RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3378
(239 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 144 bits (363), Expect = 2e-40
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 5/114 (4%)
Query: 122 DKNKMQYGEWGKPVILPQNLSSDIKKLVEEGWQRNAFNQYVSDLISVKRKLPDPRDEWCK 181
D K+++ ++ + + + + ++ + RN FNQ SD + + R +PD R + C+
Sbjct: 2 DALKVRWPDFNQEAYV----GGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQ 57
Query: 182 VPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDM 235
++ +LPATSV+I FHNEA S LLRTV SVL +SP HL+KEIILVDDYS+
Sbjct: 58 RK-QWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSND 110
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 134 bits (339), Expect = 1e-36
Identities = 60/157 (38%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 79 DDNDNLIQPVAQAQIAETPSAETVDKNADKMVLHAPEKGEFDEDKNKMQYGEWGKPVILP 138
+ Q + + H E D ++ GE G+P +
Sbjct: 9 GSGAAVAPAAGQGSHSRQKKTFFLGDGQKLKDWHDKEAIR--RDAQRVGNGEQGRPYPMT 66
Query: 139 QNLSSDIKKLVEEGWQRNAFNQYVSDLISVKRKLPDPRDEWCKVPGRYLKNLPATSVIIC 198
+ V++ ++ N FN YVSD IS+ R LPD R C RYL+ LP TS+II
Sbjct: 67 D------AERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCN-SKRYLETLPNTSIIIP 119
Query: 199 FHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDM 235
FHNE WS LLRTVHSVL+RSP L+ EI+LVDD+SD
Sbjct: 120 FHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR 156
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 121 bits (305), Expect = 2e-32
Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 163 SDLISVKRKLPDPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHL 222
S++I++ R LPD R E CK Y NLP TSV+I FHNEAWS LLRTVHSV++RSP H+
Sbjct: 2 SEMIALNRSLPDVRLEGCKTK-VYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHM 60
Query: 223 LKEIILVDDYSDMR 236
++EI+LVDD S+
Sbjct: 61 IEEIVLVDDASERD 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 4e-06
Identities = 53/280 (18%), Positives = 83/280 (29%), Gaps = 92/280 (32%)
Query: 17 PSRFYIYFLRRRFVVLKLILLVCLIWLTVAALLFMEDRNRSGVVIESLDNLNNVDRQSLK 76
P + Y L + LI ++ L V A G + L + + +
Sbjct: 226 PDKDY---LLSIPISCPLIGVIQLAHYVVTA-------KLLGF---TPGELRSYLKGATG 272
Query: 77 NVDDNDNLIQPVAQAQIAETPSAETVDKNADKMV-----------LHAPEKG-EFDEDKN 124
+ L+ A A IAET S E+ + K + P ++
Sbjct: 273 HSQG---LV--TAVA-IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 125 KMQYGEWGKP-----VI-LPQN-LSSDIKKL---VEEGWQ-----RNAFNQYV-----SD 164
++ E G P + L Q + + K + G Q N V
Sbjct: 327 SLENNE-GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 165 LISV-----KRKLPDPRDEWCKVPG---------RYLKNLPATSVIICFHNEAWSVLLRT 210
L + K K P D+ ++P R+ LP S FH S LL
Sbjct: 386 LYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRF---LPVASP---FH----SHLLV- 433
Query: 211 VHSVLDRSPAHLLKEIILVD------------DYSDMRKY 238
D L+K + + D SD+R
Sbjct: 434 --PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 31.4 bits (71), Expect = 0.27
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 170 RKLPDPRDEWCKVPGRYLKN--------LPATSVIICFHNEAWSVLLRTVHSVLD-RSPA 220
LP+ +++ R + + S++I +N A +L T+ + + ++
Sbjct: 64 PPLPESTNDYVWAGKRKELDDYPRKQLIIDGLSIVIPTYNRA-KILAITLACLCNQKTIY 122
Query: 221 HLLKEIILVDDYS 233
E+I+ DD S
Sbjct: 123 DY--EVIVADDGS 133
Score = 28.4 bits (63), Expect = 2.6
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 173 PDPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDY 232
P + K+ LK +P S+ I +N + ++R V S L+++ L E+ + DD
Sbjct: 357 PYFYRKKEKIESATLKRVPLVSIYIPAYNCSK-YIVRCVESALNQTITDL--EVCICDDG 413
Query: 233 S 233
S
Sbjct: 414 S 414
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.29
Identities = 25/232 (10%), Positives = 69/232 (29%), Gaps = 58/232 (25%)
Query: 36 LLVCLIWLTVAALLFMEDRNRS-----------GVVIE-SLDNLNNVDRQSL-------- 75
+ +I A + + +IE SL+ L + + +
Sbjct: 328 RRLSII----AESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 76 KNVDDNDNLIQPVAQAQIAETPSAETVDKNADKMVLHAPEKGEFDEDKNKMQYGEWGKPV 135
+ I + + I V +K+ + ++ +
Sbjct: 383 PSAH-----IPTILLSLIWFDVIKSDVMVVVNKLH----KYSLVEKQPKESTIS------ 427
Query: 136 ILPQNLSSDIKKLVEEGWQ--RNAFNQYVSDLISVKRK------LPDPRDE-WCKVPGRY 186
+P ++ ++K +E + R+ + Y ++ + +P D+ + G +
Sbjct: 428 -IP-SIYLELKVKLENEYALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 187 LKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSDMRKY 238
LKN+ + F + R + + +++ ++ Y
Sbjct: 481 LKNIEHPERMTLF--RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 30.1 bits (68), Expect = 0.57
Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 194 SVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYS 233
SVI+ +N++ + +++ S+L ++ + E+ ++DD S
Sbjct: 4 SVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNS 40
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 30.1 bits (67), Expect = 0.59
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 193 TSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYS 233
+ V+ F +E VLL V AH +L Y
Sbjct: 2 SLVVFPFKHEHPEVLLHNVRVAA----AHPRVHEVLCIGYE 38
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 28.9 bits (64), Expect = 1.4
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 194 SVIICFHNEAWSVLLRTVHSVLDRSPAH---LLKEIILVDDYS 233
SV++ +E T+ SV+D L+ E+I++D S
Sbjct: 51 SVVLPALDEE-----DTIGSVIDSISPLVDGLVDELIVLDSGS 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.2
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 71 DRQSLKNVDDNDNLIQP-----VA-QAQI 93
++Q+LK + + L +A +A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase,
transferase; HET: COA; 2.67A {Maricaulis maris} PDB:
3s7y_A 3s6h_A*
Length = 460
Score = 28.5 bits (64), Expect = 2.3
Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 64/173 (36%)
Query: 68 NNVDRQSLKNVDDNDNLIQPVAQAQIAETPSAETVDKNADKM------VLHAPEK----- 116
++ + + + A + ETP V+ NAD L K
Sbjct: 176 RHIHLDLVGSAARAGQA--AIL-ACLGETPDGTLVNINADVAVRALVHALQP-YKVVFLT 231
Query: 117 ---GEFDEDKNKMQYGEWGKPVILPQNLSSDIKKLVEEGWQRNAFNQYVSDLISVKRKLP 173
G DED + + I NL++D L++ W ++ +
Sbjct: 232 GTGGLLDEDGDIL-------SSI---NLATDFGDLMQADW------------VNGGMR-- 267
Query: 174 DPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEI 226
+ E K R L +LP SV P+ L +E+
Sbjct: 268 -LKLEEIK---RLLDDLPL------------------SSSVSITRPSELAREL 298
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas
campestris PV}
Length = 467
Score = 28.1 bits (63), Expect = 2.6
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 64/173 (36%)
Query: 68 NNVDRQSLKNVDDNDNLIQPVAQAQIAETPSAETVDKNADKM------VLHAPEK----- 116
V+ ++ ++ PV + ETPS + ++ NAD L K
Sbjct: 179 KAVNLAPIEASLQAGSI--PVI-TSLGETPSGQILNVNADFAANELVQELQP-YKIIFLT 234
Query: 117 ---GEFDEDKNKMQYGEWGKPVILPQNLSSDIKKLVEEGWQRNAFNQYVSDLISVKRKLP 173
G D + + I NLS++ L+++ W I+ +
Sbjct: 235 GTGGLLDAEGKLI-------DSI---NLSTEYDHLMQQPW------------INGGMR-- 270
Query: 174 DPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEI 226
+ E K L LP SV PA L KE+
Sbjct: 271 -VKIEQIK---DLLDRLPLE------------------SSVSITRPADLAKEL 301
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 28.0 bits (62), Expect = 3.5
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 191 PATSVIICFHN-EAWSVLLRTVHSVLDRSPAHLLKEIILVDDYS 233
++I+ ++N E + + + S+ + +I+V+D S
Sbjct: 2 NKLTIIVTYYNAEEY--ITGCLESIKQQRTQDF--NLIIVNDGS 41
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural
genomics consortium, SGC, transferase, PARP14 macro 2;
HET: AR6; 2.20A {Homo sapiens}
Length = 221
Score = 27.3 bits (61), Expect = 4.4
Identities = 4/41 (9%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 202 EAWSVLLRTVHSVLDRSPAHLLKEIILV---DDYSDMRKYL 239
+++ V ++ L+E+ + D+ +++ +
Sbjct: 168 IFAELIISEVFKFSSKNQLKTLQEVHFLLHPSDHENIQAFS 208
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 26.9 bits (60), Expect = 7.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 211 VHSVLDRSPAHLLKEI 226
VH+++D SP H+L+EI
Sbjct: 254 VHAIIDTSPKHILEEI 269
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core,
chromatin regulator, nucleus, DNA-binding protein,
phosphoprotein; 2.09A {Homo sapiens}
Length = 193
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 202 EAWSVLLRTVHSVLDRSPAHLLKEIILVD-DYSDMRKY 238
A V L+ + + D S A LK + + D + Y
Sbjct: 149 TAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIY 186
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 26.3 bits (57), Expect = 9.4
Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 193 TSVIICFHNEAWSV--LLRTVHSVLDRSPAHLLKEIILVDDYS 233
S ++ N A +V ++ +H++ +R+P L+ +I++VD S
Sbjct: 96 VSAVLPSRNVADTVGGIIDEIHALNERAP--LIDQILVVDADS 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,696,101
Number of extensions: 213903
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 29
Length of query: 239
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,160,982
Effective search space: 615825336
Effective search space used: 615825336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)