Query psy338
Match_columns 72
No_of_seqs 49 out of 51
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 23:33:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nfn_A Apolipoprotein E3; lipi 76.7 5 0.00017 27.4 5.0 56 9-64 98-153 (191)
2 1jad_A PLC-beta, phospholipase 74.4 10 0.00035 27.8 6.4 30 11-40 117-146 (251)
3 3sjb_C Golgi to ER traffic pro 59.9 19 0.00063 23.0 4.7 43 3-57 46-88 (93)
4 1gs9_A Apolipoprotein E, APOE4 59.9 11 0.00038 25.3 3.9 40 3-42 80-120 (165)
5 2v66_B Nuclear distribution pr 57.0 37 0.0013 22.0 7.3 45 16-60 5-52 (111)
6 3r2p_A Apolipoprotein A-I; amp 53.4 46 0.0016 22.0 7.3 36 11-46 83-118 (185)
7 3sja_C Golgi to ER traffic pro 46.6 28 0.00096 20.8 3.7 23 3-25 29-51 (65)
8 4ani_A Protein GRPE; chaperone 46.1 75 0.0026 22.4 7.3 28 34-61 82-109 (213)
9 3lay_A Zinc resistance-associa 45.3 70 0.0024 21.8 9.3 33 3-35 71-103 (175)
10 3s84_A Apolipoprotein A-IV; fo 41.9 93 0.0032 22.2 8.7 36 11-46 16-51 (273)
11 3dd7_B PHD, prevent HOST death 40.4 21 0.0007 17.6 2.0 22 36-57 1-22 (23)
12 2lem_A Apolipoprotein A-I; lip 38.9 76 0.0026 21.5 5.5 29 19-47 67-95 (216)
13 1ge9_A Ribosome recycling fact 37.6 75 0.0026 21.9 5.3 45 10-58 132-176 (184)
14 4gfq_A Ribosome-recycling fact 36.8 1.1E+02 0.0038 21.6 7.0 47 10-57 154-200 (209)
15 1dkg_A Nucleotide exchange fac 36.6 1E+02 0.0035 21.1 6.8 23 35-57 63-85 (197)
16 2xze_A STAM-binding protein; h 35.9 90 0.0031 20.3 5.3 38 15-52 88-125 (146)
17 3r2p_A Apolipoprotein A-I; amp 34.4 98 0.0034 20.3 8.4 38 20-57 70-107 (185)
18 3aei_A Prefoldin beta subunit 33.4 80 0.0027 20.1 4.5 29 41-69 66-94 (99)
19 2l7b_A Apolipoprotein E, APO-E 31.6 1E+02 0.0035 22.5 5.5 29 11-39 108-136 (307)
20 3mov_A Lamin-B1; LMNB1, B-type 29.1 1E+02 0.0035 18.9 6.8 56 5-61 14-69 (95)
21 2l7b_A Apolipoprotein E, APO-E 28.5 1.7E+02 0.0059 21.3 6.3 50 7-56 67-131 (307)
22 3s84_A Apolipoprotein A-IV; fo 28.2 1.6E+02 0.0056 20.9 8.9 39 11-49 60-98 (273)
23 1gmj_A ATPase inhibitor; coile 27.7 1.1E+02 0.0039 19.0 7.9 29 11-39 34-62 (84)
24 1gs9_A Apolipoprotein E, APOE4 26.1 1.4E+02 0.0047 19.8 5.0 57 8-64 97-153 (165)
25 3b2e_E Golgi to ER traffic pro 31.7 14 0.00049 23.0 0.0 23 3-25 43-65 (84)
26 3vlc_E Golgi to ER traffic pro 25.2 40 0.0014 21.5 2.0 22 3-24 53-74 (94)
27 3kyp_A Pfnaps, nucleosome asse 24.4 1.1E+02 0.0037 20.7 4.3 22 37-58 8-29 (193)
28 1dkg_A Nucleotide exchange fac 23.9 81 0.0028 21.6 3.6 22 24-45 63-84 (197)
29 4gkw_A Spindle assembly abnorm 22.5 2E+02 0.0067 19.9 7.0 51 14-68 57-108 (167)
30 3iv1_A Tumor susceptibility ge 21.0 1.5E+02 0.0052 18.1 4.8 24 21-44 7-30 (78)
31 3ol1_A Vimentin; structural ge 20.2 1.7E+02 0.0058 18.3 5.1 26 40-65 87-112 (119)
No 1
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=76.69 E-value=5 Score=27.43 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy338 9 KRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 64 (72)
Q Consensus 9 KRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ele 64 (72)
..+|.+.++.+..|-.++.-=+++++.++..-+|.++....-=.+.|+.+....+|
T Consensus 98 e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~e 153 (191)
T 1nfn_A 98 QAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45677777777777777777777777777766666655555555555555555554
No 2
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=74.39 E-value=10 Score=27.83 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKE 40 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE 40 (72)
|+--|-.|+.+|..+|..|.-+++.++++.
T Consensus 117 ~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kk 146 (251)
T 1jad_A 117 AREKQIAELKALKESSESNIKDIKKKLEAK 146 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788889999999998888888865
No 3
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=59.92 E-value=19 Score=23.01 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=26.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 3 EQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 3 EQMsgYKRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~ 57 (72)
+++..|-++||+|-|-+.+||. +.+.+...+.+|..=+-+|.-
T Consensus 46 DeFAKWaKL~Rk~DKl~~ele~------------l~~~l~~~k~~F~~~~~~~~~ 88 (93)
T 3sjb_C 46 DNYAKWTKNNRKLDSLDKEINN------------LKDEIQSENKAFQAHLHKLEH 88 (93)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999888877764 345566666666665555543
No 4
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=59.86 E-value=11 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=23.8
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 3 EQMSGY-KRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYE 42 (72)
Q Consensus 3 EQMsgY-KRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e 42 (72)
++|+.| --++-+--+.+..|-+++..++++.+.+|.-=++
T Consensus 80 ~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~ 120 (165)
T 1gs9_A 80 EQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRG 120 (165)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 2345555666667777777777777766664443
No 5
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.97 E-value=37 Score=22.00 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q psy338 16 QAALLKLEEKCKIEMDQHKSLLDKEY---ETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 16 qkqL~~Le~k~k~Eme~h~~kLdkE~---e~~~~~~~kElekL~~kh~ 60 (72)
.+.|..--+++..|.|+.+.+++.-. .+..+...+|+..|+..+.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~ 52 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999887543 4567778888888877654
No 6
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=53.43 E-value=46 Score=22.00 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQ 46 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~ 46 (72)
+|..-++.+..+-.++.-=+++++.++...++.++.
T Consensus 83 Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~ 118 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQ 118 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444444444444444444444443
No 7
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=46.60 E-value=28 Score=20.82 Aligned_cols=23 Identities=4% Similarity=0.156 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q psy338 3 EQMSGYKRMRREHQAALLKLEEK 25 (72)
Q Consensus 3 EQMsgYKRmRrqHqkqL~~Le~k 25 (72)
+++..|-++||+|-|-+..||..
T Consensus 29 DeFAKWaKL~Rk~DKl~~ele~l 51 (65)
T 3sja_C 29 DNYAKWTKNNRKLDSLDKEINNL 51 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999998777666543
No 8
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=46.11 E-value=75 Score=22.38 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 34 KSLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 34 ~~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
-+++..|++|.+....+|.+.+.+--..
T Consensus 82 ~lR~~AEfeN~RkR~~rE~e~~~~~a~e 109 (213)
T 4ani_A 82 YLRLYADFENFRRRTRQEMEAAEKYRAQ 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777776654443
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.30 E-value=70 Score=21.77 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 3 EQMSGYKRMRREHQAALLKLEEKCKIEMDQHKS 35 (72)
Q Consensus 3 EQMsgYKRmRrqHqkqL~~Le~k~k~Eme~h~~ 35 (72)
||-..++.||.+++.+...|-..+.+...++..
T Consensus 71 EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~a 103 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSALRQQLISKRYEYNA 103 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999988886666655555543
No 10
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=41.89 E-value=93 Score=22.20 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQ 46 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~ 46 (72)
+|.+-.+.+..|-.++.=..++.+.++.++++.++.
T Consensus 16 lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~ 51 (273)
T 3s84_A 16 LKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQ 51 (273)
T ss_dssp HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555444
No 11
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=40.36 E-value=21 Score=17.62 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy338 36 LLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 36 kLdkE~e~~~~~~~kElekL~~ 57 (72)
+||.|...+-+.+..++..|..
T Consensus 1 klDaEFaaIm~~hg~t~~~L~d 22 (23)
T 3dd7_B 1 ALDAEFASLFDTLDSTNKEMVN 22 (26)
T ss_pred CchhHHHHHHHHHhHHHHHHhc
Confidence 4778888888888887777654
No 12
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=38.91 E-value=76 Score=21.53 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 19 LLKLEEKCKIEMDQHKSLLDKEYETLLQQ 47 (72)
Q Consensus 19 L~~Le~k~k~Eme~h~~kLdkE~e~~~~~ 47 (72)
...+-.++..+.+.++.+|.++++.++..
T Consensus 67 ~~e~~~~l~~~~~~lr~~l~kd~ee~r~~ 95 (216)
T 2lem_A 67 TRDFWDNLEKETDWVRQEMNKDLEEVKQK 95 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhccHHHHHHh
Confidence 34455556666666666666666666554
No 13
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=37.55 E-value=75 Score=21.86 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~k 58 (72)
..||.....+..++ + -+|=|. .+..++++.+...|-+++|.+-+.
T Consensus 132 niRrda~~~lKk~~-k-iseD~~--k~~e~~iQkltd~~i~~id~~~~~ 176 (184)
T 1ge9_A 132 NVRREAKEMIEELE-G-ISEDEK--KRALERLQKLTDKYIDEINKLMEA 176 (184)
T ss_dssp HHHHHHHHHHHHST-T-CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-C-CChhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777766 3 232222 235666777777777777666443
No 14
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=36.84 E-value=1.1e+02 Score=21.61 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 10 RMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 10 RmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~ 57 (72)
..||.....+..++..-..--|+. .++.++++.+...|-+++|.+-+
T Consensus 154 niRrda~~~lKk~~K~~~isEDe~-k~~e~eiQklTd~~i~~iD~~l~ 200 (209)
T 4gfq_A 154 NVRRDGNDDLKKLEKAGEITEDDL-RGYTEDIQKETDKYIAKVDEIAK 200 (209)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666653221112222 24555666666666666666544
No 15
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=36.57 E-value=1e+02 Score=21.12 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~ 57 (72)
+++..|++|.+....+|.+.+.+
T Consensus 63 lR~~Ae~eN~rkR~~ke~~~~~~ 85 (197)
T 1dkg_A 63 LRVKAEMENLRRRTELDIEKAHK 85 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777766666554
No 16
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=35.85 E-value=90 Score=20.30 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 15 HQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSREL 52 (72)
Q Consensus 15 HqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kEl 52 (72)
.+.-+..+...+-.++|.++..|++.|+.-...|-...
T Consensus 88 ~~~~l~~l~~~~~~~lE~LK~~L~~rY~~e~~~~~~~~ 125 (146)
T 2xze_A 88 KKDTVKKLKEIAFPKAEELKAELLKRYTKEYTEYNEEK 125 (146)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777788899999999999987666664443
No 17
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=34.40 E-value=98 Score=20.33 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 20 LKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTL 57 (72)
Q Consensus 20 ~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~ 57 (72)
..+-.++..+.+.++.+|+++++.++....-=++.+..
T Consensus 70 ~e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~ 107 (185)
T 3r2p_A 70 QEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQK 107 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666665544433333333
No 18
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=33.42 E-value=80 Score=20.15 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy338 41 YETLLQQFSRELEKLTLKHTSELEKKAKL 69 (72)
Q Consensus 41 ~e~~~~~~~kElekL~~kh~~eleK~~K~ 69 (72)
.|..+-.|..|+++|.++-...+|+..+-
T Consensus 66 ier~rl~ykreie~l~~~ekeime~ls~l 94 (99)
T 3aei_A 66 IERSRLVYKREIEKLKKREKEIMEELSKL 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778899999999999999999887653
No 19
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=31.58 E-value=1e+02 Score=22.46 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDK 39 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdk 39 (72)
||.+-++.+..+-.++.--+++++.++.+
T Consensus 108 Lr~~L~~dlEelR~~L~Py~~el~~~l~~ 136 (307)
T 2l7b_A 108 AQARLGADMEDVCGRLVQYRGEVQAMLGQ 136 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 20
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.09 E-value=1e+02 Score=18.94 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy338 5 MSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTS 61 (72)
Q Consensus 5 MsgYKRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ 61 (72)
+++++-....=..+|..+|.....+++.+...+. .+|..+.....++.+...-++.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~-~lE~eL~~~r~e~~~ql~EYq~ 69 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRMLT-DKEREMAEIRDQMQQQLNDYEQ 69 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444556777777777777777777663 3555555555555555444443
No 21
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=28.53 E-value=1.7e+02 Score=21.28 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 7 GYKRMRREHQAALLK---------------LEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLT 56 (72)
Q Consensus 7 gYKRmRrqHqkqL~~---------------Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~ 56 (72)
.++.++.+-.+.|.. +=.+|..+.+.++.+|.+++|.++....--++.|.
T Consensus 67 el~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~ 131 (307)
T 2l7b_A 67 ELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQ 131 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666644 23455555666666666666666655554444443
No 22
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=28.18 E-value=1.6e+02 Score=20.90 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFS 49 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~ 49 (72)
|+...++.+..|-.++..=.++++.++....+.++....
T Consensus 60 l~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~ 98 (273)
T 3s84_A 60 LRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLR 98 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445555555555555555555555555555555544443
No 23
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.72 E-value=1.1e+02 Score=18.97 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDK 39 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdk 39 (72)
+|++-..+|.+|-.++-.|++.|+..++.
T Consensus 34 frqkekEqL~~LKkkl~~el~~h~~ei~~ 62 (84)
T 1gmj_A 34 FRARAKEQLAALKKHKENEISHHAKEIER 62 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666778888888888888888876653
No 24
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=26.06 E-value=1.4e+02 Score=19.83 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy338 8 YKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 64 (72)
Q Consensus 8 YKRmRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ele 64 (72)
-..+|..=++.+..+-.++.-=+++++.++..-.|.++..+.-=++.|..++...+|
T Consensus 97 ~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~e 153 (165)
T 1gs9_A 97 LQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344566666666666666666677777777655555555444444444444444443
No 25
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction, receptor complex, hydrolase, TR protein, ADP binding, coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae} PDB: 3zs8_C
Probab=31.75 E-value=14 Score=22.98 Aligned_cols=23 Identities=4% Similarity=0.156 Sum_probs=18.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q psy338 3 EQMSGYKRMRREHQAALLKLEEK 25 (72)
Q Consensus 3 EQMsgYKRmRrqHqkqL~~Le~k 25 (72)
+++..|-++||+|-|-+.+||..
T Consensus 43 DEFAKWAKL~Rk~dKl~~ele~~ 65 (84)
T 3b2e_E 43 DNYAKWTKNNRKLDSLDKEINNL 65 (84)
Confidence 45678999999999888887753
No 26
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.21 E-value=40 Score=21.47 Aligned_cols=22 Identities=5% Similarity=0.194 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q psy338 3 EQMSGYKRMRREHQAALLKLEE 24 (72)
Q Consensus 3 EQMsgYKRmRrqHqkqL~~Le~ 24 (72)
+++..|-++||+|-|-+.+||.
T Consensus 53 DEFAKWAKL~Rk~DKl~~ele~ 74 (94)
T 3vlc_E 53 DNYAKWTKNNRKLDSLDKEINN 74 (94)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988887764
No 27
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=24.44 E-value=1.1e+02 Score=20.70 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy338 37 LDKEYETLLQQFSRELEKLTLK 58 (72)
Q Consensus 37 LdkE~e~~~~~~~kElekL~~k 58 (72)
++.|++.+-..++.|.-+|..+
T Consensus 8 iQ~e~~~l~~~~~~e~~~le~k 29 (193)
T 3kyp_A 8 IQKDIEQLDIKCAHEQMNIQKQ 29 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 28
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.91 E-value=81 Score=21.62 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy338 24 EKCKIEMDQHKSLLDKEYETLL 45 (72)
Q Consensus 24 ~k~k~Eme~h~~kLdkE~e~~~ 45 (72)
-|+.+|+++.+.+..+|.+...
T Consensus 63 lR~~Ae~eN~rkR~~ke~~~~~ 84 (197)
T 1dkg_A 63 LRVKAEMENLRRRTELDIEKAH 84 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766655
No 29
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.54 E-value=2e+02 Score=19.91 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHh
Q psy338 14 EHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQ-FSRELEKLTLKHTSELEKKAK 68 (72)
Q Consensus 14 qHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~-~~kElekL~~kh~~eleK~~K 68 (72)
-|||++. +|.+||......++|--..+..+ ...--..|--+-..+||-.+|
T Consensus 57 ~HQKEi~----~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLK 108 (167)
T 4gkw_A 57 AHQKEIG----KLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLK 108 (167)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHH
T ss_pred HHHHHHH----HHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHh
Confidence 4888875 67889999999998864444322 222233344444445555444
No 30
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.98 E-value=1.5e+02 Score=18.05 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 21 KLEEKCKIEMDQHKSLLDKEYETL 44 (72)
Q Consensus 21 ~Le~k~k~Eme~h~~kLdkE~e~~ 44 (72)
+.|+|++.-+-+.-..-+.|++++
T Consensus 7 AVeDKLRrrl~E~~~q~qaEl~sL 30 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAELNAL 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444433333333343333
No 31
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.21 E-value=1.7e+02 Score=18.29 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy338 40 EYETLLQQFSRELEKLTLKHTSELEK 65 (72)
Q Consensus 40 E~e~~~~~~~kElekL~~kh~~eleK 65 (72)
++|+...+..-|+.=|.+-|..|+--
T Consensus 87 dLE~~iesL~eEl~FLKk~heeEl~e 112 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKKLHEEEIQE 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666667777777777776643
Done!