Query psy3381
Match_columns 97
No_of_seqs 114 out of 792
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3736|consensus 100.0 3E-29 6.4E-34 200.5 4.4 94 1-97 248-351 (578)
2 KOG3738|consensus 99.9 5.3E-29 1.2E-33 192.3 3.0 93 1-96 226-328 (559)
3 KOG3737|consensus 99.9 3.7E-22 8E-27 154.6 5.1 96 1-97 262-369 (603)
4 KOG3736|consensus 99.6 1.5E-16 3.2E-21 127.9 3.4 92 3-96 165-291 (578)
5 KOG3738|consensus 99.5 7.7E-16 1.7E-20 119.7 0.5 90 4-96 148-269 (559)
6 KOG3737|consensus 99.0 5.3E-11 1.2E-15 93.0 -0.1 94 3-96 178-309 (603)
7 cd02510 pp-GalNAc-T pp-GalNAc- 98.5 3.9E-08 8.4E-13 72.3 1.0 92 2-96 106-206 (299)
8 PF10111 Glyco_tranf_2_2: Glyc 93.0 0.0099 2.2E-07 43.7 -2.4 32 65-96 171-203 (281)
9 cd02510 pp-GalNAc-T pp-GalNAc- 92.8 0.087 1.9E-06 38.6 2.3 52 42-95 96-147 (299)
10 PF02709 Glyco_transf_7C: N-te 92.4 0.0048 1E-07 37.9 -4.0 31 66-96 23-54 (78)
11 cd00899 b4GalT Beta-4-Galactos 82.5 0.15 3.2E-06 37.2 -2.3 29 68-96 117-146 (219)
12 PF12101 DUF3577: Protein of u 66.0 7.8 0.00017 26.4 2.9 44 2-47 72-119 (137)
13 cd06420 GT2_Chondriotin_Pol_N 55.2 1.3 2.8E-05 29.2 -2.4 29 68-96 132-161 (182)
14 PF03438 Pneumo_NS1: Pneumovir 39.1 12 0.00025 24.8 0.3 31 12-42 65-95 (136)
15 COG4092 Predicted glycosyltran 38.1 6.3 0.00014 30.2 -1.2 28 66-93 181-209 (346)
16 cd04184 GT2_RfbC_Mx_like Myxoc 30.6 6.7 0.00014 26.2 -2.0 27 68-96 155-182 (202)
17 KOG3588|consensus 24.1 17 0.00037 29.2 -0.9 26 68-93 389-415 (494)
No 1
>KOG3736|consensus
Probab=99.95 E-value=3e-29 Score=200.48 Aligned_cols=94 Identities=29% Similarity=0.425 Sum_probs=81.7
Q ss_pred CcccccCCCeEEeceEEEEeCCCceEEec--CCcceEecccceeeeeecc-chhhhhh-cC-CCeEecceee----eEcc
Q psy3381 1 MDRIARDSSAVVCPVIDVLDDSSLEFHFR--DSTGILKEALACIGVGWLE-PLLDRIA-RD-NSTVVSPVIE----LIRD 71 (97)
Q Consensus 1 l~ri~~~~~~vv~PvID~Id~~tf~~~~~--~~~G~f~w~l~~~~~~Wl~-pll~ri~-~~-~~~i~sP~i~----~Id~ 71 (97)
|+||++|+++|||||||+||.+||+|... ...|+|+|. ++|+|.. |+-...+ ++ ..||+||+|+ ||||
T Consensus 248 L~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~---l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r 324 (578)
T KOG3736|consen 248 LARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWE---LTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDR 324 (578)
T ss_pred HHHhhhcCceeecceEEeecCcCceecccCccceeeeecc---eeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeH
Confidence 68999999999999999999999999983 345999999 6699964 4433333 44 4689999999 9999
Q ss_pred cchhhhcc-CCCCceeEEEeeEEEEeC
Q psy3381 72 DDFALRFC-RPQFIQIGGFSWSLEVRS 97 (97)
Q Consensus 72 ~~F~~~g~-d~g~~~~Gg~nwelsfr~ 97 (97)
+||+++|+ |+||++|||||+|||||+
T Consensus 325 ~yF~eiG~yD~gMdiwGGENlElSfrv 351 (578)
T KOG3736|consen 325 KYFGELGSYDEGMDIWGGENLELSFRV 351 (578)
T ss_pred HHHhhccCccccccccChhhceeeEEE
Confidence 99999998 999999999999999984
No 2
>KOG3738|consensus
Probab=99.95 E-value=5.3e-29 Score=192.32 Aligned_cols=93 Identities=22% Similarity=0.322 Sum_probs=82.4
Q ss_pred CcccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeecc--chhhhhhcCCC-eEecceee----eEcc
Q psy3381 1 MDRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLE--PLLDRIARDNS-TVVSPVIE----LIRD 71 (97)
Q Consensus 1 l~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~--pll~ri~~~~~-~i~sP~i~----~Id~ 71 (97)
|+|+|||+++||||+||+||.+||.|..+.+ .|+|||+ ++|+|.. |....-+.+|+ ||+||+|+ +||+
T Consensus 226 L~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWs---LhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk 302 (559)
T KOG3738|consen 226 LERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWS---LHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDK 302 (559)
T ss_pred HHHHhhcccceeecccccccccccccccchhhhcCCcceE---EEEEehhcCHHHHhhccCCCCcccCccccceeEEecH
Confidence 6899999999999999999999999998655 4999999 7799964 44444445665 79999999 9999
Q ss_pred cchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 72 DDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 72 ~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
.+|.++|. |+.|++|||||+|||||
T Consensus 303 ~wF~~LGkyd~~mdiWGGEn~Elsfr 328 (559)
T KOG3738|consen 303 EWFNELGKYDMDMDIWGGENLELSFR 328 (559)
T ss_pred HHHHHhcccCccccccCCcceEEEEE
Confidence 99999998 99999999999999998
No 3
>KOG3737|consensus
Probab=99.85 E-value=3.7e-22 Score=154.64 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=80.5
Q ss_pred CcccccCCCeEEeceEEEEeCCCceEEec---CC---cceEecccceeeeeeccchhh-hhhcCCCeEecceee----eE
Q psy3381 1 MDRIARDSSAVVCPVIDVLDDSSLEFHFR---DS---TGILKEALACIGVGWLEPLLD-RIARDNSTVVSPVIE----LI 69 (97)
Q Consensus 1 l~ri~~~~~~vv~PvID~Id~~tf~~~~~---~~---~G~f~w~l~~~~~~Wl~pll~-ri~~~~~~i~sP~i~----~I 69 (97)
|++|.+|+|.+.+|+||.||.+|+||.+. +. .|+|+|.+.. ...=++|.-. +.++|+.|++||+++ ||
T Consensus 262 lAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLy-Ke~~~t~rE~r~RkhnsePyRSPthAGGLfAI 340 (603)
T KOG3737|consen 262 LAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLY-KEVPLTPREKRLRKHNSEPYRSPTHAGGLFAI 340 (603)
T ss_pred ccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhhee-ccCCCCHHHHHhhhccCCCCCCcccccceeee
Confidence 68999999999999999999999999973 32 3999999762 1111223333 356788999999999 99
Q ss_pred cccchhhhcc-CCCCceeEEEeeEEEEeC
Q psy3381 70 RDDDFALRFC-RPQFIQIGGFSWSLEVRS 97 (97)
Q Consensus 70 d~~~F~~~g~-d~g~~~~Gg~nwelsfr~ 97 (97)
+|++|.++|. |+|+.+|||||+|||||+
T Consensus 341 nRe~F~ELG~YDpgLqiWGGEnfElSfKI 369 (603)
T KOG3737|consen 341 NREFFFELGLYDPGLQIWGGENFELSFKI 369 (603)
T ss_pred hHHHHHHhccCCCcceeecCcceeEEEEE
Confidence 9999999998 999999999999999995
No 4
>KOG3736|consensus
Probab=99.63 E-value=1.5e-16 Score=127.88 Aligned_cols=92 Identities=37% Similarity=0.612 Sum_probs=80.1
Q ss_pred ccccCCCeEEeceEEEEeCCCceEEe------------------cCCcceEecccc-----------------eeeeeec
Q psy3381 3 RIARDSSAVVCPVIDVLDDSSLEFHF------------------RDSTGILKEALA-----------------CIGVGWL 47 (97)
Q Consensus 3 ri~~~~~~vv~PvID~Id~~tf~~~~------------------~~~~G~f~w~l~-----------------~~~~~Wl 47 (97)
.|...|..++..+|-+.|.++.+|.. ..+.|++++++. |++.+||
T Consensus 165 vi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWL 244 (578)
T KOG3736|consen 165 VINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSKVRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWL 244 (578)
T ss_pred ehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcceeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcc
Confidence 46678889999999999999988832 234488887776 5999999
Q ss_pred cchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEEe
Q psy3381 48 EPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 48 ~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsfr 96 (97)
||+++||++++++|+||+||+||.++|+|... +...+|||||+|.|+
T Consensus 245 ePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~--~~~~rGgFdW~l~f~ 291 (578)
T KOG3736|consen 245 EPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQ--SELMRGGFDWELTFK 291 (578)
T ss_pred hHHHHHhhhcCceeecceEEeecCcCceeccc--CccceeeeecceeEE
Confidence 99999999999999999999999999999874 367899999999998
No 5
>KOG3738|consensus
Probab=99.55 E-value=7.7e-16 Score=119.71 Aligned_cols=90 Identities=33% Similarity=0.606 Sum_probs=72.1
Q ss_pred cccCCCeEEeceEEEEeCCCceEEe---------------cCCcceEeccc-----------------ceeeeeeccchh
Q psy3381 4 IARDSSAVVCPVIDVLDDSSLEFHF---------------RDSTGILKEAL-----------------ACIGVGWLEPLL 51 (97)
Q Consensus 4 i~~~~~~vv~PvID~Id~~tf~~~~---------------~~~~G~f~w~l-----------------~~~~~~Wl~pll 51 (97)
+.+.|..++..+|-|.|.+. +-.- ..+.|+++=+. +|||.+||||++
T Consensus 148 lnrsP~~li~EiILVDD~S~-Dped~~~L~ri~kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL 226 (559)
T KOG3738|consen 148 LNRSPEHLIHEIILVDDFSQ-DPEDGKLLKRIPKVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLL 226 (559)
T ss_pred HcCChHHhhheeEEecCCCC-ChHHHHHHhhhheeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHH
Confidence 45778888999999988766 2210 12225444322 259999999999
Q ss_pred hhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEEe
Q psy3381 52 DRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 52 ~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsfr 96 (97)
+|+++|++.|+||+||.||-++|.|+|. ..+.+|||+|.|.|+
T Consensus 227 ~Rvaed~trvVsPiiDvIn~dnf~Y~~a--sadLrGGFDWsLhF~ 269 (559)
T KOG3738|consen 227 ERVAEDTTRVVSPIIDVINLDNFSYVGA--SADLRGGFDWSLHFK 269 (559)
T ss_pred HHHhhcccceeecccccccccccccccc--hhhhcCCcceEEEEE
Confidence 9999999999999999999999999997 357899999999997
No 6
>KOG3737|consensus
Probab=99.01 E-value=5.3e-11 Score=93.04 Aligned_cols=94 Identities=23% Similarity=0.373 Sum_probs=76.6
Q ss_pred ccccCCCeEEeceEEEEeCCCceEEe-------------------cCCcceEecccc-----------------eeeeee
Q psy3381 3 RIARDSSAVVCPVIDVLDDSSLEFHF-------------------RDSTGILKEALA-----------------CIGVGW 46 (97)
Q Consensus 3 ri~~~~~~vv~PvID~Id~~tf~~~~-------------------~~~~G~f~w~l~-----------------~~~~~W 46 (97)
-|++.|+..+..|+-+.|.++-++.+ ..+.|+++++-. |++.+|
T Consensus 178 Vi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNW 257 (603)
T KOG3737|consen 178 VIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNW 257 (603)
T ss_pred HHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecchhhhhhhhhccchhhccccEEEEEecceeeeccc
Confidence 36789999999999999998887644 122366665544 499999
Q ss_pred ccchhhhhhcCCCeEecceeeeEcccchhhhc--cCCCCceeEEEeeEEEEe
Q psy3381 47 LEPLLDRIARDNSTVVSPVIELIRDDDFALRF--CRPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 47 l~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g--~d~g~~~~Gg~nwelsfr 96 (97)
|+|++++|..|+|....|+||.||.++|+|.. +.+....+|.|.|.|-+|
T Consensus 258 lpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyK 309 (603)
T KOG3737|consen 258 LPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYK 309 (603)
T ss_pred ccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheec
Confidence 99999999999999999999999999999975 222336799999999876
No 7
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.48 E-value=3.9e-08 Score=72.31 Aligned_cols=92 Identities=25% Similarity=0.368 Sum_probs=69.8
Q ss_pred cccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeeccchhhh--hhcCCCeEecceee----eEcccc
Q psy3381 2 DRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLEPLLDR--IARDNSTVVSPVIE----LIRDDD 73 (97)
Q Consensus 2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~pll~r--i~~~~~~i~sP~i~----~Id~~~ 73 (97)
+.+.++|..+++|.++.++.+++.|..... .|++.|.+ .+.|....... ......+..+|.+. +|.|+.
T Consensus 106 ~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 182 (299)
T cd02510 106 ARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSL---HFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREW 182 (299)
T ss_pred HHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccc---eeccccCCHHHhhhcCCCCCccCccccceeeEEEHHH
Confidence 346788999999999999999999976543 58899984 47776432222 12222345666653 899999
Q ss_pred hhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 74 FALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 74 F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
|..+|+ |+++..+|+|+.+|++|
T Consensus 183 ~~~vGgfDe~~~~~~~ED~Dl~~R 206 (299)
T cd02510 183 FLELGGYDEGMDIWGGENLELSFK 206 (299)
T ss_pred HHHhCCCCCcccccCchhHHHHHH
Confidence 999998 99999999999998776
No 8
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=92.97 E-value=0.0099 Score=43.73 Aligned_cols=32 Identities=22% Similarity=0.086 Sum_probs=28.2
Q ss_pred eeeeEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 65 VIELIRDDDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 65 ~i~~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
..-+|+|+.|..+|+ |+....||+|+.||.+|
T Consensus 171 ~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~R 203 (281)
T PF10111_consen 171 SCFLINREDFLEIGGFDERFRGWGYEDIDFGYR 203 (281)
T ss_pred eEEEEEHHHHHHhCCCCccccCCCcchHHHHHH
Confidence 444999999999999 99999999999998765
No 9
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.78 E-value=0.087 Score=38.59 Aligned_cols=52 Identities=50% Similarity=0.883 Sum_probs=42.0
Q ss_pred eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEE
Q psy3381 42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEV 95 (97)
Q Consensus 42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsf 95 (97)
+..+||+++++.+..++..+++|.+..++...+.+.+.. ....|+++|.+.+
T Consensus 96 ~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 147 (299)
T cd02510 96 VNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSS--GDARGGFDWSLHF 147 (299)
T ss_pred cCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCC--CceeEEeccccee
Confidence 689999999999999999999999999998888877651 2256777776654
No 10
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=92.43 E-value=0.0048 Score=37.91 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=25.1
Q ss_pred eeeEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 66 IELIRDDDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 66 i~~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
+-++.++.|..+++ |+.+..||||+.+|..|
T Consensus 23 ~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~R 54 (78)
T PF02709_consen 23 VFAISREDFEKVNGFDERFWGWGGEDDDLYNR 54 (78)
T ss_dssp EEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHH
T ss_pred EEEEeHHHHHHcCCCCccccccCccHHHHHHH
Confidence 44899999999998 99999999999887644
No 11
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=82.47 E-value=0.15 Score=37.24 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=26.0
Q ss_pred eEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 68 LIRDDDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 68 ~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
++.++.|..+++ |++...||||+.||+.|
T Consensus 117 ~~~k~~f~~VNGf~n~f~GWGgEDdd~~~R 146 (219)
T cd00899 117 ALTREQFRKVNGFSNAYWGWGGEDDDLYNR 146 (219)
T ss_pred eeEHHHHHHhCCcCCcCccCCcchHHHHHH
Confidence 899999999988 99999999999988644
No 12
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=65.97 E-value=7.8 Score=26.44 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=35.5
Q ss_pred cccccCCCeEEeceEEEEeCCCceEEecCCc----ceEecccceeeeeec
Q psy3381 2 DRIARDSSAVVCPVIDVLDDSSLEFHFRDST----GILKEALACIGVGWL 47 (97)
Q Consensus 2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~~~~----G~f~w~l~~~~~~Wl 47 (97)
+.+.++++.++...|-.+-.++|.|...... -.+.+||. ..+|+
T Consensus 72 ~av~~~~KVli~FrlgDl~~d~f~~~~G~~~Ge~g~sLKgRLl--~i~~i 119 (137)
T PF12101_consen 72 KAVDEDKKVLIGFRLGDLWADTFTYKKGERAGEPGASLKGRLL--KIKWI 119 (137)
T ss_pred hhcccCCcEEEEEEecCCceeeEEeccCCcCCccceeeEEEEE--EEEEE
Confidence 3467899999999999999999999875444 25788884 67786
No 13
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=55.21 E-value=1.3 Score=29.21 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=24.0
Q ss_pred eEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 68 LIRDDDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 68 ~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
++.|..|...|+ |+....||+|+++|++|
T Consensus 132 ~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r 161 (182)
T cd06420 132 SFWKKDLLAVNGFDEEFTGWGGEDSELVAR 161 (182)
T ss_pred EEEHHHHHHhCCCCcccccCCcchHHHHHH
Confidence 577888888888 88888899999988765
No 14
>PF03438 Pneumo_NS1: Pneumovirus NS1 protein; InterPro: IPR005099 This non-structural protein is one of two found in pneumoviruses. The protein is about 140 amino acids in length. The NS1 protein appears to be important for efficient replication but not essential []. The NS1 protein has been shown by yeast two-hybrid to interact with the viral P protein []. This protein is also known as the 1C protein. It has also been shown that NS1 can potently inhibit transcription and RNA replication [].
Probab=39.06 E-value=12 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=25.8
Q ss_pred EeceEEEEeCCCceEEecCCcceEeccccee
Q psy3381 12 VCPVIDVLDDSSLEFHFRDSTGILKEALACI 42 (97)
Q Consensus 12 v~PvID~Id~~tf~~~~~~~~G~f~w~l~~~ 42 (97)
.||-=|+|...+|.-++.-+-|++-|.+.|+
T Consensus 65 ~cp~~~ii~~~nfttmp~lqnggyiwel~el 95 (136)
T PF03438_consen 65 FCPTNNIIVSSNFTTMPILQNGGYIWELMEL 95 (136)
T ss_pred cCCCCCeEEeccccccceeccCceeeehhhh
Confidence 4888899999999877767779999998863
No 15
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=38.13 E-value=6.3 Score=30.24 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=25.0
Q ss_pred eeeEcccchhhhcc-CCCCceeEEEeeEE
Q psy3381 66 IELIRDDDFALRFC-RPQFIQIGGFSWSL 93 (97)
Q Consensus 66 i~~Id~~~F~~~g~-d~g~~~~Gg~nwel 93 (97)
+-.|++..|...|+ |+.....|.|++||
T Consensus 181 ~~liN~~~F~~tgGydE~F~GhG~EDfe~ 209 (346)
T COG4092 181 IFLINRRMFSLTGGYDERFRGHGSEDFEF 209 (346)
T ss_pred eEEEehhHHHHhcCCccccccCCchhHHH
Confidence 34899999999998 99999999999886
No 16
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=30.59 E-value=6.7 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=20.7
Q ss_pred eEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 68 LIRDDDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 68 ~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
.+.++.|..+|+ |++. .++++++|.+|
T Consensus 155 ~~~r~~~~~iggf~~~~--~~~eD~~l~~r 182 (202)
T cd04184 155 VYRRSLVRQVGGFREGF--EGAQDYDLVLR 182 (202)
T ss_pred eEEHHHHHHhCCCCcCc--ccchhHHHHHH
Confidence 578999999987 7653 37899887654
No 17
>KOG3588|consensus
Probab=24.10 E-value=17 Score=29.15 Aligned_cols=26 Identities=19% Similarity=0.025 Sum_probs=19.8
Q ss_pred eEcccchhhhcc-CCCCceeEEEeeEE
Q psy3381 68 LIRDDDFALRFC-RPQFIQIGGFSWSL 93 (97)
Q Consensus 68 ~Id~~~F~~~g~-d~g~~~~Gg~nwel 93 (97)
.+=|..|-.+|+ |.....||||+..|
T Consensus 389 c~yrsd~~~vgGFD~~I~GWG~EDV~L 415 (494)
T KOG3588|consen 389 CQYRSDFLTVGGFDMEIKGWGGEDVDL 415 (494)
T ss_pred EEeeccceeecCcceeeeccCcchHHH
Confidence 556677778888 88888899988654
Done!