Query psy3378
Match_columns 239
No_of_seqs 178 out of 667
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 23:30:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d7i_A Polypeptide N-acetylgal 99.9 4.3E-25 1.5E-29 210.9 5.1 111 120-237 48-158 (570)
2 2ffu_A Ppgalnact-2, polypeptid 99.8 4.5E-22 1.5E-26 185.2 4.1 92 145-237 21-112 (501)
3 1xhb_A Polypeptide N-acetylgal 99.8 3.2E-19 1.1E-23 163.9 8.4 74 162-236 1-74 (472)
4 2z86_A Chondroitin synthase; G 98.7 3.2E-08 1.1E-12 93.7 8.6 95 140-236 21-136 (625)
5 3ckj_A Putative uncharacterize 97.9 1.6E-05 5.3E-10 70.3 5.9 46 189-236 46-91 (329)
6 2z86_A Chondroitin synthase; G 97.7 4.4E-05 1.5E-09 72.2 6.5 46 188-236 372-417 (625)
7 3f1y_A Mannosyl-3-phosphoglyce 97.6 4.4E-05 1.5E-09 70.5 5.1 75 154-236 62-139 (387)
8 2fy7_A Beta-1,4-galactosyltran 97.4 0.00017 5.8E-09 64.1 6.2 52 174-235 55-109 (287)
9 4hg6_A Cellulose synthase subu 97.3 0.00016 5.4E-09 72.2 4.1 50 187-236 136-185 (802)
10 4fix_A UDP-galactofuranosyl tr 96.8 0.0006 2.1E-08 67.1 3.7 46 189-235 178-224 (657)
11 2wvl_A Mannosyl-3-phosphoglyce 96.6 0.0014 4.9E-08 61.8 4.5 41 189-235 51-91 (391)
12 2nxv_A ATP synthase subunits r 96.1 0.011 3.8E-07 49.9 6.4 43 189-235 14-58 (249)
13 2zu9_A Mannosyl-3-phosphoglyce 95.8 0.0077 2.6E-07 56.8 4.9 40 191-236 51-90 (394)
14 3lw6_A FI08434P, beta-4-galact 41.3 27 0.00092 31.7 4.4 50 174-232 41-92 (287)
15 3arc_I Photosystem II reaction 27.2 83 0.0028 20.5 3.8 21 30-50 2-22 (38)
No 1
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.90 E-value=4.3e-25 Score=210.92 Aligned_cols=111 Identities=51% Similarity=0.848 Sum_probs=100.2
Q ss_pred ccccCcCCCCCCCceeecCCCCCHHHHHHHHhcccccccchhhcccccCCCCCCCCCCccccCccccCCCCCceeEEEEe
Q psy3378 120 DEDKNKMQYGEWGKPVILPQNLSSDIKKLVEEGWQRNAFNQYVSDLISVKRKLPDPRDEWCKVPGRYLKNLPATSVIICF 199 (239)
Q Consensus 120 ~~d~~~~~pGE~G~~v~l~~~~~~e~k~~~e~~~~~~~FN~~~SD~Isl~RslpD~R~~~Ck~~~~Y~~~LP~~SVII~F 199 (239)
+.|..+.+|||+|+||.+++. + +.++.|++++||+++||+|+++|++||+|++.|+. ..|+.++|.+||||++
T Consensus 48 ~~~~~~~~~g~~g~~~~~~~~----~--~~~~~~~~~~~n~~~sd~i~l~R~~~d~r~~~~~~-~~~~~~~P~vSVIIp~ 120 (570)
T 2d7i_A 48 RRDAQRVGNGEQGRPYPMTDA----E--RVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNS-KRYLETLPNTSIIIPF 120 (570)
T ss_dssp HHHHTCCSTTGGGCCCCCCTT----T--TSSHHHHTTSSCHHHHHTSCTTCCCCCCSCGGGGT-CCEESSCCCEEEEEEE
T ss_pred cccccCCCCCCCCCceECCHH----H--HHHHHHHHcCCCHHHHhccCCCccCCCCCCcccee-cccCCCCCCeEEEEEE
Confidence 344677899999999998531 2 23677999999999999999999999999999999 7999999999999999
Q ss_pred ecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCCCC
Q psy3378 200 HNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMRK 237 (239)
Q Consensus 200 hNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~~~ 237 (239)
|||+|++|.|+|+||+++|++.++.|||+|||+|+.+.
T Consensus 121 yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~t 158 (570)
T 2d7i_A 121 HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREH 158 (570)
T ss_dssp SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGG
T ss_pred CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHH
Confidence 99999999999999999999998889999999998765
No 2
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.84 E-value=4.5e-22 Score=185.19 Aligned_cols=92 Identities=51% Similarity=0.786 Sum_probs=86.2
Q ss_pred HHHHHHhcccccccchhhcccccCCCCCCCCCCccccCccccCCCCCceeEEEEeecChhHHHHHHHHHHhhcCcccccc
Q psy3378 145 IKKLVEEGWQRNAFNQYVSDLISVKRKLPDPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLK 224 (239)
Q Consensus 145 ~k~~~e~~~~~~~FN~~~SD~Isl~RslpD~R~~~Ck~~~~Y~~~LP~~SVII~FhNEa~StLLRTVhSVl~rTP~~LLk 224 (239)
+++..+++|++++||+++||+|+++|++||+|++.|+. ..|+.++|.+||||++|||++++|.|+|+||++++++.+..
T Consensus 21 ~~~~~~~~~~~~~~n~~~s~~i~~~r~~~d~r~~~~~~-~~~~~~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~ 99 (501)
T 2ffu_A 21 MVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQR-KQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIK 99 (501)
T ss_dssp CCCTTSCTTTTTSSCHHHHHHSCTTCCCCCCSCGGGGG-CCCCSSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEE
T ss_pred hhhhhhhhHHhcCcCHHHHcccCCCCcCCCCChhHhcc-ccCCcCCCCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhce
Confidence 44567788999999999999999999999999999999 89999999999999999999999999999999999998888
Q ss_pred eEEEEeCCCCCCC
Q psy3378 225 EIILVDDYSDMRK 237 (239)
Q Consensus 225 EIILVDD~S~~~~ 237 (239)
|||+|||+|+.+.
T Consensus 100 EIIvVDDgS~D~t 112 (501)
T 2ffu_A 100 EIILVDDYSNDPE 112 (501)
T ss_dssp EEEEEECSCSCTH
T ss_pred eEEEEECCCCchH
Confidence 9999999998764
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.77 E-value=3.2e-19 Score=163.92 Aligned_cols=74 Identities=59% Similarity=0.960 Sum_probs=64.8
Q ss_pred hcccccCCCCCCCCCCccccCccccCCCCCceeEEEEeecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCCC
Q psy3378 162 VSDLISVKRKLPDPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMR 236 (239)
Q Consensus 162 ~SD~Isl~RslpD~R~~~Ck~~~~Y~~~LP~~SVII~FhNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~~ 236 (239)
+||+||++|+|||+|++.|+. +.|++++|.+||||++|||+|++|.|+|+|+++++++.+..|||+|||+|+.+
T Consensus 1 ~s~~~~~~r~~~d~r~~~c~~-~~~~~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~ 74 (472)
T 1xhb_A 1 ASEMIALNRSLPDVRLEGCKT-KVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERD 74 (472)
T ss_dssp -------CCCCCCCSCGGGGT-CCCCSCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCG
T ss_pred CCccccCCCCCCCCCChhhcc-CcCCcCCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcH
Confidence 699999999999999999999 89999999999999999999999999999999999998888999999999875
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.70 E-value=3.2e-08 Score=93.70 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHhcccccc----cchhhcc------cccCCCCCCCCCCccccC--------c---cccCCCCCceeEEEE
Q psy3378 140 NLSSDIKKLVEEGWQRNA----FNQYVSD------LISVKRKLPDPRDEWCKV--------P---GRYLKNLPATSVIIC 198 (239)
Q Consensus 140 ~~~~e~k~~~e~~~~~~~----FN~~~SD------~Isl~RslpD~R~~~Ck~--------~---~~Y~~~LP~~SVII~ 198 (239)
.+++++++...+.|++++ .|+.+++ +.+++|..+......|.- . ......+|.+||||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~vsviIp 100 (625)
T 2z86_A 21 SLNEVEKNEIISKYREITAKKSERAELKEVEPIPLDWPSDLTLPPLPESTNDYVWAGKRKELDDYPRKQLIIDGLSIVIP 100 (625)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCCEECCCCCCCSSCTTCCTTCCCCCCCSSTTCHHHHHTCCCC-------CCCCCEEEEEE
T ss_pred cccchhHHHHHHHHHHHhhhccccccccccCCCCCCCcccCCCCCCCCCccccchhhhcccccCCCcccccCCcEEEEEe
Confidence 357888888888888777 7888887 778888876666554431 0 112456799999999
Q ss_pred eecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCCC
Q psy3378 199 FHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMR 236 (239)
Q Consensus 199 FhNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~~ 236 (239)
.|||+ ..|.+++.|++.++... --|||+|||+|+.+
T Consensus 101 ~~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~ 136 (625)
T 2z86_A 101 TYNRA-KILAITLACLCNQKTIY-DYEVIVADDGSKEN 136 (625)
T ss_dssp ESSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSC
T ss_pred cCCcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchh
Confidence 99996 79999999999996543 35999999999864
No 5
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=97.87 E-value=1.6e-05 Score=70.30 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=39.0
Q ss_pred CCCceeEEEEeecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCCC
Q psy3378 189 NLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMR 236 (239)
Q Consensus 189 ~LP~~SVII~FhNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~~ 236 (239)
..|.+||||+.|||+ ..|-+++.|+++++-+. --|||+|||+|+.+
T Consensus 46 ~~~~vSViIp~yN~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~ 91 (329)
T 3ckj_A 46 AGRTISVVLPALDEE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDD 91 (329)
T ss_dssp TTCCEEEEEEESSCT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSS
T ss_pred cCCcEEEEEeeCCCH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCch
Confidence 468999999999997 68999999999998332 24999999999864
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=97.71 E-value=4.4e-05 Score=72.20 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=40.8
Q ss_pred CCCCceeEEEEeecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCCC
Q psy3378 188 KNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMR 236 (239)
Q Consensus 188 ~~LP~~SVII~FhNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~~ 236 (239)
...|.+||||+.||++ ..|.+++.||+++|.+.+ |||+|||+|+.+
T Consensus 372 ~~~~~vsiii~~yn~~-~~l~~~l~s~~~q~~~~~--eiivvdd~S~d~ 417 (625)
T 2z86_A 372 KRVPLVSIYIPAYNCS-KYIVRCVESALNQTITDL--EVCICDDGSTDD 417 (625)
T ss_dssp CSSCSEEEEEEESSCT-TTHHHHHHHHHSSSCCSE--EEEEEEESCSSS
T ss_pred ccCCeEEEEEeCCCCH-HHHHHHHHHHHhCcCCCe--EEEEEECcCChh
Confidence 3578999999999995 799999999999997765 999999999864
No 7
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.63 E-value=4.4e-05 Score=70.54 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=48.6
Q ss_pred cccccchhhcccccCCCCCCCCCCccccCccccCCCCCceeEEEEeecChhHHHHHHHHHHhh---cCcccccceEEEEe
Q psy3378 154 QRNAFNQYVSDLISVKRKLPDPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLD---RSPAHLLKEIILVD 230 (239)
Q Consensus 154 ~~~~FN~~~SD~Isl~RslpD~R~~~Ck~~~~Y~~~LP~~SVII~FhNEa~StLLRTVhSVl~---rTP~~LLkEIILVD 230 (239)
....++.|++.+....+..+-.+...++. ...|.+||||+.|||+ .+|-+++.|+.. ++|... |||+||
T Consensus 62 ~~~~~~~wl~~~~~~~~~~~~~~l~~~~~-----~~~p~vSVVIP~yNe~-~~l~~~l~sl~~~l~~~~~~~--EIIVVD 133 (387)
T 3f1y_A 62 GPASAAEWFRQRSYDYGQFPPEDLARRKR-----ELGLTVSAVLPSRNVA-DTVGGIIDEIHALNERAPLID--QILVVD 133 (387)
T ss_dssp CCSSHHHHHHHHEEEGGGSCHHHHHHHHH-----HHTCCEEEEEEESSCT-TTHHHHHHHHHHHHHHSCCCS--EEEEEE
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHhhhh-----cCCCeEEEEEEcCCCH-HHHHHHHHHHHHHHhcCCCCe--EEEEEc
Confidence 35566777764443333322111111222 2368999999999996 578888888865 566554 999999
Q ss_pred CCCCCC
Q psy3378 231 DYSDMR 236 (239)
Q Consensus 231 D~S~~~ 236 (239)
|+|+++
T Consensus 134 DgStD~ 139 (387)
T 3f1y_A 134 ADSEDG 139 (387)
T ss_dssp CSCSSS
T ss_pred CcCCcc
Confidence 999864
No 8
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=97.44 E-value=0.00017 Score=64.06 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=40.8
Q ss_pred CCCCccccCccccCCCCCceeEEEEeecChhHHHHHHHHHHh---hcCcccccceEEEEeCCCCC
Q psy3378 174 DPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVL---DRSPAHLLKEIILVDDYSDM 235 (239)
Q Consensus 174 D~R~~~Ck~~~~Y~~~LP~~SVII~FhNEa~StLLRTVhSVl---~rTP~~LLkEIILVDD~S~~ 235 (239)
.+++..|.. .|.+||||++||++ ..|.+++.|++ +++...+ |||+|||.+|.
T Consensus 55 ~~~p~~c~~-------~~~VSIIIP~yN~~-~~L~~~L~sl~~~l~q~~~~~--EIiVVdds~d~ 109 (287)
T 2fy7_A 55 RYAPRDCVS-------PHKVAIIIPFRNRQ-EHLKYWLYYLHPVLQRQQLDY--GIYVINQAGDT 109 (287)
T ss_dssp EECCSSSBC-------SCEEEEEEEESSCH-HHHHHHHHHHHHHHHHTTCEE--EEEEEEECSSS
T ss_pred cCcCCCCCc-------CCcEEEEEeeCCCH-HHHHHHHHHHHHHHHHhcCCc--eEEEEEeCCCC
Confidence 345556765 58999999999995 68899999998 6776555 99999996553
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=97.25 E-value=0.00016 Score=72.22 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCCCCceeEEEEeecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCCC
Q psy3378 187 LKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMR 236 (239)
Q Consensus 187 ~~~LP~~SVII~FhNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~~ 236 (239)
.+++|++||||+-|||+-..+-+++.|+++++-+.--.|||+|||+|+++
T Consensus 136 ~~~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~ 185 (802)
T 4hg6_A 136 PEELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQ 185 (802)
T ss_dssp TTTCCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHH
T ss_pred ccCCCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcc
Confidence 45689999999999999877788999999998665334999999999753
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=96.82 E-value=0.0006 Score=67.06 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=38.4
Q ss_pred CCCceeEEEEeecChhHHHHHHHHHHhhcCc-ccccceEEEEeCCCCC
Q psy3378 189 NLPATSVIICFHNEAWSVLLRTVHSVLDRSP-AHLLKEIILVDDYSDM 235 (239)
Q Consensus 189 ~LP~~SVII~FhNEa~StLLRTVhSVl~rTP-~~LLkEIILVDD~S~~ 235 (239)
.-|.+||||+-||++ ..|.+++.|+++++. ..-..|||+|||+|++
T Consensus 178 ~~pkVSVVIptYN~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 178 GTANIAVGIPTFNRP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp SCCCEEEECCBSSCH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCeEEEEEEecCCH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 347999999999995 699999999999884 2234599999999975
No 11
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=96.62 E-value=0.0014 Score=61.84 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCceeEEEEeecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCC
Q psy3378 189 NLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDM 235 (239)
Q Consensus 189 ~LP~~SVII~FhNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~ 235 (239)
.+...||||+-|||.- +.+.||++++|... |||||||+|.+
T Consensus 51 i~~klSIVVPvYNEe~----~lLesVl~qi~~d~--eIIlVdDGS~D 91 (391)
T 2wvl_A 51 VLEQTAIVVPTRNERL----KLLEGVLSGIPHEA--LILVASNSSPD 91 (391)
T ss_dssp HHTTEEEEEEESSCCH----HHHHHHHHTSCTTS--EEEEEECCCHH
T ss_pred HHhceEEEEeccCcHH----HHHHHHHhcCCCCc--eEEEEECCCCC
Confidence 3568999999999985 56999999999987 99999999953
No 12
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=96.06 E-value=0.011 Score=49.95 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=31.4
Q ss_pred CCCceeEEEEeecChhHHHHHHHHHHhhc--CcccccceEEEEeCCCCC
Q psy3378 189 NLPATSVIICFHNEAWSVLLRTVHSVLDR--SPAHLLKEIILVDDYSDM 235 (239)
Q Consensus 189 ~LP~~SVII~FhNEa~StLLRTVhSVl~r--TP~~LLkEIILVDD~S~~ 235 (239)
+.|.+|||++ ||+ ...|.+++.|+... .+.. -|||+||+.|+.
T Consensus 14 ~~~~iSII~~-yN~-~~~l~~~l~sl~~sl~~q~~--~EiIVVDn~s~d 58 (249)
T 2nxv_A 14 STLMFSVCSL-VRD-QAKYDRLLESFERFGFTPDK--AEFLAADNREGN 58 (249)
T ss_dssp CCCSEEEEEE-ESC-HHHHHHHHHHHHHTTCCTTT--EEEEEEECTTSC
T ss_pred CcceEEEEEe-eCC-HHHHHHHHHHHHHhccCCCc--EEEEEEECCCCC
Confidence 4568898755 998 57899999977542 2222 599999999874
No 13
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=95.85 E-value=0.0077 Score=56.77 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=30.8
Q ss_pred CceeEEEEeecChhHHHHHHHHHHhhcCcccccceEEEEeCCCCCC
Q psy3378 191 PATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMR 236 (239)
Q Consensus 191 P~~SVII~FhNEa~StLLRTVhSVl~rTP~~LLkEIILVDD~S~~~ 236 (239)
.++||||+.|||+-++ |..||...|.. -|||+|||+|..+
T Consensus 51 ~~iSVVIP~yNEE~~l----I~~vL~~i~~~--~eIIvVDDgSrD~ 90 (394)
T 2zu9_A 51 GKMAVIVPMKNEKLHL----VDGVLKAIPHK--CPIIIVSNSKREG 90 (394)
T ss_dssp TTEEEEEEESSCCHHH----HHHHHHHSCTT--SCEEEEECCCCSS
T ss_pred CCEEEEEecCcccHHH----HHHHHHcCCCC--cEEEEEECcCccc
Confidence 3799999999999543 66667766653 4999999999543
No 14
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=41.27 E-value=27 Score=31.67 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=34.9
Q ss_pred CCCCccccCccccCCCCCceeEEEEeec--ChhHHHHHHHHHHhhcCcccccceEEEEeCC
Q psy3378 174 DPRDEWCKVPGRYLKNLPATSVIICFHN--EAWSVLLRTVHSVLDRSPAHLLKEIILVDDY 232 (239)
Q Consensus 174 D~R~~~Ck~~~~Y~~~LP~~SVII~FhN--Ea~StLLRTVhSVl~rTP~~LLkEIILVDD~ 232 (239)
-++++.|.. .-.+.|||+|.| |++..+|..+|-.|.|.--+. .|++|+-.
T Consensus 41 ~~~P~~c~~-------~~kvAIIIPyRdR~~hL~~fl~~lhp~L~rQ~l~y--~I~VieQ~ 92 (287)
T 3lw6_A 41 RYTPMDGAS-------VHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAH--HIFVLNQV 92 (287)
T ss_dssp ------CCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEE--EEEEEEEC
T ss_pred EECCCccCC-------cceEEEEEEeCCHHHHHHHHHHHHHHHHHHcCCce--EEEEEecC
Confidence 345777887 238999999985 456788899999999985554 78888864
No 15
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=27.20 E-value=83 Score=20.52 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q psy3378 30 VVLKLILLVCLIWLTVAALLF 50 (239)
Q Consensus 30 ~~~Klill~~~vWf~v~~~~y 50 (239)
.++|+..-+.++.|..+|.+.
T Consensus 2 ltLKi~Vy~vV~ffvsLFiFG 22 (38)
T 3arc_I 2 ETLKITVYIVVTFFVLLFVFG 22 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEeeehhHHHHHHHHHHcc
Confidence 478999988888887777665
Done!