RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3377
(336 letters)
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 266 bits (682), Expect = 5e-86
Identities = 74/313 (23%), Positives = 137/313 (43%), Gaps = 38/313 (12%)
Query: 1 MSAGGI-LYGGDEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPM 59
MS + +YGGDE+ A+V D GS + +GY+ D P++ +P+V G
Sbjct: 10 MSNAALQVYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTAD---------- 59
Query: 60 DVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKC 119
GNK ++ + RK E++ ++ G++ DWD ++ +
Sbjct: 60 -------------EGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNE 106
Query: 120 IESGSEYH-PVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLV 178
+ S P L++E WN R+K LE++ E A +L + +FA GR LV
Sbjct: 107 LYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLV 166
Query: 179 FDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAI 238
D G S P+ DG L+ + ++ + G ++ K+ L+ IIP + + ++
Sbjct: 167 VDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKE--IIPLFAIKQRK-- 222
Query: 239 KDKEPPKWTRKKNLPEVTQSWHNYSVKK-VVQDFQQSVLQVSETPFDEKSILNLPPS--- 294
P++ +K EV +S ++Y+ + Q+ ++++ + T E++ L +
Sbjct: 223 -----PEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKR 277
Query: 295 HYEFPNGYHQDFG 307
E P F
Sbjct: 278 SIESPWNEEIVFD 290
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 231 bits (592), Expect = 2e-73
Identities = 71/305 (23%), Positives = 120/305 (39%), Gaps = 43/305 (14%)
Query: 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNV 70
+ A V D G+ ++GYA P+ IP+ + + E +A +
Sbjct: 3 GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE----SAKVGDQ-----AQRRVMK 53
Query: 71 TASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVL 130
+FI A+ + + ++ G++EDWDL E+ ++ K + + E H L
Sbjct: 54 GVDDLDFFIGDEAI--EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFL 111
Query: 131 MSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGR--------ATGLVFDSG 182
++E P N RE E+MFE +NVP ++ AVLA A+ TG V DSG
Sbjct: 112 LTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSG 171
Query: 183 ATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKE 242
T IPV +GYV+ I P+ G +T +Q L++ + I P + +A+K++
Sbjct: 172 DGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKER- 230
Query: 243 PPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGY 302
++Y V D + + + +
Sbjct: 231 -----------------YSY----VCPDLVKEFNKYDTDGSKWIKQYTGI--NAISKKEF 267
Query: 303 HQDFG 307
D G
Sbjct: 268 SIDVG 272
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 221 bits (565), Expect = 8e-70
Identities = 85/297 (28%), Positives = 137/297 (46%), Gaps = 48/297 (16%)
Query: 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNV 70
DE ALV D GS ++ G+A +D+P+A P++VG + V
Sbjct: 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP-----------------RHQGVMV 45
Query: 71 TASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVL 130
++ A R + ++ ++ G+I +WD EK+ +T+ + E HP L
Sbjct: 46 GMGQKDSYVGDEAQS-KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTL 104
Query: 131 MSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIP 190
++EAP N ++ REK+ ++MFE +NVPA ++ AVL+ +A+GR TG+V DSG T +P
Sbjct: 105 LTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVP 164
Query: 191 VHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKK 250
+++GY L HAI + L G LT + L E + +E ++D K+
Sbjct: 165 IYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTT---AEREIVRDI-------KE 214
Query: 251 NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFG 307
L V DF+ + + + EKS YE P+G G
Sbjct: 215 KLCYVA------------LDFENEMATAASSSSLEKS--------YELPDGQVITIG 251
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 204 bits (520), Expect = 1e-62
Identities = 74/310 (23%), Positives = 116/310 (37%), Gaps = 42/310 (13%)
Query: 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDT--PMDVDVKPDTN 68
++ D G+ ++GYA D+P P V+ G + + P + K +
Sbjct: 3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGH 62
Query: 69 NVTASGN---KYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSE 125
+ +FI +AL A G + ++ G IE+WD E+ + K + E
Sbjct: 63 LSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122
Query: 126 YHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRA--------TGL 177
H L++E P N RE E+MFE +N ++ AVLA A+ + TG
Sbjct: 123 DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGT 182
Query: 178 VFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEA 237
V DSG T IPV +GYV+ +I PL G +T + L++ N P + E
Sbjct: 183 VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRN---EPDSSLKTAER 239
Query: 238 IKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYE 297
IK++ Y V D + + P S
Sbjct: 240 IKEE------------------CCY----VCPDIVKEFSRFDREPDRYLK----YASESI 273
Query: 298 FPNGYHQDFG 307
+ D G
Sbjct: 274 TGHSTTIDVG 283
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 178 bits (453), Expect = 4e-53
Identities = 67/298 (22%), Positives = 112/298 (37%), Gaps = 47/298 (15%)
Query: 11 DEIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNV 70
+V D G+ ++ GYA + P+ PA+VG T + +
Sbjct: 4 QGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEI----------- 52
Query: 71 TASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSK-CIESGSEYHPV 129
+ A R +E+ M+ G++ +WD + + DYT+ + + +
Sbjct: 53 ----KDLMVGDEASE-LRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKI 107
Query: 130 LMSEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAI 189
L++E P N REK++E+MFE Y ++ AVL +A G TG+V DSG T
Sbjct: 108 LLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIC 167
Query: 190 PVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRK 249
PV++G+ L H + + G +T + L E ++ K
Sbjct: 168 PVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHS---ADFETVRM-------IK 217
Query: 250 KNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQDFG 307
+ L Y V + +Q ET +S Y P+G G
Sbjct: 218 EKLC--------Y----VGYNIEQEQKLALETTVLVES--------YTLPDGRIIKVG 255
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 1e-09
Identities = 60/360 (16%), Positives = 104/360 (28%), Gaps = 111/360 (30%)
Query: 19 DVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGG--------QTASIDTPMDVDVKPDTNNV 70
D S +LR+ + + + V V +T M + + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 71 TASGN----KYFID--------TNALYVARK-------GM----------------EIQS 95
+ N KY + AL R G+ ++Q
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 96 YMKEGMIEDW----------DLFEKV--LDYTYSKCIESGSEYHPVLMSEAPWNIRSKRE 143
M + W + E + L Y S S++ S I S +
Sbjct: 179 KMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIHSIQA 232
Query: 144 KLLELMFEKYNVPAFFL---VKNA-VLAAFANG-------RATGLVFDSGATHTSAIPV- 191
+L L+ K + V+NA AF R + A T+ I +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 192 HDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPY--MVGGKEAIKDKEPPKWTRK 249
H LT KS L YL + + L + P ++ E+I+D W
Sbjct: 293 HHSMTLTPDEVKS-LLLKYLDCRPQD-LPREVLTTNPRRLSIIA--ESIRD-GLATWDN- 346
Query: 250 KNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPS----HYE----FPNG 301
W + + K+ +++ E S+ L P+ ++ FP
Sbjct: 347 ---------WKHVNCDKL-----TTII--------ESSLNVLEPAEYRKMFDRLSVFPPS 384
Score = 41.4 bits (96), Expect = 4e-04
Identities = 37/253 (14%), Positives = 75/253 (29%), Gaps = 90/253 (35%)
Query: 91 MEI-QSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLEL- 148
M + K ++E + T S + + ++ K E L
Sbjct: 405 MVVVNKLHKYSLVEKQPK-----ESTIS--------IPSIYLE-----LKVKLENEYALH 446
Query: 149 --MFEKYNVPAFFLVKNAVLAAFANGRATGLVFDSGATHTSAIPVHDGYVLTHAIA---K 203
+ + YN+P FDS P D Y +H I K
Sbjct: 447 RSIVDHYNIPK--------------------TFDS---DDLIPPYLDQYFYSH-IGHHLK 482
Query: 204 SPLGGDYLTMQCKQFLQENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNLPEVTQSWHNY- 262
+ + +T+ FL D ++ +K + + +W+
Sbjct: 483 NIEHPERMTLFRMVFL-----DF------------------RFLEQK-IRHDSTAWNASG 518
Query: 263 SVKKVVQDFQ--QSVLQVSETPFDE--KSILNLPPSHYEFPNGYHQDFGCRALPYSRGSV 318
S+ +Q + + + ++ ++ +IL+ P E N + +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--NLICSKYTD---------L 567
Query: 319 VQNIANMQPGSGI 331
++ IA M I
Sbjct: 568 LR-IALMAEDEAI 579
Score = 41.0 bits (95), Expect = 5e-04
Identities = 43/298 (14%), Positives = 94/298 (31%), Gaps = 76/298 (25%)
Query: 92 EIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAP--------WNIRSKRE 143
+I S ++ ++++D + V D K I S E ++MS+ W + SK+E
Sbjct: 20 DILSVFEDAFVDNFD-CKDVQDMP--KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 144 KLLELMFE---KYNVPAFFLVKNAVLAAFAN-GRATGLVFDSGATHTSAIPVHDGYVLTH 199
++++ E + N FL+ + R ++ +++
Sbjct: 77 EMVQKFVEEVLRINYK--FLM-----SPIKTEQRQPSMMTRMYIEQRD--RLYND---NQ 124
Query: 200 AIAKSPLGGDYLTMQCKQFLQE----NNIDIIPPY-MVG-GK-----EAIKDKEPPK--- 245
AK + ++ +Q L E N+ I ++G GK + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 246 ----W------TRKKNLPEVTQS-WHNYSVKKVVQDFQQSVLQVSETPF---DEKSILNL 291
W + + E+ Q + ++ ++ S ++ L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 292 PPSHYEFPNGY-------------HQDFGCRALPYSRGSVVQNIANMQPGSGISPTDH 336
+ N + C+ L +R V + + + IS H
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Score = 35.6 bits (81), Expect = 0.027
Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 41/144 (28%)
Query: 75 NKYFI----DTNALYVARKGMEIQSY----MKE-GMIEDWDLFEKV-LDYTY--SKCIES 122
+ Y I D++ L S+ +K E LF V LD+ + K
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 123 GSEYHPVLMSEAPWNIRSKREKLLELMFEKY------NVPAF---------FLVK---NA 164
+ WN L + Y N P + FL K N
Sbjct: 511 ST----------AWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 165 VLAAFANGRATGLVFDSGATHTSA 188
+ + + + L+ + A A
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEA 583
Score = 29.8 bits (66), Expect = 1.4
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 254 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPS 294
E + H Y K ++ F+ + + FD K + ++P S
Sbjct: 10 ETGE--HQYQYKDILSVFEDAFVD----NFDCKDVQDMPKS 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.058
Identities = 83/506 (16%), Positives = 139/506 (27%), Gaps = 220/506 (43%)
Query: 6 ILYGGDEIGALV----FDVGSQSLR-----------VGYAQEDSP--KAEIPA-----VV 43
+ +G E LV F + SQ L+ G+A +D P AE+ V
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 44 GVVEDGGQ---------------------------TASIDTPMDVDVKPDTNNVTASGNK 76
+VE A + D + +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---- 125
Query: 77 YF------------IDTNALYVARKGMEIQSYMK---EGMIEDWDLFEKVLDYTYSKCIE 121
Y +AL+ A Q +G +D+ FE+ L Y
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--FEE-LRDLY----- 177
Query: 122 SGSEYHPVLMSEAPWNIRSKREKLLELMFEKYNVPAFF---------------------L 160
YH ++ I+ E L EL+ + F L
Sbjct: 178 --QTYHVLV---GDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 161 VKNAV------LAAFAN--------GRATGLVFD--SGAT-HTSAIPVHDGYVLTHAIAK 203
+ + + A+ G G + GAT H+ + V AIA+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL------VTAVAIAE 285
Query: 204 SP-------LGGDYLTM------QCKQ----------FLQ---ENNIDIIPPYM--VGG- 234
+ +T+ +C + L+ ENN +P M +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSPMLSISNL 344
Query: 235 -KEAIK---DKE-------------------------PPK-------WTRK-KNLPEVTQ 257
+E ++ +K PP+ RK K + Q
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 258 SWHNYSVKKVVQDFQQSVLQVSETPF--------DEKSILNLPPSHYEFPNG------YH 303
S +S +K+ F L V+ +PF + +L ++ F Y
Sbjct: 405 SRIPFSERKLK--FSNRFLPVA-SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 304 ----QDFGCRALPYSRGSVVQNIANM 325
D R L GS+ + I +
Sbjct: 462 TFDGSDL--RVL---SGSISERIVDC 482
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.57
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 24 SLRVGYAQEDSPKAEIPAVV 43
SL++ YA + +P I A +
Sbjct: 28 SLKL-YADDSAPALAIKATM 46
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein,
structural genomics, PSI- protein structure initiative;
HET: STE; 1.90A {Eubacterium ventriosum}
Length = 297
Score = 28.8 bits (65), Expect = 2.4
Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 216 KQFLQENNIDIIP-PYMVGGKEAIKDKE 242
K++L+++++ I+P G+ +D
Sbjct: 17 KEYLEKHDVTIVPLSVSFDGETYYRDGV 44
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel,
hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga
maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A
3azs_A* 3azr_A* 3azt_A*
Length = 317
Score = 28.7 bits (64), Expect = 2.8
Identities = 13/120 (10%), Positives = 30/120 (25%), Gaps = 11/120 (9%)
Query: 48 DGGQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKE--GMIEDW 105
+ I + V N + + Y A + ++ G +D
Sbjct: 169 GTAEWGGISALEKLSVPKWEKNSIVTIHYYNPFEFTHQGAEWVEGSEKWLGRKWGSPDDQ 228
Query: 106 DLFEKVLDYTYSKCIESGSEYHPVLMSE---APWNIRSKREKLLELM---FEKYNVPAFF 159
+ ++ ++ P+ + E R K + EK +
Sbjct: 229 KHLIEEFNFIEEWSKKNK---RPIYIGEFGAYRKADLESRIKWTSFVVREMEKRRWSLAY 285
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.217.1.1
Length = 64
Score = 26.2 bits (58), Expect = 3.7
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 76 KYFIDTNALYVARKGMEIQSYMKE 99
+ +D A +VAR G E ++ +++
Sbjct: 4 RNIVDKTASFVARNGPEFEARIRQ 27
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase,
folate biosynthesis; 1.8A {Streptococcus pneumoniae}
PDB: 2veg_A*
Length = 314
Score = 26.8 bits (60), Expect = 9.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 14 GALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVE----DGGQTASIDT 57
GA + D+G +S R G + + EI VV V++ + SIDT
Sbjct: 46 GASMLDIGGESTRPG-SSYVEIEEEIQRVVPVIKAIRKESDVLISIDT 92
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, RNA
binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Length = 88
Score = 25.6 bits (56), Expect = 9.7
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 50 GQTASIDTPMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKE 99
+ +++ V P T + I+ A +VA G E++ E
Sbjct: 6 SGEEDYEQWLEIKVSPPEGAET----RRVIEKLARFVAEGGPELEKVAME 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.399
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,273,738
Number of extensions: 318540
Number of successful extensions: 810
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 26
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)