RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3381
         (97 letters)



>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
           mucin-type O-linked glycans.  UDP-GalNAc: polypeptide
           alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
           initiate the formation of mucin-type, O-linked glycans
           by catalyzing the transfer of
           alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
           hydroxyl groups of Ser or Thr residues of core proteins
           to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
           enzymes are type II membrane proteins with a GT-A type
           catalytic domain and a lectin domain located on the
           lumen side of the Golgi apparatus. In human, there are
           15 isozymes of pp-GalNAc-Ts, representing the largest of
           all glycosyltransferase families. Each isozyme has
           unique but partially redundant substrate specificity for
           glycosylation sites on acceptor proteins.
          Length = 299

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 44  VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQF-IQIGGFSWSLE 94
           VGWLEPLL RIA +  TVV P+I++I  D F     R       GGF WSL 
Sbjct: 98  VGWLEPLLARIAENRKTVVCPIIDVIDADTFEY---RGSSGDARGGFDWSLH 146



 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 2   DRIARDSSAVVCPVIDVLDDSSLEFH--FRDSTGILKEALACIGVGWLEPLLDRIARDNS 59
            RIA +   VVCP+IDV+D  + E+     D+ G    +L      WL    +   R++ 
Sbjct: 106 ARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFK---WLPLPEEERRRESP 162

Query: 60  T--VVSPVI 66
           T  + SP +
Sbjct: 163 TAPIRSPTM 171


>gnl|CDD|221994 pfam13230, GATase_4, Glutamine amidotransferases class-II.  This
          family captures members that are not found in
          pfam00310.
          Length = 272

 Score = 26.5 bits (59), Expect = 2.2
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 43 GVGWLEPLLDRIARDN-STVVSPVIELIRDDDF 74
          G+ + E    R+ +D      SP+ EL++    
Sbjct: 37 GIAFYEGKACRLFKDPQPAATSPLAELVKRYPI 69


>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
          Length = 663

 Score = 26.5 bits (58), Expect = 2.3
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 58  NSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWS 92
           N       +  I + +   + C   F +  G SW+
Sbjct: 173 NDRCGVNALVGIDNSEDTGKRCVETFTEACGLSWT 207


>gnl|CDD|220795 pfam10520, Kua-UEV1_localn, Kua-ubiquitin conjugating enzyme hybrid
           localisation domain.  This domain is part of the
           transcript of the fusion of two genes, the UEV1, an
           enzymatically inactive variant of the E2
           ubiquitin-conjugating enzymes that regulate
           non-canonical elongation of ubiquitin chains, and Kua,
           an otherwise unknown gene. UEV1A is a nuclear protein,
           whereas both Kua and Kua-UEV localise to cytoplasmic
           structures, indicating that the addition of a Kua domain
           to UEV confers new biological properties. UEV1-Kua
           carries the B domain with its characteristic double
           histidine motif, and it is probably this domain which
           determines the cytoplasmic localisation. It is
           postulated that this hybrid transcript could
           preferentially direct the variant polyubiquitination of
           substrates closely associated with the cytoplasmic face
           of the endoplasmic reticulum, possibly, although not
           necessarily, in conjunction with membrane-bound
           ubiquitin-conjugating enzymes.
          Length = 178

 Score = 25.8 bits (57), Expect = 4.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 41  CIGVGWLEPLLDRI 54
           CI  GWL P LDRI
Sbjct: 143 CITTGWLNPPLDRI 156


>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
          Length = 1050

 Score = 25.9 bits (57), Expect = 4.2
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 18/46 (39%)

Query: 27  HFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSPVIELIRDD 72
           H R S G+     A +  GWLE +LDR              L++DD
Sbjct: 825 HSRQSLGV-----ASLKNGWLEIMLDR-------------RLVQDD 852


>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional.
          Length = 277

 Score = 25.3 bits (56), Expect = 5.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 76  LRFCRPQFIQIGGFS 90
           LR C P F++ GG+S
Sbjct: 249 LRNCTPIFLENGGYS 263


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.142    0.438 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,172,309
Number of extensions: 445874
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 16
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)