RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3380
(290 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 104 bits (260), Expect = 9e-27
Identities = 81/214 (37%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 4 CEVQKRWLQPLLDVLARNSSHVVSPLIANICDDTFELRFPPGRLTSSYKFFIGGFDWNLQ 63
CE WL+PLL + + VV P+I I DDTFE + GGF+W L
Sbjct: 118 CECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYM-------AGSDMTYGGFNWKLN 170
Query: 64 FNWHAIPERERKRHKN-AAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENLELS 122
F W+ +P+RE R K PV TPTMAGGLFSID+ +F+++GTYD+G DIWGGENLE+S
Sbjct: 171 FRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEIS 230
Query: 123 FKFNWHA-----IPERERKRHKNAAEPVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGG 177
F+ + A P P G + + + ++ D + +
Sbjct: 231 FRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVW-MDEFKNFFYI 289
Query: 178 ENLELSFKGDFGDVTSRKELRRNLGCKSFKWYLE 211
+ ++ D+GD++SR LRR L CK F WYLE
Sbjct: 290 ISPGVTKV-DYGDISSRLGLRRKLQCKPFSWYLE 322
Score = 53.4 bits (127), Expect = 7e-09
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 10/162 (6%)
Query: 33 ICDDTFELRFPPGRLTSSYKFFIGGFDWNLQFNWHAIPERERKRHKNAAEPVWTPTMAGG 92
+ + P + + W +
Sbjct: 72 PLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR 131
Query: 93 L---------FSIDKAFFEKLGTYDSGFDIWGGENLELSFKFNWHAIPERERKRHKNAAE 143
+ ID + +GG N +L+F++ E +R R +
Sbjct: 132 IKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDR-RKGDRTL 190
Query: 144 PVWTPTMAGGLFSIDKAFFEKLGTYDSGFDIWGGENLELSFK 185
PV TPTMAGGLFSID+ +F+++GTYD+G DIWGGENLE+SF+
Sbjct: 191 PVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFR 232
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 60.3 bits (145), Expect = 4e-12
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLDYAG--G 268
E+ N + C+D+ ++ VG++ CH GGNQ + + + EIR D+ CLD + G
Sbjct: 11 EIRNVETNQCLDNM--ARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNG 68
Query: 269 DVILYPCHGSKGNQYFEYDYKY 290
V + CH KGNQ +EYD
Sbjct: 69 PVTMLKCHHLKGNQLWEYDPVK 90
>d1abrb1 b.42.2.1 (B:1-140) Plant cytotoxin B-chain (lectin) {Abrus
precatorius [TaxId: 3816]}
Length = 140
Score = 53.8 bits (128), Expect = 9e-10
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGG-NQFWMMSKHGEIRRDEACLDYA----GGDV 270
GMC+D + ++ C + NQ W + IR + CL G V
Sbjct: 21 RDGMCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNGKCLTTYGYAPGSYV 80
Query: 271 ILYPCHGSKGNQYFEYD 287
++Y C + +
Sbjct: 81 MIYDCTSAVAEATYWEI 97
Score = 31.8 bits (71), Expect = 0.044
Identities = 7/84 (8%), Positives = 13/84 (15%), Gaps = 8/84 (9%)
Query: 206 FKWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI---RRDEAC 262
W L+ V +Y C + +
Sbjct: 52 QLWTLKSDKTIRSNGKCLTTYGYAPGSYVMIYDCTSAVAEATYWEIWDNGTIINPKSALV 111
Query: 263 LDYAGGD----VILYPCHGSKGNQ 282
L + + Q
Sbjct: 112 LSAESSSMGGTLTVQTNEYLM-RQ 134
>d1ggpb1 b.42.2.1 (B:11-140) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 126
Score = 52.1 bits (124), Expect = 3e-09
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLD---YAGGDVIL 272
G C D + + + L C + NQ W + + IR + CL +
Sbjct: 11 RDGFCADVNGEGQN-GAAIILKKCA-ENDNQLWTLKREATIRSNGGCLTTAAAEQAKAGI 68
Query: 273 YPCHGSKGNQYFEYDY 288
Y C + + ++
Sbjct: 69 YDCTQA-TAELSAWEI 83
Score = 30.2 bits (67), Expect = 0.12
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 9/42 (21%)
Query: 254 GEIR---RDEACLDYAGGD-----VILYPCHGSKGNQYFEYD 287
+R RD C D G +IL C + NQ +
Sbjct: 4 ATVRIAGRDGFCADVNGEGQNGAAIILKKCAEN-DNQLWTLK 44
>d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13
(Endo-1,4-beta-xylanase C-terminal domain) {Streptomyces
lividans [TaxId: 1916]}
Length = 129
Score = 52.2 bits (124), Expect = 3e-09
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLD----YA 266
++ SG C+D T + L+ CH Q+ + CLD
Sbjct: 7 QIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSN 66
Query: 267 GGDVILYPCHGSKGNQY 283
G V +Y C G ++
Sbjct: 67 GSKVQIYSCWGGDNQKW 83
Score = 26.1 bits (56), Expect = 3.2
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 6/35 (17%)
Query: 262 CLDYAGGD------VILYPCHGSKGNQYFEYDYKY 290
CLD + L+ CH Q+ D
Sbjct: 16 CLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGE 50
>d1rzob1 b.42.2.1 (B:2001-2135) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 135
Score = 50.6 bits (120), Expect = 1e-08
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGG-NQFWMMSKHGEIRRDEACLDYAGGD----- 269
+G+C+D + P+ L+PC NQ W + K IR + CL +
Sbjct: 16 RNGLCVDVTGEEFFDGNPIQLWPCKSNTDWNQLWTLRKDSTIRSNGKCLTISKSSPRQQV 75
Query: 270 -VILYPCHGSKGNQY 283
+ ++
Sbjct: 76 VIYNCSTATVGATRW 90
Score = 31.3 bits (70), Expect = 0.060
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 7/76 (9%)
Query: 213 SNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI--RRDEACLDYAGGD- 269
+ +G C+ + + G + W + + I R L G+
Sbjct: 56 TIRSNGKCLTISKSSPRQQVVIYNCSTATVGATR-WQIWDNRTIINPRSGLVLAATSGNS 114
Query: 270 ---VILYPCHGSKGNQ 282
+ + +
Sbjct: 115 GTKLTVQTNIYAVSQG 130
Score = 26.7 bits (58), Expect = 1.9
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 262 CLDYAGGD------VILYPCHGSKGNQYFEYDY 288
C+D G + + L+PC + + +
Sbjct: 20 CVDVTGEEFFDGNPIQLWPCKSN-TDWNQLWTL 51
>d1m2tb1 b.42.2.1 (B:249-384) Plant cytotoxin B-chain (lectin)
{European mistletoe (Viscum album) [TaxId: 3972]}
Length = 136
Score = 50.2 bits (119), Expect = 2e-08
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGG-NQFWMMSKHGEIRRDEACLDYAGG----DV 270
+GM +D + L+P NQ W + K G IR + +CL G V
Sbjct: 16 RNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYTAGVYV 75
Query: 271 ILYPCHGSKGNQYFEYDYKY 290
+++ C+ + + +
Sbjct: 76 MIFDCNTA-VREATIWQIWG 94
>d2zqna1 b.42.2.1 (A:131-260) 29-kDa galactose-binding lectin
{Lumbricus terrestris [TaxId: 6398]}
Length = 130
Score = 48.0 bits (113), Expect = 9e-08
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 209 YLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGG--NQFWMMSKHGEIR--RDEACLD 264
+ + ++ +G +D + + + K NQ W + G IR ++ +D
Sbjct: 3 FFYIKSELNGKVLDIEGQNPAPGSKIITWDQKKGPTAVNQLWYTDQQGVIRSKLNDFAID 62
Query: 265 YAGGDVILYPCHGSKGNQYFEYD 287
+ + P + + +
Sbjct: 63 ASHEQIETQPFDPNNPKRAWIVS 85
>d2aaib2 b.42.2.1 (B:136-262) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 127
Score = 48.0 bits (113), Expect = 1e-07
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA---CLDYA----GG 268
G+C+ + V + C + Q W + G IR + CL
Sbjct: 12 LYGLCLQA------NSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRET 65
Query: 269 DVILYPCHGSKGNQYFEYDYKY 290
V + C + Q + +
Sbjct: 66 VVKILSCGPASSGQRWMFKNDG 87
Score = 34.1 bits (77), Expect = 0.006
Identities = 18/73 (24%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI--RRDEACLDYAGGD----- 269
V + C Q WM G I LD D
Sbjct: 50 QNRDNCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVLDVRASDPSLKQ 109
Query: 270 VILYPCHGSKGNQ 282
+ILYP HG NQ
Sbjct: 110 IILYPLHGDP-NQ 121
>d1abrb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Abrus precatorius [TaxId: 3816]}
Length = 127
Score = 44.5 bits (104), Expect = 1e-06
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRD---EACLDYA----GG 268
+S +C+ + V + C Q W + G IR CL G
Sbjct: 12 YSDLCMQA------QGSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNNCLTSKDHKQGS 65
Query: 269 DVILYPCHGSKGNQYFEYDYKY 290
++L C +Q + +
Sbjct: 66 TILLMGCSNGWASQRWVFKNDG 87
Score = 33.4 bits (75), Expect = 0.010
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 213 SNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI--RRDEACLDYAGGD- 269
S + C+ S + L C +Q W+ G I D+ +D G D
Sbjct: 48 SVQNTNNCLTSK--DHKQGSTILLMGCSNGWASQRWVFKNDGSIYSLYDDMVMDVKGSDP 105
Query: 270 ----VILYPCHGSKGNQ 282
+IL+P G NQ
Sbjct: 106 SLKQIILWPYTGK-PNQ 121
>d1hwmb2 b.42.2.1 (B:136-266) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 131
Score = 44.5 bits (104), Expect = 2e-06
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA-CLDYA------GG 268
++ MC+ + + V + C Q W + IR + + L
Sbjct: 12 YNEMCLQANGENN----NVWMEDCDVTSVQQQWALFDDRTIRVNNSRGLCVTSNGYVSKD 67
Query: 269 DVILYPCHGSKGNQYFEYDYKY 290
+++ C G ++F
Sbjct: 68 LIVIRKCQGLATQRWFFNSDGS 89
Score = 31.4 bits (70), Expect = 0.053
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI-RRDEACLDYAGGD-----V 270
+ + + + C +++ S + + +D D V
Sbjct: 52 NSRGLCVTSNGYVSKDLIVIRKCQGLATQRWFFNSDGSVVNLKSTRVMDVKESDVSLQEV 111
Query: 271 ILYPCHGSKGNQ 282
I++P G+ NQ
Sbjct: 112 IIFPATGNP-NQ 122
>d1hwmb1 b.42.2.1 (B:3-135) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 133
Score = 44.1 bits (103), Expect = 2e-06
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 216 WSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLDYAGGD----VI 271
G+C+D P+ L+PC NQ W IR C+ G + ++
Sbjct: 16 RDGLCVDVRNGYDTDGTPIQLWPCG-TQRNQQWTFYNDKTIRSMGKCMTANGLNSGSYIM 74
Query: 272 LYPCHGSKG-NQYFEYDY 288
+ C + +E
Sbjct: 75 ITDCSTAAEDATKWEVLI 92
>d1ggpb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 128
Score = 41.4 bits (96), Expect = 2e-05
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR---RDEACLDYA----GGD 269
+ +C+ + + + + C Q W + IR + CL A
Sbjct: 13 AQLCMQA----GNGPANLWMSECRAGKAEQQWALLTDKSIRSETNSDNCLTSAADAGPKT 68
Query: 270 VILYPCHGSKGNQY 283
++L C G ++
Sbjct: 69 ILLALCSGPASQRW 82
Score = 32.5 bits (73), Expect = 0.020
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 258 RDEACLDYAGGD--VILYPCHGSKGNQYFEYDY 288
+ C+ G + + C K Q +
Sbjct: 12 SAQLCMQAGNGPANLWMSECRAGKAEQQWALLT 44
Score = 27.5 bits (60), Expect = 1.0
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 213 SNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI--RRDEACLDYAGGD- 269
S S C+ K + L +Q W+ G I D+ +D G
Sbjct: 50 SETNSDNCLT--SAADAGPKTILLA-LCSGPASQRWVFDDDGSILSLYDDKQMDSEGAAA 106
Query: 270 ----VILYPCHGSKGNQ 282
+IL+ NQ
Sbjct: 107 AAKQIILWWNAAEP-NQ 122
>d1vcla1 b.42.2.1 (A:1-150) Hemolytic lectin CEL-III, domains 1 and
2 {Cucumaria echinata [TaxId: 40245]}
Length = 150
Score = 41.4 bits (96), Expect = 3e-05
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 9/84 (10%)
Query: 211 EVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWM-MSKHGEIRRDEACLDYAG-- 267
E+ + S C+D + Y C Q + C G
Sbjct: 12 ELRSFKSKQCVDIVGNQGS--GNIATYDCDGLSDQQIIICGDGTIRNEARNYCFTPDGSG 69
Query: 268 -GDVILYPCH---GSKGNQYFEYD 287
+V+ PC +Q +
Sbjct: 70 NANVMSSPCTLYPEIPSSQRWRQG 93
Score = 33.7 bits (76), Expect = 0.011
Identities = 17/106 (16%), Positives = 25/106 (23%), Gaps = 26/106 (24%)
Query: 206 FKWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQ---GGNQFWMMSKHGEI------ 256
+ N+ C V PC +Q W +
Sbjct: 48 ICGDGTIRNEARNYCFTPDGSGN---ANVMSSPCTLYPEIPSSQRWRQGRRKTFTDNGGI 104
Query: 257 ---------RRDEACLDYAGGD----VILYPCHGSKGNQYFEYDYK 289
CLD G D + +Y C +QYF +
Sbjct: 105 EQVATEIINLASGKCLDIEGSDGTGDIGVYDCQNLD-DQYFYVRSR 149
>d1m2tb2 b.42.2.1 (B:385-510) Plant cytotoxin B-chain (lectin)
{European mistletoe (Viscum album) [TaxId: 3972]}
Length = 126
Score = 39.8 bits (92), Expect = 6e-05
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 217 SGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEA---CLDY----AGGD 269
+C++SA V + C NQ W + G IR + CL
Sbjct: 12 RDLCMESA------GGSVYVETCTAGQENQRWALYGDGSIRPKQLQSQCLTNGRDSISTV 65
Query: 270 VILYPCHGSKGNQYFEYDYKY 290
+ + C Q + + +
Sbjct: 66 INIVSCSAGSSGQRWVFTNEG 86
Score = 37.5 bits (86), Expect = 4e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 258 RDEACLDYAGGDVILYPCHGSKGNQYFEYD 287
+ C++ AGG V + C + NQ +
Sbjct: 11 FRDLCMESAGGSVYVETCTAGQENQRWALY 40
Score = 34.4 bits (78), Expect = 0.005
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 213 SNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--RDEACLDYAGGD- 269
C+ + + + C Q W+ + G I ++ +D A +
Sbjct: 47 PKQLQSQCLT--NGRDSISTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANP 104
Query: 270 ----VILYPCHGSKGNQ 282
+I+YP G+ NQ
Sbjct: 105 SLQRIIIYPATGNP-NQ 120
>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1
and 2 {Cucumaria echinata [TaxId: 40245]}
Length = 133
Score = 36.5 bits (83), Expect = 0.001
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 209 YLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRD-----EACL 263
Y + N+ S +C+D +D V +Y C F + +
Sbjct: 5 YGRLRNEKSDLCLDVE--GSDGKGNVLMYSCEDNLDQWFRYYENGEIVNAKSGMCLDVEG 62
Query: 264 DYAGGDVILYPCHGSKGNQYFEYDYKY 290
G+V +Y C + + +
Sbjct: 63 SDGSGNVGIYRCDDLRDQMWSRPNAYC 89
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 271
Score = 30.0 bits (67), Expect = 0.27
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 91 GGLFSIDKAFFEKLGTYDSGFDIWGGENLELSFKFNWH 128
GG+ ++ K F + + + + GGE+ ++ + +
Sbjct: 160 GGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFR 197
Score = 29.2 bits (65), Expect = 0.52
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 152 GGLFSIDKAFFEKLGTYDSGFDIWGGENLELSFK 185
GG+ ++ K F + + + + GGE+ ++ +
Sbjct: 160 GGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNR 193
>d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 134
Score = 27.5 bits (60), Expect = 1.1
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 214 NDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIR--RDEACLDYAGGD-- 269
+ +C+ V LY C + Q W E +Y
Sbjct: 48 SVAFKLCLG--VPSKTDWASVTLYACDSKSEYQKWECKNDTLFGIKGTELYFNYGNRQEK 105
Query: 270 -VILYPCHGS 278
+ LY G
Sbjct: 106 NIKLYKGSGL 115
>d1qxma2 b.42.2.1 (A:149-286) Hemagglutinin component Ha1
{Clostridium botulinum D phage [TaxId: 29342]}
Length = 138
Score = 26.6 bits (58), Expect = 2.5
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 20/93 (21%)
Query: 207 KWYLEVSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEI---------R 257
K + + + + + V Y Q+W ++ +
Sbjct: 46 KSAYTLKCQENNRYLTWI---QNSNNYVETYQST-DSLIQYWNINYLDNDASKYILYNLQ 101
Query: 258 RDEACLDYAGGD------VILYPCHGSKGNQYF 284
LD VI+ HG+ NQ +
Sbjct: 102 DTNRVLDVYNSQIANGTHVIVDSYHGNT-NQQW 133
>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal
domain {Horseshoe crab (Limulus polyphemus) [TaxId:
6850]}
Length = 249
Score = 26.0 bits (57), Expect = 5.1
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 156 SIDKAFFEKLGTYDSGFDIWGGENLELSFKGDFGDVTSRKELRRNLGCKSFKWYLEVSND 215
++ + T+ ++ EL + G+ S K +L + F + + V N+
Sbjct: 18 TLHARVDNVVHTFMREQEL------ELKHGINPGNARSIKARYYHLDHEPFSYAVNVQNN 71
>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli
[TaxId: 562]}
Length = 161
Score = 25.0 bits (54), Expect = 7.8
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 14/64 (21%)
Query: 227 PTDMHKPVGLYPCHKQGGNQFWMMSKH--------------GEIRRDEACLDYAGGDVIL 272
+ H GL P G F++ G ++ GD++L
Sbjct: 8 SFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILL 67
Query: 273 YPCH 276
+P
Sbjct: 68 FPPG 71
>d1nxja_ c.8.7.1 (A:) Hypothetical protein Rv3853 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 156
Score = 24.9 bits (54), Expect = 8.2
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 212 VSNDWSGMCIDSACKPTDMHKPVGLYPCHKQGGNQFWMMSKHGEIRRDEACLDYAGGDVI 271
S W+G+ + A + + + + + + GE + G V
Sbjct: 85 RSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITL-----GGVT 139
Query: 272 LYP 274
P
Sbjct: 140 FVP 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.474
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,229,287
Number of extensions: 59258
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 52
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)