RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3377
(336 letters)
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 133 bits (335), Expect = 8e-39
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 12 EIGALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVT 71
+ A V D G+ ++GYA P+ IP+ + + E D
Sbjct: 2 RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES---------AKVGDQAQRRVMKG 52
Query: 72 ASGNKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLM 131
+FI A + + + ++ G++EDWDL E+ ++ K + + E H L+
Sbjct: 53 VDDLDFFIGDEA--IEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLL 110
Query: 132 SEAPWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANGRATG 176
+E P N RE E+MFE +NVP ++ AVLA A+ +
Sbjct: 111 TEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ 155
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 124 bits (312), Expect = 1e-35
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 15 ALVFDVGSQSLRVGYAQEDSPKAEIPAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASG 74
ALV D GS ++ G+A +D+P+A P++VG G V
Sbjct: 1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVM-----------------VGMGQ 43
Query: 75 NKYFIDTNALYVARKGMEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYHPVLMSEA 134
++ A R + ++ ++ G+I +WD EK+ +T+ + E HP L++EA
Sbjct: 44 KDSYVGDEAQS-KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEA 102
Query: 135 PWNIRSKREKLLELMFEKYNVPAFFLVKNAVLAAFANG 172
P N ++ REK+ ++MFE +NVPA ++ AVL+ +A+G
Sbjct: 103 PLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 84.8 bits (209), Expect = 1e-19
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 175 TGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGG 234
TG V DSG T IPV +GYV+ I P+ G +T +Q L++ + I P +
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLET 63
Query: 235 KEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPS 294
+A+ + ++Y +V++F + S+ I +
Sbjct: 64 AKAV------------------KERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKK 105
Query: 295 HYEFPNGYHQDFGCRAL 311
+ GY + G
Sbjct: 106 EFSIDVGYERFLGPEIF 122
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 76.7 bits (188), Expect = 5e-17
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 30/135 (22%)
Query: 173 RATGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMV 232
R TG+V DSG T +P+++GY L HAI + L G LT + L E +
Sbjct: 1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60
Query: 233 GGKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLP 292
IK+K + V DF+ + + + EKS
Sbjct: 61 EIVRDIKEK----------------------LCYVALDFENEMATAASSSSLEKS----- 93
Query: 293 PSHYEFPNGYHQDFG 307
YE P+G G
Sbjct: 94 ---YELPDGQVITIG 105
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 69.0 bits (168), Expect = 1e-14
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 176 GLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQENNIDIIPPYMVGGK 235
G+V DSG T PV++G+ L H + + G +T + L
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSAD---F 57
Query: 236 EAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKV--------VQDFQQSVLQVSETPFDEKS 287
E ++ + N+ + + +V + + E F
Sbjct: 58 ETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHL 117
Query: 288 ILNLPPSHYE 297
I E
Sbjct: 118 INVEGVGVAE 127
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 29.4 bits (66), Expect = 0.13
Identities = 3/37 (8%), Positives = 16/37 (43%)
Query: 91 MEIQSYMKEGMIEDWDLFEKVLDYTYSKCIESGSEYH 127
Q + + + + + + +++ ++ K +Y+
Sbjct: 9 YNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYY 45
>d1v1oa2 d.15.6.1 (A:109-213) Exotoxin 1 (SET1, Superantigen-like
protein 7) {Staphylococcus aureus [TaxId: 1280]}
Length = 105
Score = 28.2 bits (63), Expect = 0.57
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 40 PAVVGVVEDGGQTASIDTPMDVDVKPDTNNVTASG-----NKYFIDTNALYVA--RKGME 92
P V V ASID+ ++ + ++ LY + G +
Sbjct: 9 PLFVNKVNGEDLDASIDS-----FLIQKEEISLKELDFKIRQQLVNNYGLYKGTSKYG-K 62
Query: 93 IQSYMKEGMIEDWDLFEKVLDYTYSKCIES 122
I +K+ + DL +K+ + S
Sbjct: 63 IIINLKDENKVEIDLGDKLQFERMGDVLNS 92
>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium,
strain lt2 [TaxId: 90371]}
Length = 379
Score = 26.5 bits (57), Expect = 4.9
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 12/54 (22%)
Query: 153 YNVPAFFLVKNAVLAAFANGR--------ATGLVF----DSGATHTSAIPVHDG 194
+ +PA + FA+ R D G T I +++
Sbjct: 33 FRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYND 86
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 24.8 bits (54), Expect = 6.6
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 58 PMDVDVKPDTNNVTASGNKYFIDTNALYVARKGMEIQSYMKE 99
+++ V P T + I+ A +VA G E++ E
Sbjct: 14 WLEIKVSPPEGAET----RRVIEKLARFVAEGGPELEKVAME 51
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 261
Score = 26.0 bits (57), Expect = 6.8
Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 35/152 (23%)
Query: 125 EYHPVLMSEAPWNIRSKREKLLE------LMFE---------KYNVPAFFLVKNAVLAAF 169
+Y +M+ A + + LE L+ E ++ + A + A
Sbjct: 40 DYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETCKKAA 99
Query: 170 ANGRA---------TGLVFDSGATHTSAIPVHDGYVLTHAIAKSPLGGDYLTMQCKQFLQ 220
A + G V + + A V + G + +
Sbjct: 100 AKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEAL-----------GVKTINIPGCPPNP 148
Query: 221 ENNIDIIPPYMVGGKEAIKDKEPPKWTRKKNL 252
N + + + G + + PK + +
Sbjct: 149 INFVGAVVHVLTKGIPDLDENGRPKLFYGELV 180
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 278
Score = 25.8 bits (56), Expect = 8.6
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 103 EDWDLFEKVLDYTYSKCIESGSEYHPVLMSEAPWNIRSKREKLLELMFEKY 153
+ E +LD I E+HP +M+ + ++ E +
Sbjct: 24 VHPRIKEILLDV-----ISL--EFHPTVMASEGEMALAHMYEIAEKFNGNF 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.399
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,282,065
Number of extensions: 59849
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 16
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)