RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3381
(97 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 59.0 bits (142), Expect = 5e-12
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 44 VGWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSL 93
WLEPLL+R+A D + VVSP+I++I D+F GGF W+L
Sbjct: 161 EHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASAD--LKGGFDWNL 208
Score = 37.4 bits (86), Expect = 2e-04
Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 1 MDRIARDSSAVVCPVIDVLDDSSLEFHFRDS--TGILKEALACIGVGWLEPLLDRIARDN 58
++R+A D + VV P+IDV++ + ++ + G L W ++
Sbjct: 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVF---KWDYMTPEQRRSRQ 224
Query: 59 STVVSPV-IELIRDDDFALRFCRPQFIQIGGFSWSLEV 95
V+P+ +I F + + F ++G + ++V
Sbjct: 225 GNPVAPIKTPMIAGGLFVMD--KFYFEELGKYDMMMDV 260
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 55.6 bits (133), Expect = 1e-10
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 45 GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLE 94
WL PLLDRIAR+ T+V P+I++I DDF G F W +
Sbjct: 212 NWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDA-MRGAFDWEMY 260
Score = 39.4 bits (91), Expect = 5e-05
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 1 MDRIARDSSAVVCPVIDVLDDSSLEFHFRDST---GILKEALAC--IGVGWLEPLLDRIA 55
+DRIAR+ +VCP+IDV+D + + G + I + D
Sbjct: 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSD 277
Query: 56 RDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEV 95
S V++ + + R F ++GG+ LE+
Sbjct: 278 PFESPVMAGGLFAVD---------RKWFWELGGYDPGLEI 308
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 52.8 bits (126), Expect = 7e-10
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 45 GWLEPLLDRIARDNSTVVSPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
GWLEPLL RI D TVV P+I++I DD F GGF+W L R
Sbjct: 130 GWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDM--TYGGFNWKLNFR 179
Score = 38.2 bits (88), Expect = 1e-04
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 1 MDRIARDSSAVVCPVIDVLDDSSLEFHFRD--STGILKEALACIGVGWLEPLLDRIARDN 58
+ RI D VVCP+IDV+ D + E+ + G L + +DR D
Sbjct: 136 LARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR 195
Query: 59 STVV-SPVIELIRDDDFALRFCRPQFIQIGGFSWSLEVR 96
+ V +P + R F +IG + +++
Sbjct: 196 TLPVRTPTMAG-----GLFSIDRDYFQEIGTYDAGMDIW 229
>1ihm_A Capsid protein; beta-barrel, EF-TU-like domain caliciviridae, T=3
icosahedra icosahedral virus; 3.40A {Norwalk virus}
SCOP: b.121.4.3
Length = 530
Score = 31.7 bits (71), Expect = 0.022
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 5 ARDSSAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSP 64
R + P+ DV ++ FH D + + PL +S VV+
Sbjct: 152 VRTLDPIEVPLEDV---RNVLFHNNDRN----QQTMRLVCMLYTPLRTGGGTGDSFVVAG 204
Query: 65 VIELIRDDDFALRFCRPQFIQIGGFSWSLEVRS 97
+ DF F P ++ ++L
Sbjct: 205 RVMTCPSPDFNFLFLVPPTVEQKTRPFTLPNLP 237
>3zue_A VP1, capsid structural protein VP60; CAGE design, molecular switch,
protein engineering, structural polymorphism; 10.30A
{Rabbit hemorrhagic disease virus}
Length = 579
Score = 28.4 bits (62), Expect = 0.39
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 5 ARDSSAVVCPVIDVLDDSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTVVSP 64
AR V + D+ +H + + + L+ +++ +
Sbjct: 160 ARSLEPVTNTMPDL---RPNMYHPTGDP----GLVPTLVLSVYNNLI-NPFGGSTSAIQV 211
Query: 65 VIELIRDDDFALRFCRP 81
+E +DF R
Sbjct: 212 TVETRPSEDFEFVMIRA 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.44
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 28/81 (34%)
Query: 9 SAVVCPVIDVLDDSSLE-----FHFR----------DSTGILKEALACIGVGW------- 46
+A+ + DV+ S+E +R D G + I G
Sbjct: 1768 AALAS-LADVM---SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 47 --LEPLLDRIARDNSTVVSPV 65
L+ +++R+ + +V V
Sbjct: 1824 EALQYVVERVGKRTGWLVEIV 1844
Score = 27.7 bits (61), Expect = 0.58
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 7 DSSAVVCPVIDVLDDSSLEFHFRDSTGILKE------ALACIGVGWLEPLLDR 53
D + +++ S + FR G+L AL + E L +
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 27.7 bits (62), Expect = 0.56
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 42 IGVGWLEPLLDRIARDNSTVV--SPVIELIRDDD 73
G ++ L S V++L+ +DD
Sbjct: 248 SGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 281
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 0.96
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 20/41 (48%)
Query: 21 DSSLEFHFRDSTGILKEALACIGVGWLEPLLDRIARDNSTV 61
+SL+ + DS ALA I +T+
Sbjct: 26 QASLKLYADDSA----PALA-I---------------KATM 46
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 25.8 bits (57), Expect = 2.2
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 42 IGVGWLEPLLDRIARDNSTVV--SPVIELIRDDD 73
+G + L D + + + S V+ ++ D
Sbjct: 253 VGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS 286
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 25.4 bits (56), Expect = 3.5
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 42 IGVGWLEPLLDRIARDNSTVV--SPVIELIRDDD 73
+G ++ L D + N + + IE+++DD
Sbjct: 253 VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 286
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex,
MBP 2 fold, ABC transporter fold, thermophilic protein;
HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Length = 409
Score = 24.7 bits (54), Expect = 7.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 45 GWLEPLLDRIARDN 58
GWLEPL D + +DN
Sbjct: 80 GWLEPLDDYVQKDN 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.438
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,613,007
Number of extensions: 88754
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 18
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.1 bits)