Query psy338
Match_columns 72
No_of_seqs 49 out of 51
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 23:33:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0577|consensus 99.9 5E-27 1.1E-31 194.9 9.1 71 1-71 485-555 (948)
2 PF12474 PKK: Polo kinase kina 94.1 0.61 1.3E-05 32.2 8.1 54 15-68 2-55 (142)
3 KOG0579|consensus 81.7 13 0.00029 33.3 8.7 62 4-65 795-856 (1187)
4 PF06631 DUF1154: Protein of u 79.8 5.6 0.00012 23.4 4.2 29 35-63 14-42 (47)
5 PF09731 Mitofilin: Mitochondr 74.6 42 0.00091 26.8 9.1 27 42-68 310-336 (582)
6 PF01765 RRF: Ribosome recycli 74.5 25 0.00053 24.1 6.9 21 37-57 138-158 (165)
7 PRK14161 heat shock protein Gr 68.6 40 0.00087 24.1 7.5 46 15-61 24-69 (178)
8 PF08112 ATP-synt_E_2: ATP syn 68.6 25 0.00054 21.6 6.3 40 19-58 13-52 (56)
9 PF04568 IATP: Mitochondrial A 66.6 19 0.00041 23.9 4.8 29 11-39 66-94 (100)
10 KOG0579|consensus 63.3 58 0.0013 29.5 8.3 58 11-68 813-870 (1187)
11 PRK14474 F0F1 ATP synthase sub 60.4 66 0.0014 23.7 9.6 62 9-70 56-117 (250)
12 PRK14155 heat shock protein Gr 60.1 66 0.0014 23.6 7.5 44 17-61 20-63 (208)
13 PF07324 DGCR6: DiGeorge syndr 57.2 63 0.0014 23.9 6.5 59 10-68 85-151 (196)
14 PRK14139 heat shock protein Gr 56.0 75 0.0016 22.9 7.5 41 19-60 41-81 (185)
15 PRK14151 heat shock protein Gr 55.2 74 0.0016 22.6 7.5 40 19-59 29-68 (176)
16 PF09726 Macoilin: Transmembra 54.4 1.4E+02 0.003 25.6 9.0 46 5-51 476-521 (697)
17 PRK14147 heat shock protein Gr 52.3 82 0.0018 22.3 7.5 26 35-60 42-67 (172)
18 PRK14159 heat shock protein Gr 51.7 87 0.0019 22.4 7.3 42 19-61 32-73 (176)
19 PRK14145 heat shock protein Gr 51.3 94 0.002 22.7 7.5 29 32-60 66-94 (196)
20 PF07798 DUF1640: Protein of u 51.2 79 0.0017 21.8 8.7 43 10-52 69-111 (177)
21 PF06696 Strep_SA_rep: Strepto 50.9 35 0.00077 17.7 3.2 20 40-59 2-21 (25)
22 PRK14163 heat shock protein Gr 49.6 1.1E+02 0.0023 22.8 8.1 41 19-60 49-89 (214)
23 PRK13461 F0F1 ATP synthase sub 47.7 83 0.0018 21.0 9.0 61 10-70 57-117 (159)
24 PRK14158 heat shock protein Gr 46.4 1.1E+02 0.0024 22.2 7.5 27 33-59 62-88 (194)
25 PRK14149 heat shock protein Gr 45.4 1.2E+02 0.0026 22.1 7.4 41 19-60 45-85 (191)
26 PRK14157 heat shock protein Gr 44.3 1.4E+02 0.0029 22.5 7.3 27 35-61 101-127 (227)
27 PRK13428 F0F1 ATP synthase sub 43.0 1.7E+02 0.0037 23.3 9.6 63 8-70 51-113 (445)
28 PRK14473 F0F1 ATP synthase sub 42.3 1E+02 0.0023 20.6 9.4 61 10-70 60-120 (164)
29 PRK14154 heat shock protein Gr 42.2 1.4E+02 0.003 22.1 7.5 42 18-60 60-101 (208)
30 PRK14146 heat shock protein Gr 40.7 1.5E+02 0.0032 21.9 7.5 27 35-61 78-104 (215)
31 PF07798 DUF1640: Protein of u 39.8 1.3E+02 0.0027 20.8 7.8 36 28-63 76-111 (177)
32 PF00430 ATP-synt_B: ATP synth 39.6 95 0.0021 19.4 9.0 61 10-70 51-111 (132)
33 PF12297 EVC2_like: Ellis van 39.3 2.2E+02 0.0048 23.6 8.1 53 9-64 194-246 (429)
34 PRK14143 heat shock protein Gr 39.2 1.6E+02 0.0035 22.0 8.1 23 35-57 91-113 (238)
35 PF10154 DUF2362: Uncharacteri 39.1 2.3E+02 0.005 23.7 8.0 34 29-62 157-190 (510)
36 PRK14148 heat shock protein Gr 39.1 1.5E+02 0.0033 21.6 7.5 27 33-59 62-88 (195)
37 COG0576 GrpE Molecular chapero 39.1 1.4E+02 0.0031 21.3 7.2 38 19-57 45-82 (193)
38 PRK14141 heat shock protein Gr 38.9 1.6E+02 0.0034 21.7 8.1 39 19-58 40-78 (209)
39 PRK14144 heat shock protein Gr 38.8 1.6E+02 0.0034 21.7 7.5 42 19-61 54-95 (199)
40 KOG0577|consensus 38.7 99 0.0021 27.7 5.8 56 10-65 847-902 (948)
41 PRK14162 heat shock protein Gr 38.5 1.5E+02 0.0033 21.5 7.5 29 32-60 60-88 (194)
42 PRK07352 F0F1 ATP synthase sub 38.1 1.3E+02 0.0028 20.5 9.7 61 10-70 71-131 (174)
43 PRK14156 heat shock protein Gr 37.4 1.5E+02 0.0034 21.2 7.3 23 35-57 51-73 (177)
44 PF07324 DGCR6: DiGeorge syndr 36.9 1.7E+02 0.0037 21.6 8.6 32 13-44 118-149 (196)
45 PRK14160 heat shock protein Gr 36.8 1.7E+02 0.0037 21.6 7.5 41 19-60 70-110 (211)
46 PRK07353 F0F1 ATP synthase sub 36.4 1.2E+02 0.0026 19.6 9.4 60 11-70 58-117 (140)
47 PF01765 RRF: Ribosome recycli 35.7 1.4E+02 0.0031 20.3 9.6 59 11-69 91-159 (165)
48 PF07851 TMPIT: TMPIT-like pro 35.5 1.2E+02 0.0026 23.9 5.5 61 7-68 12-78 (330)
49 PRK14472 F0F1 ATP synthase sub 35.4 1.4E+02 0.0031 20.3 9.4 60 11-70 71-130 (175)
50 CHL00019 atpF ATP synthase CF0 35.2 1.5E+02 0.0032 20.4 9.7 60 11-70 77-136 (184)
51 PF12474 PKK: Polo kinase kina 35.0 1.5E+02 0.0033 20.4 9.1 52 17-68 15-66 (142)
52 PRK14164 heat shock protein Gr 34.9 1.9E+02 0.0041 21.5 7.7 24 35-58 94-117 (218)
53 KOG3612|consensus 34.7 2.9E+02 0.0063 23.8 7.8 47 19-65 458-523 (588)
54 PF14643 DUF4455: Domain of un 34.0 2.4E+02 0.0053 22.5 7.2 49 10-58 355-403 (473)
55 PF09731 Mitofilin: Mitochondr 33.4 2.5E+02 0.0055 22.4 9.6 26 28-53 307-332 (582)
56 PRK13460 F0F1 ATP synthase sub 33.2 1.6E+02 0.0034 20.1 9.6 58 13-70 71-128 (173)
57 PF09755 DUF2046: Uncharacteri 32.6 2.4E+02 0.0051 22.3 6.6 31 26-56 161-191 (310)
58 PF06936 Selenoprotein_S: Sele 32.2 2E+02 0.0043 20.9 7.2 36 20-55 75-110 (190)
59 PRK14471 F0F1 ATP synthase sub 32.1 1.6E+02 0.0034 19.7 9.7 60 11-70 61-120 (164)
60 PRK13453 F0F1 ATP synthase sub 32.1 1.7E+02 0.0037 20.0 9.4 60 11-70 71-130 (173)
61 TIGR03321 alt_F1F0_F0_B altern 31.7 2E+02 0.0043 20.8 9.6 61 10-70 57-117 (246)
62 PF09755 DUF2046: Uncharacteri 31.7 2.5E+02 0.0054 22.2 6.6 41 17-57 120-163 (310)
63 PRK14153 heat shock protein Gr 31.0 2.1E+02 0.0046 20.8 7.3 24 35-58 57-80 (194)
64 PRK14150 heat shock protein Gr 30.9 2E+02 0.0044 20.6 7.6 30 30-59 57-86 (193)
65 PRK14158 heat shock protein Gr 28.3 2.4E+02 0.0051 20.5 6.0 23 25-47 65-87 (194)
66 PF14615 Rsa3: Ribosome-assemb 27.8 65 0.0014 18.7 2.2 18 41-58 7-24 (47)
67 CHL00118 atpG ATP synthase CF0 27.6 1.9E+02 0.0042 19.3 9.4 60 11-70 75-134 (156)
68 PF10498 IFT57: Intra-flagella 27.5 3E+02 0.0065 21.7 6.5 42 13-58 219-260 (359)
69 PF04772 Flu_B_M2: Influenza B 27.5 1E+02 0.0022 20.9 3.3 22 33-54 45-66 (109)
70 COG0576 GrpE Molecular chapero 27.4 2.3E+02 0.0051 20.2 5.5 25 21-45 57-81 (193)
71 KOG1265|consensus 27.1 1E+02 0.0022 28.4 4.1 29 36-64 950-978 (1189)
72 PRK08475 F0F1 ATP synthase sub 25.7 2.3E+02 0.0049 19.5 9.1 60 11-70 75-134 (167)
73 KOG4807|consensus 25.7 3.3E+02 0.0072 23.2 6.6 50 11-60 357-406 (593)
74 PRK14142 heat shock protein Gr 25.3 1.6E+02 0.0035 22.1 4.4 21 25-45 58-78 (223)
75 PRK14142 heat shock protein Gr 24.9 3E+02 0.0066 20.7 7.1 32 32-63 54-85 (223)
76 PRK13454 F0F1 ATP synthase sub 24.3 2.5E+02 0.0054 19.5 9.6 58 12-69 85-142 (181)
77 COG2825 HlpA Outer membrane pr 24.1 2.6E+02 0.0056 19.6 9.4 29 7-35 48-76 (170)
78 PF15397 DUF4618: Domain of un 24.1 3.3E+02 0.0072 20.8 6.7 33 12-44 133-165 (258)
79 KOG2264|consensus 24.1 4.4E+02 0.0094 23.6 7.2 50 6-56 82-134 (907)
80 PRK14147 heat shock protein Gr 23.4 2.7E+02 0.0059 19.6 6.2 22 25-46 43-64 (172)
81 cd00446 GrpE GrpE is the adeni 22.4 2.4E+02 0.0051 18.5 5.6 23 24-46 9-31 (137)
82 KOG1265|consensus 22.3 2.2E+02 0.0049 26.4 5.3 28 6-33 942-969 (1189)
83 PRK14143 heat shock protein Gr 22.2 3.4E+02 0.0074 20.3 6.5 23 24-46 91-113 (238)
84 PF07352 Phage_Mu_Gam: Bacteri 21.9 2.6E+02 0.0056 18.7 4.6 32 14-45 14-45 (149)
85 PF02344 Myc-LZ: Myc leucine z 21.0 1.7E+02 0.0036 16.2 3.6 13 23-35 3-15 (32)
86 KOG3312|consensus 20.6 1.7E+02 0.0038 21.6 3.7 20 6-25 34-53 (186)
87 PF04420 CHD5: CHD5-like prote 20.3 1.9E+02 0.0042 19.8 3.8 22 3-24 63-84 (161)
88 PRK14164 heat shock protein Gr 20.2 2.8E+02 0.0061 20.6 4.8 24 24-47 94-117 (218)
89 PF02183 HALZ: Homeobox associ 20.1 93 0.002 17.7 1.8 13 36-48 2-14 (45)
No 1
>KOG0577|consensus
Probab=99.94 E-value=5e-27 Score=194.89 Aligned_cols=71 Identities=56% Similarity=0.752 Sum_probs=69.3
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Q psy338 1 MHEQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLNT 71 (72)
Q Consensus 1 ~rEQMsgYKRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~~ 71 (72)
|||||||||||||||||+|++||+||+.|||+|+.+||+|||+++++|++|++||+++|++++||++|++.
T Consensus 485 l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ekl~~khqa~~ekeak~~~ 555 (948)
T KOG0577|consen 485 LREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEKLARKHQAIGEKEAKAAS 555 (948)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PF12474 PKK: Polo kinase kinase ; InterPro: IPR022165 This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00069 from PFAM. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. ; GO: 0004674 protein serine/threonine kinase activity
Probab=94.09 E-value=0.61 Score=32.20 Aligned_cols=54 Identities=33% Similarity=0.386 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy338 15 HQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAK 68 (72)
Q Consensus 15 HqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K 68 (72)
|+-+..++..++-.|+.+...+-|+|+|++.-.....+++|...|..++=...|
T Consensus 2 ~q~~keQ~~~rf~~e~~~l~k~~d~ElE~l~r~qk~~iE~le~~q~~e~r~~~K 55 (142)
T PF12474_consen 2 HQLQKEQLKDRFEQERTQLKKRYDKELEQLERQQKQQIEKLEQRQTQERRRLPK 55 (142)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999999999988765554
No 3
>KOG0579|consensus
Probab=81.67 E-value=13 Score=33.34 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=39.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy338 4 QMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEK 65 (72)
Q Consensus 4 QMsgYKRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK 65 (72)
++....++.+..+.+-++|-++.-.-.++.-.+..-|.-+..-.|.-|++-|...+.+++|+
T Consensus 795 eLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~ 856 (1187)
T KOG0579|consen 795 ELRELRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIED 856 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 47777788777777777777666666666655665555555555556666555555555554
No 4
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=79.80 E-value=5.6 Score=23.44 Aligned_cols=29 Identities=38% Similarity=0.463 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTLKHTSEL 63 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~kh~~el 63 (72)
++.+|-|--+.....+||+-|.++|..+-
T Consensus 14 Lk~~K~y~Kl~KKq~KEl~~lkKKh~Ke~ 42 (47)
T PF06631_consen 14 LKQHKAYVKLLKKQQKELEELKKKHQKER 42 (47)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888999999999999998653
No 5
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=74.59 E-value=42 Score=26.79 Aligned_cols=27 Identities=41% Similarity=0.516 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy338 42 ETLLQQFSRELEKLTLKHTSELEKKAK 68 (72)
Q Consensus 42 e~~~~~~~kElekL~~kh~~eleK~~K 68 (72)
+.+...|..+...|+.+...+|..+++
T Consensus 310 ~~~~~e~~~~~~~l~~~~~~~L~~eL~ 336 (582)
T PF09731_consen 310 EELREEFEREREELEEKYEEELRQELK 336 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444443
No 6
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=74.53 E-value=25 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy338 37 LDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 37 LdkE~e~~~~~~~kElekL~~ 57 (72)
++++++.+...|..++|.+-+
T Consensus 138 ~~~~iq~l~~~~~~~id~~~~ 158 (165)
T PF01765_consen 138 LEKEIQKLTDKYIKKIDELLK 158 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554433
No 7
>PRK14161 heat shock protein GrpE; Provisional
Probab=68.61 E-value=40 Score=24.07 Aligned_cols=46 Identities=7% Similarity=0.097 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 15 HQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 15 HqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
++..+..|+.++. ++.+.-+++..|++|.+..+.+|.+...+.-..
T Consensus 24 ~~~ei~~l~~e~~-elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~ 69 (178)
T PRK14161 24 ANPEITALKAEIE-ELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIA 69 (178)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666655 344444677778888888888877776655443
No 8
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=68.57 E-value=25 Score=21.62 Aligned_cols=40 Identities=33% Similarity=0.384 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~k 58 (72)
+..|-++|-.--.+.-.+|.+||+..+.+--++++.+..+
T Consensus 13 I~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 13 ISILKSKLDEKKSEILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667778889999999999999999988655
No 9
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=66.60 E-value=19 Score=23.91 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDK 39 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdk 39 (72)
+|+.-..+|.+|-.++..|++.|+..||.
T Consensus 66 ~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~ 94 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEKLKEEIEHHRKEIDE 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666678888888888888877776653
No 10
>KOG0579|consensus
Probab=63.32 E-value=58 Score=29.50 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAK 68 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K 68 (72)
+-..|++++.+..-|..+||-..+..-|-|+|++-.+-.++++++...|...+--++|
T Consensus 813 L~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eak 870 (1187)
T KOG0579|consen 813 LQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAK 870 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999999999999999999999999999999999999888766554
No 11
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=60.43 E-value=66 Score=23.68 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 9 KRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 9 KRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
..++.+-..++..++..-..=+++-+..-+++.+........|.+++..+-..+++.+.+.+
T Consensus 56 ~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a 117 (250)
T PRK14474 56 GQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEF 117 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888888888888889999999999999999999999999999999988887654
No 12
>PRK14155 heat shock protein GrpE; Provisional
Probab=60.14 E-value=66 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 17 AALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 17 kqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
..+..|+..+. ++.+.-+++..|++|.+..+.+|.+.+.+.-..
T Consensus 20 ~~l~~le~e~~-elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~ 63 (208)
T PRK14155 20 QEIEALKAEVA-ALKDQALRYAAEAENTKRRAEREMNDARAYAIQ 63 (208)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444 344555677778888888888887776654443
No 13
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=57.23 E-value=63 Score=23.87 Aligned_cols=59 Identities=29% Similarity=0.358 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy338 10 RMRREHQAALLKLEEKCKIEMD--------QHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAK 68 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme--------~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K 68 (72)
++.-.|......|.+|.+.+.+ -++.+..+|.+.+...+..|+...-.+=.-++|+.+.
T Consensus 85 ~L~~~h~~e~~~l~~k~~~~~~~~~~h~l~~lk~~~~~e~~~l~~r~~eEl~~~D~kivleLDqkV~ 151 (196)
T PF07324_consen 85 KLLNEHKIEKQELRQKHKEEQQACKPHNLPLLKTKHEKELEELEKRIKEELRQMDKKIVLELDQKVA 151 (196)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666665544 2344566666666666666666666666666665543
No 14
>PRK14139 heat shock protein GrpE; Provisional
Probab=55.98 E-value=75 Score=22.95 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+..|+.++. |+.+--+++..|++|.+..+.+|.+.+.+.-.
T Consensus 41 l~~le~e~~-elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~ 81 (185)
T PRK14139 41 LAEAEAKAA-ELQDSFLRAKAETENVRRRAQEDVAKAHKFAI 81 (185)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544444 34444466677777777777777766655433
No 15
>PRK14151 heat shock protein GrpE; Provisional
Probab=55.17 E-value=74 Score=22.64 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKH 59 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh 59 (72)
+..|+.++. |..+.-+++..|++|.+..+.+|.+.+.+.-
T Consensus 29 i~~le~e~~-el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a 68 (176)
T PRK14151 29 VQELEEQLA-AAKDQSLRAAADLQNVRRRAEQDVEKAHKFA 68 (176)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333 3333445666677777777777766665443
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.36 E-value=1.4e+02 Score=25.59 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 5 MSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRE 51 (72)
Q Consensus 5 MsgYKRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kE 51 (72)
+.+..+-|++-...|.+||-||..|.+ .+..+++.|.+.+..-..|
T Consensus 476 l~~L~~aRq~DKq~l~~LEkrL~eE~~-~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 476 LQNLVQARQQDKQSLQQLEKRLAEERR-QRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Confidence 445667788888889999999998875 5777788777776554444
No 17
>PRK14147 heat shock protein GrpE; Provisional
Probab=52.26 E-value=82 Score=22.29 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 35 SLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+++..|++|.+..+.+|.+.+...-.
T Consensus 42 lR~~Ad~eN~rkR~~kE~e~~~~~a~ 67 (172)
T PRK14147 42 LRERADLENQRKRIARDVEQARKFAN 67 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766655433
No 18
>PRK14159 heat shock protein GrpE; Provisional
Probab=51.68 E-value=87 Score=22.41 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
+..|+..+. ++.+.-+++..|++|.+..+.+|.+...+.-..
T Consensus 32 i~~l~~e~~-elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~ 73 (176)
T PRK14159 32 QNKLQKDYD-ELKDKYMRANAEFENIKKRMEKEKLSAMAYANE 73 (176)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 344444667777788887777777776654433
No 19
>PRK14145 heat shock protein GrpE; Provisional
Probab=51.29 E-value=94 Score=22.71 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 32 QHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 32 ~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
..-+++..|++|.+..+.+|.+.+.+.-.
T Consensus 66 d~~lR~~AEfeN~rkR~~kE~e~~~~~a~ 94 (196)
T PRK14145 66 DIAQRLKAEFENYRKRTEKEKSEMVEYGK 94 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356666677777777766666655433
No 20
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.21 E-value=79 Score=21.81 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSREL 52 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kEl 52 (72)
.+++.+-..+..-.++++.|+|.++.+|..|...+.....-++
T Consensus 69 ~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~ 111 (177)
T PF07798_consen 69 NSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDL 111 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777555443
No 21
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=50.88 E-value=35 Score=17.70 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy338 40 EYETLLQQFSRELEKLTLKH 59 (72)
Q Consensus 40 E~e~~~~~~~kElekL~~kh 59 (72)
+|+.-+..|..||.++.+.-
T Consensus 2 ~Yqakla~YqaeLa~vqk~n 21 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKAN 21 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999988754
No 22
>PRK14163 heat shock protein GrpE; Provisional
Probab=49.62 E-value=1.1e+02 Score=22.81 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+..|+.++. ++...-+++..|++|++..+.+|.+.+...-.
T Consensus 49 l~~l~~e~~-el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~ 89 (214)
T PRK14163 49 LDQVRTALG-ERTADLQRLQAEYQNYRRRVERDRVTVKEIAV 89 (214)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 34444466777777777777777766655433
No 23
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=47.68 E-value=83 Score=21.00 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
.++.+.+.+|.+....-..=+++-+..-++..++.......|.+++...-.++++.+...+
T Consensus 57 ~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a 117 (159)
T PRK13461 57 ELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKA 117 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777778888888899999999999999998888888776554
No 24
>PRK14158 heat shock protein GrpE; Provisional
Probab=46.43 E-value=1.1e+02 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 33 HKSLLDKEYETLLQQFSRELEKLTLKH 59 (72)
Q Consensus 33 h~~kLdkE~e~~~~~~~kElekL~~kh 59 (72)
.-+++..|++|.+..+.+|.+.+.+.-
T Consensus 62 ~~lR~~AefeN~RkR~~kE~e~~~~~a 88 (194)
T PRK14158 62 KYLRERADLENYRKRVQKEKEELLKYG 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666677777777777766665543
No 25
>PRK14149 heat shock protein GrpE; Provisional
Probab=45.41 E-value=1.2e+02 Score=22.13 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+..|+..+. ++.+.-+++..|++|.+..+.+|.+.+.+.-.
T Consensus 45 ~~~l~~e~~-elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~ 85 (191)
T PRK14149 45 KEDFELKYK-EMHEKYLRVHADFENVKKRLERDKSMALEYAY 85 (191)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433 23333456667777777777777766655433
No 26
>PRK14157 heat shock protein GrpE; Provisional
Probab=44.32 E-value=1.4e+02 Score=22.52 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
+++..|++|.+..+.+|.+.+.+.-..
T Consensus 101 lR~~AEfeNyRKR~~rE~e~~~~~a~~ 127 (227)
T PRK14157 101 QRERAEFINYRNRTQKEQDRFRQHGII 127 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888887777665443
No 27
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.99 E-value=1.7e+02 Score=23.30 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 8 YKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 8 YKRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
......++.+.|.+.......=+++-+..-+++.++.......|.+++...-..+++.+...+
T Consensus 51 a~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a 113 (445)
T PRK13428 51 LAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQL 113 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888889999999999999999999999988888888876554
No 28
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=42.30 E-value=1e+02 Score=20.62 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
.+..+....|.........=+++-+..-+++.+........|.+++...-.++++.+...+
T Consensus 60 ~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a 120 (164)
T PRK14473 60 NAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRM 120 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777788888888888888888999999999999998888888888776554
No 29
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.20 E-value=1.4e+02 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 18 ALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 18 qL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
.+..|+.++. +..+--+++..|++|.+....+|.+.+...-.
T Consensus 60 el~~le~e~~-elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~ 101 (208)
T PRK14154 60 QLTRMERKVD-EYKTQYLRAQAEMDNLRKRIEREKADIIKFGS 101 (208)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 33333356667777777777777666554433
No 30
>PRK14146 heat shock protein GrpE; Provisional
Probab=40.73 E-value=1.5e+02 Score=21.87 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
+++..|++|.+..+.+|.+.+..--..
T Consensus 78 lR~~AdfeN~rkR~~kE~e~~~~~a~e 104 (215)
T PRK14146 78 ARERAEFQNFKRRSAQEFVSIRKEAVK 104 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776654433
No 31
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.76 E-value=1.3e+02 Score=20.82 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy338 28 IEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSEL 63 (72)
Q Consensus 28 ~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~el 63 (72)
+++..-.-+|+.|++.+.+.+..|+.++...-..++
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~ 111 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDL 111 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456778888888888888888777554443
No 32
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=39.58 E-value=95 Score=19.39 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
.+..+-.+.+...+.....-+++-+...+++.+........+++++...-.++++.....+
T Consensus 51 ~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a 111 (132)
T PF00430_consen 51 QLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777888888888889999999999999999999888888888776543
No 33
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=39.32 E-value=2.2e+02 Score=23.56 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy338 9 KRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 64 (72)
Q Consensus 9 KRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ele 64 (72)
+||--.+.|++..+|+++..|.+---..|-++.. .-..++++-.-.+|.++++
T Consensus 194 ~rl~~~~kkq~l~le~~l~eEy~rkm~aL~~~c~---lE~r~k~e~~~qre~a~~~ 246 (429)
T PF12297_consen 194 KRLSSVFKKQFLGLEKRLQEEYDRKMVALTAECN---LETRKKMEAQHQREMAEME 246 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999887766666665532 2334455555666666443
No 34
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.16 E-value=1.6e+02 Score=21.98 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~ 57 (72)
+++..|++|++....+|.+.+.+
T Consensus 91 lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 91 MRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555544
No 35
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=39.12 E-value=2.3e+02 Score=23.72 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy338 29 EMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSE 62 (72)
Q Consensus 29 Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~e 62 (72)
++..+-.+.--+.+.+.++|..|++.|...+.++
T Consensus 157 dIN~laaqH~Ee~q~ie~kw~seL~~L~~~QK~E 190 (510)
T PF10154_consen 157 DINHLAAQHFEEQQRIESKWSSELKALKETQKQE 190 (510)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555566666666666555554
No 36
>PRK14148 heat shock protein GrpE; Provisional
Probab=39.10 E-value=1.5e+02 Score=21.56 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 33 HKSLLDKEYETLLQQFSRELEKLTLKH 59 (72)
Q Consensus 33 h~~kLdkE~e~~~~~~~kElekL~~kh 59 (72)
.-+++..|++|.+..+.+|.+.+.+.-
T Consensus 62 ~~lR~~Ae~eN~rKR~~rE~e~~~~~a 88 (195)
T PRK14148 62 EALRAKAEMENIRKRAERDVSNARKFG 88 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566667777777777666665543
No 37
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=39.09 E-value=1.4e+02 Score=21.30 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~ 57 (72)
+..|++.+.. ..+.-+++..|+++++....+|.+...+
T Consensus 45 i~~Le~q~~e-~~~~~lr~~Ae~eN~rkR~~re~e~~~k 82 (193)
T COG0576 45 IAELEAQLEE-LKDKYLRAQAEFENLRKRTEREREEAKK 82 (193)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 4444556666666666666666666554
No 38
>PRK14141 heat shock protein GrpE; Provisional
Probab=38.93 E-value=1.6e+02 Score=21.73 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~k 58 (72)
+..|+..+. ++...-+++..|+++++....+|.+.+.+.
T Consensus 40 i~~le~e~~-elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~ 78 (209)
T PRK14141 40 LEALKAENA-ELKDRMLRLAAEMENLRKRTQRDVADARAY 78 (209)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333 333333555666666666666666655544
No 39
>PRK14144 heat shock protein GrpE; Provisional
Probab=38.76 E-value=1.6e+02 Score=21.65 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
+..|+..+. |+.+--+++..|++|.+..+.+|.+.+...-..
T Consensus 54 i~~le~e~~-elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~ 95 (199)
T PRK14144 54 LTLAEQKAH-ENWEKSVRALAELENVRRRMEREVANAHKYGVE 95 (199)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 444444677888888888888888777655443
No 40
>KOG0577|consensus
Probab=38.74 E-value=99 Score=27.70 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEK 65 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK 65 (72)
..--||-+++..||++...-.-=+-.+.+.|+.++-+--+--+-.|..+|..+++.
T Consensus 847 ~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~er~~~e~e~ 902 (948)
T KOG0577|consen 847 QAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLLERHAREIEA 902 (948)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhhhhHHHHhh
Confidence 34468889999999998887777778888888877766666677788888888775
No 41
>PRK14162 heat shock protein GrpE; Provisional
Probab=38.46 E-value=1.5e+02 Score=21.49 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 32 QHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 32 ~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+.-+++..|++|.+..+.+|.+.+.+.-.
T Consensus 60 d~~lR~~AEfeN~rkR~~kE~e~~~~~a~ 88 (194)
T PRK14162 60 DKYLRSQAEIQNMQNRYAKERAQLIKYES 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777776665443
No 42
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=38.06 E-value=1.3e+02 Score=20.48 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
.+..+-+.+|......-..=+++-+..-+++.+........|.+++...-..+++.+...+
T Consensus 71 ~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a 131 (174)
T PRK07352 71 QALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERV 131 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777778888888888899999999999999998888888876543
No 43
>PRK14156 heat shock protein GrpE; Provisional
Probab=37.36 E-value=1.5e+02 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~ 57 (72)
+++..|++|.+..+.+|.+.+.+
T Consensus 51 lR~~AEfeN~rKR~~rE~e~~~~ 73 (177)
T PRK14156 51 LRAHAEMQNIQRRANEERQQLQR 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 44
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=36.87 E-value=1.7e+02 Score=21.59 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 13 REHQAALLKLEEKCKIEMDQHKSLLDKEYETL 44 (72)
Q Consensus 13 rqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~ 44 (72)
-.|.+++..|+.+|+.|+.....++--|+++.
T Consensus 118 ~~~~~e~~~l~~r~~eEl~~~D~kivleLDqk 149 (196)
T PF07324_consen 118 TKHEKELEELEKRIKEELRQMDKKIVLELDQK 149 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444444433
No 45
>PRK14160 heat shock protein GrpE; Provisional
Probab=36.83 E-value=1.7e+02 Score=21.58 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+..|+..+. ++...-+++..|+++.+..+.+|.+.+...-.
T Consensus 70 l~~l~~e~~-elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~ 110 (211)
T PRK14160 70 NKKLENELE-ALKDRLLRTVAEYDNYRKRTAKEKEGIYSDAC 110 (211)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 33444466777888888888888877765443
No 46
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=36.35 E-value=1.2e+02 Score=19.57 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
+..+-..+|.........=+++-+...+++.+........|.+++...-.++++.+...+
T Consensus 58 ~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a 117 (140)
T PRK07353 58 LEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAA 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666677778888888889999999999999999998888888876654
No 47
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=35.71 E-value=1.4e+02 Score=20.33 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLL----------QQFSRELEKLTLKHTSELEKKAKL 69 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~----------~~~~kElekL~~kh~~eleK~~K~ 69 (72)
.|.+=-|.+..+-+.++.-+-..+....+.+.... ....++++++..++.+++|.-.+.
T Consensus 91 ~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~ 159 (165)
T PF01765_consen 91 RRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKK 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666788888888888888888888888877765 667889999999999999987664
No 48
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.49 E-value=1.2e+02 Score=23.93 Aligned_cols=61 Identities=25% Similarity=0.445 Sum_probs=34.2
Q ss_pred hhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy338 7 GYKRMRREHQ------AALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAK 68 (72)
Q Consensus 7 gYKRmRrqHq------kqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K 68 (72)
+|+.+---|. .++.++.+.|.+.++-++.+| +++..-..+..+....-......+++..++
T Consensus 12 efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrL-k~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik 78 (330)
T PF07851_consen 12 EFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRL-KELKKSLKRCKKSLSAEERELIEKLEEDIK 78 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 4455544443 356677789999999999988 444444444432222223344444444443
No 49
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.36 E-value=1.4e+02 Score=20.25 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
+..+..++|.........-+++-+..-+++.+........|.+++...-..+++.+...+
T Consensus 71 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a 130 (175)
T PRK14472 71 ILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRA 130 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777788888888888888888888888888888888888776544
No 50
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=35.24 E-value=1.5e+02 Score=20.39 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
+..+-+++|......-..-+++-+..-+++.+........|.+++...-..+++.+...+
T Consensus 77 ~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a 136 (184)
T CHL00019 77 KLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRA 136 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667777778888888888899999999998888888888776554
No 51
>PF12474 PKK: Polo kinase kinase ; InterPro: IPR022165 This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00069 from PFAM. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. ; GO: 0004674 protein serine/threonine kinase activity
Probab=35.01 E-value=1.5e+02 Score=20.36 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy338 17 AALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAK 68 (72)
Q Consensus 17 kqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K 68 (72)
-+..++--+.-.|+|.+...-...+|.+......|+-.+.++-.+|-+++..
T Consensus 15 ~e~~~l~k~~d~ElE~l~r~qk~~iE~le~~q~~e~r~~~KriR~Eq~~~l~ 66 (142)
T PF12474_consen 15 QERTQLKKRYDKELEQLERQQKQQIEKLEQRQTQERRRLPKRIRAEQKKRLA 66 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666555555666666666666666666666666665544
No 52
>PRK14164 heat shock protein GrpE; Provisional
Probab=34.90 E-value=1.9e+02 Score=21.48 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~k 58 (72)
+++..|++|.+..+.+|.+.+...
T Consensus 94 lR~~AE~eN~RkR~~rE~e~~~~~ 117 (218)
T PRK14164 94 QRVTAEYANYRRRTERERQAIIET 117 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655443
No 53
>KOG3612|consensus
Probab=34.69 E-value=2.9e+02 Score=23.83 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhHHHHH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYET-------------------LLQQFSRELEKLTLKHTSELEK 65 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~-------------------~~~~~~kElekL~~kh~~eleK 65 (72)
++++=.+|..|++..+.+-+.++.- ++.++.-|..+|...|+..|+-
T Consensus 458 l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n~~e~~kkl~~~~qr~l~e 523 (588)
T KOG3612|consen 458 LVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAENIKEEIKKLAEEHQRALAE 523 (588)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555433 4455556666666666666653
No 54
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=34.01 E-value=2.4e+02 Score=22.45 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~k 58 (72)
.+...|...+...+.-+...|++++.+.+.+....-..+.+=+++|+.-
T Consensus 355 ~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~ 403 (473)
T PF14643_consen 355 QLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQA 403 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 4667888999999999999999999999988888888888888888753
No 55
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=33.41 E-value=2.5e+02 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 28 IEMDQHKSLLDKEYETLLQQFSRELE 53 (72)
Q Consensus 28 ~Eme~h~~kLdkE~e~~~~~~~kEle 53 (72)
...+..+..++++...+...|..+|.
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666655554
No 56
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=33.17 E-value=1.6e+02 Score=20.07 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 13 REHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 13 rqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
.+-++.|.........=+++-+..-+++.+........|.+++...-..+++.+...+
T Consensus 71 ~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a 128 (173)
T PRK13460 71 KDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKA 128 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666677777788888888888888999998888888888776554
No 57
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=32.59 E-value=2.4e+02 Score=22.34 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 26 CKIEMDQHKSLLDKEYETLLQQFSRELEKLT 56 (72)
Q Consensus 26 ~k~Eme~h~~kLdkE~e~~~~~~~kElekL~ 56 (72)
+..|--+|-..|..|.|.+.|...+-+++|.
T Consensus 161 Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~ 191 (310)
T PF09755_consen 161 LRREKVDLENTLEQEQEALVNRLWKQMDKLE 191 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 58
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=32.17 E-value=2e+02 Score=20.89 Aligned_cols=36 Identities=6% Similarity=0.176 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 20 LKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKL 55 (72)
Q Consensus 20 ~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL 55 (72)
.....+....|+..+.+++.||+.....|..+..++
T Consensus 75 pd~v~~rqEa~eaAR~RmQEE~dakA~~~kEKq~q~ 110 (190)
T PF06936_consen 75 PDVVVRRQEAMEAARRRMQEELDAKAEEYKEKQKQE 110 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999999988776544443
No 59
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=32.06 E-value=1.6e+02 Score=19.73 Aligned_cols=60 Identities=8% Similarity=0.147 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
+..+..+.|.........-+++-+..-++.++........|.+++...-.++++.+...+
T Consensus 61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a 120 (164)
T PRK14471 61 LQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAA 120 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666677777777888888888888888888888888887776543
No 60
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=32.06 E-value=1.7e+02 Score=20.04 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
+..+-..+|.........-+++-+..-.++.+........|.+++...-..+++.+...+
T Consensus 71 ~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a 130 (173)
T PRK13453 71 LEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERA 130 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777778888888888888888888888888888888888776554
No 61
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=31.74 E-value=2e+02 Score=20.76 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
.++.+-+.+|.........=+++-+..-+++.+........|.+++...-.++++.+...+
T Consensus 57 ~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a 117 (246)
T TIGR03321 57 QERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777788888888888889999999999999988888888876654
No 62
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.66 E-value=2.5e+02 Score=22.20 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy338 17 AALLKLEEKCKIEMDQHKSLLDKEYETLLQ---QFSRELEKLTL 57 (72)
Q Consensus 17 kqL~~Le~k~k~Eme~h~~kLdkE~e~~~~---~~~kElekL~~ 57 (72)
.+-..||+.+..|=+-+-.+|.+.+..+.. ++..+|++|+.
T Consensus 120 ~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 120 QEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344688888888887777777777777764 77888888875
No 63
>PRK14153 heat shock protein GrpE; Provisional
Probab=30.99 E-value=2.1e+02 Score=20.83 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~k 58 (72)
+++..|++|.+..+.+|.+.+.+.
T Consensus 57 lR~~AEfeN~rKR~~kE~e~~~~~ 80 (194)
T PRK14153 57 FRLAAEFDNFRKRTAREMEENRKF 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555443
No 64
>PRK14150 heat shock protein GrpE; Provisional
Probab=30.90 E-value=2e+02 Score=20.61 Aligned_cols=30 Identities=13% Similarity=0.044 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 30 MDQHKSLLDKEYETLLQQFSRELEKLTLKH 59 (72)
Q Consensus 30 me~h~~kLdkE~e~~~~~~~kElekL~~kh 59 (72)
+...-+++..|++|.+..+.+|.+.+..--
T Consensus 57 ~kd~~lR~~AefeN~rkR~~kE~~~~~~~a 86 (193)
T PRK14150 57 ERDSVLRARAEVENIRRRAEQDVEKAHKFA 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777777777777766655443
No 65
>PRK14158 heat shock protein GrpE; Provisional
Probab=28.26 E-value=2.4e+02 Score=20.53 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy338 25 KCKIEMDQHKSLLDKEYETLLQQ 47 (72)
Q Consensus 25 k~k~Eme~h~~kLdkE~e~~~~~ 47 (72)
|+.+|+++.+.+..+|.+.....
T Consensus 65 R~~AefeN~RkR~~kE~e~~~~~ 87 (194)
T PRK14158 65 RERADLENYRKRVQKEKEELLKY 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888887776554
No 66
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=27.78 E-value=65 Score=18.69 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy338 41 YETLLQQFSRELEKLTLK 58 (72)
Q Consensus 41 ~e~~~~~~~kElekL~~k 58 (72)
++.+...|.-||++|++.
T Consensus 7 l~~~t~efgdDLd~lR~~ 24 (47)
T PF14615_consen 7 LQRLTDEFGDDLDELRKA 24 (47)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 467788999999999864
No 67
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=27.61 E-value=1.9e+02 Score=19.34 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
+..+....|.........-+++-+..-+++.+........|.+++...-.++++.+...+
T Consensus 75 ~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a 134 (156)
T CHL00118 75 LTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKA 134 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666667777777778888888888888888888888888877766543
No 68
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.51 E-value=3e+02 Score=21.66 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 13 REHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 13 rqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~k 58 (72)
|.|--|+.++...+..-+.+-+..|++ +-+..++-|||+.++
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~k----l~~~i~~~lekI~sR 260 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDK----LQQDISKTLEKIESR 260 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 567778888888888877777777766 455555666666544
No 69
>PF04772 Flu_B_M2: Influenza B matrix protein 2 (BM2); InterPro: IPR006859 BM2 is synthesised in the late phase of infection and incorporated into the virion. It may be phosphorylated in vivo. The function of BM2 is unknown [].; PDB: 2LJB_D 2LJC_A 2KIX_B 2KJ1_C.
Probab=27.50 E-value=1e+02 Score=20.86 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy338 33 HKSLLDKEYETLLQQFSRELEK 54 (72)
Q Consensus 33 h~~kLdkE~e~~~~~~~kElek 54 (72)
-+..+++|+--++++|++|.+-
T Consensus 45 nke~~nrevsilrh~yqkeiqa 66 (109)
T PF04772_consen 45 NKETINREVSILRHNYQKEIQA 66 (109)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhhHHHHHHHHHHHHHHHH
Confidence 3567899999999999999863
No 70
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=27.39 E-value=2.3e+02 Score=20.20 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 21 KLEEKCKIEMDQHKSLLDKEYETLL 45 (72)
Q Consensus 21 ~Le~k~k~Eme~h~~kLdkE~e~~~ 45 (72)
.-.-|..+|++..+.++.+|.+...
T Consensus 57 ~~~lr~~Ae~eN~rkR~~re~e~~~ 81 (193)
T COG0576 57 DKYLRAQAEFENLRKRTEREREEAK 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667788888888888877765
No 71
>KOG1265|consensus
Probab=27.12 E-value=1e+02 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy338 36 LLDKEYETLLQQFSRELEKLTLKHTSELE 64 (72)
Q Consensus 36 kLdkE~e~~~~~~~kElekL~~kh~~ele 64 (72)
+.+||++.|+....++-+.|.+.|...++
T Consensus 950 r~eKeL~~LrKkh~k~~~~l~k~~~~~~~ 978 (1189)
T KOG1265|consen 950 RHEKELRDLRKKHQKERDTLQKQHQTQVD 978 (1189)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhcchh
Confidence 33444444444444444444444444433
No 72
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=25.74 E-value=2.3e+02 Score=19.45 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLN 70 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~~ 70 (72)
+..+=+..|.+.......-+++-+..-+++.+........|.+++..+=..+++.+...+
T Consensus 75 ~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a 134 (167)
T PRK08475 75 KKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKM 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777778888888888888999999999999998888888888776554
No 73
>KOG4807|consensus
Probab=25.70 E-value=3.3e+02 Score=23.20 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+.||||.+|..|-+----=.-+--..----+|.+.|.|.-|+++=-.|.+
T Consensus 357 LQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsq 406 (593)
T KOG4807|consen 357 LQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQ 406 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
No 74
>PRK14142 heat shock protein GrpE; Provisional
Probab=25.33 E-value=1.6e+02 Score=22.12 Aligned_cols=21 Identities=0% Similarity=0.080 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy338 25 KCKIEMDQHKSLLDKEYETLL 45 (72)
Q Consensus 25 k~k~Eme~h~~kLdkE~e~~~ 45 (72)
|+.+|.++.+.+..+|.+...
T Consensus 58 R~~AEfEN~RKR~erE~e~~~ 78 (223)
T PRK14142 58 RVQADFANYRKRALRDQQAAA 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444443
No 75
>PRK14142 heat shock protein GrpE; Provisional
Probab=24.91 E-value=3e+02 Score=20.66 Aligned_cols=32 Identities=3% Similarity=0.114 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy338 32 QHKSLLDKEYETLLQQFSRELEKLTLKHTSEL 63 (72)
Q Consensus 32 ~h~~kLdkE~e~~~~~~~kElekL~~kh~~el 63 (72)
..-+++..|++|.+....+|.+.+.+.-...+
T Consensus 54 dk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~ 85 (223)
T PRK14142 54 ADLQRVQADFANYRKRALRDQQAAADRAKASV 85 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33488999999999999999999876655443
No 76
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.32 E-value=2.5e+02 Score=19.48 Aligned_cols=58 Identities=7% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy338 12 RREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKL 69 (72)
Q Consensus 12 RrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~K~ 69 (72)
..+....|......-..-+++-+...+++.+..+.....|.++......+.++.....
T Consensus 85 ~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~ 142 (181)
T PRK13454 85 EKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAG 142 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666777777777777777777777766666665443
No 77
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=24.14 E-value=2.6e+02 Score=19.62 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 7 GYKRMRREHQAALLKLEEKCKIEMDQHKS 35 (72)
Q Consensus 7 gYKRmRrqHqkqL~~Le~k~k~Eme~h~~ 35 (72)
.|.-++.+|++.|+.++..+.+.+..+..
T Consensus 48 ~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 48 DLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46778899999999888777777666653
No 78
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.06 E-value=3.3e+02 Score=20.83 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 12 RREHQAALLKLEEKCKIEMDQHKSLLDKEYETL 44 (72)
Q Consensus 12 RrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~ 44 (72)
+-+||-+|..|+.-++.++..+..+.+..-+.+
T Consensus 133 k~~qqdEldel~e~~~~el~~l~~~~q~k~~~i 165 (258)
T PF15397_consen 133 KDSQQDELDELNEMRQMELASLSRKIQEKKEEI 165 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 79
>KOG2264|consensus
Probab=24.05 E-value=4.4e+02 Score=23.62 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 6 SGYKRMRREHQAALLKLEEK---CKIEMDQHKSLLDKEYETLLQQFSRELEKLT 56 (72)
Q Consensus 6 sgYKRmRrqHqkqL~~Le~k---~k~Eme~h~~kLdkE~e~~~~~~~kElekL~ 56 (72)
...+|++..=--+|.+||.| +.+|+++...+.+ |+..+.-+-+-||..|.
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiE-elk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIE-ELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHhHHHHHHHH
Confidence 34577777777888888877 7777777776643 44555555566666664
No 80
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.41 E-value=2.7e+02 Score=19.62 Aligned_cols=22 Identities=5% Similarity=0.317 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy338 25 KCKIEMDQHKSLLDKEYETLLQ 46 (72)
Q Consensus 25 k~k~Eme~h~~kLdkE~e~~~~ 46 (72)
|+.+|+++.+.+..+|.+....
T Consensus 43 R~~Ad~eN~rkR~~kE~e~~~~ 64 (172)
T PRK14147 43 RERADLENQRKRIARDVEQARK 64 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777666544
No 81
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=22.36 E-value=2.4e+02 Score=18.51 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy338 24 EKCKIEMDQHKSLLDKEYETLLQ 46 (72)
Q Consensus 24 ~k~k~Eme~h~~kLdkE~e~~~~ 46 (72)
.++.+|+++.+.+..+|.+....
T Consensus 9 ~r~~ae~~N~rkr~~~e~~~~~~ 31 (137)
T cd00446 9 LRALAEFENYRKRTEREREEARK 31 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555443
No 82
>KOG1265|consensus
Probab=22.30 E-value=2.2e+02 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 6 SGYKRMRREHQAALLKLEEKCKIEMDQH 33 (72)
Q Consensus 6 sgYKRmRrqHqkqL~~Le~k~k~Eme~h 33 (72)
-+|..++..|+|.|..|..|..-+-+.+
T Consensus 942 ks~~Kl~kr~eKeL~~LrKkh~k~~~~l 969 (1189)
T KOG1265|consen 942 KSFVKLLKRHEKELRDLRKKHQKERDTL 969 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444455554444444444444433
No 83
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.15 E-value=3.4e+02 Score=20.28 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy338 24 EKCKIEMDQHKSLLDKEYETLLQ 46 (72)
Q Consensus 24 ~k~k~Eme~h~~kLdkE~e~~~~ 46 (72)
-|+.+++++.|.+..+|.+..+.
T Consensus 91 lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 91 MRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888887777776654
No 84
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.87 E-value=2.6e+02 Score=18.71 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 14 EHQAALLKLEEKCKIEMDQHKSLLDKEYETLL 45 (72)
Q Consensus 14 qHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~ 45 (72)
..+.++..+++.+..+++..+..++.+.+.+.
T Consensus 14 ~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~ 45 (149)
T PF07352_consen 14 ELQREIARIEAEANDEIARIKEWYEAEIAPLQ 45 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665555555555555544443
No 85
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=20.99 E-value=1.7e+02 Score=16.18 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q psy338 23 EEKCKIEMDQHKS 35 (72)
Q Consensus 23 e~k~k~Eme~h~~ 35 (72)
|-|+.+|-|.++.
T Consensus 3 EqkL~sekeqLrr 15 (32)
T PF02344_consen 3 EQKLISEKEQLRR 15 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4566666666654
No 86
>KOG3312|consensus
Probab=20.56 E-value=1.7e+02 Score=21.56 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy338 6 SGYKRMRREHQAALLKLEEK 25 (72)
Q Consensus 6 sgYKRmRrqHqkqL~~Le~k 25 (72)
+.|||+...--|+-..||.+
T Consensus 34 ~~Yk~LKa~vdK~sKKLE~~ 53 (186)
T KOG3312|consen 34 DKYKRLKAEVDKQSKKLEKK 53 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35666655555555555544
No 87
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.30 E-value=1.9e+02 Score=19.80 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=14.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q psy338 3 EQMSGYKRMRREHQAALLKLEE 24 (72)
Q Consensus 3 EQMsgYKRmRrqHqkqL~~Le~ 24 (72)
++...|-++||+|.|-..+|+.
T Consensus 63 DeFAkwaKl~Rk~~kl~~el~~ 84 (161)
T PF04420_consen 63 DEFAKWAKLNRKLDKLEEELEK 84 (161)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888766555543
No 88
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.19 E-value=2.8e+02 Score=20.58 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 24 EKCKIEMDQHKSLLDKEYETLLQQ 47 (72)
Q Consensus 24 ~k~k~Eme~h~~kLdkE~e~~~~~ 47 (72)
-|+.+|+++.+.+..||.+.....
T Consensus 94 lR~~AE~eN~RkR~~rE~e~~~~~ 117 (218)
T PRK14164 94 QRVTAEYANYRRRTERERQAIIET 117 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999998886654
No 89
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.10 E-value=93 Score=17.68 Aligned_cols=13 Identities=23% Similarity=0.733 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q psy338 36 LLDKEYETLLQQF 48 (72)
Q Consensus 36 kLdkE~e~~~~~~ 48 (72)
+|.++|+.|+.+|
T Consensus 2 QlE~Dy~~LK~~y 14 (45)
T PF02183_consen 2 QLERDYDALKASY 14 (45)
T ss_pred chHHHHHHHHHHH
Confidence 4566666666665
Done!