-hhh---cCCCceEEEEhhHHHHHHHhcccCCCCcEEEE
Confidence 345677777774 5666554433 334332 23333 222 333322 11122 222233322 24789999
Q ss_pred eCCCcEEEEEEeCCEEeccceEEecc--hHHHHHHHHHHH
Q psy3377 181 SGATHTSAIPVHDGYVLTHAIAKSPL--GGDYLTMQCKQF 218 (336)
Q Consensus 181 iG~~~t~v~pV~dG~~~~~~~~~~~i--GG~~lt~~l~~l 218 (336)
||..-+.++-+-+|.+..-..--.-- +|++|...-..|
T Consensus 248 IGGQDsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~L 287 (404)
T TIGR03286 248 IGGMDNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRL 287 (404)
T ss_pred eCCCceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHh
Confidence 99999999888788765221111222 467777666544
No 94
>PRK13324 pantothenate kinase; Reviewed
Probab=49.05 E-value=2.1e+02 Score=26.10 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=15.4
Q ss_pred eEEEecCCceEEEeeeCC
Q psy3377 15 ALVFDVGSQSLRVGYAQE 32 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age 32 (336)
-++||+|-.++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 378999999999998754
No 95
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=48.48 E-value=35 Score=31.24 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCC-CHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWN-IRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~-~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...+ +.+++++++++|-|.||-
T Consensus 76 dv~~~I~~~aF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAFK------TSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 455666667774 46899999999888 689999999999998875
No 96
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=47.06 E-value=27 Score=26.43 Aligned_cols=50 Identities=14% Similarity=0.328 Sum_probs=35.0
Q ss_pred cCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcC
Q psy3377 98 KEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYN 154 (336)
Q Consensus 98 ~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~ 154 (336)
+.|++.|+..++.+++.+.. .| +|..|.-.+++. ...-|.+|+.+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~-~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVD-RL-----DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHH-hC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 47999999999999988663 33 444544444442 2356889999998764
No 97
>PLN02230 phosphoinositide phospholipase C 4
Probab=42.15 E-value=47 Score=34.21 Aligned_cols=44 Identities=7% Similarity=0.162 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...++....+++|+++-|.||-
T Consensus 187 ~v~~~I~~~aF~------~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAFA------ISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhccC------CCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 455666666664 47899999999999999999999999999885
No 98
>KOG0102|consensus
Probab=41.90 E-value=72 Score=32.39 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=66.4
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEEehhHHHHHHHcCCC-----eEEEEeeCCCcEEEE--EEeCCEEe-cc
Q psy3377 128 PVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRA-----TGLVFDSGATHTSAI--PVHDGYVL-TH 199 (336)
Q Consensus 128 pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~s~g~~-----tglVVDiG~~~t~v~--pV~dG~~~-~~ 199 (336)
..+++.|.+....+|+..-. +-.-.+-.-+-.++.|.+++.++|.. +-.|-|+|.++..|. =|.+|.-. ..
T Consensus 162 ~avvtvpAyfndsqRqaTkd-ag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevks 240 (640)
T KOG0102|consen 162 NAVITVPAYFNDSQRQATKD-AGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKS 240 (640)
T ss_pred heeeccHHHHhHHHHHHhHh-hhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEe
Confidence 56789999988888876543 33345666677889999999988854 556889999876543 34555543 23
Q ss_pred ceEEecchHHHHHHHHHHHHH
Q psy3377 200 AIAKSPLGGDYLTMQCKQFLQ 220 (336)
Q Consensus 200 ~~~~~~iGG~~lt~~l~~lL~ 220 (336)
+-...-.||.+++.++.+++-
T Consensus 241 Tngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 241 TNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred ccCccccChhHHHHHHHHHHH
Confidence 344567999999999998874
No 99
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=41.89 E-value=63 Score=28.99 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEE
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFL 160 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~ 160 (336)
|.++.|=+++|. .++.||||+-....+.+..++++++|-+.||- .++.
T Consensus 74 dvl~~I~~~aF~------~s~yPvILslE~hcs~~qQ~~~a~~l~~~lGd-~L~~ 121 (228)
T cd08599 74 DCIKAIKENAFT------ASEYPVIITLENHLSPELQAKAAQILRETLGD-KLFY 121 (228)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHhh-hhcc
Confidence 344555556553 47899999999999999999999999999983 4443
No 100
>PLN02952 phosphoinositide phospholipase C
Probab=41.47 E-value=51 Score=33.97 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...++..+++++|++|-|.||-
T Consensus 196 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAFS------SSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 455666666664 47899999999999999999999999998875
No 101
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.10 E-value=32 Score=36.02 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=30.7
Q ss_pred CCCeEEEehhHHH----HHHHcCCCe--EEEEeeCCCcEEEEEEeCCEEe
Q psy3377 154 NVPAFFLVKNAVL----AAFANGRAT--GLVFDSGATHTSAIPVHDGYVL 197 (336)
Q Consensus 154 ~vp~v~~~~~~~l----a~~s~g~~t--glVVDiG~~~t~v~pV~dG~~~ 197 (336)
+.|.-.+.+-|.. |+|=+|+.+ ++++|+|..+|.+.-|.+|.+.
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 3455344444433 334447777 9999999999999999988765
No 102
>PLN02222 phosphoinositide phospholipase C 2
Probab=40.75 E-value=49 Score=33.99 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...++..+++++|++|-|.||-
T Consensus 176 ~v~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAFD------VSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhccc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 345555555653 57899999999999999999999999998875
No 103
>PLN02228 Phosphoinositide phospholipase C
Probab=40.13 E-value=55 Score=33.55 Aligned_cols=44 Identities=7% Similarity=0.171 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|. .++.||||+-...++..+++++|++|-|.||-
T Consensus 179 ~v~~~I~~~AF~------~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 179 KCLNAIKDNAFQ------VSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 455666666764 47899999999999999999999999998875
No 104
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=39.54 E-value=2.9e+02 Score=24.89 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.5
Q ss_pred EEEecCCceEEEeeeCCC
Q psy3377 16 LVFDVGSQSLRVGYAQED 33 (336)
Q Consensus 16 vViD~Gs~~~kaG~age~ 33 (336)
++||+|-.++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987554
No 105
>PRK13326 pantothenate kinase; Reviewed
Probab=38.95 E-value=3.1e+02 Score=25.09 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=16.8
Q ss_pred eEEEecCCceEEEeeeCCC
Q psy3377 15 ALVFDVGSQSLRVGYAQED 33 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age~ 33 (336)
-++||+|-.++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 4899999999999998765
No 106
>PLN02223 phosphoinositide phospholipase C
Probab=38.25 E-value=62 Score=32.83 Aligned_cols=45 Identities=7% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNV 155 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~v 155 (336)
|.++.|=+|+|.. .++.||||+-...++...++++|+++-|.||=
T Consensus 179 ~vl~aI~~~AF~~-----s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFTK-----CRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhhc-----CCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 4566666677742 24899999999999999999999999998874
No 107
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=38.02 E-value=1.2e+02 Score=27.97 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCCeEEEehhHHHHHHH-------cCCCeEEEEeeCCCcEEEEEEeCCEEec
Q psy3377 144 KLLELMFEKYNVPAFFLVKNAVLAAFA-------NGRATGLVFDSGATHTSAIPVHDGYVLT 198 (336)
Q Consensus 144 ~l~e~lFE~~~vp~v~~~~~~~la~~s-------~g~~tglVVDiG~~~t~v~pV~dG~~~~ 198 (336)
.+.+.+=|.|++| +++.+++-+++++ .+..+.++|.+|.+. -..-|.+|.++.
T Consensus 88 ~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 88 PLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred CHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 3566666788998 8899999988874 245789999999976 677888999876
No 108
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=35.03 E-value=46 Score=26.63 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=34.2
Q ss_pred cCCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcC
Q psy3377 98 KEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYN 154 (336)
Q Consensus 98 ~~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~ 154 (336)
+.|++.|+..++.+++.+..+.| +|..|.-..+......-|.++..+|+.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999988774323 44444433321112245788888888664
No 109
>KOG1794|consensus
Probab=34.08 E-value=4e+02 Score=25.06 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhcccCCCCCC--CceEEEeCCCCCHHHHHHHHHHHHhhcC--CCeEEEehhHHHHHHHc--CCCeEEEE
Q psy3377 106 DLFEKVLDYTYSKCIESGSEY--HPVLMSEAPWNIRSKREKLLELMFEKYN--VPAFFLVKNAVLAAFAN--GRATGLVF 179 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~--~pvllte~~~~~~~~r~~l~e~lFE~~~--vp~v~~~~~~~la~~s~--g~~tglVV 179 (336)
+.++..++.++. +-+++.+. +.|.+.-+-...+...+++.+.+=.+|. +..+++.+++..++++. |...|+|+
T Consensus 47 ~rie~~i~~A~~-k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAKE-KAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHHh-hcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 456677777874 56666654 6777877777777777778777766652 23488999999998875 66899999
Q ss_pred eeCCCcEEEEEEeCCEE
Q psy3377 180 DSGATHTSAIPVHDGYV 196 (336)
Q Consensus 180 DiG~~~t~v~pV~dG~~ 196 (336)
=.|-++..-.-.-||..
T Consensus 126 iaGTgs~crl~~~DGs~ 142 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSE 142 (336)
T ss_pred EecCCceeEEECCCCCc
Confidence 99999876666666543
No 110
>KOG0169|consensus
Probab=33.28 E-value=78 Score=33.24 Aligned_cols=47 Identities=11% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEE
Q psy3377 107 LFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFL 160 (336)
Q Consensus 107 ~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~ 160 (336)
.++.|=+|+|. .+++||||+-....++...+++|+++=+.||= .+|+
T Consensus 362 vl~aIk~~AF~------~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifGd-~Ly~ 408 (746)
T KOG0169|consen 362 VLRAIKKYAFV------TSPYPVILTLENHCSPDQQAKMAQMLKEIFGD-MLYT 408 (746)
T ss_pred HHHHHHHhccc------CCCCCEEEEecccCCHHHHHHHHHHHHHHhhh-heec
Confidence 45555566664 57999999999999999999999999999874 3444
No 111
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=31.01 E-value=23 Score=30.46 Aligned_cols=31 Identities=39% Similarity=0.635 Sum_probs=23.5
Q ss_pred CCCceEEEecCCceEEEeeeCCCCCeEEccCCceee
Q psy3377 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVV 46 (336)
Q Consensus 11 ~~~~~vViD~Gs~~~kaG~age~~P~~~~ps~v~~~ 46 (336)
+|+-.+|||+|. +.|+|. +|+.-+||+--.+
T Consensus 61 eEi~~vVIDCGG-TlRCGi----YPkK~IpTINi~p 91 (183)
T PF03612_consen 61 EEIACVVIDCGG-TLRCGI----YPKKRIPTINIHP 91 (183)
T ss_pred HHeEEEEEecCC-ceeecc----ccccCCceeeeee
Confidence 456789999994 789987 5888888864433
No 112
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=30.27 E-value=99 Score=29.54 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=35.5
Q ss_pred cCCCeEEEEeeCCCcEEEEEEeCCEEeccceEEe-c---chHHHHHHHHHHHHH
Q psy3377 171 NGRATGLVFDSGATHTSAIPVHDGYVLTHAIAKS-P---LGGDYLTMQCKQFLQ 220 (336)
Q Consensus 171 ~g~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~-~---iGG~~lt~~l~~lL~ 220 (336)
+...+=++||+|++.|.++.|.+|.++..---.+ . ++.-.++-.+..++.
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGiggt~g~pG~~~~G~lD~Evay~i~ 204 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIGGTIGFPGYLSHGALDGEVAYLIG 204 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEccccccccCCccccCCcccHHHHHHhc
Confidence 4456899999999999999999999997432222 1 233356666666665
No 113
>PF13941 MutL: MutL protein
Probab=29.80 E-value=1.3e+02 Score=29.91 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=50.3
Q ss_pred CCceEEEeCCC------CCHHHHHHHHHHHHhhc-CCCe-----------EEEehhHHHH---HHHc-CCCeEEEEeeCC
Q psy3377 126 YHPVLMSEAPW------NIRSKREKLLELMFEKY-NVPA-----------FFLVKNAVLA---AFAN-GRATGLVFDSGA 183 (336)
Q Consensus 126 ~~pvllte~~~------~~~~~r~~l~e~lFE~~-~vp~-----------v~~~~~~~la---~~s~-g~~tglVVDiG~ 183 (336)
..++.++++.+ +....|+.+.+++.+.. +.|. +.-.+.+++. +++- +...-+|||+|.
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 56788888653 45677888888877642 2222 2223334433 2355 678899999999
Q ss_pred CcEEEEEEeCCEEeccc
Q psy3377 184 THTSAIPVHDGYVLTHA 200 (336)
Q Consensus 184 ~~t~v~pV~dG~~~~~~ 200 (336)
.+|.|-.|.+|.+-...
T Consensus 258 ATTDVhSv~~~~~~~~~ 274 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIPG 274 (457)
T ss_pred cccchhhhccCCccccc
Confidence 99999999977665443
No 114
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=29.26 E-value=1.6e+02 Score=25.02 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=19.5
Q ss_pred ccccCCcccCHHHHHHHHHHHhh
Q psy3377 95 SYMKEGMIEDWDLFEKVLDYTYS 117 (336)
Q Consensus 95 ~pi~~G~i~n~d~~e~i~~~~~~ 117 (336)
.-+++|.|.|.+.+...++.++.
T Consensus 35 ~gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 35 RGIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CCccCcEEECHHHHHHHHHHHHH
Confidence 34789999999999988888885
No 115
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.31 E-value=4.2e+02 Score=24.59 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=30.9
Q ss_pred CeEEEEeeCCCcEEEEEEeCCEEe---ccceEEecchHHHHHHHHHHHHH
Q psy3377 174 ATGLVFDSGATHTSAIPVHDGYVL---THAIAKSPLGGDYLTMQCKQFLQ 220 (336)
Q Consensus 174 ~tglVVDiG~~~t~v~pV~dG~~~---~~~~~~~~iGG~~lt~~l~~lL~ 220 (336)
.-+||||+|.+.|...-|-++++. .|...++. -..|..++.++..
T Consensus 227 ~palvVd~GngHttaalvdedRI~gv~EHHT~~Ls--pekled~I~rf~~ 274 (342)
T COG4012 227 DPALVVDYGNGHTTAALVDEDRIVGVYEHHTIRLS--PEKLEDQIIRFVE 274 (342)
T ss_pred CceEEEEccCCceEEEEecCCeEEEEeecccccCC--HHHHHHHHHHHHh
Confidence 478999999999999988888764 23333332 2666666666543
No 116
>PRK00568 carbon storage regulator; Provisional
Probab=28.09 E-value=60 Score=23.82 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=25.5
Q ss_pred CCCcccCCCCceEEEecCCceEEEeeeCCCCCe
Q psy3377 4 GGILYGGDEIGALVFDVGSQSLRVGYAQEDSPK 36 (336)
Q Consensus 4 ~~~~~~~~~~~~vViD~Gs~~~kaG~age~~P~ 36 (336)
+-++.-||+....|++++.+.+|.|+. .|+
T Consensus 9 gEsI~Igd~I~I~Vl~i~g~~VrlGI~---AP~ 38 (76)
T PRK00568 9 NEGIVIDDNIHIKVISIDRGSVRLGFE---APE 38 (76)
T ss_pred CCeEEeCCCeEEEEEEEcCCEEEEEEE---CCC
Confidence 345777999999999999999999997 565
No 117
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=25.35 E-value=82 Score=23.38 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.5
Q ss_pred eEEEecCCceEEEeeeCC
Q psy3377 15 ALVFDVGSQSLRVGYAQE 32 (336)
Q Consensus 15 ~vViD~Gs~~~kaG~age 32 (336)
.+.||+|+..+|+|+..+
T Consensus 3 ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred EEEEccCCCeEEEEEECC
Confidence 689999999999998753
No 118
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=24.34 E-value=3.1e+02 Score=20.54 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=32.7
Q ss_pred EeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHH---HHHHHhCCcccC
Q psy3377 179 FDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQC---KQFLQENNIDII 227 (336)
Q Consensus 179 VDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l---~~lL~~~~~~~~ 227 (336)
..++....+|..++++.+. .+..+==|+..+-+.+ ...|.+||.++.
T Consensus 7 F~i~~rei~I~vi~e~kIq--GItfslDg~efl~eri~~L~~~L~kRgv~v~ 56 (86)
T PF09153_consen 7 FQIGGREIWIAVIFEEKIQ--GITFSLDGEEFLRERISRLIEFLKKRGVSVS 56 (86)
T ss_dssp EEETTEEEEEEEEESSSEE--EEEEESSHHHHHH-HHHHHHHHHHHTT----
T ss_pred eeeCCeEEEEEEEEcCcee--eEEEEeccHHHHHHHHHHHHHHHHhcCceeE
Confidence 4678888999999999976 6777777788887555 445778887654
No 119
>KOG1265|consensus
Probab=24.16 E-value=1.3e+02 Score=32.39 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcC
Q psy3377 106 DLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYN 154 (336)
Q Consensus 106 d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~ 154 (336)
|.+|.|-+.+|. .+.+|||++-....++++..||++++-+-||
T Consensus 388 dVleAIaEtAFk------TSpyPVILSfENH~s~kQQaKMa~ycr~IFG 430 (1189)
T KOG1265|consen 388 DVLEAIAETAFK------TSPYPVILSFENHCSPKQQAKMAEYCRDIFG 430 (1189)
T ss_pred HHHHHHHHhhcc------CCCCceEEeecccCCHHHHHHHHHHHHHHHH
Confidence 345555555553 5789999999888899999999999876664
No 120
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=22.95 E-value=4.1e+02 Score=21.92 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCCeEEEehhHHHHHHHc-------CCCeEEEEeeCCCcEEEEEEeCCEEecc
Q psy3377 143 EKLLELMFEKYNVPAFFLVKNAVLAAFAN-------GRATGLVFDSGATHTSAIPVHDGYVLTH 199 (336)
Q Consensus 143 ~~l~e~lFE~~~vp~v~~~~~~~la~~s~-------g~~tglVVDiG~~~t~v~pV~dG~~~~~ 199 (336)
-.+.+.|=+.|++| +++.+++-+++++. +..+.+.|.+|.+ .-..-|++|.++..
T Consensus 81 ~~l~~~l~~~~~~p-v~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii~~g~i~~G 142 (179)
T PF00480_consen 81 IPLKEELEERFGVP-VIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGIIINGKIYRG 142 (179)
T ss_dssp CEHHHHHHHHHTSE-EEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEEETTEEETT
T ss_pred CCHHHHhhcccceE-EEEecCCCcceeehhhcCccCCcceEEEEEeecC-CCcceecccccccC
Confidence 45666676778885 88888888887652 3468999999986 56777889999864
No 121
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=22.15 E-value=2.4e+02 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=29.9
Q ss_pred EEEEeeCCCcEEEEEE-eCCEEeccceEEecchHHHHHHHHHHHHHhC
Q psy3377 176 GLVFDSGATHTSAIPV-HDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222 (336)
Q Consensus 176 glVVDiG~~~t~v~pV-~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~ 222 (336)
-|.||+|...+.+.-+ -+|..+........-+...+-+.|.+++.+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 50 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKKY 50 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHHh
Confidence 4789999887777666 3566664322222224566777888877653
No 122
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=22.03 E-value=95 Score=25.30 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCcccCHHHHHHHHHHHhhcccCCCCCCCceEEEeCCC--CCHHHHHHHHHHHHhhcC
Q psy3377 99 EGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPW--NIRSKREKLLELMFEKYN 154 (336)
Q Consensus 99 ~G~i~n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~--~~~~~r~~l~e~lFE~~~ 154 (336)
.|++.|+..++.+++..+.+.| +|..|....+. .....-|.+|..+|+.+.
T Consensus 57 ~GmviDF~~lk~~l~~~i~~~l-----DH~~Ln~~~~~~~~~~PTaEniA~~i~~~l~ 109 (135)
T cd00470 57 TGMVMNLTDLKKAIEEAIMKPL-----DHKNLDDDVPYFADVVSTTENLAVYIWDNLQ 109 (135)
T ss_pred CCEEEEHHHHHHHHHHHHHhhc-----CCceeccccccccCCCCCHHHHHHHHHHHHH
Confidence 6999999999988865332333 22222221111 011245888999998774
No 123
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=21.03 E-value=4.3e+02 Score=22.03 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCceEEEeCCCCCHHHHHHHHHHHHhhcCCCeEEE
Q psy3377 104 DWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFL 160 (336)
Q Consensus 104 n~d~~e~i~~~~~~~~L~~~~~~~pvllte~~~~~~~~r~~l~e~lFE~~~vp~v~~ 160 (336)
.+++++..+...+.+. .......+.+ -=-.++...-+++++.+||.|.+|-+-+
T Consensus 65 ~~~~l~~~l~~~l~~~--~~~~~~~l~i-yFG~~~~~~~~~lAr~lFe~F~~PlL~v 118 (153)
T PF14401_consen 65 ALEELDPLLQKALAKL--IKSERFELSI-YFGQTPDPRLERLARQLFERFPCPLLEV 118 (153)
T ss_pred cHHHHhHHHHHHHhcc--cCCceEEEEE-EECCCCCHHHHHHHHHHHHhCCCceEEE
Confidence 3456667777666432 2222222222 2234577889999999999999997766
No 124
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=20.75 E-value=2.1e+02 Score=28.00 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=35.0
Q ss_pred EEEEeeCCCcEEEEEEeCCEEeccceEEecchHHHHHHHHHHHHHhCCc
Q psy3377 176 GLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNI 224 (336)
Q Consensus 176 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG~~lt~~l~~lL~~~~~ 224 (336)
-+=||+|..+|-++-+-++.++...+.+...--..+.+.|.++|.+.+.
T Consensus 146 ~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 146 TLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 4557999999999998888777655555433346667777777776654
No 125
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.64 E-value=2.1e+02 Score=26.78 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=32.7
Q ss_pred EEEeeCCCcEEEEEEeCCEEeccceEEecchH---HHHHHHHHHHHHhCCc
Q psy3377 177 LVFDSGATHTSAIPVHDGYVLTHAIAKSPLGG---DYLTMQCKQFLQENNI 224 (336)
Q Consensus 177 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~iGG---~~lt~~l~~lL~~~~~ 224 (336)
+=||+|..+|-++-+-++.++. ....+-|+ ....+.|.+++.+.+.
T Consensus 35 ~GIDiGStt~K~Vlld~~~i~~--~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 35 CGIDVGSVSSQAVLVCDGELYG--YNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEeCchhEEEEEEeCCEEEE--EEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 5589999999999998776553 33345554 3667777777776654
No 126
>PRK00976 hypothetical protein; Provisional
Probab=20.13 E-value=1.9e+02 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHHHHcCCCeEEEEeeCCCcEEEEEEeCCEEec
Q psy3377 165 VLAAFANGRATGLVFDSGATHTSAIPVHDGYVLT 198 (336)
Q Consensus 165 ~la~~s~g~~tglVVDiG~~~t~v~pV~dG~~~~ 198 (336)
.++.+-.+..+-+|+|+|+ .|-...|-+|+++.
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvg 172 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIVG 172 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEEc
Confidence 3444457889999999999 88999999999985
Done!