RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy338
         (72 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.4 bits (60), Expect = 0.36
 Identities = 9/66 (13%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 5   MSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSELE 64
           ++   R+ +E ++ + K  E+ +  + +  +      +   ++  ++LE+   + + ++E
Sbjct: 74  IAQADRLTQEPES-IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132

Query: 65  KKAKLN 70
           K    N
Sbjct: 133 KNKINN 138


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 0.62
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 20  LKLEEKCKIEMDQ--HKSLLDKEYETLLQQFSRELEKLTL 57
           + LE K K+E +   H+S++D  Y       S +L    L
Sbjct: 431 IYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYL 469



 Score = 25.2 bits (54), Expect = 2.5
 Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)

Query: 30 MDQHKSLLDKEYETLLQQFSRELEK-LTLKHTSELEKKA 67
          MD        +Y+ +L  F          K   ++ K  
Sbjct: 7  MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI 45



 Score = 24.8 bits (53), Expect = 3.5
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 34  KSLLDKEYETLLQQFSRELEKLTLKHTSELEKKAKLNTS 72
           + +L   Y+ L+     E  + ++     +E++ +L   
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122


>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
           oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
           3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
           1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
          Length = 501

 Score = 24.7 bits (54), Expect = 2.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 50  RELEKLTLKHTSELEKK 66
            ELEK+T + T EL KK
Sbjct: 139 NELEKITRRFTMELAKK 155


>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
           cytoplasm, ribonucleoprotein, structural protein; 3.50A
           {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
          Length = 861

 Score = 23.6 bits (50), Expect = 8.6
 Identities = 13/68 (19%), Positives = 21/68 (30%)

Query: 3   EQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQFSRELEKLTLKHTSE 62
           E MS         +A      E  +IE +        + + L  +   ELE++      E
Sbjct: 710 EAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREME 769

Query: 63  LEKKAKLN 70
           L       
Sbjct: 770 LIYARAQL 777


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.124    0.325 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 974,983
Number of extensions: 42733
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 28
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.1 bits)