Query psy3381
Match_columns 97
No_of_seqs 114 out of 792
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 23:35:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xhb_A Polypeptide N-acetylgal 98.7 3.8E-09 1.3E-13 80.5 1.0 92 2-96 137-239 (472)
2 2d7i_A Polypeptide N-acetylgal 98.6 4E-09 1.4E-13 83.0 -0.5 92 2-96 219-319 (570)
3 2ffu_A Ppgalnact-2, polypeptid 98.6 5.9E-09 2E-13 80.3 -0.4 92 2-96 169-271 (501)
4 1xhb_A Polypeptide N-acetylgal 94.6 0.016 5.6E-07 43.7 2.5 53 42-96 127-179 (472)
5 2ffu_A Ppgalnact-2, polypeptid 94.5 0.015 5.3E-07 44.3 2.0 52 42-95 159-210 (501)
6 2d7i_A Polypeptide N-acetylgal 91.9 0.075 2.6E-06 41.5 2.3 52 42-95 209-261 (570)
7 2fy7_A Beta-1,4-galactosyltran 68.4 0.22 7.5E-06 36.0 -3.6 30 67-96 179-209 (287)
8 2z86_A Chondroitin synthase; G 49.8 0.89 3E-05 35.2 -3.3 30 67-96 281-311 (625)
9 3lw6_A FI08434P, beta-4-galact 31.2 1.9 6.5E-05 31.7 -3.9 28 68-95 164-192 (287)
10 2rky_B Fibronectin-binding pro 13.9 72 0.0025 14.9 1.0 17 18-34 7-23 (26)
No 1
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.67 E-value=3.8e-09 Score=80.46 Aligned_cols=92 Identities=28% Similarity=0.433 Sum_probs=71.0
Q ss_pred cccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeecc--ch-hhhhhcC-CCeEecceee----eEcc
Q psy3381 2 DRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLE--PL-LDRIARD-NSTVVSPVIE----LIRD 71 (97)
Q Consensus 2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~--pl-l~ri~~~-~~~i~sP~i~----~Id~ 71 (97)
+.+++++..+++|.++.++.++++|..... .|+|+|.+ .+.|.. +. ..+...+ ..++.+|.+. +|.|
T Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr 213 (472)
T 1xhb_A 137 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKL---NFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDR 213 (472)
T ss_dssp HHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTC---CEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEH
T ss_pred HHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccc---eeecccCCHHHHhcccCCCCCcccCccccceeEEEEH
Confidence 456789999999999999999999976433 38999984 577753 21 1112222 3368888876 8999
Q ss_pred cchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 72 DDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 72 ~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
+.|+.+|+ |+++..||+|+++|++|
T Consensus 214 ~~~~~iGgfde~~~~~g~ED~dl~~R 239 (472)
T 1xhb_A 214 DYFQEIGTYDAGMDIWGGENLEISFR 239 (472)
T ss_dssp HHHHHTTSCCTTSCTTCCCCSHHHHH
T ss_pred HHHHHcCCCCCcccccCchhHHHHHH
Confidence 99999998 99999999999999876
No 2
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.60 E-value=4e-09 Score=83.04 Aligned_cols=92 Identities=23% Similarity=0.362 Sum_probs=72.3
Q ss_pred cccccCCCeEEeceEEEEeCCCceEEec-C--CcceEecccceeeeeeccchhh-hhhcCCCeEecceee----eEcccc
Q psy3381 2 DRIARDSSAVVCPVIDVLDDSSLEFHFR-D--STGILKEALACIGVGWLEPLLD-RIARDNSTVVSPVIE----LIRDDD 73 (97)
Q Consensus 2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~-~--~~G~f~w~l~~~~~~Wl~pll~-ri~~~~~~i~sP~i~----~Id~~~ 73 (97)
+++++++..+|+|.++.++.+++.|... . ..|.|+|.+ .++|++.... .......++.+|.+. +|.|+.
T Consensus 219 ~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 295 (570)
T 2d7i_A 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEM---YYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKW 295 (570)
T ss_dssp HHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTC---CEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccc---cccccccchhhhccCCCcceecccccceEEEEEHHH
Confidence 4577899999999999999999999763 2 238899994 4777653322 233334567888875 899999
Q ss_pred hhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 74 FALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 74 F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
|..+|+ |+++..||+|+++|++|
T Consensus 296 ~~~iGgfDe~~~~~g~ED~dl~~R 319 (570)
T 2d7i_A 296 FWELGGYDPGLEIWGGEQYEISFK 319 (570)
T ss_dssp HHHTTSSCTTCCSSSSHHHHHHHH
T ss_pred HHhcCCCCCcccccCcchHHHHHH
Confidence 999998 99999999999998876
No 3
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=98.57 E-value=5.9e-09 Score=80.26 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=70.9
Q ss_pred cccccCCCeEEeceEEEEeCCCceEEecCC--cceEecccceeeeeecc-chhh---hhhcCCCeEecceee----eEcc
Q psy3381 2 DRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLE-PLLD---RIARDNSTVVSPVIE----LIRD 71 (97)
Q Consensus 2 ~ri~~~~~~vv~PvID~Id~~tf~~~~~~~--~G~f~w~l~~~~~~Wl~-pll~---ri~~~~~~i~sP~i~----~Id~ 71 (97)
+++++++..+|+|+++.++.++|.|..... .|+|.|.+ .+.|.. +... +......++.+|.+. +|.|
T Consensus 169 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr 245 (501)
T 2ffu_A 169 ERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNL---VFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDK 245 (501)
T ss_dssp HHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTC---CEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEH
T ss_pred HHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecC---CCccccCCHHHHhhccCCCCCcccCccccceEEEEEH
Confidence 456788999999999999999999976443 38899984 467743 2211 111333468888875 9999
Q ss_pred cchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 72 DDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 72 ~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
+.|..+|+ |+++..||+|+++|++|
T Consensus 246 ~~~~~iGgfde~~~~~g~ED~dl~~R 271 (501)
T 2ffu_A 246 FYFEELGKYDMMMDVWGGENLEISFR 271 (501)
T ss_dssp HHHHHTTCCCTTCCSSSSHHHHHHHH
T ss_pred HHHHHhCCCCccccccCcchHHHHHH
Confidence 99999998 99999999999998765
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=94.64 E-value=0.016 Score=43.66 Aligned_cols=53 Identities=47% Similarity=0.884 Sum_probs=44.4
Q ss_pred eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEEe
Q psy3381 42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsfr 96 (97)
+..+||+++++.+..++..+++|.++.++.+.|++.+. +....|+++|.+.|+
T Consensus 127 ~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 179 (472)
T 1xhb_A 127 CTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAG--SDMTYGGFNWKLNFR 179 (472)
T ss_dssp ECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECC--CTTEEEEECTTCCEE
T ss_pred eCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccC--CCcccceeeccceee
Confidence 78899999999999999999999999999999988654 245688888866553
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=94.45 E-value=0.015 Score=44.33 Aligned_cols=52 Identities=42% Similarity=0.756 Sum_probs=43.9
Q ss_pred eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhccCCCCceeEEEeeEEEE
Q psy3381 42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEV 95 (97)
Q Consensus 42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~d~g~~~~Gg~nwelsf 95 (97)
+..+||+++++.+..++..+++|.++.|+.+.|.+.+. .....|+++|.+.|
T Consensus 159 ~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 210 (501)
T 2ffu_A 159 CNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGA--SADLKGGFDWNLVF 210 (501)
T ss_dssp ECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECB--CSSEEEEECTTCCE
T ss_pred cCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecC--CcccceEeeecCCC
Confidence 68899999999999998889999999999999998765 23467888887654
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=91.86 E-value=0.075 Score=41.54 Aligned_cols=52 Identities=42% Similarity=0.773 Sum_probs=43.1
Q ss_pred eeeeeccchhhhhhcCCCeEecceeeeEcccchhhhcc-CCCCceeEEEeeEEEE
Q psy3381 42 IGVGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFC-RPQFIQIGGFSWSLEV 95 (97)
Q Consensus 42 ~~~~Wl~pll~ri~~~~~~i~sP~i~~Id~~~F~~~g~-d~g~~~~Gg~nwelsf 95 (97)
+..+||+++++.+..++..+++|.++.++.+.|.+.+. . ....|+++|.+.+
T Consensus 209 ~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 261 (570)
T 2d7i_A 209 ANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAG--DAMRGAFDWEMYY 261 (570)
T ss_dssp ECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTT--SSCEEEECTTCCE
T ss_pred ccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccC--Ccccccccccccc
Confidence 68899999999999999999999999999999988663 2 2357888887654
No 7
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=68.40 E-value=0.22 Score=35.99 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=26.1
Q ss_pred eeEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 67 ELIRDDDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 67 ~~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
.++.++.|..+|+ |+.+..||+|+++|..|
T Consensus 179 ~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~R 209 (287)
T 2fy7_A 179 SALSKQQFLTINGFPNNYWGWGGEDDDIFNR 209 (287)
T ss_dssp EEEEHHHHHHTTSCCSCCSSCSCHHHHHHHH
T ss_pred EEEEHHHHHHcCCCCccccccccchHHHHHH
Confidence 4899999999998 99888899999988654
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=49.79 E-value=0.89 Score=35.24 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=26.3
Q ss_pred eeEcccchhhhcc-CCCCceeEEEeeEEEEe
Q psy3381 67 ELIRDDDFALRFC-RPQFIQIGGFSWSLEVR 96 (97)
Q Consensus 67 ~~Id~~~F~~~g~-d~g~~~~Gg~nwelsfr 96 (97)
.++.++.|..+|+ |+.+..||+|+++|++|
T Consensus 281 ~~~rr~~l~~iGgfde~~~~~g~ED~dl~~R 311 (625)
T 2z86_A 281 VAFAKKWLFRAGWFDEEFTHWGGEDNEFGYR 311 (625)
T ss_dssp EEEETHHHHHHCCCCTTCSSCCCHHHHHHHH
T ss_pred eeeEHHHHHHhCCCccccccCCcchhhhhhh
Confidence 4899999999998 99998899999988654
No 9
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=31.22 E-value=1.9 Score=31.71 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=24.1
Q ss_pred eEcccchhhhcc-CCCCceeEEEeeEEEE
Q psy3381 68 LIRDDDFALRFC-RPQFIQIGGFSWSLEV 95 (97)
Q Consensus 68 ~Id~~~F~~~g~-d~g~~~~Gg~nwelsf 95 (97)
++.++.|..+++ |.....||||+-+|..
T Consensus 164 a~~re~f~kVNGFsn~f~GWGgEDdD~~~ 192 (287)
T 3lw6_A 164 LVRREHFKQMNGMSNQYWGWGLEDDEFFV 192 (287)
T ss_dssp EEEHHHHHHTTSCCSCCCSSSSHHHHHHH
T ss_pred eccHHHHHHcCCCCCcCcCCCccchHHHH
Confidence 889999999998 9889999999876643
No 10
>2rky_B Fibronectin-binding protein; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 1.80A {Homo sapiens}
Probab=13.92 E-value=72 Score=14.94 Aligned_cols=17 Identities=6% Similarity=0.276 Sum_probs=10.1
Q ss_pred EEeCCCceEEecCCcce
Q psy3381 18 VLDDSSLEFHFRDSTGI 34 (97)
Q Consensus 18 ~Id~~tf~~~~~~~~G~ 34 (97)
+|+.++|+|......|.
T Consensus 7 iv~sN~fef~Edtgtg~ 23 (26)
T 2rky_B 7 IIQNNKFEYKEDTIKET 23 (26)
T ss_dssp EEEEEECEEEECCCC--
T ss_pred eEecCCeeEeecccccc
Confidence 46678889876544443
Done!