RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3378
         (239 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 88.1 bits (217), Expect = 4e-21
 Identities = 42/65 (64%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 170 RKLPDPRDEWCKVPGRYLKNLPATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILV 229
           R LPD R E CK    Y  NLP TSV+I FHNEAWS LLRTVHSV++RSP H+++EI+LV
Sbjct: 2   RSLPDVRLEGCK-TKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLV 60

Query: 230 DDYSD 234
           DD S+
Sbjct: 61  DDASE 65


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
           {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 193 TSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSD 234
           + V+  F +E   VLL  V  V    P   + E++ +    D
Sbjct: 1   SLVVFPFKHEHPEVLLHNV-RVAAAHP--RVHEVLCIGYERD 39


>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
           protein SpsA {Bacillus subtilis [TaxId: 1423]}
          Length = 255

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 191 PATSVIICFHNEAWSVLLRTVHSVLDRSPAHLLKEIILVDDYSD 234
           P  SVI+  +N++   + +++ S+L ++ +    E+ ++DD S+
Sbjct: 1   PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSN 41


>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 25.1 bits (55), Expect = 4.9
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 41 IWLTVAALLFMEDRNRSGVVIESLDNLNNVD 71
          +W  VA  L    R  + V +  ++     D
Sbjct: 25 VWGDVAERLEKPRRTHAEVNLGRIERYAQED 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 905,774
Number of extensions: 40827
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 6
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)