RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3377
(336 letters)
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 287 bits (737), Expect = 1e-95
Identities = 104/298 (34%), Positives = 157/298 (52%), Gaps = 57/298 (19%)
Query: 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNV 70
DE+ ALV D GS + + G+A ED+P+A IP+VVG G
Sbjct: 1 DEVSALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRG-------------------- 40
Query: 71 TASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVL 130
KY++ AL R G+E++ +++G++E+WD EK+ ++T+ + + E HP+L
Sbjct: 41 --VMVKYYVGDEAL-SKRPGLEVRYPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLL 97
Query: 131 MSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIP 190
++E P N + REK E+MFE + VPA +L K AVL+A+A+GR TGLV DSGA TS +P
Sbjct: 98 LTEPPLNPPANREKATEIMFETFGVPALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVP 157
Query: 191 VHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKK 250
V++GYVL AI +S L GD LT ++ L
Sbjct: 158 VYEGYVLQKAIRRSDLAGDDLTDYLRKLLS------------------------------ 187
Query: 251 NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPF-DEKSILNLPPSHYEFPNGYHQDFG 307
T S++ Y+ ++VV+D ++S+ VS+ PF D + + P YE P+GY G
Sbjct: 188 ---SRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYELPDGYVIILG 242
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 206 bits (526), Expect = 7e-64
Identities = 91/295 (30%), Positives = 136/295 (46%), Gaps = 48/295 (16%)
Query: 15 ALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASG 74
A+V D GS +++ G+A ED P+ P++VG +DG
Sbjct: 3 AIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVGDA------------------ 44
Query: 75 NKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEA 134
F+ A R G+E++ ++ G++E+WD EK+ DYT+ + E HPVL++E
Sbjct: 45 KDIFVGDEAQ-EKRGGLELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEP 103
Query: 135 PWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDG 194
P N +S REK+LE+MFE +N PA ++ AVL+ +A+GR TGLV DSG T +PV DG
Sbjct: 104 PMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDG 163
Query: 195 YVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKD-KEPPKWTRKKNLP 253
YVL HAI + + G +T K+ L E E +++ KE L
Sbjct: 164 YVLPHAIKRIDIAGRDITDYLKELLSE---RGYQFNSSAEFEIVREIKE--------KLC 212
Query: 254 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFGC 308
V + + K + + S L YE P+G G
Sbjct: 213 YVAEDFEKEM-KLARESSESSKL----------------EKTYELPDGNTIKVGN 250
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 159 bits (404), Expect = 3e-45
Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 42/318 (13%)
Query: 8 YGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDT 67
GD + +V D GS + + G+A D+P P++VG D D +
Sbjct: 1 MTGDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVG------------RRRDED----S 44
Query: 68 NNVTASGNKYFIDTNALYVA-RKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGS-- 124
++ A +E++ ++ G+I +WD E++ DYT+ +
Sbjct: 45 VMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSP 104
Query: 125 EYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRA--TGLVFDSG 182
E HP+L++E P N S REK+ EL+FE NVPA +L AVL+ +A+G + TGLV DSG
Sbjct: 105 EEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSG 164
Query: 183 ATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKE 242
+ T IPV DG VL A+ + +GG +T K+ L+E +K +
Sbjct: 165 DSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSR-------GYNLKSEL 217
Query: 243 PPKWTR-----KKNLPEV--TQSWHNYSVKKVVQDFQQSVLQVS-ETPFDEKSILNLPPS 294
+ K+ + E ++ + ++ ++ ++ + S E+ F ++
Sbjct: 218 VEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKE 277
Query: 295 HYEFP------NGYHQDF 306
E P G + F
Sbjct: 278 SKELPDGEEIEFGNEERF 295
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 126 bits (317), Expect = 3e-33
Identities = 68/212 (32%), Positives = 114/212 (53%), Gaps = 20/212 (9%)
Query: 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNV 70
+++ ALV D GS + G+A +D+P+A P++VG G +
Sbjct: 4 EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGM--------------- 48
Query: 71 TASGNKYFIDTNALYVARKGMEIQSY-MKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPV 129
+ Y D +++G+ Y ++ G++ +WD EK+ +T+ + E HPV
Sbjct: 49 -GQKDSYVGDEAQ---SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 104
Query: 130 LMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAI 189
L++EAP N ++ REK+ ++MFE +N PA ++ AVL+ +A+GR TG+V DSG + +
Sbjct: 105 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTV 164
Query: 190 PVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQE 221
P+++GY L HAI + L G LT + L E
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYMMKILTE 196
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 124 bits (314), Expect = 9e-33
Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 34/218 (15%)
Query: 12 EIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVT 71
E A V D GS ++ G+A +D+P+ P++VG +P +
Sbjct: 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVG-------------------RPKNPGIM 45
Query: 72 ASGNKYFIDTNALYVARKG------MEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSE 125
+ YV + + ++ ++ G++ +WD EK+ +T+ + E
Sbjct: 46 VGM-----EEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
Query: 126 YHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSG--A 183
HPVL++EAP N ++ REK+ ++MFE +NVPA ++ AVL+ +A+GR TG+V DSG
Sbjct: 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160
Query: 184 THTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQE 221
+HT +P+++GY L HAI + + G LT + L E
Sbjct: 161 SHT--VPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHE 196
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 116 bits (291), Expect = 1e-29
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 31/213 (14%)
Query: 16 LVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASGN 75
++ D G+ ++ G+A ED P P+ VG +P V A
Sbjct: 15 IIIDNGTGYIKAGFAGEDVPNLVFPSYVG-------------------RPKYKRVMAGA- 54
Query: 76 KYFIDTNALYVARKGMEIQSYMK------EGMIEDWDLFEKVLDYTYSKCIESGSEYHPV 129
++ N ++V K E + +K G+IE+W+ E + + Y+ ++ SE HPV
Sbjct: 55 ---VEGN-IFVGNKAEEYRGLLKVTYPINHGIIENWNDMENIWIHVYNS-MKINSEEHPV 109
Query: 130 LMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAI 189
L++EAP N + +EK+ E+ FE +NVPA F+ A+L+ ++ G+ G V D G +
Sbjct: 110 LLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169
Query: 190 PVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQEN 222
+++GY +T+ I ++ + G +T L++N
Sbjct: 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKN 202
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 110 bits (277), Expect = 3e-27
Identities = 74/262 (28%), Positives = 107/262 (40%), Gaps = 42/262 (16%)
Query: 15 ALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASG 74
+V D G+ ++GYA P IP ++ + S D+D
Sbjct: 6 VVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLD------------ 53
Query: 75 NKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEA 134
++I A A K + MK G++EDWDL EK + K + E H +++E
Sbjct: 54 --FYIGDEA-LAASKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEP 110
Query: 135 PWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFAN----------GRATGLVFDSGAT 184
P N RE E+MFE +NV ++ AVLA A+ G TG V DSG
Sbjct: 111 PMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDG 170
Query: 185 HTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIK----- 239
T IPV DGYV+ +I PL G +T +Q L+E I ++ + IK
Sbjct: 171 VTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCY 230
Query: 240 ------------DKEPPKWTRK 249
D +P +K
Sbjct: 231 VAPDIAKEFEKYDSDPKNHFKK 252
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 107 bits (268), Expect = 2e-26
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 20/217 (9%)
Query: 15 ALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASG 74
A+V D GS ++G A +D+P + PA+VG K + +
Sbjct: 7 AVVIDNGSGYCKIGIAGDDAPTSCFPAIVG-----------------RSKQNDGIFSTFN 49
Query: 75 NKYFIDTNALYVARKG-MEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSE 133
+Y++ A A++G + I+ ++ G+I WD E + + + + E PV M++
Sbjct: 50 KEYYVGEEAQ--AKRGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTD 107
Query: 134 APWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHD 193
AP N + RE++ ++MFE +N P ++ AVL+ + +G+ GLV DSG T +PV +
Sbjct: 108 APMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFE 167
Query: 194 GYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPY 230
G+ + AI K L G T Q LQE + P+
Sbjct: 168 GHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPH 204
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 65.3 bits (159), Expect = 1e-12
Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 15/120 (12%)
Query: 98 KEGMIEDWDLFEKVLDYTYSK-CIESGSEYHPVLMSEAPWNIRSKREKL---------LE 147
+ G + D D E+ L + + SE V ++E + RE + L
Sbjct: 33 RPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLA 92
Query: 148 LMFEKYNVPAFFLVKNAVLAAFANGR-----ATGLVFDSGATHTSAIPVHDGYVLTHAIA 202
L E +V +AV AA A G T LV D G T V DG A
Sbjct: 93 LALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAG 152
>gnl|CDD|132871 cd07044, CofD_YvcK, Family of CofD-like proteins and proteins
related to YvcK. CofD is a 2-phospho-L-lactate
transferase that catalyzes the last step in the
biosynthesis of coenzyme F(420)-0 (F(420) without
polyglutamate) by transferring the lactyl phosphate
moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to
7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol
(F0). F420 is a hydride carrier, important for energy
metabolism of methanogenic archaea, as well as for the
biosynthesis of other natural products, like
tetracycline in Streptomyces. F420 and some of its
precursors are also utilized as cofactors for enzymes,
like DNA photolyase in Mycobacterium tuberculosis. YvcK
from Bacillus subtilis is a member of a family of
mostly uncharacterized proteins and has been proposed
to play a role in carbon metabolism, since its function
is essential for growth on intermediates of the Krebs
cycle and pentose phosphate pathway. Both families
appear to have a conserved phosphate binding site, but
have different substrate binding residues conserved
within each family.
Length = 309
Score = 30.2 bits (68), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 38 EIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNV 70
EI A+V V +DGG + + D+ D NV
Sbjct: 23 EITAIVTVADDGGSSGELRNXQDIPPPGDLRNV 55
>gnl|CDD|183230 PRK11613, folP, dihydropteroate synthase; Provisional.
Length = 282
Score = 30.1 bits (68), Expect = 1.6
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 14 GALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQT----ASIDT 57
GA + DVG +S R G A E S + E+ V+ VVE Q S+DT
Sbjct: 51 GATIIDVGGESTRPG-AAEVSVEEELDRVIPVVEAIAQRFEVWISVDT 97
>gnl|CDD|233439 TIGR01496, DHPS, dihydropteroate synthase. This model represents
dihydropteroate synthase, the enzyme that catalyzes the
second to last step in folic acid biosynthesis. The
gene is usually designated folP (folic acid
biosynthsis) or sul (sulfanilamide resistance). This
model represents one branch of the family of
pterin-binding enzymes (pfam00809) and of a cluster of
dihydropteroate synthase and related enzymes (COG0294).
Other members of pfam00809 and COG0294 are represented
by model TIGR00284 [Biosynthesis of cofactors,
prosthetic groups, and carriers, Folic acid].
Length = 257
Score = 29.1 bits (66), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 12 EIGALVFDVGSQSLRVGYAQEDSPKAEI----PAVVGVVEDGGQTASIDT 57
E GA + DVG +S R G A SP+ E+ P + + + S+DT
Sbjct: 34 EEGADIIDVGGESTRPG-ADRVSPEEELNRVVPVIKALRDQPDVPISVDT 82
>gnl|CDD|150361 pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin
assembly protein. This entry represents TrbC, a protein
that is an essential component of the F-type conjugative
pilus assembly system for the transfer of plasmid DNA.
The N-terminal portion of these proteins is
heterogeneous.
Length = 113
Score = 26.8 bits (60), Expect = 8.5
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 150 FEKYN---VPAFFLVKNAVLAAFANGRATGLVFDS 181
F +YN VPAF +VK++ L + G +D
Sbjct: 64 FRRYNITSVPAFVVVKDSPLVCLSEGCCPPEDYDV 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.399
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,293,340
Number of extensions: 1653999
Number of successful extensions: 1390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1376
Number of HSP's successfully gapped: 25
Length of query: 336
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 239
Effective length of database: 6,635,264
Effective search space: 1585828096
Effective search space used: 1585828096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)