RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy338
         (72 letters)



>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
           C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 202

 Score = 22.5 bits (47), Expect = 6.4
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 1   MHEQMSGYKRMRREHQAALLKLEEKCKIEMDQHKSLLDKEYETLLQQ---FSRELEKLTL 57
           +       + +  E +  + +  EK K  ++++K  L    + LL++      E  ++  
Sbjct: 132 VDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFK 191

Query: 58  KHTSELEKKAK 68
            +  EL+ K K
Sbjct: 192 LYGIELKDKCK 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.124    0.325 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 234,590
Number of extensions: 8663
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 12
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (21.8 bits)