RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3380
(290 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 220 bits (562), Expect = 4e-69
Identities = 112/312 (35%), Positives = 155/312 (49%), Gaps = 38/312 (12%)
Query: 4 CEVQKRWLQPLLDVLARNSSHVVSPLIANICDDTFELRFPPGRLTSSYKFFIGGFDWNLQ 63
CE WL+PLL + + VV P+I I DDTFE + GGF+W L
Sbjct: 125 CECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYM-------AGSDMTYGGFNWKLN 177
Query: 64 FNWHAIPERERKRHK-NAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENLELS 122
F W+ +P+RE R K + PV TPTMAGGLFSID+ +F+++GTYD+G DIWGGENLE+S
Sbjct: 178 FRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEIS 237
Query: 123 FKFNWHA------IPERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWG 176
F+ W + A P P G + + + + + F +
Sbjct: 238 FRI-WQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAE--VWMDEFKNFF 294
Query: 177 GENLELSFKGDFGDVTSRKELRRNLGCKSFKWYLE-----------------VSNDWSGM 219
K D+GD++SR LRR L CK F WYLE + N +
Sbjct: 295 YIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQ 354
Query: 220 CIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLDYA--GGDVILYPCHG 277
C+D+ ++ VG++ CH GGNQ + + + EIR D+ CLD + G V + CH
Sbjct: 355 CLDN--MARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHH 412
Query: 278 SKGNQYFEYDYK 289
KGNQ +EYD
Sbjct: 413 LKGNQLWEYDPV 424
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 217 bits (553), Expect = 2e-67
Identities = 98/312 (31%), Positives = 143/312 (45%), Gaps = 37/312 (11%)
Query: 4 CEVQKRWLQPLLDVLARNSSHVVSPLIANICDDTFELRFPPGRLTSSYKFFIGGFDWNLQ 63
CE + WL+PLL+ +A + + VVSP+I I D F+ + GGFDWNL
Sbjct: 157 CECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYV-------GASADLKGGFDWNLV 209
Query: 64 FNWHAI-PERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENLELS 122
F W + PE+ R R N P+ TP +AGGLF +DK +FE+LG YD D+WGGENLE+S
Sbjct: 210 FKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEIS 269
Query: 123 FK-----FNWHAIPERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGG 177
F+ + IP P P +G +F+ + + + + +
Sbjct: 270 FRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAE--VWMDEYKNFYY 327
Query: 178 ENLELSFKGDFGDVTSRKELRRNLGCKSFKWYLE----------VSNDWSG------MCI 221
+ + +G++ SR ELR+ L CK FKWYLE + G C+
Sbjct: 328 AAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCL 387
Query: 222 DSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLDY----AGGDVILYPCHG 277
D VG+Y CH GGNQ W ++K ++ + CL G + L C
Sbjct: 388 D--TLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRE 445
Query: 278 SKGNQYFEYDYK 289
+ Q +E
Sbjct: 446 NDSRQKWEQIEG 457
Score = 40.9 bits (95), Expect = 3e-04
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 25/94 (26%)
Query: 192 TSRKELRRNLGCKSFKWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMM- 250
T K ++ C L V + G + L C + Q W
Sbjct: 415 TKEKSVKHMDLC------LTVVDRAPG-------------SLIKLQGCRENDSRQKWEQI 455
Query: 251 SKHGEIR--RDEACLDY---AGGDVILYPCHGSK 279
+ ++R CLD G + + C +
Sbjct: 456 EGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPAL 489
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 187 bits (476), Expect = 1e-55
Identities = 93/326 (28%), Positives = 132/326 (40%), Gaps = 57/326 (17%)
Query: 4 CEVQKRWLQPLLDVLARNSSHVVSPLIANICDDTFELRFPPGRLTSSYKFFIGGFDWNLQ 63
CE WL PLLD +ARN +V P+I I D F G G FDW +
Sbjct: 207 CEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDA------MRGAFDWEMY 260
Query: 64 FNWHAIPERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENLELSF 123
+ IP +K + +P +P MAGGLF++D+ +F +LG YD G +IWGGE E+SF
Sbjct: 261 YKRIPIPPELQKADPS--DPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISF 318
Query: 124 KFNWHA------IPERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGG 177
K W IP P P ++ + + Y
Sbjct: 319 KV-WMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVSLARNLKRVAEVWMDEYAEYI----Y 373
Query: 178 ENLELSFKGDFGDVTSRKELRRNLGCKSFKWYL----------------------EVSND 215
+ GDV +K+LR +L CKSFKW++ E+ N
Sbjct: 374 QRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNV 433
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGN------QFWMMSKHGEIR------RDEACL 263
+G+C D+ K + P+ L C + G Q + + +IR + C
Sbjct: 434 GTGLCADT--KHGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCF 491
Query: 264 DYA--GGDVILYPCHGSKGNQYFEYD 287
D V LY CH KGNQ ++Y
Sbjct: 492 DAISHTSPVTLYDCHSMKGNQLWKYR 517
Score = 49.1 bits (116), Expect = 8e-07
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 192 TSRKELRRNLGCKSFKWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMS 251
T R+++R + K C D PV LY CH GNQ W
Sbjct: 473 TWREDIRPGDPQHTKK-----------FCFD----AISHTSPVTLYDCHSMKGNQLWKYR 517
Query: 252 KHGEIR--RDEACLDY--AGGDVILYPCHGSKGNQ 282
K + +C+D + + + C+ S Q
Sbjct: 518 KDKTLYHPVSGSCMDCSESDHRIFMNTCNPSSLTQ 552
>3a07_A Actinohivin; carbohydrate-binding module family 13, antiviral
protein, LE; 1.19A {Actinomycete}
Length = 118
Score = 62.5 bits (152), Expect = 1e-12
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYAGG 268
+ N +G +DS + + V P + G Q W G +R + CLD
Sbjct: 8 TIRNAQTGRLLDS-----NYNGNVYTLPAN-GGNYQRWTGPGDGTVRNAQTGRCLDSNYD 61
Query: 269 D-VILYPCHGSKGNQYFEYD 287
V PC+G Q + +
Sbjct: 62 GAVYTLPCNGG-SYQKWLFY 80
Score = 51.7 bits (124), Expect = 9e-09
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYAGG 268
V N +G C+DS V PC+ G Q W+ +G I+ E LD
Sbjct: 46 TVRNAQTGRCLDSN-----YDGAVYTLPCN-GGSYQKWLFYSNGYIQNVETGRVLDSNYN 99
Query: 269 D-VILYPCHGSKGNQ 282
V P +G Q
Sbjct: 100 GNVYTLPANGG-NYQ 113
>1ggp_B TKL-1, protein (lectin 1 B chain); sugar binding protein; 2.70A
{Trichosanthes kirilowii} SCOP: b.42.2.1 b.42.2.1
Length = 254
Score = 64.1 bits (155), Expect = 4e-12
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLD---YAGGDVIL 272
G C D + + + L C + NQ W + + IR + CL +
Sbjct: 11 RDGFCADVNGEGQN-GAAIILKKCA-ENDNQLWTLKREATIRSNGGCLTTAAAEQAKAGI 68
Query: 273 YPCHGSKGNQ 282
Y C +
Sbjct: 69 YDCTQATAEL 78
Score = 41.7 bits (97), Expect = 1e-04
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--RDEACLDYAGGD----- 269
+ K + L C +Q W+ G I D+ +D G
Sbjct: 178 TNSDNCLTSAADAGPKTILLALCSG-PASQRWVFDDDGSILSLYDDKQMDSEGAAAAAKQ 236
Query: 270 VILYPCHGSKGNQ 282
+IL+ NQ
Sbjct: 237 IILWWNAAEP-NQ 248
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 208 WYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLD--- 264
+ + + +C+ + P + + C Q W + IR + +
Sbjct: 130 ASVTQISGSAQLCMQAGNGPA----NLWMSECRAGKAEQQWALLTDKSIRSETNSDNCLT 185
Query: 265 ----YAGGDVILYPCHGSKGNQYFEYD 287
++L C G +Q + +D
Sbjct: 186 SAADAGPKTILLALCSGP-ASQRWVFD 211
>2aai_B Ricin (B chain); glycosidase; HET: GAL BGC NDG NAG BMA MAN; 2.50A
{Ricinus communis} SCOP: b.42.2.1 b.42.2.1 PDB: 3rti_B*
3rtj_B* 1rzo_B*
Length = 262
Score = 63.5 bits (154), Expect = 6e-12
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGG-NQFWMMSKHGEIRRDEACLDYAGG----DV 270
+G+C+D + L+PC NQ W + + IR + CL G V
Sbjct: 16 RNGLCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSPGVYV 75
Query: 271 ILYPCHGS-KGNQYFEYD 287
++Y C+ + ++
Sbjct: 76 MIYDCNTAATDATRWQIW 93
Score = 51.6 bits (123), Expect = 7e-08
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 205 SFKWYLE----VSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--- 257
+ +W + + N S + + + + + + +Q W+ + + +
Sbjct: 87 ATRWQIWDNGTIINPRSSLVLAAT--SGNSGTTLTVQTNI-YAVSQGWLPTNNTQPFVTT 143
Query: 258 ---RDEACLDYAGGDVILYPCHGSKGNQYFEYDYKY 290
CL G V + C K Q +
Sbjct: 144 IVGLYGLCLQANSGQVWIEDCSSEKAEQQWALYADG 179
Score = 51.2 bits (122), Expect = 9e-08
Identities = 20/86 (23%), Positives = 23/86 (26%), Gaps = 11/86 (12%)
Query: 207 KWYLEVSNDW---SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--RDEA 261
+W L V + C Q WM G I
Sbjct: 172 QWALYADGSIRPQQNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGL 231
Query: 262 CLDYAGGD-----VILYPCHGSKGNQ 282
LD D +ILYP HG NQ
Sbjct: 232 VLDVRASDPSLKQIILYPLHGD-PNQ 256
Score = 45.4 bits (107), Expect = 6e-06
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 13/87 (14%)
Query: 208 WYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA---CLD 264
++ G+C+ + V + C + Q W + G IR + CL
Sbjct: 139 PFVTTIVGLYGLCLQAN------SGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLT 192
Query: 265 YA----GGDVILYPCHGSKGNQYFEYD 287
V + C + Q + +
Sbjct: 193 SDSNIRETVVKILSCGPASSGQRWMFK 219
>1abr_B Abrin-A; glycosidase/carbohydrate complex, lectin, lectin
(agglutinin), glycoprotein, plant SEED protein, plant
toxin; HET: NDG NGZ MAN BMA BGC; 2.14A {Abrus
precatorius} SCOP: b.42.2.1 b.42.2.1 PDB: 2zr1_B*
2q3n_B*
Length = 267
Score = 60.5 bits (146), Expect = 6e-11
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCH-KQGGNQFWMMSKHGEIRRDEACLDYA----GGDV 270
GMC+D + ++ C + NQ W + IR + CL G V
Sbjct: 21 RDGMCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNGKCLTTYGYAPGSYV 80
Query: 271 ILYPCHGSKGNQ 282
++Y C +
Sbjct: 81 MIYDCTSAVAEA 92
Score = 43.6 bits (102), Expect = 3e-05
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYAGGD---- 269
K + L C +Q W+ G I +D G D
Sbjct: 189 VQNTNNCLTSKDHKQGSTILLMGCSNGWASQRWVFKNDGSIYSLYDDMVMDVKGSDPSLK 248
Query: 270 -VILYPCHGSKGNQ 282
+IL+P G NQ
Sbjct: 249 QIILWPYTGK-PNQ 261
Score = 42.1 bits (98), Expect = 1e-04
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 206 FKWYL----EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR---- 257
W + + N S + + + + M + + Q W +
Sbjct: 93 TYWEIWDNGTIINPKSALVLSAES--SSMGGTLTVQTNEY-LMRQGWRTGNNTSPFVTSI 149
Query: 258 --RDEACLDYAGGDVILYPCHGSKGNQYFEYDY 288
+ C+ G +V + C +K Q +
Sbjct: 150 SGYSDLCMQAQGSNVWMADCDSNKKEQQWALYT 182
Score = 39.0 bits (90), Expect = 0.001
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 203 CKSFKWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDE-- 260
+ ++ S + + S V + C Q W + G IR +
Sbjct: 133 RQGWRTGNNTSPFVTSISGYSDLCMQAQGSNVWMADCDSNKKEQQWALYTDGSIRSVQNT 192
Query: 261 -ACLDYA----GGDVILYPCHGSKGNQYFEYD 287
CL G ++L C +Q + +
Sbjct: 193 NNCLTSKDHKQGSTILLMGCSNGWASQRWVFK 224
Score = 36.3 bits (83), Expect = 0.008
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 9/79 (11%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQF-WMMSKHGEIRRDEA--CLDYAGGD---- 269
+G C+ + V +Y C W + +G I ++ L
Sbjct: 65 NGKCLTTY--GYAPGSYVMIYDCTSAVAEATYWEIWDNGTIINPKSALVLSAESSSMGGT 122
Query: 270 VILYPCHGSKGNQYFEYDY 288
+ + + +
Sbjct: 123 LTVQTNEYLMRQGWRTGNN 141
>2ao3_A 29-kDa galactose-binding lectin; earthworm lumbricus terrestris,
hemagglutinin, R-type lectin, beta-trefoil fold, sugar
complex; HET: MGC; 1.80A {Lumbricus terrestris} PDB:
2d12_A* 2zqo_A* 2zqn_A* 2dry_A* 2drz_A* 2ds0_A*
Length = 130
Score = 57.9 bits (140), Expect = 7e-11
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 207 KWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGG--NQFWMMSKHGEIRRDE--AC 262
K++ + ++ +G +D + + + K NQ W + G IR
Sbjct: 2 KFFY-IKSELNGKVLDIEGQNPAPGSKIITWDQKKGPTAVNQLWYTDQQGVIRSKLNDFA 60
Query: 263 LDYAGGDVILYPCHGSKGNQYFEYD 287
+D + + P + + +
Sbjct: 61 IDASHEQIETQPFDPNNPKRAWIVS 85
Score = 42.1 bits (99), Expect = 3e-05
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 207 KWYL----EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA- 261
WY + + + ID++ + + P + W++S + + +
Sbjct: 43 LWYTDQQGVIRSKLNDFAIDASHEQ------IETQPFDPNNPKRAWIVSGNTIAQLSDRD 96
Query: 262 -CLDYAGGD------VILYPCHGSKGNQ 282
LD D + + HG NQ
Sbjct: 97 IVLDIIKSDKEAGAHICAWKQHGGP-NQ 123
>1knl_A Endo-1,4-beta-xylanase A; carbohydrate binding module, CBM13 xylan
binding domain, LEC ricin B-like, beta-trefoil fold,
hydrolase; 1.20A {Streptomyces lividans} SCOP: b.42.2.1
PDB: 1knm_A* 1mc9_A*
Length = 130
Score = 57.7 bits (140), Expect = 8e-11
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRR-DEACLDYAGG- 268
++ SG C+D T + L+ CH G NQ W + GE+R + CLD AG
Sbjct: 8 QIKGVGSGRCLDVPDASTSDGTQLQLWDCH-SGTNQQWAATDAGELRVYGDKCLDAAGTS 66
Query: 269 ---DVILYPCHGSKGNQYFEYD 287
V +Y C G NQ + +
Sbjct: 67 NGSKVQIYSCWGG-DNQKWRLN 87
Score = 38.1 bits (89), Expect = 6e-04
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 207 KWYLEVSNDW---SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA-- 261
+W + + C+D+A T V +Y C G NQ W ++ G + ++
Sbjct: 43 QWAATDAGELRVYGDKCLDAA--GTSNGSKVQIYSCWG-GDNQKWRLNSDGSVVGVQSGL 99
Query: 262 CLDYAGG------DVILYPCHGSKGNQ 282
CLD G + LY C NQ
Sbjct: 100 CLDAVGNGTANGTLIQLYTCSNG-SNQ 125
Score = 28.4 bits (64), Expect = 1.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 207 KWYLE----VSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFW 248
KW L V SG+C+D+ T + LY C G NQ W
Sbjct: 83 KWRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCS-NGSNQRW 127
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 59.0 bits (142), Expect = 2e-10
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGG-NQFWMMSKHGEIRRDEACLD----YAGGDV 270
+GM +D + L+P NQ W + K G IR + +CL AG V
Sbjct: 17 RNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYTAGVYV 76
Query: 271 ILYPCHGS-KGNQYFEYD 287
+++ C+ + + ++
Sbjct: 77 MIFDCNTAVREATIWQIW 94
Score = 44.8 bits (105), Expect = 1e-05
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--RDEACLDYAGGD----- 269
C+ + + + + C Q W+ + G I ++ +D A +
Sbjct: 188 QSQCLTNG--RDSISTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANPSLQR 245
Query: 270 VILYPCHGSKGNQ 282
+I+YP G+ NQ
Sbjct: 246 IIIYPATGN-PNQ 257
Score = 41.3 bits (96), Expect = 2e-04
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 202 GCKSFKWYL----EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR 257
++ W + + N S + + ++ + + Q W+ R
Sbjct: 85 VREATIWQIWGNGTIINPRSNLVLAAS--SGIKGTTLTVQTLD-YTLGQGWLAGNDTAPR 141
Query: 258 RDEA------CLDYAGGDVILYPCHGSKGNQYFEYDYKY 290
C++ AGG V + C + NQ +
Sbjct: 142 ETTIYGFRDLCMESAGGSVYVETCTAGQENQRWALYGDG 180
Score = 39.8 bits (92), Expect = 5e-04
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 206 FKWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA---C 262
+ +C++SA V + C NQ W + G IR + C
Sbjct: 138 TAPRETTIYGFRDLCMESA------GGSVYVETCTAGQENQRWALYGDGSIRPKQLQSQC 191
Query: 263 LDYA----GGDVILYPCHGSKGNQYFEYD 287
L + + C Q + +
Sbjct: 192 LTNGRDSISTVINIVSCSAGSSGQRWVFT 220
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 58.6 bits (141), Expect = 5e-10
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 214 NDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--------RDEACLDY 265
N SG C+D +D +G+Y C +Q++ + G + + CLD
Sbjct: 113 NLASGKCLDIE--GSDGTGDIGVYDCQ-NLDDQYFYVRSRGPELFYGRLRNEKSDLCLDV 169
Query: 266 A----GGDVILYPCHGSKGNQYFEYD 287
G+V++Y C + +Q+F Y
Sbjct: 170 EGSDGKGNVLMYSCEDN-LDQWFRYY 194
Score = 55.5 bits (133), Expect = 5e-09
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 209 YLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYA 266
Y + N+ S +C+D +D V +Y C +Q++ ++GEI ++ CLD
Sbjct: 155 YGRLRNEKSDLCLDVE--GSDGKGNVLMYSCE-DNLDQWFRYYENGEIVNAKSGMCLDVE 211
Query: 267 GGD----VILYPCHGSKGNQYFEYD 287
G D V +Y C +Q +
Sbjct: 212 GSDGSGNVGIYRCDDL-RDQMWSRP 235
Score = 43.6 bits (102), Expect = 4e-05
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 207 KWYL----EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA- 261
+ E+ N SGMC+D VG+Y C +Q W +
Sbjct: 190 WFRYYENGEIVNAKSGMCLDVEGSDGS--GNVGIYRCD-DLRDQMWSRPNAYCNGDYCSF 246
Query: 262 -------CLDYAGG----DVILYPCHGSKGNQYFEYDY 288
CLD +G DV + C G +Q F++ +
Sbjct: 247 LNKESNKCLDVSGDQGTGDVGTWQCDGLP-DQRFKWVF 283
Score = 38.6 bits (89), Expect = 0.002
Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 20/96 (20%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--------- 261
+ N+ C + +Q W + +
Sbjct: 53 TIRNEARNYCFTPDGSGNANVMSSPCTLYPEIPSSQRWRQGRRKTFTDNGGIEQVATEII 112
Query: 262 ------CLDYAGGD----VILYPCHGSKGNQYFEYD 287
CLD G D + +Y C +QYF
Sbjct: 113 NLASGKCLDIEGSDGTGDIGVYDCQNL-DDQYFYVR 147
Score = 37.0 bits (85), Expect = 0.006
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYAG- 267
E+ + S C+D + Y C +Q ++ G IR + C G
Sbjct: 12 ELRSFKSKQCVDIV--GNQGSGNIATYDCD-GLSDQQIIICGDGTIRNEARNYCFTPDGS 68
Query: 268 --GDVILYPCH 276
+V+ PC
Sbjct: 69 GNANVMSSPCT 79
Score = 29.3 bits (65), Expect = 1.5
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 254 GEIRRDEA--CLDYAGGD----VILYPCHGSKGNQYFEY 286
GE+R ++ C+D G + Y C G +Q
Sbjct: 11 GELRSFKSKQCVDIVGNQGSGNIATYDCDGL-SDQQIII 48
>3c9z_A Agglutinin II, SNA-II; beta-trefoil, ricin-B domain, glycosylation,
glycoprotein, L sugar binding protein, plant protein;
HET: NAG FUC SO4; 1.35A {Sambucus nigra} PDB: 3ca0_A*
3ca1_A* 3ca3_A* 3ca4_A* 3ca5_A* 3ca6_A* 3cah_A* 1hwm_B*
1hwn_B* 1hwo_B* 1hwp_B*
Length = 258
Score = 54.6 bits (131), Expect = 6e-09
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLDYAGGD----VIL 272
G+C+D P+ L+PC NQ W IR C+ G + +++
Sbjct: 11 DGLCVDVRNGYDTDGTPLQLWPCG-TQRNQRWTFDSDDTIRSMGKCMTANGLNNGSNIVI 69
Query: 273 YPCHGSKGNQYFEYDY 288
+ C + +++
Sbjct: 70 FNCSTA-AENAIKWEV 84
Score = 46.1 bits (109), Expect = 4e-06
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYAGGD----- 269
S + + + + C +Q W + G I ++ +D +
Sbjct: 179 STRGLCVTTNGYNSKDLIIILKCQ-GLPSQRWFFNSDGAIVNPKSRLVMDVRASNVSLRE 237
Query: 270 VILYPCHGSKGNQ 282
+I++P G+ NQ
Sbjct: 238 IIIFPATGN-PNQ 249
Score = 40.4 bits (94), Expect = 3e-04
Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 7/87 (8%)
Query: 205 SFKWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA-CL 263
+ ++ + + + V + C Q W + IR + L
Sbjct: 124 TVTNNVKPIVASIVGYKEMCLQSNGENNGVWMEDCEATSLQQQWALYGDRTIRVNSTRGL 183
Query: 264 DYA------GGDVILYPCHGSKGNQYF 284
+I+ C G ++F
Sbjct: 184 CVTTNGYNSKDLIIILKCQGLPSQRWF 210
Score = 35.4 bits (81), Expect = 0.012
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQF-WMMSKHGEIRRDEACLD------YAGGD 269
G C+ + + + ++ C N W + G I + L +
Sbjct: 52 MGKCMTAN--GLNNGSNIVIFNCSTAAENAIKWEVPIDGSIINPSSGLVMTAPRAASRTI 109
Query: 270 VILYPCHGSKGNQYFEYDYKY 290
++L + +Q +
Sbjct: 110 LLLEDNIYA-ASQGWTVTNNV 129
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 54.1 bits (129), Expect = 2e-08
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 214 NDWSGMCIDSACKPTDMHKPVGLYPCHKQGG-NQFWMMSKHGEIRRDEACLDYAGG---- 268
+ +G+C+ + P+ L+PC + NQ W + + G IR + CL G
Sbjct: 321 SGRNGLCVRVRDGKYNNGNPIQLWPCKQNSDVNQLWTLRRDGTIRSNGKCLTTNGYSAGD 380
Query: 269 DVILYPCHGS-KGNQYFEY 286
V++Y C +++
Sbjct: 381 YVMIYDCRTPVTAASIWQF 399
Score = 46.8 bits (110), Expect = 5e-06
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 13/92 (14%)
Query: 207 KWYLE----VSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRR---- 258
W + N S + + + + + + Q W+ + E
Sbjct: 396 IWQFWANGTIINPQSALVLSAES--GNPRTTLTVQADIY-ASRQGWLAGNNTEPFVTSIV 452
Query: 259 --DEACLDYAGGDVILYPCHGSKGNQYFEYDY 288
++ C+ G + + C SK Q +
Sbjct: 453 GFNDLCMQANGDAMWVVECESSKAEQKWALYP 484
Score = 46.0 bits (108), Expect = 8e-06
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYAGGD----- 269
C+ S + + + C Q W+ G I + +D G D
Sbjct: 494 RDRCLTSTDNHSQ-GSIIIISSCSPGSEGQRWVFMNDGTILNLKNGLVMDVKGSDPSLHQ 552
Query: 270 VILYPCHGSKGNQ 282
+I++P G NQ
Sbjct: 553 IIIWPATGK-PNQ 564
Score = 45.2 bits (106), Expect = 1e-05
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 208 WYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA---CLD 264
++ ++ +C+ + + + C Q W + G IR + CL
Sbjct: 446 PFVTSIVGFNDLCMQAN------GDAMWVVECESSKAEQKWALYPDGSIRPHQDRDRCLT 499
Query: 265 YAGGD-----VILYPCHGSKGNQYFEYD 287
+I+ C Q + +
Sbjct: 500 STDNHSQGSIIIISSCSPGSEGQRWVFM 527
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY
motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG
EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A*
3a23_A*
Length = 614
Score = 40.9 bits (95), Expect = 3e-04
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR-RDEACLDYAGG- 268
V+ SG C D L+ C+ G NQ W + E+ CLD
Sbjct: 490 LVTGKQSGRCADIYNNTITNGTQAELWDCNG-GPNQSWTYTSRKELVLYGNKCLDAYNLG 548
Query: 269 -----DVILYPCHGSKGNQ 282
V+++ C+G +
Sbjct: 549 TTNGTKVVIWDCNGQANQK 567
Score = 36.7 bits (84), Expect = 0.008
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA--CLDYAGGD----- 269
C+D+ T V ++ C+ NQ W ++ G I A CLD
Sbjct: 538 GNKCLDAYNLGTTNGTKVVIWDCNG-QANQKWNINSDGTITNVNAGLCLDAYNAATANGT 596
Query: 270 -VILYPCHGSKGNQ 282
++L+ C NQ
Sbjct: 597 SLVLWSCGTG-DNQ 609
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble
monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A
{Vibrio cholerae} PDB: 3o44_A
Length = 721
Score = 39.5 bits (91), Expect = 0.001
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 222 DSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA---CLDYAGGDVILYPCHGS 278
++ C D + C Q Q ++ + G CLD A D L PC+ +
Sbjct: 474 NNRCIQVDAQGRLTANMCDSQQSAQSFIYDQLGRYVSASNTKLCLDGAALDA-LQPCNQN 532
Query: 279 KGNQYF 284
++
Sbjct: 533 LTQRWE 538
Score = 31.4 bits (70), Expect = 0.36
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 259 DEACLD-YAGGDVILYPCHGSKGNQYFEYD 287
+ C+ A G + C + Q F YD
Sbjct: 474 NNRCIQVDAQGRLTANMCDSQQSAQSFIYD 503
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar
BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Length = 165
Score = 35.8 bits (83), Expect = 0.006
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 209 YLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI------RRDEAC 262
Y ++ SG +D T V Y G NQ W + G+ R
Sbjct: 75 YYKLVARHSGKALDVENASTSDGANVIQYSYS-GGDNQQWRLVDLGDGYYKLVARHSGKA 133
Query: 263 LDYAGG------DVILYPCHGSKGNQYF 284
LD +VI Y G NQ +
Sbjct: 134 LDVENASTSDGANVIQYSYSGG-DNQQW 160
Score = 33.5 bits (77), Expect = 0.041
Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 15/93 (16%)
Query: 208 WYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGE------IRRDEA 261
+Y ++ SG +D T V Y G NQ W + G+ R
Sbjct: 28 YY-KLVARHSGKALDVENASTSDGANVIQYSYSG-GDNQQWRLVDLGDGYYKLVARHSGK 85
Query: 262 CLDYAGG------DVILYPCHGSKGNQYFEYDY 288
LD +VI Y G NQ +
Sbjct: 86 ALDVENASTSDGANVIQYSYSGG-DNQQWRLVD 117
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding,
carbohydrate-binding, sugar-binding, sugar binding
protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades}
PDB: 2iho_A*
Length = 293
Score = 35.8 bits (82), Expect = 0.010
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 209 YLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGG--NQFWMMSKHGEI-------RRD 259
+ N +SG +D ++ V + +Q W + K +
Sbjct: 59 TFTLCNLFSGTYMDLYNGSSEAGTAVNGWQGTAFTTNPHQLWTIKKSSDGTSYKIQNYGS 118
Query: 260 EACLDYAGGD------VILYPCHGSKG--NQYFEYD 287
+ +D GD + + +G +Q + ++
Sbjct: 119 KTFVDLVNGDSSDGAKIAGWTGTWDEGNPHQKWYFN 154
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin,
2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL
SIA; 1.70A {Polyporus squamosus}
Length = 286
Score = 35.1 bits (80), Expect = 0.020
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 21/101 (20%)
Query: 207 KWYLE---------VSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI- 256
W +E V N ++G +D A + Y G NQ W++S+ ++
Sbjct: 48 LWLIEPVGEADTYTVRNAFAGSYMDLAGHAATDGTAIIGYRPT-GGDNQKWIISQINDVW 106
Query: 257 ----RRDEACLD------YAGGDVILYPCHGSKGNQYFEYD 287
+ + G V+ + + +Q + +
Sbjct: 107 KIKSKETGTFVTLLNGDGGGTGTVVGWQNITNNTSQNWTFQ 147
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 34.5 bits (79), Expect = 0.036
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 6/122 (4%)
Query: 10 WLQPLLDVLARNSSHVVSPLIANICDDT---FELRFPPGRLTSSYKFFIGGFDWNLQFNW 66
W+Q +++LA + + + I + + +
Sbjct: 191 WVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQN 250
Query: 67 HAIPERE---RKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENLELSF 123
++ R + +GG + K + + G +D F WGGE+ E +
Sbjct: 251 KSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGY 310
Query: 124 KF 125
+
Sbjct: 311 RL 312
Score = 31.1 bits (70), Expect = 0.52
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 94 FSIDKAFFEKLGTYDSGFDIWGGENLELSFKFNWHAIPERERKRHKNAAEPVWTPTMAGG 153
F K+ ++ + + G +E + +W E + +GG
Sbjct: 224 FLSQKSLINEIPEIITNNQVAG--KVEQNKSVDWR--IEHFKNTDNLRLCNTPFRFFSGG 279
Query: 154 LFSIDKAFFEKLGTYDSGFDIWGGENLELSFK 185
+ K + + G +D F WGGE+ E ++
Sbjct: 280 NVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYR 311
Score = 27.2 bits (60), Expect = 8.3
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 21/112 (18%)
Query: 34 CDDTFELRFPPGRLTSSYKFFIGGFDWNLQFNWHAIPERERKRHKNAAE-PVWTPT---- 88
DD E P + F + + +RE N P+++
Sbjct: 463 SDDFLE----PDAVELCLDEFRKDLSLACVYTTNRNIDREGNLISNGYNWPIYSREKLTS 518
Query: 89 --MAGGLFSIDKAFFEKLGTYDSGF------DIWGGENLELSFKFNWHAIPE 132
+ + ++ D++ L+LS + I +
Sbjct: 519 AMICHHFRMFTARAWNLTEGFNESISNAVDYDMY----LKLSEVGPFKHINK 566
>1ybi_A HA33A, HA33/A, non-toxin haemagglutinin HA34; beta-trefoil; 1.50A
{Clostridium botulinum}
Length = 288
Score = 34.0 bits (77), Expect = 0.047
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 17/91 (18%)
Query: 209 YLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGE------IRRDEA- 261
+ N + + V Q+W+++ + I
Sbjct: 195 AYQFFNTILSNGVLTWIFSNGNTVRVSSSNDQ-NNDAQYWLINPVSDTDETYTITNLRDT 253
Query: 262 --CLDYAGGD------VILYPCHGSKGNQYF 284
LD GG + ++ HG NQ +
Sbjct: 254 TKALDLYGGQTANGTAIQVFNYHGDD-NQKW 283
>2vse_A MTX holotoxin, mosquitocidal toxin; ADP-ribosyltransferase, lectin,
ricin-B-like domain; 2.5A {Lysinibacillus sphaericus}
PDB: 2vsa_A
Length = 841
Score = 31.1 bits (69), Expect = 0.43
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 209 YLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGE-------IRRDEA 261
L+ S + + + + +Q+W++ ++ + +
Sbjct: 461 ILKAYKIKSLKYPNYSLAWDSNNTRTIVAATGD-YNDQYWLIERNEDNTYIIRNYENRKI 519
Query: 262 CLDYAGGD------VILYPCHGSKGNQYF 284
LD + G ++ + HG NQ +
Sbjct: 520 VLDLSNGSTTDGNGLLGFEFHGG-INQRW 547
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 30.6 bits (68), Expect = 0.51
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 16/112 (14%)
Query: 33 ICDDTFELRFPPGRLTSSYKFFIGGFDWNLQFNWH---AIPERER--------KRHKNAA 81
+ + + F +L + F + IP + RH + A
Sbjct: 102 VINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVA 161
Query: 82 EPVWT-----PTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENLELSFKFNWH 128
+ GG+ ++ K F + + + + WGGE+ ++ + +
Sbjct: 162 MDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFR 213
Score = 30.2 bits (67), Expect = 0.73
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 124 KFNWHAIPERERKRHKNAAEP---VWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENL 180
N + + R + + GG+ ++ K F + + + + WGGE+
Sbjct: 145 DHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDD 204
Query: 181 EL 182
++
Sbjct: 205 DI 206
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A
{Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A
1bug_A*
Length = 345
Score = 29.9 bits (66), Expect = 0.97
Identities = 36/234 (15%), Positives = 64/234 (27%), Gaps = 30/234 (12%)
Query: 65 NWHAIPERERKRHKNA-----AEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENL 119
H + + + A A P P + A+ + G+D +
Sbjct: 51 AAHTMDKDAIAKFAKAVELMKALPADDPRNFYQQALVHCAYC------NGGYDQVNFPDQ 104
Query: 120 ELSFKFNWHAIP------------ERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGT 167
E+ +W P + + P W GG+ D
Sbjct: 105 EIQVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLNDSTSSL 164
Query: 168 YDSGFDIWGGENL--ELSFKGDFGDVTSRKELRRNLGCKSFKWYLE--VSNDWSGMCIDS 223
YDS + + +L + G DVT ++ + NL + + + G +
Sbjct: 165 YDSNRNQSHLPPVVVDLGYNGADTDVTDQQRITDNLALMYKQMVTNAGTAELFLGKAYRA 224
Query: 224 ACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLDYAGGDVILYPCHG 277
P+ + H W+ D AG D+ Y H
Sbjct: 225 GDAPSPGAGSIE-TSPHIPIHR--WVGDPRNTNNEDMGNFYSAGRDIAFYCHHS 275
>1dqg_A Mannose receptor; beta trefoil, multilectin receptor, pituitary
hormones, sulfated carbohydrate, sugar binding protein;
1.70A {Mus musculus} SCOP: b.42.2.2 PDB: 1dqo_A* 1fwu_A*
1fwv_A*
Length = 135
Score = 28.5 bits (63), Expect = 1.5
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 11/80 (13%)
Query: 214 NDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--RDEACLD----YAG 267
N+ C+D+ V C+ + +Q + +I + CL
Sbjct: 10 NEDHKRCVDALSA-----ISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDW 64
Query: 268 GDVILYPCHGSKGNQYFEYD 287
V LY C Q +E
Sbjct: 65 ASVTLYACDSKSEYQKWECK 84
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 28.6 bits (63), Expect = 2.2
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 60 WNLQFNWHAIPERERKRHKNAAEPVWT---PTMAGGLFSIDKAFFEKLGTYDSGFDIWGG 116
+ P H + GG+ + + F+++ + + WG
Sbjct: 126 PLNDNLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGL 185
Query: 117 ENLELSFKFNWH 128
E+ E +
Sbjct: 186 EDDEFFVRIRDA 197
Score = 27.5 bits (60), Expect = 5.5
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 123 FKFNWHAIPERERKRHKNAAEPVWT---PTMAGGLFSIDKAFFEKLGTYDSGFDIWGGEN 179
+ P H + GG+ + + F+++ + + WG E+
Sbjct: 128 NDNLLYEYPSSLGPLHIAGPKLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLED 187
Query: 180 LELSFK 185
E +
Sbjct: 188 DEFFVR 193
>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A
{Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A*
2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A
Length = 286
Score = 27.5 bits (60), Expect = 5.7
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 20/94 (21%)
Query: 207 KWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGE------IRRDE 260
K + + + + + V Y Q+W ++ + +
Sbjct: 194 KSAYTLKCQENNRYLTWI---QNSNNYVETYQSTD-SLIQYWNINYLDNDASKYILYNLQ 249
Query: 261 A---CLDYAGGD------VILYPCHGSKGNQYFE 285
LD VI+ HG+ NQ +
Sbjct: 250 DTNRVLDVYNSQIANGTHVIVDSYHGNT-NQQWI 282
>1gbs_A Australian black SWAN egg white lysozyme; hydrolase (O-glycosyl);
1.50A {Cygnus atratus} SCOP: d.2.1.5 PDB: 1lsp_A* 153l_A
154l_A*
Length = 185
Score = 26.3 bits (58), Expect = 9.4
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 57 GFDWNLQFNWHAIPERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGG 116
+ + I RE K GL +DK + GT++ I G
Sbjct: 60 CVEPAV---IAGIISRESHAGKVLKNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQG 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.474
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,754,032
Number of extensions: 281792
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 72
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)