Query psy338
Match_columns 72
No_of_seqs 49 out of 51
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 23:33:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy338.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/338hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 71.8 4 0.00029 24.5 5.0 54 11-64 79-132 (144)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 53.3 16 0.0012 21.6 5.2 50 11-60 68-117 (144)
3 d2bzba1 a.30.7.1 (A:1-54) Hypo 26.0 19 0.0014 19.7 2.0 16 45-60 31-46 (54)
4 d2c0sa1 a.30.7.1 (A:1-57) Hypo 20.4 29 0.0021 19.1 2.0 17 46-62 32-48 (57)
5 d1xppa_ d.74.3.2 (A:) DNA-dire 19.0 72 0.0052 17.8 3.8 25 35-59 75-99 (99)
6 d1u5ta1 a.4.5.54 (A:20-164) Va 14.5 45 0.0033 20.9 2.1 26 40-65 12-37 (145)
7 d2di4a1 a.269.1.1 (A:406-607) 10.7 1.7E+02 0.012 17.3 6.0 35 33-67 138-172 (202)
8 d1y2oa1 a.238.1.3 (A:1-248) BA 10.4 1.8E+02 0.013 17.5 6.8 31 28-58 114-147 (248)
9 d1y71a1 b.34.16.1 (A:4-127) Ki 9.8 59 0.0043 20.1 1.5 33 16-48 90-122 (124)
10 d2a7la1 d.20.1.1 (A:1-117) Ubi 8.8 38 0.0028 19.2 0.2 14 33-46 4-17 (117)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=71.84 E-value=4 Score=24.54 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 64 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~~ele 64 (72)
+|..-...+..+-.++..-+++.+.+++..++.++....--.+.|+.++...++
T Consensus 79 lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~e 132 (144)
T d1gs9a_ 79 AQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 132 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444555555445555555554444
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=53.30 E-value=16 Score=21.63 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy338 11 MRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHT 60 (72)
Q Consensus 11 mRrqHqkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~~kElekL~~kh~ 60 (72)
+|..-.+.+..|-.++...|++.+.+|..-.+.++.....-++.++.+-.
T Consensus 68 ~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~ 117 (144)
T d1gs9a_ 68 TRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLA 117 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555444444444433
No 3
>d2bzba1 a.30.7.1 (A:1-54) Hypothetical protein BAS1536 {Bacillus anthracis [TaxId: 1392]}
Probab=25.95 E-value=19 Score=19.67 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy338 45 LQQFSRELEKLTLKHT 60 (72)
Q Consensus 45 ~~~~~kElekL~~kh~ 60 (72)
.-.||.|+|+|.++-.
T Consensus 31 Vl~~SqelDkLIN~~m 46 (54)
T d2bzba1 31 VLLFSRDLDKLINKFM 46 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3468999999987643
No 4
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=20.44 E-value=29 Score=19.08 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy338 46 QQFSRELEKLTLKHTSE 62 (72)
Q Consensus 46 ~~~~kElekL~~kh~~e 62 (72)
-.||.|||+|.+.-...
T Consensus 32 l~~SQELD~LIN~~m~~ 48 (57)
T d2c0sa1 32 ISFSQELDRLLNLLIEL 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999998875543
No 5
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=18.96 E-value=72 Score=17.82 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 35 SLLDKEYETLLQQFSRELEKLTLKH 59 (72)
Q Consensus 35 ~kLdkE~e~~~~~~~kElekL~~kh 59 (72)
..+-.+++.+..+|.+++++.+..|
T Consensus 75 ~~li~~~~~l~~~~~~~~~~~~~~~ 99 (99)
T d1xppa_ 75 RKLSKLYEDLGTQFQKEFQRYESDH 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3556677777778887777766543
No 6
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.55 E-value=45 Score=20.88 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy338 40 EYETLLQQFSRELEKLTLKHTSELEK 65 (72)
Q Consensus 40 E~e~~~~~~~kElekL~~kh~~eleK 65 (72)
++.++++.|..=|+..+.+|..++-+
T Consensus 12 ql~~QL~vF~~~L~~FA~kH~~eI~~ 37 (145)
T d1u5ta1 12 ELRDQLMVFQERLVEFAKKHNSELQA 37 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence 46677788999999999999987643
No 7
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=10.71 E-value=1.7e+02 Score=17.30 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy338 33 HKSLLDKEYETLLQQFSRELEKLTLKHTSELEKKA 67 (72)
Q Consensus 33 h~~kLdkE~e~~~~~~~kElekL~~kh~~eleK~~ 67 (72)
....+|.|...+.+.-...-..+-..|...|++-+
T Consensus 138 ~~~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~la 172 (202)
T d2di4a1 138 LLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVV 172 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34456666666666666666666666666666544
No 8
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.44 E-value=1.8e+02 Score=17.52 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy338 28 IEMDQHKSLLDKEYETLLQ---QFSRELEKLTLK 58 (72)
Q Consensus 28 ~Eme~h~~kLdkE~e~~~~---~~~kElekL~~k 58 (72)
-..-+++.+.++++..... .+..++.++.++
T Consensus 114 k~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk 147 (248)
T d1y2oa1 114 RYLSAALKKYQTEQRSKGDALDKCQAELKKLRKK 147 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666665544443 344455555554
No 9
>d1y71a1 b.34.16.1 (A:4-127) Kinase-associated protein B {Bacillus cereus [TaxId: 1396]}
Probab=9.84 E-value=59 Score=20.11 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy338 16 QAALLKLEEKCKIEMDQHKSLLDKEYETLLQQF 48 (72)
Q Consensus 16 qkqL~~Le~k~k~Eme~h~~kLdkE~e~~~~~~ 48 (72)
|..+..++++|+.++..+-.+-=..|+.+..-|
T Consensus 90 q~A~~~~~~~L~~~~s~~a~~sL~~L~~LkkdY 122 (124)
T d1y71a1 90 KLALETQMNSFSEDDSPFAERSLETLQQLKKDY 122 (124)
T ss_dssp HHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhh
Confidence 456777777777777766665555555554443
No 10
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.84 E-value=38 Score=19.17 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q psy338 33 HKSLLDKEYETLLQ 46 (72)
Q Consensus 33 h~~kLdkE~e~~~~ 46 (72)
..++|.+||.++.+
T Consensus 4 ~~kRL~kEl~~l~~ 17 (117)
T d2a7la1 4 MQKRLQKELLALQN 17 (117)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34677777776643
Done!