BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3381
         (97 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
           Acetylgalactosaminyltransferase-T1
          Length = 472

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 45  GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
           GWLEPLL RI  D  TVV P+I++I DD F   +     +  GGF+W L  R
Sbjct: 130 GWLEPLLARIKHDRRTVVCPIIDVISDDTF--EYMAGSDMTYGGFNWKLNFR 179



 Score = 33.1 bits (74), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 1   MDRIARDSSAVVCPVIDVLDDSSLEF 26
           + RI  D   VVCP+IDV+ D + E+
Sbjct: 136 LARIKHDRRTVVCPIIDVISDDTFEY 161


>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
           And Ea2
 pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
 pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
          Length = 501

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 46  WLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSL 93
           WLEPLL+R+A D + VVSP+I++I  D+F  ++        GGF W+L
Sbjct: 163 WLEPLLERVAEDRTRVVSPIIDVINMDNF--QYVGASADLKGGFDWNL 208



 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 19/26 (73%)

Query: 1   MDRIARDSSAVVCPVIDVLDDSSLEF 26
           ++R+A D + VV P+IDV++  + ++
Sbjct: 168 LERVAEDRTRVVSPIIDVINMDNFQY 193


>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSL 93
           V WL PLLDRIAR+  T+V P+I++I  DDF         ++ G F W +
Sbjct: 211 VNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMR-GAFDWEM 259



 Score = 34.7 bits (78), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 1   MDRIARDSSAVVCPVIDVLDDSSLEF 26
           +DRIAR+   +VCP+IDV+D     +
Sbjct: 218 LDRIARNRKTIVCPMIDVIDHDDFRY 243


>pdb|1EU8|A Chain A, Structure Of Trehalose Maltose Binding Protein From
           Thermococcus Litoralis
          Length = 409

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 42  IGVGWLEPLLDRIARDN---STVVSPVIELIRDDDFALRFCRPQFIQIG 87
           I  GWLEPL D + +DN   S     VI L  D      +  P +I  G
Sbjct: 77  IASGWLEPLDDYVQKDNYDLSVFFQSVINLA-DKQGGKLYALPVYIDAG 124


>pdb|3G8R|A Chain A, Crystal Structure Of Putative Spore Coat Polysaccharide
           Biosynthesis Protein E From Chromobacterium Violaceum
           Atcc 12472
 pdb|3G8R|B Chain B, Crystal Structure Of Putative Spore Coat Polysaccharide
           Biosynthesis Protein E From Chromobacterium Violaceum
           Atcc 12472
          Length = 350

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 19  LDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDD 72
            D+ S++        I+K A +C    W  PLL+RIAR +  VV+      R+D
Sbjct: 99  FDEESVDLIEAHGIEIIKIA-SCSFTDW--PLLERIARSDKPVVASTAGARRED 149


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,839,363
Number of Sequences: 62578
Number of extensions: 100821
Number of successful extensions: 239
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 9
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)