BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3383
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 29.6 bits (65), Expect = 0.69, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIR 149
I ++++ P ++ + D EL+ DP EYIR
Sbjct: 338 ITEQIILPNVTLREEDVELFEDDPIEYIR 366
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 29.6 bits (65), Expect = 0.69, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIR 149
I ++++ P ++ + D EL+ DP EYIR
Sbjct: 338 ITEQIILPNVTLREEDVELFEDDPIEYIR 366
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 85 AGHYISPRVMQQALNYLTQAVGHGHCW 111
+G YISP M++ALNY+ + V G +
Sbjct: 263 SGGYISPTEMKKALNYIIKGVPFGGKY 289
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 85 AGHYISPRVMQQALNYLTQAVGHGHCW 111
+G YISP M++ALNY+ + V G +
Sbjct: 263 SGGYISPTEMKKALNYIIKGVPFGGKY 289
>pdb|3N13|A Chain A, Crystal Stricture Of D143a Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 85 AGHYISPRVMQQALNYLTQAVGHG 108
+G YISP M++ALNY+ + V G
Sbjct: 263 SGGYISPTEMKKALNYIIKGVPFG 286
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 85 AGHYISPRVMQQALNYLTQAVGHGHCW 111
+G YISP M++ALNY+ + V G +
Sbjct: 263 SGGYISPTEMKKALNYIIKGVPFGGKY 289
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 85 AGHYISPRVMQQALNYLTQAVGHGHCW 111
+G YISP M++ALNY+ + V G +
Sbjct: 263 SGGYISPTEMKKALNYIIKGVPFGGKY 289
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 19/84 (22%)
Query: 23 ERADTPWWKCKKWALHILSRIFERYGSPGGV--------VSDYEEFARWYLKTFSAGILD 74
ER +T K ++ L +R+ P G V D EEFARW L F+
Sbjct: 305 ERVETVLKKLEEHGL-------KRFTKPSGAFYITAELPVEDAEEFARWXLTDFNXDGET 357
Query: 75 VLLATLAQYRAGHYISPRVMQQAL 98
+A L G Y++P + ++ +
Sbjct: 358 TXVAPL----RGFYLTPGLGKKEI 377
>pdb|1EJ6|D Chain D, Reovirus Core
pdb|1EJ6|E Chain E, Reovirus Core
pdb|2CSE|X Chain X, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Y Chain Y, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Z Chain Z, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 418
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 118 ATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFG 153
A ++ F +SY DE++WS D ++ + FG
Sbjct: 149 AVTLLNLTGFGPISYVRVDEDMWSGDVNQLLMNYFG 184
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 73 LDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHG 108
+D L + Y AG Y ALN+ AVG+G
Sbjct: 135 IDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYG 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,346,184
Number of Sequences: 62578
Number of extensions: 209755
Number of successful extensions: 434
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 11
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)